Multiple sequence alignment - TraesCS5A01G355000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G355000 chr5A 100.000 4625 0 0 1 4625 557130700 557126076 0.000000e+00 8541.0
1 TraesCS5A01G355000 chr5B 94.908 3162 140 10 575 3725 536590181 536587030 0.000000e+00 4927.0
2 TraesCS5A01G355000 chr5B 90.241 912 47 14 3723 4625 536586949 536586071 0.000000e+00 1153.0
3 TraesCS5A01G355000 chr5B 94.516 310 17 0 1581 1890 50653748 50654057 3.240000e-131 479.0
4 TraesCS5A01G355000 chr5B 88.846 260 29 0 1631 1890 511469112 511468853 2.080000e-83 320.0
5 TraesCS5A01G355000 chr5B 96.154 104 4 0 1370 1473 50653653 50653756 2.210000e-38 171.0
6 TraesCS5A01G355000 chr5D 94.163 3255 144 18 484 3725 441023603 441020382 0.000000e+00 4916.0
7 TraesCS5A01G355000 chr5D 93.619 909 34 9 3723 4625 441020301 441019411 0.000000e+00 1336.0
8 TraesCS5A01G355000 chr5D 100.000 29 0 0 4479 4507 441019593 441019565 2.000000e-03 54.7
9 TraesCS5A01G355000 chr4D 95.393 521 24 0 1370 1890 503796429 503795909 0.000000e+00 830.0
10 TraesCS5A01G355000 chr6A 88.601 386 33 4 1504 1889 52324032 52323658 4.220000e-125 459.0
11 TraesCS5A01G355000 chr6A 88.342 386 34 4 1504 1889 52329349 52328975 1.960000e-123 453.0
12 TraesCS5A01G355000 chr6A 95.849 265 11 0 1626 1890 16649662 16649398 3.310000e-116 429.0
13 TraesCS5A01G355000 chr6A 95.000 60 2 1 1416 1474 52329481 52329422 4.930000e-15 93.5
14 TraesCS5A01G355000 chr2B 92.830 265 19 0 1626 1890 526519327 526519591 7.260000e-103 385.0
15 TraesCS5A01G355000 chr2B 97.436 39 1 0 182 220 738820013 738820051 2.990000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G355000 chr5A 557126076 557130700 4624 True 8541.000000 8541 100.000000 1 4625 1 chr5A.!!$R1 4624
1 TraesCS5A01G355000 chr5B 536586071 536590181 4110 True 3040.000000 4927 92.574500 575 4625 2 chr5B.!!$R2 4050
2 TraesCS5A01G355000 chr5D 441019411 441023603 4192 True 2102.233333 4916 95.927333 484 4625 3 chr5D.!!$R1 4141
3 TraesCS5A01G355000 chr4D 503795909 503796429 520 True 830.000000 830 95.393000 1370 1890 1 chr4D.!!$R1 520
4 TraesCS5A01G355000 chr6A 52328975 52329481 506 True 273.250000 453 91.671000 1416 1889 2 chr6A.!!$R3 473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.032540 CCTTTGTGCCAGCCTTGTTC 59.967 55.0 0.00 0.00 0.00 3.18 F
282 283 0.097674 CAAAGATGTACCTGCGCTGC 59.902 55.0 9.73 0.00 0.00 5.25 F
2093 2142 0.037303 CCCAAGCAGGAGCAGAAGAA 59.963 55.0 0.00 0.00 45.49 2.52 F
2679 2749 0.036164 TTGACATCCCGGTTGTGAGG 59.964 55.0 11.65 0.33 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2011 2060 0.976641 ATTCCACTCAAGTCCTGCGA 59.023 50.0 0.00 0.00 0.0 5.10 R
2214 2275 0.391793 CCTCCGCCTCTTTGTCTTCC 60.392 60.0 0.00 0.00 0.0 3.46 R
3072 3142 0.242286 CCTCGATGGCCATAGTCTCG 59.758 60.0 20.84 18.95 0.0 4.04 R
4108 4267 0.312729 CCGTTTGGCACCTTGGTTAC 59.687 55.0 0.00 0.00 0.0 2.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.031495 ACTGAAGCCCTTGTAGTCCT 57.969 50.000 0.00 0.00 0.00 3.85
20 21 2.339769 ACTGAAGCCCTTGTAGTCCTT 58.660 47.619 0.00 0.00 0.00 3.36
21 22 2.711547 ACTGAAGCCCTTGTAGTCCTTT 59.288 45.455 0.00 0.00 0.00 3.11
22 23 3.077359 CTGAAGCCCTTGTAGTCCTTTG 58.923 50.000 0.00 0.00 0.00 2.77
23 24 2.441750 TGAAGCCCTTGTAGTCCTTTGT 59.558 45.455 0.00 0.00 0.00 2.83
24 25 2.568623 AGCCCTTGTAGTCCTTTGTG 57.431 50.000 0.00 0.00 0.00 3.33
25 26 0.881796 GCCCTTGTAGTCCTTTGTGC 59.118 55.000 0.00 0.00 0.00 4.57
26 27 1.534729 CCCTTGTAGTCCTTTGTGCC 58.465 55.000 0.00 0.00 0.00 5.01
27 28 1.202879 CCCTTGTAGTCCTTTGTGCCA 60.203 52.381 0.00 0.00 0.00 4.92
28 29 2.154462 CCTTGTAGTCCTTTGTGCCAG 58.846 52.381 0.00 0.00 0.00 4.85
29 30 1.537202 CTTGTAGTCCTTTGTGCCAGC 59.463 52.381 0.00 0.00 0.00 4.85
30 31 0.250727 TGTAGTCCTTTGTGCCAGCC 60.251 55.000 0.00 0.00 0.00 4.85
31 32 0.036875 GTAGTCCTTTGTGCCAGCCT 59.963 55.000 0.00 0.00 0.00 4.58
32 33 0.771127 TAGTCCTTTGTGCCAGCCTT 59.229 50.000 0.00 0.00 0.00 4.35
33 34 0.825010 AGTCCTTTGTGCCAGCCTTG 60.825 55.000 0.00 0.00 0.00 3.61
34 35 1.109323 GTCCTTTGTGCCAGCCTTGT 61.109 55.000 0.00 0.00 0.00 3.16
35 36 0.396974 TCCTTTGTGCCAGCCTTGTT 60.397 50.000 0.00 0.00 0.00 2.83
36 37 0.032540 CCTTTGTGCCAGCCTTGTTC 59.967 55.000 0.00 0.00 0.00 3.18
37 38 1.035139 CTTTGTGCCAGCCTTGTTCT 58.965 50.000 0.00 0.00 0.00 3.01
38 39 2.229792 CTTTGTGCCAGCCTTGTTCTA 58.770 47.619 0.00 0.00 0.00 2.10
39 40 1.604604 TTGTGCCAGCCTTGTTCTAC 58.395 50.000 0.00 0.00 0.00 2.59
40 41 0.472044 TGTGCCAGCCTTGTTCTACA 59.528 50.000 0.00 0.00 0.00 2.74
41 42 1.073763 TGTGCCAGCCTTGTTCTACAT 59.926 47.619 0.00 0.00 0.00 2.29
42 43 1.470098 GTGCCAGCCTTGTTCTACATG 59.530 52.381 0.00 0.00 0.00 3.21
43 44 1.073763 TGCCAGCCTTGTTCTACATGT 59.926 47.619 2.69 2.69 0.00 3.21
44 45 2.162681 GCCAGCCTTGTTCTACATGTT 58.837 47.619 2.30 0.00 0.00 2.71
45 46 2.558359 GCCAGCCTTGTTCTACATGTTT 59.442 45.455 2.30 0.00 0.00 2.83
46 47 3.366374 GCCAGCCTTGTTCTACATGTTTC 60.366 47.826 2.30 0.00 0.00 2.78
47 48 4.074970 CCAGCCTTGTTCTACATGTTTCT 58.925 43.478 2.30 0.00 0.00 2.52
48 49 4.520492 CCAGCCTTGTTCTACATGTTTCTT 59.480 41.667 2.30 0.00 0.00 2.52
49 50 5.705441 CCAGCCTTGTTCTACATGTTTCTTA 59.295 40.000 2.30 0.00 0.00 2.10
50 51 6.348540 CCAGCCTTGTTCTACATGTTTCTTAC 60.349 42.308 2.30 0.00 0.00 2.34
51 52 6.204688 CAGCCTTGTTCTACATGTTTCTTACA 59.795 38.462 2.30 0.00 41.97 2.41
69 70 9.929180 TTTCTTACATGAGTATATGTCCATAGC 57.071 33.333 0.00 0.00 41.31 2.97
70 71 8.885693 TCTTACATGAGTATATGTCCATAGCT 57.114 34.615 0.00 0.00 41.31 3.32
71 72 9.975218 TCTTACATGAGTATATGTCCATAGCTA 57.025 33.333 0.00 0.00 41.31 3.32
74 75 8.601047 ACATGAGTATATGTCCATAGCTATGT 57.399 34.615 27.75 14.68 36.60 2.29
75 76 9.700831 ACATGAGTATATGTCCATAGCTATGTA 57.299 33.333 27.75 13.58 36.60 2.29
78 79 9.920946 TGAGTATATGTCCATAGCTATGTATCA 57.079 33.333 27.75 22.38 31.82 2.15
85 86 8.607441 TGTCCATAGCTATGTATCAAATGTTC 57.393 34.615 27.75 11.03 31.82 3.18
86 87 8.432013 TGTCCATAGCTATGTATCAAATGTTCT 58.568 33.333 27.75 0.00 31.82 3.01
87 88 9.277783 GTCCATAGCTATGTATCAAATGTTCTT 57.722 33.333 27.75 0.00 31.82 2.52
88 89 9.851686 TCCATAGCTATGTATCAAATGTTCTTT 57.148 29.630 27.75 0.00 31.82 2.52
109 110 5.574970 TTTTTGGGGGCATAACAGAAAAT 57.425 34.783 0.00 0.00 0.00 1.82
110 111 6.688073 TTTTTGGGGGCATAACAGAAAATA 57.312 33.333 0.00 0.00 0.00 1.40
111 112 6.688073 TTTTGGGGGCATAACAGAAAATAA 57.312 33.333 0.00 0.00 0.00 1.40
112 113 6.882768 TTTGGGGGCATAACAGAAAATAAT 57.117 33.333 0.00 0.00 0.00 1.28
113 114 6.478512 TTGGGGGCATAACAGAAAATAATC 57.521 37.500 0.00 0.00 0.00 1.75
114 115 5.523588 TGGGGGCATAACAGAAAATAATCA 58.476 37.500 0.00 0.00 0.00 2.57
115 116 5.362430 TGGGGGCATAACAGAAAATAATCAC 59.638 40.000 0.00 0.00 0.00 3.06
116 117 5.362430 GGGGGCATAACAGAAAATAATCACA 59.638 40.000 0.00 0.00 0.00 3.58
117 118 6.273071 GGGGCATAACAGAAAATAATCACAC 58.727 40.000 0.00 0.00 0.00 3.82
118 119 6.127479 GGGGCATAACAGAAAATAATCACACA 60.127 38.462 0.00 0.00 0.00 3.72
119 120 7.417797 GGGGCATAACAGAAAATAATCACACAT 60.418 37.037 0.00 0.00 0.00 3.21
120 121 7.436080 GGGCATAACAGAAAATAATCACACATG 59.564 37.037 0.00 0.00 0.00 3.21
121 122 7.975616 GGCATAACAGAAAATAATCACACATGT 59.024 33.333 0.00 0.00 0.00 3.21
122 123 9.357652 GCATAACAGAAAATAATCACACATGTT 57.642 29.630 0.00 0.00 33.36 2.71
126 127 8.801715 ACAGAAAATAATCACACATGTTGTTC 57.198 30.769 0.00 0.00 35.67 3.18
127 128 8.412456 ACAGAAAATAATCACACATGTTGTTCA 58.588 29.630 0.00 0.00 35.67 3.18
128 129 9.414295 CAGAAAATAATCACACATGTTGTTCAT 57.586 29.630 0.00 0.00 35.67 2.57
161 162 7.931578 ATAACTAATTTGTCGGATGGTTTGA 57.068 32.000 0.00 0.00 0.00 2.69
162 163 5.880054 ACTAATTTGTCGGATGGTTTGAG 57.120 39.130 0.00 0.00 0.00 3.02
163 164 4.700213 ACTAATTTGTCGGATGGTTTGAGG 59.300 41.667 0.00 0.00 0.00 3.86
164 165 2.649531 TTTGTCGGATGGTTTGAGGT 57.350 45.000 0.00 0.00 0.00 3.85
165 166 3.773418 TTTGTCGGATGGTTTGAGGTA 57.227 42.857 0.00 0.00 0.00 3.08
166 167 3.773418 TTGTCGGATGGTTTGAGGTAA 57.227 42.857 0.00 0.00 0.00 2.85
167 168 3.992943 TGTCGGATGGTTTGAGGTAAT 57.007 42.857 0.00 0.00 0.00 1.89
168 169 5.423704 TTGTCGGATGGTTTGAGGTAATA 57.576 39.130 0.00 0.00 0.00 0.98
169 170 5.423704 TGTCGGATGGTTTGAGGTAATAA 57.576 39.130 0.00 0.00 0.00 1.40
170 171 5.806818 TGTCGGATGGTTTGAGGTAATAAA 58.193 37.500 0.00 0.00 0.00 1.40
171 172 5.878116 TGTCGGATGGTTTGAGGTAATAAAG 59.122 40.000 0.00 0.00 0.00 1.85
172 173 5.878669 GTCGGATGGTTTGAGGTAATAAAGT 59.121 40.000 0.00 0.00 0.00 2.66
173 174 6.036844 GTCGGATGGTTTGAGGTAATAAAGTC 59.963 42.308 0.00 0.00 0.00 3.01
174 175 6.070424 TCGGATGGTTTGAGGTAATAAAGTCT 60.070 38.462 0.00 0.00 0.00 3.24
175 176 6.037172 CGGATGGTTTGAGGTAATAAAGTCTG 59.963 42.308 0.00 0.00 0.00 3.51
176 177 6.183360 GGATGGTTTGAGGTAATAAAGTCTGC 60.183 42.308 0.00 0.00 0.00 4.26
177 178 5.007682 TGGTTTGAGGTAATAAAGTCTGCC 58.992 41.667 0.00 0.00 0.00 4.85
178 179 5.007682 GGTTTGAGGTAATAAAGTCTGCCA 58.992 41.667 0.00 0.00 0.00 4.92
179 180 5.475564 GGTTTGAGGTAATAAAGTCTGCCAA 59.524 40.000 0.00 0.00 0.00 4.52
180 181 6.349363 GGTTTGAGGTAATAAAGTCTGCCAAG 60.349 42.308 0.00 0.00 0.00 3.61
181 182 5.499004 TGAGGTAATAAAGTCTGCCAAGT 57.501 39.130 0.00 0.00 0.00 3.16
182 183 6.614694 TGAGGTAATAAAGTCTGCCAAGTA 57.385 37.500 0.00 0.00 0.00 2.24
183 184 6.403878 TGAGGTAATAAAGTCTGCCAAGTAC 58.596 40.000 0.00 0.00 0.00 2.73
184 185 6.212791 TGAGGTAATAAAGTCTGCCAAGTACT 59.787 38.462 0.00 0.00 0.00 2.73
185 186 6.407202 AGGTAATAAAGTCTGCCAAGTACTG 58.593 40.000 0.00 0.00 0.00 2.74
186 187 6.013639 AGGTAATAAAGTCTGCCAAGTACTGT 60.014 38.462 0.00 0.00 0.00 3.55
187 188 7.179694 AGGTAATAAAGTCTGCCAAGTACTGTA 59.820 37.037 0.00 0.00 0.00 2.74
188 189 7.491696 GGTAATAAAGTCTGCCAAGTACTGTAG 59.508 40.741 0.00 0.00 0.00 2.74
189 190 3.963428 AAGTCTGCCAAGTACTGTAGG 57.037 47.619 0.00 0.01 0.00 3.18
190 191 2.180276 AGTCTGCCAAGTACTGTAGGG 58.820 52.381 0.00 0.00 0.00 3.53
191 192 1.207329 GTCTGCCAAGTACTGTAGGGG 59.793 57.143 0.00 0.00 0.00 4.79
192 193 0.107654 CTGCCAAGTACTGTAGGGGC 60.108 60.000 14.18 14.18 41.70 5.80
193 194 0.546747 TGCCAAGTACTGTAGGGGCT 60.547 55.000 19.05 0.00 41.86 5.19
194 195 0.618981 GCCAAGTACTGTAGGGGCTT 59.381 55.000 13.92 1.14 38.37 4.35
195 196 1.407025 GCCAAGTACTGTAGGGGCTTC 60.407 57.143 13.92 0.00 38.37 3.86
196 197 1.209747 CCAAGTACTGTAGGGGCTTCC 59.790 57.143 0.00 0.00 0.00 3.46
211 212 5.836821 GGGCTTCCCTTATAGTCTTTTTG 57.163 43.478 0.00 0.00 41.34 2.44
212 213 5.262009 GGGCTTCCCTTATAGTCTTTTTGT 58.738 41.667 0.00 0.00 41.34 2.83
213 214 5.357314 GGGCTTCCCTTATAGTCTTTTTGTC 59.643 44.000 0.00 0.00 41.34 3.18
214 215 5.944007 GGCTTCCCTTATAGTCTTTTTGTCA 59.056 40.000 0.00 0.00 0.00 3.58
215 216 6.433093 GGCTTCCCTTATAGTCTTTTTGTCAA 59.567 38.462 0.00 0.00 0.00 3.18
216 217 7.039993 GGCTTCCCTTATAGTCTTTTTGTCAAA 60.040 37.037 0.00 0.00 0.00 2.69
217 218 8.357402 GCTTCCCTTATAGTCTTTTTGTCAAAA 58.643 33.333 6.65 6.65 0.00 2.44
235 236 2.245159 AAAAGAAAAGCCAGCCAAGC 57.755 45.000 0.00 0.00 0.00 4.01
236 237 1.122227 AAAGAAAAGCCAGCCAAGCA 58.878 45.000 0.00 0.00 0.00 3.91
237 238 1.345063 AAGAAAAGCCAGCCAAGCAT 58.655 45.000 0.00 0.00 0.00 3.79
238 239 1.345063 AGAAAAGCCAGCCAAGCATT 58.655 45.000 0.00 0.00 0.00 3.56
239 240 1.695788 AGAAAAGCCAGCCAAGCATTT 59.304 42.857 0.00 0.00 34.15 2.32
240 241 2.899256 AGAAAAGCCAGCCAAGCATTTA 59.101 40.909 0.00 0.00 31.83 1.40
241 242 3.056322 AGAAAAGCCAGCCAAGCATTTAG 60.056 43.478 0.00 0.00 31.83 1.85
242 243 0.533951 AAGCCAGCCAAGCATTTAGC 59.466 50.000 0.00 0.00 46.19 3.09
254 255 3.216147 GCATTTAGCATTGTGTTCGGT 57.784 42.857 0.00 0.00 44.79 4.69
255 256 3.574614 GCATTTAGCATTGTGTTCGGTT 58.425 40.909 0.00 0.00 44.79 4.44
256 257 3.987220 GCATTTAGCATTGTGTTCGGTTT 59.013 39.130 0.00 0.00 44.79 3.27
257 258 4.089923 GCATTTAGCATTGTGTTCGGTTTC 59.910 41.667 0.00 0.00 44.79 2.78
258 259 4.902443 TTTAGCATTGTGTTCGGTTTCA 57.098 36.364 0.00 0.00 0.00 2.69
259 260 4.902443 TTAGCATTGTGTTCGGTTTCAA 57.098 36.364 0.00 0.00 0.00 2.69
260 261 3.354089 AGCATTGTGTTCGGTTTCAAG 57.646 42.857 0.00 0.00 0.00 3.02
261 262 2.948979 AGCATTGTGTTCGGTTTCAAGA 59.051 40.909 0.00 0.00 0.00 3.02
262 263 3.380004 AGCATTGTGTTCGGTTTCAAGAA 59.620 39.130 0.00 0.00 0.00 2.52
263 264 3.485743 GCATTGTGTTCGGTTTCAAGAAC 59.514 43.478 1.80 1.80 44.93 3.01
271 272 5.578776 GTTCGGTTTCAAGAACAAAGATGT 58.421 37.500 3.77 0.00 44.32 3.06
272 273 6.721321 GTTCGGTTTCAAGAACAAAGATGTA 58.279 36.000 3.77 0.00 44.32 2.29
273 274 6.295039 TCGGTTTCAAGAACAAAGATGTAC 57.705 37.500 0.00 0.00 39.40 2.90
274 275 5.237779 TCGGTTTCAAGAACAAAGATGTACC 59.762 40.000 0.00 0.00 39.40 3.34
275 276 5.238650 CGGTTTCAAGAACAAAGATGTACCT 59.761 40.000 0.00 0.00 39.40 3.08
276 277 6.438763 GGTTTCAAGAACAAAGATGTACCTG 58.561 40.000 0.00 0.00 39.40 4.00
277 278 5.689383 TTCAAGAACAAAGATGTACCTGC 57.311 39.130 0.00 0.00 39.40 4.85
278 279 3.745975 TCAAGAACAAAGATGTACCTGCG 59.254 43.478 0.00 0.00 39.40 5.18
279 280 2.076863 AGAACAAAGATGTACCTGCGC 58.923 47.619 0.00 0.00 39.40 6.09
280 281 2.076863 GAACAAAGATGTACCTGCGCT 58.923 47.619 9.73 0.00 39.40 5.92
281 282 1.442769 ACAAAGATGTACCTGCGCTG 58.557 50.000 9.73 8.47 38.24 5.18
282 283 0.097674 CAAAGATGTACCTGCGCTGC 59.902 55.000 9.73 0.00 0.00 5.25
283 284 1.026718 AAAGATGTACCTGCGCTGCC 61.027 55.000 9.73 0.00 0.00 4.85
284 285 2.125147 GATGTACCTGCGCTGCCA 60.125 61.111 9.73 5.48 0.00 4.92
285 286 1.745115 GATGTACCTGCGCTGCCAA 60.745 57.895 9.73 0.00 0.00 4.52
286 287 1.077501 ATGTACCTGCGCTGCCAAT 60.078 52.632 9.73 0.00 0.00 3.16
287 288 0.680921 ATGTACCTGCGCTGCCAATT 60.681 50.000 9.73 0.00 0.00 2.32
288 289 0.893270 TGTACCTGCGCTGCCAATTT 60.893 50.000 9.73 0.00 0.00 1.82
289 290 0.243636 GTACCTGCGCTGCCAATTTT 59.756 50.000 9.73 0.00 0.00 1.82
290 291 0.965439 TACCTGCGCTGCCAATTTTT 59.035 45.000 9.73 0.00 0.00 1.94
309 310 5.596836 TTTTTCTGAAAATGCACTCTGGT 57.403 34.783 15.63 0.00 30.07 4.00
310 311 5.596836 TTTTCTGAAAATGCACTCTGGTT 57.403 34.783 11.33 0.00 0.00 3.67
311 312 4.572985 TTCTGAAAATGCACTCTGGTTG 57.427 40.909 0.00 0.00 0.00 3.77
312 313 2.294233 TCTGAAAATGCACTCTGGTTGC 59.706 45.455 0.00 0.00 0.00 4.17
313 314 2.030371 TGAAAATGCACTCTGGTTGCA 58.970 42.857 0.00 0.00 43.04 4.08
314 315 2.429971 TGAAAATGCACTCTGGTTGCAA 59.570 40.909 0.00 0.00 42.12 4.08
315 316 2.806608 AAATGCACTCTGGTTGCAAG 57.193 45.000 0.00 0.00 42.12 4.01
316 317 0.316204 AATGCACTCTGGTTGCAAGC 59.684 50.000 21.51 21.51 42.12 4.01
317 318 0.824595 ATGCACTCTGGTTGCAAGCA 60.825 50.000 28.05 28.05 42.12 3.91
318 319 0.824595 TGCACTCTGGTTGCAAGCAT 60.825 50.000 29.75 14.23 35.65 3.79
319 320 0.388134 GCACTCTGGTTGCAAGCATG 60.388 55.000 29.75 24.78 35.65 4.06
320 321 0.956633 CACTCTGGTTGCAAGCATGT 59.043 50.000 29.75 25.79 35.65 3.21
321 322 0.956633 ACTCTGGTTGCAAGCATGTG 59.043 50.000 29.75 23.28 35.65 3.21
322 323 0.242825 CTCTGGTTGCAAGCATGTGG 59.757 55.000 29.75 18.67 35.65 4.17
323 324 0.178995 TCTGGTTGCAAGCATGTGGA 60.179 50.000 29.75 20.55 35.65 4.02
324 325 0.675083 CTGGTTGCAAGCATGTGGAA 59.325 50.000 29.75 7.08 35.65 3.53
325 326 1.068895 CTGGTTGCAAGCATGTGGAAA 59.931 47.619 29.75 6.34 35.65 3.13
326 327 1.068895 TGGTTGCAAGCATGTGGAAAG 59.931 47.619 26.54 0.00 30.02 2.62
327 328 1.142474 GTTGCAAGCATGTGGAAAGC 58.858 50.000 0.00 0.00 30.02 3.51
328 329 0.751452 TTGCAAGCATGTGGAAAGCA 59.249 45.000 0.00 0.00 0.00 3.91
329 330 0.970640 TGCAAGCATGTGGAAAGCAT 59.029 45.000 0.00 0.00 0.00 3.79
330 331 2.169330 TGCAAGCATGTGGAAAGCATA 58.831 42.857 0.00 0.00 0.00 3.14
331 332 2.164827 TGCAAGCATGTGGAAAGCATAG 59.835 45.455 0.00 0.00 0.00 2.23
332 333 2.480759 GCAAGCATGTGGAAAGCATAGG 60.481 50.000 0.00 0.00 0.00 2.57
333 334 2.756760 CAAGCATGTGGAAAGCATAGGT 59.243 45.455 0.00 0.00 0.00 3.08
334 335 3.091633 AGCATGTGGAAAGCATAGGTT 57.908 42.857 0.00 0.00 0.00 3.50
335 336 3.434309 AGCATGTGGAAAGCATAGGTTT 58.566 40.909 0.00 0.00 35.90 3.27
336 337 3.834231 AGCATGTGGAAAGCATAGGTTTT 59.166 39.130 0.00 0.00 33.25 2.43
337 338 3.928375 GCATGTGGAAAGCATAGGTTTTG 59.072 43.478 0.00 0.00 33.25 2.44
338 339 4.561326 GCATGTGGAAAGCATAGGTTTTGT 60.561 41.667 0.00 0.00 33.25 2.83
339 340 5.336372 GCATGTGGAAAGCATAGGTTTTGTA 60.336 40.000 0.00 0.00 33.25 2.41
340 341 6.627953 GCATGTGGAAAGCATAGGTTTTGTAT 60.628 38.462 0.00 0.00 33.25 2.29
341 342 6.266168 TGTGGAAAGCATAGGTTTTGTATG 57.734 37.500 0.00 0.00 33.25 2.39
342 343 5.184864 TGTGGAAAGCATAGGTTTTGTATGG 59.815 40.000 0.00 0.00 33.25 2.74
343 344 5.185056 GTGGAAAGCATAGGTTTTGTATGGT 59.815 40.000 0.00 0.00 39.68 3.55
344 345 5.184864 TGGAAAGCATAGGTTTTGTATGGTG 59.815 40.000 0.00 0.00 38.35 4.17
345 346 4.718940 AAGCATAGGTTTTGTATGGTGC 57.281 40.909 0.00 0.00 38.35 5.01
346 347 3.968265 AGCATAGGTTTTGTATGGTGCT 58.032 40.909 0.00 0.00 37.25 4.40
347 348 3.947834 AGCATAGGTTTTGTATGGTGCTC 59.052 43.478 0.00 0.00 37.09 4.26
348 349 3.694072 GCATAGGTTTTGTATGGTGCTCA 59.306 43.478 0.00 0.00 0.00 4.26
349 350 4.339247 GCATAGGTTTTGTATGGTGCTCAT 59.661 41.667 0.00 0.00 39.78 2.90
350 351 5.163519 GCATAGGTTTTGTATGGTGCTCATT 60.164 40.000 0.00 0.00 37.30 2.57
351 352 6.627953 GCATAGGTTTTGTATGGTGCTCATTT 60.628 38.462 0.00 0.00 37.30 2.32
352 353 5.138125 AGGTTTTGTATGGTGCTCATTTG 57.862 39.130 0.00 0.00 37.30 2.32
353 354 3.679502 GGTTTTGTATGGTGCTCATTTGC 59.320 43.478 0.00 0.00 37.30 3.68
354 355 3.591196 TTTGTATGGTGCTCATTTGCC 57.409 42.857 0.00 0.00 37.30 4.52
355 356 2.512692 TGTATGGTGCTCATTTGCCT 57.487 45.000 0.00 0.00 37.30 4.75
356 357 3.643199 TGTATGGTGCTCATTTGCCTA 57.357 42.857 0.00 0.00 37.30 3.93
357 358 3.544684 TGTATGGTGCTCATTTGCCTAG 58.455 45.455 0.00 0.00 37.30 3.02
358 359 2.814805 ATGGTGCTCATTTGCCTAGT 57.185 45.000 0.00 0.00 30.55 2.57
359 360 2.584835 TGGTGCTCATTTGCCTAGTT 57.415 45.000 0.00 0.00 0.00 2.24
360 361 2.875296 TGGTGCTCATTTGCCTAGTTT 58.125 42.857 0.00 0.00 0.00 2.66
361 362 3.230134 TGGTGCTCATTTGCCTAGTTTT 58.770 40.909 0.00 0.00 0.00 2.43
362 363 3.255642 TGGTGCTCATTTGCCTAGTTTTC 59.744 43.478 0.00 0.00 0.00 2.29
363 364 3.367395 GGTGCTCATTTGCCTAGTTTTCC 60.367 47.826 0.00 0.00 0.00 3.13
364 365 3.255642 GTGCTCATTTGCCTAGTTTTCCA 59.744 43.478 0.00 0.00 0.00 3.53
365 366 3.255642 TGCTCATTTGCCTAGTTTTCCAC 59.744 43.478 0.00 0.00 0.00 4.02
366 367 3.255642 GCTCATTTGCCTAGTTTTCCACA 59.744 43.478 0.00 0.00 0.00 4.17
367 368 4.261994 GCTCATTTGCCTAGTTTTCCACAA 60.262 41.667 0.00 0.00 0.00 3.33
368 369 5.738783 GCTCATTTGCCTAGTTTTCCACAAA 60.739 40.000 0.00 0.00 0.00 2.83
369 370 6.418057 TCATTTGCCTAGTTTTCCACAAAT 57.582 33.333 0.00 0.00 38.02 2.32
370 371 6.825610 TCATTTGCCTAGTTTTCCACAAATT 58.174 32.000 0.00 0.00 36.01 1.82
371 372 7.957002 TCATTTGCCTAGTTTTCCACAAATTA 58.043 30.769 0.00 0.00 36.01 1.40
372 373 8.592809 TCATTTGCCTAGTTTTCCACAAATTAT 58.407 29.630 0.00 0.00 36.01 1.28
373 374 9.218440 CATTTGCCTAGTTTTCCACAAATTATT 57.782 29.630 0.00 0.00 36.01 1.40
374 375 9.791801 ATTTGCCTAGTTTTCCACAAATTATTT 57.208 25.926 0.00 0.00 34.92 1.40
376 377 9.921637 TTGCCTAGTTTTCCACAAATTATTTAG 57.078 29.630 0.00 0.00 0.00 1.85
377 378 9.303116 TGCCTAGTTTTCCACAAATTATTTAGA 57.697 29.630 0.00 0.00 0.00 2.10
393 394 9.450807 AATTATTTAGAACAATGTATTCGCTGC 57.549 29.630 0.00 0.00 0.00 5.25
394 395 5.871465 TTTAGAACAATGTATTCGCTGCA 57.129 34.783 0.00 0.00 0.00 4.41
395 396 5.871465 TTAGAACAATGTATTCGCTGCAA 57.129 34.783 0.00 0.00 0.00 4.08
396 397 4.346734 AGAACAATGTATTCGCTGCAAG 57.653 40.909 0.00 0.00 0.00 4.01
397 398 4.002982 AGAACAATGTATTCGCTGCAAGA 58.997 39.130 0.00 0.00 34.07 3.02
398 399 4.455533 AGAACAATGTATTCGCTGCAAGAA 59.544 37.500 6.72 6.72 34.07 2.52
399 400 4.970662 ACAATGTATTCGCTGCAAGAAT 57.029 36.364 17.63 17.63 40.88 2.40
400 401 4.665212 ACAATGTATTCGCTGCAAGAATG 58.335 39.130 20.85 11.65 38.61 2.67
401 402 4.156556 ACAATGTATTCGCTGCAAGAATGT 59.843 37.500 20.85 12.14 38.61 2.71
402 403 3.745332 TGTATTCGCTGCAAGAATGTG 57.255 42.857 20.85 2.76 38.61 3.21
403 404 2.159531 TGTATTCGCTGCAAGAATGTGC 60.160 45.455 20.85 13.66 45.15 4.57
404 405 1.171308 ATTCGCTGCAAGAATGTGCT 58.829 45.000 14.13 0.00 45.17 4.40
405 406 0.953727 TTCGCTGCAAGAATGTGCTT 59.046 45.000 0.00 0.00 45.17 3.91
406 407 0.518636 TCGCTGCAAGAATGTGCTTC 59.481 50.000 0.00 0.00 45.17 3.86
407 408 0.791983 CGCTGCAAGAATGTGCTTCG 60.792 55.000 0.00 0.00 45.17 3.79
408 409 0.455633 GCTGCAAGAATGTGCTTCGG 60.456 55.000 0.00 0.00 45.17 4.30
409 410 1.159285 CTGCAAGAATGTGCTTCGGA 58.841 50.000 0.00 0.00 45.17 4.55
410 411 1.536766 CTGCAAGAATGTGCTTCGGAA 59.463 47.619 0.00 0.00 45.17 4.30
411 412 1.536766 TGCAAGAATGTGCTTCGGAAG 59.463 47.619 13.39 13.39 45.17 3.46
412 413 1.537202 GCAAGAATGTGCTTCGGAAGT 59.463 47.619 18.32 0.00 41.51 3.01
413 414 2.666619 GCAAGAATGTGCTTCGGAAGTG 60.667 50.000 18.32 7.77 41.51 3.16
414 415 2.549754 CAAGAATGTGCTTCGGAAGTGT 59.450 45.455 18.32 0.84 38.98 3.55
415 416 2.146342 AGAATGTGCTTCGGAAGTGTG 58.854 47.619 18.32 0.00 38.98 3.82
416 417 1.197721 GAATGTGCTTCGGAAGTGTGG 59.802 52.381 18.32 0.00 0.00 4.17
417 418 0.108585 ATGTGCTTCGGAAGTGTGGT 59.891 50.000 18.32 0.24 0.00 4.16
418 419 0.531974 TGTGCTTCGGAAGTGTGGTC 60.532 55.000 18.32 2.19 0.00 4.02
419 420 1.300620 TGCTTCGGAAGTGTGGTCG 60.301 57.895 18.32 0.00 0.00 4.79
420 421 1.300697 GCTTCGGAAGTGTGGTCGT 60.301 57.895 18.32 0.00 0.00 4.34
421 422 0.878961 GCTTCGGAAGTGTGGTCGTT 60.879 55.000 18.32 0.00 0.00 3.85
422 423 0.859232 CTTCGGAAGTGTGGTCGTTG 59.141 55.000 9.61 0.00 0.00 4.10
423 424 0.460722 TTCGGAAGTGTGGTCGTTGA 59.539 50.000 0.00 0.00 0.00 3.18
424 425 0.249155 TCGGAAGTGTGGTCGTTGAC 60.249 55.000 0.00 0.00 0.00 3.18
425 426 0.528901 CGGAAGTGTGGTCGTTGACA 60.529 55.000 0.00 0.00 33.68 3.58
426 427 1.217882 GGAAGTGTGGTCGTTGACAG 58.782 55.000 0.00 0.00 33.68 3.51
427 428 1.202486 GGAAGTGTGGTCGTTGACAGA 60.202 52.381 0.00 0.00 33.68 3.41
428 429 2.546778 GAAGTGTGGTCGTTGACAGAA 58.453 47.619 0.00 0.00 33.68 3.02
429 430 2.684001 AGTGTGGTCGTTGACAGAAA 57.316 45.000 0.00 0.00 33.68 2.52
430 431 2.277084 AGTGTGGTCGTTGACAGAAAC 58.723 47.619 0.00 0.00 33.68 2.78
431 432 2.004017 GTGTGGTCGTTGACAGAAACA 58.996 47.619 0.00 0.00 33.68 2.83
432 433 2.004017 TGTGGTCGTTGACAGAAACAC 58.996 47.619 0.00 0.00 33.68 3.32
433 434 2.004017 GTGGTCGTTGACAGAAACACA 58.996 47.619 0.00 0.00 33.68 3.72
434 435 2.612212 GTGGTCGTTGACAGAAACACAT 59.388 45.455 0.00 0.00 33.68 3.21
435 436 2.869801 TGGTCGTTGACAGAAACACATC 59.130 45.455 0.00 0.00 33.68 3.06
436 437 2.869801 GGTCGTTGACAGAAACACATCA 59.130 45.455 0.00 0.00 33.68 3.07
437 438 3.498397 GGTCGTTGACAGAAACACATCAT 59.502 43.478 0.00 0.00 33.68 2.45
438 439 4.688879 GGTCGTTGACAGAAACACATCATA 59.311 41.667 0.00 0.00 33.68 2.15
439 440 5.351465 GGTCGTTGACAGAAACACATCATAT 59.649 40.000 0.00 0.00 33.68 1.78
440 441 6.455646 GGTCGTTGACAGAAACACATCATATC 60.456 42.308 0.00 0.00 33.68 1.63
441 442 5.580691 TCGTTGACAGAAACACATCATATCC 59.419 40.000 0.00 0.00 0.00 2.59
442 443 5.351189 CGTTGACAGAAACACATCATATCCA 59.649 40.000 0.00 0.00 0.00 3.41
443 444 6.546395 GTTGACAGAAACACATCATATCCAC 58.454 40.000 0.00 0.00 0.00 4.02
444 445 5.803552 TGACAGAAACACATCATATCCACA 58.196 37.500 0.00 0.00 0.00 4.17
445 446 6.417258 TGACAGAAACACATCATATCCACAT 58.583 36.000 0.00 0.00 0.00 3.21
446 447 6.885918 TGACAGAAACACATCATATCCACATT 59.114 34.615 0.00 0.00 0.00 2.71
447 448 8.046107 TGACAGAAACACATCATATCCACATTA 58.954 33.333 0.00 0.00 0.00 1.90
448 449 8.213518 ACAGAAACACATCATATCCACATTAC 57.786 34.615 0.00 0.00 0.00 1.89
449 450 7.283127 ACAGAAACACATCATATCCACATTACC 59.717 37.037 0.00 0.00 0.00 2.85
450 451 7.282901 CAGAAACACATCATATCCACATTACCA 59.717 37.037 0.00 0.00 0.00 3.25
451 452 8.000709 AGAAACACATCATATCCACATTACCAT 58.999 33.333 0.00 0.00 0.00 3.55
452 453 7.750229 AACACATCATATCCACATTACCATC 57.250 36.000 0.00 0.00 0.00 3.51
453 454 7.083062 ACACATCATATCCACATTACCATCT 57.917 36.000 0.00 0.00 0.00 2.90
454 455 7.520798 ACACATCATATCCACATTACCATCTT 58.479 34.615 0.00 0.00 0.00 2.40
455 456 8.659527 ACACATCATATCCACATTACCATCTTA 58.340 33.333 0.00 0.00 0.00 2.10
456 457 9.506018 CACATCATATCCACATTACCATCTTAA 57.494 33.333 0.00 0.00 0.00 1.85
463 464 7.473735 TCCACATTACCATCTTAAAAATGCA 57.526 32.000 0.00 0.00 32.10 3.96
464 465 7.546358 TCCACATTACCATCTTAAAAATGCAG 58.454 34.615 0.00 0.00 32.10 4.41
465 466 7.178274 TCCACATTACCATCTTAAAAATGCAGT 59.822 33.333 0.00 0.00 32.10 4.40
466 467 7.818930 CCACATTACCATCTTAAAAATGCAGTT 59.181 33.333 0.00 0.00 32.10 3.16
467 468 9.853555 CACATTACCATCTTAAAAATGCAGTTA 57.146 29.630 0.00 0.00 32.10 2.24
473 474 9.995003 ACCATCTTAAAAATGCAGTTAATTTGA 57.005 25.926 0.00 0.00 0.00 2.69
485 486 8.883954 TGCAGTTAATTTGAATGTTTGAATCA 57.116 26.923 0.00 0.00 0.00 2.57
486 487 9.322773 TGCAGTTAATTTGAATGTTTGAATCAA 57.677 25.926 0.00 0.00 0.00 2.57
508 509 9.831737 ATCAATTTTTCGAATTCTACTCAGTTG 57.168 29.630 0.00 1.74 0.00 3.16
511 512 9.884465 AATTTTTCGAATTCTACTCAGTTGAAG 57.116 29.630 7.75 0.00 31.87 3.02
514 515 6.819397 TCGAATTCTACTCAGTTGAAGAGA 57.181 37.500 7.75 4.33 36.91 3.10
515 516 6.847400 TCGAATTCTACTCAGTTGAAGAGAG 58.153 40.000 7.75 0.41 36.91 3.20
518 519 3.093057 TCTACTCAGTTGAAGAGAGGGC 58.907 50.000 0.00 0.00 36.91 5.19
519 520 1.722034 ACTCAGTTGAAGAGAGGGCA 58.278 50.000 0.00 0.00 36.91 5.36
521 522 0.318441 TCAGTTGAAGAGAGGGCACG 59.682 55.000 0.00 0.00 0.00 5.34
526 527 1.118965 TGAAGAGAGGGCACGGAACA 61.119 55.000 0.00 0.00 0.00 3.18
542 543 1.815003 GAACAGGGCAATCTGGTCTTG 59.185 52.381 10.50 0.00 45.37 3.02
543 544 0.773644 ACAGGGCAATCTGGTCTTGT 59.226 50.000 6.04 0.00 38.98 3.16
546 547 3.010584 ACAGGGCAATCTGGTCTTGTATT 59.989 43.478 6.04 0.00 38.98 1.89
547 548 3.629398 CAGGGCAATCTGGTCTTGTATTC 59.371 47.826 0.00 0.00 0.00 1.75
596 597 4.967036 AGACAAGCTTAGAGCATTATCCC 58.033 43.478 0.00 0.00 45.56 3.85
733 735 3.295304 CTCACATCGACGGTGGCCA 62.295 63.158 13.58 0.00 36.90 5.36
736 738 4.082523 CATCGACGGTGGCCAGGT 62.083 66.667 5.11 7.56 0.00 4.00
800 806 1.302033 CTCCAAAGCTGTCGCCAGT 60.302 57.895 0.00 0.00 41.02 4.00
870 876 1.112113 TCTCGGCTTATCCACACTCC 58.888 55.000 0.00 0.00 34.01 3.85
909 915 2.201022 ACCACGTGACCTCTTCGCT 61.201 57.895 19.30 0.00 31.94 4.93
910 916 1.444553 CCACGTGACCTCTTCGCTC 60.445 63.158 19.30 0.00 31.94 5.03
1236 1242 1.609783 CAAGGCGGGGAAGAAGGAT 59.390 57.895 0.00 0.00 0.00 3.24
1239 1245 1.153147 GGCGGGGAAGAAGGATGAC 60.153 63.158 0.00 0.00 0.00 3.06
1566 1615 1.587043 CTGCGGACTTCGAGGAGACA 61.587 60.000 0.00 0.00 42.43 3.41
1569 1618 0.882474 CGGACTTCGAGGAGACACTT 59.118 55.000 0.00 0.00 42.43 3.16
1696 1745 4.704103 TGGACCTCGGCCAGAGCT 62.704 66.667 16.29 5.77 45.54 4.09
1782 1831 3.329889 TGGCAGATGGCGTTCCCT 61.330 61.111 1.68 0.00 46.16 4.20
1890 1939 2.595463 GCCACCAAGACTGCTGCA 60.595 61.111 0.88 0.88 0.00 4.41
2028 2077 1.666011 GTCGCAGGACTTGAGTGGA 59.334 57.895 0.00 0.00 40.15 4.02
2058 2107 1.226717 CAAGCTCGACGGACCTAGC 60.227 63.158 0.00 0.00 35.16 3.42
2059 2108 1.677966 AAGCTCGACGGACCTAGCA 60.678 57.895 8.03 0.00 37.44 3.49
2093 2142 0.037303 CCCAAGCAGGAGCAGAAGAA 59.963 55.000 0.00 0.00 45.49 2.52
2196 2257 2.342179 CAAGAAGAGAAGGACGAAGCC 58.658 52.381 0.00 0.00 0.00 4.35
2214 2275 1.205064 CAACGCCGACAGCAAGAAG 59.795 57.895 0.00 0.00 44.04 2.85
2223 2284 2.872245 CGACAGCAAGAAGGAAGACAAA 59.128 45.455 0.00 0.00 0.00 2.83
2226 2287 4.133078 ACAGCAAGAAGGAAGACAAAGAG 58.867 43.478 0.00 0.00 0.00 2.85
2227 2288 3.501445 CAGCAAGAAGGAAGACAAAGAGG 59.499 47.826 0.00 0.00 0.00 3.69
2228 2289 2.227626 GCAAGAAGGAAGACAAAGAGGC 59.772 50.000 0.00 0.00 0.00 4.70
2229 2290 2.464157 AGAAGGAAGACAAAGAGGCG 57.536 50.000 0.00 0.00 0.00 5.52
2230 2291 1.002544 AGAAGGAAGACAAAGAGGCGG 59.997 52.381 0.00 0.00 0.00 6.13
2231 2292 1.002087 GAAGGAAGACAAAGAGGCGGA 59.998 52.381 0.00 0.00 0.00 5.54
2232 2293 0.610687 AGGAAGACAAAGAGGCGGAG 59.389 55.000 0.00 0.00 0.00 4.63
2233 2294 0.391793 GGAAGACAAAGAGGCGGAGG 60.392 60.000 0.00 0.00 0.00 4.30
2242 2303 3.024356 AGGCGGAGGAGGAGGAGA 61.024 66.667 0.00 0.00 0.00 3.71
2245 2315 2.904866 CGGAGGAGGAGGAGAGCG 60.905 72.222 0.00 0.00 0.00 5.03
2388 2458 3.907927 CGACACGCTAGAAGAGGAG 57.092 57.895 0.00 0.00 0.00 3.69
2498 2568 1.118838 CTACTGGAGCAAGGAGAGGG 58.881 60.000 0.00 0.00 28.35 4.30
2512 2582 0.333993 AGAGGGCAATGGCAAGTCAT 59.666 50.000 9.51 0.00 43.71 3.06
2515 2585 1.031571 GGGCAATGGCAAGTCATCGA 61.032 55.000 9.51 0.00 43.71 3.59
2584 2654 2.579787 CCGACGAGGCTTGCTACG 60.580 66.667 0.37 5.70 0.00 3.51
2595 2665 1.376543 CTTGCTACGTCTCCGACCTA 58.623 55.000 0.00 0.00 37.88 3.08
2679 2749 0.036164 TTGACATCCCGGTTGTGAGG 59.964 55.000 11.65 0.33 0.00 3.86
2850 2920 2.613506 CGAGGTGGTCGGCAAAACC 61.614 63.158 0.00 0.00 45.58 3.27
2998 3068 3.157252 GGCGCCAGGAGAGGATCA 61.157 66.667 24.80 0.00 37.82 2.92
3036 3106 4.758251 CATGAGGCGCCGGTGACA 62.758 66.667 25.72 17.10 0.00 3.58
3048 3118 1.215647 GGTGACAGCGGACGAGATT 59.784 57.895 0.00 0.00 0.00 2.40
3066 3136 3.485431 CTGCCGTTCTCGCTGCAG 61.485 66.667 10.11 10.11 42.32 4.41
3072 3142 0.919981 CGTTCTCGCTGCAGAAGATC 59.080 55.000 20.43 15.94 32.89 2.75
3078 3148 0.100325 CGCTGCAGAAGATCGAGACT 59.900 55.000 20.43 0.00 0.00 3.24
3090 3160 1.239347 TCGAGACTATGGCCATCGAG 58.761 55.000 24.80 18.02 37.48 4.04
3321 3391 0.469917 CCATCGTGGTAATCCAGGCT 59.530 55.000 2.59 0.00 45.80 4.58
3372 3442 0.542702 CCAGGTTCAAGGTGGCCAAT 60.543 55.000 7.24 0.00 0.00 3.16
3543 3613 1.517257 GATCGGGACTGACGTGCTG 60.517 63.158 0.00 0.00 39.03 4.41
3624 3694 2.346803 GTGAAGATCGCAGCCAACTAA 58.653 47.619 0.00 0.00 0.00 2.24
3625 3695 2.742053 GTGAAGATCGCAGCCAACTAAA 59.258 45.455 0.00 0.00 0.00 1.85
3626 3696 3.188460 GTGAAGATCGCAGCCAACTAAAA 59.812 43.478 0.00 0.00 0.00 1.52
3627 3697 3.188460 TGAAGATCGCAGCCAACTAAAAC 59.812 43.478 0.00 0.00 0.00 2.43
3628 3698 3.059352 AGATCGCAGCCAACTAAAACT 57.941 42.857 0.00 0.00 0.00 2.66
3629 3699 4.202245 AGATCGCAGCCAACTAAAACTA 57.798 40.909 0.00 0.00 0.00 2.24
3678 3749 3.251729 TGCAGCTGAAACACTTCTTCATC 59.748 43.478 20.43 0.00 32.53 2.92
3694 3765 3.685139 TCATCTTCCACACCTCAGAAC 57.315 47.619 0.00 0.00 0.00 3.01
3697 3768 4.220821 TCATCTTCCACACCTCAGAACTAC 59.779 45.833 0.00 0.00 0.00 2.73
3725 3796 6.428159 ACTGAATTCCTGCACTTAACTTGTAG 59.572 38.462 2.27 0.00 0.00 2.74
3726 3797 5.181245 TGAATTCCTGCACTTAACTTGTAGC 59.819 40.000 2.27 0.00 0.00 3.58
3727 3798 3.762407 TCCTGCACTTAACTTGTAGCA 57.238 42.857 0.00 0.00 0.00 3.49
3728 3799 3.664107 TCCTGCACTTAACTTGTAGCAG 58.336 45.455 0.00 0.00 46.55 4.24
3730 3801 3.664107 CTGCACTTAACTTGTAGCAGGA 58.336 45.455 0.00 0.00 44.10 3.86
3731 3802 4.065088 CTGCACTTAACTTGTAGCAGGAA 58.935 43.478 0.00 0.00 44.10 3.36
3732 3803 4.456535 TGCACTTAACTTGTAGCAGGAAA 58.543 39.130 0.00 0.00 0.00 3.13
3733 3804 4.884744 TGCACTTAACTTGTAGCAGGAAAA 59.115 37.500 0.00 0.00 0.00 2.29
3759 3916 8.633075 TTGAAACTGTCAATGTTTTCTTCATC 57.367 30.769 0.00 0.00 41.47 2.92
3865 4022 7.678947 AGAAATGAGAGTATCCAAAGTGTTG 57.321 36.000 0.00 0.00 33.66 3.33
3869 4026 4.756642 TGAGAGTATCCAAAGTGTTGCTTG 59.243 41.667 0.00 0.00 34.30 4.01
3871 4028 3.490348 AGTATCCAAAGTGTTGCTTGCT 58.510 40.909 0.00 0.00 37.52 3.91
3914 4073 4.344679 ACAACTTGCAAGGGAATTTGATCA 59.655 37.500 29.18 0.00 0.00 2.92
3915 4074 4.525912 ACTTGCAAGGGAATTTGATCAC 57.474 40.909 29.18 0.00 0.00 3.06
3916 4075 4.154942 ACTTGCAAGGGAATTTGATCACT 58.845 39.130 29.18 0.93 33.45 3.41
3982 4141 1.438651 TCCAGTTTTCATCCTTCGCG 58.561 50.000 0.00 0.00 0.00 5.87
3983 4142 0.447801 CCAGTTTTCATCCTTCGCGG 59.552 55.000 6.13 0.00 0.00 6.46
4051 4210 7.322664 ACAAAATGACATTTTCTCACACAACT 58.677 30.769 20.73 0.00 40.27 3.16
4104 4263 2.948979 TGAAAACACACCAGGCTGTAAG 59.051 45.455 14.43 5.17 0.00 2.34
4105 4264 2.729028 AAACACACCAGGCTGTAAGT 57.271 45.000 14.43 5.84 35.30 2.24
4106 4265 2.256117 AACACACCAGGCTGTAAGTC 57.744 50.000 14.43 0.00 40.46 3.01
4125 4284 2.034179 GTCTGTAACCAAGGTGCCAAAC 59.966 50.000 0.00 0.00 0.00 2.93
4190 4349 8.969267 CGTCTAGAACATACAAATCCTTCATAC 58.031 37.037 0.00 0.00 0.00 2.39
4193 4352 5.527582 AGAACATACAAATCCTTCATACGGC 59.472 40.000 0.00 0.00 0.00 5.68
4234 4393 6.013725 TCCCTACAACTACAAATCACTCACAT 60.014 38.462 0.00 0.00 0.00 3.21
4242 4401 7.320399 ACTACAAATCACTCACATTCGTCATA 58.680 34.615 0.00 0.00 0.00 2.15
4277 4436 6.231211 ACTCAGAACTGTGGGTAAAATACTG 58.769 40.000 8.39 0.00 0.00 2.74
4297 4456 1.270518 GCTGAGTGCCTCTGAGAAACA 60.271 52.381 6.17 0.00 32.36 2.83
4456 4615 7.917505 AGCTTTCAAGAATGTACAACAGAAAAG 59.082 33.333 0.00 7.50 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.031495 AGGACTACAAGGGCTTCAGT 57.969 50.000 0.00 0.00 0.00 3.41
3 4 2.814336 CACAAAGGACTACAAGGGCTTC 59.186 50.000 0.00 0.00 0.00 3.86
5 6 1.545651 GCACAAAGGACTACAAGGGCT 60.546 52.381 0.00 0.00 0.00 5.19
6 7 0.881796 GCACAAAGGACTACAAGGGC 59.118 55.000 0.00 0.00 0.00 5.19
7 8 1.202879 TGGCACAAAGGACTACAAGGG 60.203 52.381 0.00 0.00 31.92 3.95
8 9 2.154462 CTGGCACAAAGGACTACAAGG 58.846 52.381 0.00 0.00 38.70 3.61
9 10 1.537202 GCTGGCACAAAGGACTACAAG 59.463 52.381 0.00 0.00 38.70 3.16
10 11 1.604604 GCTGGCACAAAGGACTACAA 58.395 50.000 0.00 0.00 38.70 2.41
11 12 0.250727 GGCTGGCACAAAGGACTACA 60.251 55.000 0.00 0.00 38.70 2.74
12 13 0.036875 AGGCTGGCACAAAGGACTAC 59.963 55.000 3.38 0.00 38.70 2.73
13 14 0.771127 AAGGCTGGCACAAAGGACTA 59.229 50.000 3.38 0.00 38.70 2.59
14 15 0.825010 CAAGGCTGGCACAAAGGACT 60.825 55.000 3.38 0.00 38.70 3.85
15 16 1.109323 ACAAGGCTGGCACAAAGGAC 61.109 55.000 3.38 0.00 38.70 3.85
16 17 0.396974 AACAAGGCTGGCACAAAGGA 60.397 50.000 3.38 0.00 38.70 3.36
17 18 0.032540 GAACAAGGCTGGCACAAAGG 59.967 55.000 3.38 0.00 38.70 3.11
18 19 1.035139 AGAACAAGGCTGGCACAAAG 58.965 50.000 3.38 0.00 38.70 2.77
19 20 1.953686 GTAGAACAAGGCTGGCACAAA 59.046 47.619 3.38 0.00 38.70 2.83
20 21 1.133945 TGTAGAACAAGGCTGGCACAA 60.134 47.619 3.38 0.00 38.70 3.33
21 22 0.472044 TGTAGAACAAGGCTGGCACA 59.528 50.000 3.38 0.00 0.00 4.57
22 23 1.470098 CATGTAGAACAAGGCTGGCAC 59.530 52.381 3.38 0.00 0.00 5.01
23 24 1.073763 ACATGTAGAACAAGGCTGGCA 59.926 47.619 0.00 0.00 0.00 4.92
24 25 1.826385 ACATGTAGAACAAGGCTGGC 58.174 50.000 0.00 0.00 0.00 4.85
25 26 4.074970 AGAAACATGTAGAACAAGGCTGG 58.925 43.478 0.00 0.00 0.00 4.85
26 27 5.695851 AAGAAACATGTAGAACAAGGCTG 57.304 39.130 0.00 0.00 0.00 4.85
27 28 6.296026 TGTAAGAAACATGTAGAACAAGGCT 58.704 36.000 0.00 0.00 31.43 4.58
28 29 6.554334 TGTAAGAAACATGTAGAACAAGGC 57.446 37.500 0.00 0.00 31.43 4.35
43 44 9.929180 GCTATGGACATATACTCATGTAAGAAA 57.071 33.333 0.00 0.00 39.25 2.52
44 45 9.314133 AGCTATGGACATATACTCATGTAAGAA 57.686 33.333 0.00 0.00 39.25 2.52
45 46 8.885693 AGCTATGGACATATACTCATGTAAGA 57.114 34.615 0.00 0.00 39.25 2.10
48 49 9.700831 ACATAGCTATGGACATATACTCATGTA 57.299 33.333 31.87 0.00 36.93 2.29
49 50 8.601047 ACATAGCTATGGACATATACTCATGT 57.399 34.615 31.87 9.80 38.16 3.21
52 53 9.920946 TGATACATAGCTATGGACATATACTCA 57.079 33.333 31.87 21.07 38.00 3.41
59 60 9.224267 GAACATTTGATACATAGCTATGGACAT 57.776 33.333 31.87 22.50 38.00 3.06
60 61 8.432013 AGAACATTTGATACATAGCTATGGACA 58.568 33.333 31.87 24.55 38.00 4.02
61 62 8.839310 AGAACATTTGATACATAGCTATGGAC 57.161 34.615 31.87 22.73 38.00 4.02
62 63 9.851686 AAAGAACATTTGATACATAGCTATGGA 57.148 29.630 31.87 27.05 38.00 3.41
87 88 5.574970 ATTTTCTGTTATGCCCCCAAAAA 57.425 34.783 0.00 0.00 0.00 1.94
88 89 6.688073 TTATTTTCTGTTATGCCCCCAAAA 57.312 33.333 0.00 0.00 0.00 2.44
89 90 6.441924 TGATTATTTTCTGTTATGCCCCCAAA 59.558 34.615 0.00 0.00 0.00 3.28
90 91 5.960811 TGATTATTTTCTGTTATGCCCCCAA 59.039 36.000 0.00 0.00 0.00 4.12
91 92 5.362430 GTGATTATTTTCTGTTATGCCCCCA 59.638 40.000 0.00 0.00 0.00 4.96
92 93 5.362430 TGTGATTATTTTCTGTTATGCCCCC 59.638 40.000 0.00 0.00 0.00 5.40
93 94 6.127479 TGTGTGATTATTTTCTGTTATGCCCC 60.127 38.462 0.00 0.00 0.00 5.80
94 95 6.862209 TGTGTGATTATTTTCTGTTATGCCC 58.138 36.000 0.00 0.00 0.00 5.36
95 96 7.975616 ACATGTGTGATTATTTTCTGTTATGCC 59.024 33.333 0.00 0.00 0.00 4.40
96 97 8.915871 ACATGTGTGATTATTTTCTGTTATGC 57.084 30.769 0.00 0.00 0.00 3.14
100 101 9.248291 GAACAACATGTGTGATTATTTTCTGTT 57.752 29.630 0.00 0.87 40.60 3.16
101 102 8.412456 TGAACAACATGTGTGATTATTTTCTGT 58.588 29.630 0.00 0.00 40.60 3.41
102 103 8.800231 TGAACAACATGTGTGATTATTTTCTG 57.200 30.769 0.00 0.00 40.60 3.02
135 136 9.451002 TCAAACCATCCGACAAATTAGTTATTA 57.549 29.630 0.00 0.00 0.00 0.98
136 137 8.343168 TCAAACCATCCGACAAATTAGTTATT 57.657 30.769 0.00 0.00 0.00 1.40
137 138 7.067008 CCTCAAACCATCCGACAAATTAGTTAT 59.933 37.037 0.00 0.00 0.00 1.89
138 139 6.373216 CCTCAAACCATCCGACAAATTAGTTA 59.627 38.462 0.00 0.00 0.00 2.24
139 140 5.183140 CCTCAAACCATCCGACAAATTAGTT 59.817 40.000 0.00 0.00 0.00 2.24
140 141 4.700213 CCTCAAACCATCCGACAAATTAGT 59.300 41.667 0.00 0.00 0.00 2.24
141 142 4.700213 ACCTCAAACCATCCGACAAATTAG 59.300 41.667 0.00 0.00 0.00 1.73
142 143 4.658063 ACCTCAAACCATCCGACAAATTA 58.342 39.130 0.00 0.00 0.00 1.40
143 144 3.496331 ACCTCAAACCATCCGACAAATT 58.504 40.909 0.00 0.00 0.00 1.82
144 145 3.154827 ACCTCAAACCATCCGACAAAT 57.845 42.857 0.00 0.00 0.00 2.32
145 146 2.649531 ACCTCAAACCATCCGACAAA 57.350 45.000 0.00 0.00 0.00 2.83
146 147 3.773418 TTACCTCAAACCATCCGACAA 57.227 42.857 0.00 0.00 0.00 3.18
147 148 3.992943 ATTACCTCAAACCATCCGACA 57.007 42.857 0.00 0.00 0.00 4.35
148 149 5.878669 ACTTTATTACCTCAAACCATCCGAC 59.121 40.000 0.00 0.00 0.00 4.79
149 150 6.057321 ACTTTATTACCTCAAACCATCCGA 57.943 37.500 0.00 0.00 0.00 4.55
150 151 6.037172 CAGACTTTATTACCTCAAACCATCCG 59.963 42.308 0.00 0.00 0.00 4.18
151 152 6.183360 GCAGACTTTATTACCTCAAACCATCC 60.183 42.308 0.00 0.00 0.00 3.51
152 153 6.183360 GGCAGACTTTATTACCTCAAACCATC 60.183 42.308 0.00 0.00 0.00 3.51
153 154 5.652452 GGCAGACTTTATTACCTCAAACCAT 59.348 40.000 0.00 0.00 0.00 3.55
154 155 5.007682 GGCAGACTTTATTACCTCAAACCA 58.992 41.667 0.00 0.00 0.00 3.67
155 156 5.007682 TGGCAGACTTTATTACCTCAAACC 58.992 41.667 0.00 0.00 0.00 3.27
156 157 6.206829 ACTTGGCAGACTTTATTACCTCAAAC 59.793 38.462 0.00 0.00 0.00 2.93
157 158 6.303839 ACTTGGCAGACTTTATTACCTCAAA 58.696 36.000 0.00 0.00 0.00 2.69
158 159 5.876357 ACTTGGCAGACTTTATTACCTCAA 58.124 37.500 0.00 0.00 0.00 3.02
159 160 5.499004 ACTTGGCAGACTTTATTACCTCA 57.501 39.130 0.00 0.00 0.00 3.86
160 161 6.535508 CAGTACTTGGCAGACTTTATTACCTC 59.464 42.308 0.00 0.00 0.00 3.85
161 162 6.013639 ACAGTACTTGGCAGACTTTATTACCT 60.014 38.462 0.00 0.00 0.00 3.08
162 163 6.171213 ACAGTACTTGGCAGACTTTATTACC 58.829 40.000 0.00 0.00 0.00 2.85
163 164 7.491696 CCTACAGTACTTGGCAGACTTTATTAC 59.508 40.741 0.00 0.00 0.00 1.89
164 165 7.364408 CCCTACAGTACTTGGCAGACTTTATTA 60.364 40.741 0.00 0.00 0.00 0.98
165 166 6.407202 CCTACAGTACTTGGCAGACTTTATT 58.593 40.000 0.00 0.00 0.00 1.40
166 167 5.104900 CCCTACAGTACTTGGCAGACTTTAT 60.105 44.000 0.00 0.00 0.00 1.40
167 168 4.222145 CCCTACAGTACTTGGCAGACTTTA 59.778 45.833 0.00 0.00 0.00 1.85
168 169 3.008049 CCCTACAGTACTTGGCAGACTTT 59.992 47.826 0.00 0.00 0.00 2.66
169 170 2.567615 CCCTACAGTACTTGGCAGACTT 59.432 50.000 0.00 0.00 0.00 3.01
170 171 2.180276 CCCTACAGTACTTGGCAGACT 58.820 52.381 0.00 0.00 0.00 3.24
171 172 1.207329 CCCCTACAGTACTTGGCAGAC 59.793 57.143 0.00 0.00 0.00 3.51
172 173 1.568504 CCCCTACAGTACTTGGCAGA 58.431 55.000 0.00 0.00 0.00 4.26
173 174 0.107654 GCCCCTACAGTACTTGGCAG 60.108 60.000 10.61 0.00 38.73 4.85
174 175 0.546747 AGCCCCTACAGTACTTGGCA 60.547 55.000 15.49 0.00 41.33 4.92
175 176 0.618981 AAGCCCCTACAGTACTTGGC 59.381 55.000 0.00 0.71 39.17 4.52
176 177 1.209747 GGAAGCCCCTACAGTACTTGG 59.790 57.143 0.00 0.00 0.00 3.61
177 178 2.693267 GGAAGCCCCTACAGTACTTG 57.307 55.000 0.00 0.00 0.00 3.16
189 190 5.262009 ACAAAAAGACTATAAGGGAAGCCC 58.738 41.667 0.00 0.00 45.90 5.19
190 191 5.944007 TGACAAAAAGACTATAAGGGAAGCC 59.056 40.000 0.00 0.00 0.00 4.35
191 192 7.448748 TTGACAAAAAGACTATAAGGGAAGC 57.551 36.000 0.00 0.00 0.00 3.86
215 216 2.093021 TGCTTGGCTGGCTTTTCTTTTT 60.093 40.909 2.00 0.00 0.00 1.94
216 217 1.485895 TGCTTGGCTGGCTTTTCTTTT 59.514 42.857 2.00 0.00 0.00 2.27
217 218 1.122227 TGCTTGGCTGGCTTTTCTTT 58.878 45.000 2.00 0.00 0.00 2.52
218 219 1.345063 ATGCTTGGCTGGCTTTTCTT 58.655 45.000 2.00 0.00 0.00 2.52
219 220 1.345063 AATGCTTGGCTGGCTTTTCT 58.655 45.000 2.00 0.00 0.00 2.52
220 221 2.174363 AAATGCTTGGCTGGCTTTTC 57.826 45.000 2.00 0.00 33.75 2.29
221 222 2.613725 GCTAAATGCTTGGCTGGCTTTT 60.614 45.455 15.49 15.49 39.31 2.27
222 223 1.066645 GCTAAATGCTTGGCTGGCTTT 60.067 47.619 2.00 0.00 36.19 3.51
223 224 0.533951 GCTAAATGCTTGGCTGGCTT 59.466 50.000 2.00 0.00 36.19 4.35
224 225 0.612732 TGCTAAATGCTTGGCTGGCT 60.613 50.000 2.00 0.00 39.64 4.75
225 226 0.462789 ATGCTAAATGCTTGGCTGGC 59.537 50.000 0.00 0.00 39.64 4.85
226 227 2.093869 ACAATGCTAAATGCTTGGCTGG 60.094 45.455 0.00 0.00 39.64 4.85
227 228 2.927477 CACAATGCTAAATGCTTGGCTG 59.073 45.455 0.00 0.00 39.64 4.85
228 229 2.564062 ACACAATGCTAAATGCTTGGCT 59.436 40.909 0.00 0.00 39.64 4.75
229 230 2.963432 ACACAATGCTAAATGCTTGGC 58.037 42.857 0.00 0.00 43.37 4.52
230 231 3.609373 CGAACACAATGCTAAATGCTTGG 59.391 43.478 0.00 0.00 43.37 3.61
231 232 3.609373 CCGAACACAATGCTAAATGCTTG 59.391 43.478 0.00 0.00 43.37 4.01
232 233 3.255642 ACCGAACACAATGCTAAATGCTT 59.744 39.130 0.00 0.00 43.37 3.91
233 234 2.819608 ACCGAACACAATGCTAAATGCT 59.180 40.909 0.00 0.00 43.37 3.79
234 235 3.216147 ACCGAACACAATGCTAAATGC 57.784 42.857 0.00 0.00 43.25 3.56
235 236 5.218885 TGAAACCGAACACAATGCTAAATG 58.781 37.500 0.00 0.00 0.00 2.32
236 237 5.446143 TGAAACCGAACACAATGCTAAAT 57.554 34.783 0.00 0.00 0.00 1.40
237 238 4.902443 TGAAACCGAACACAATGCTAAA 57.098 36.364 0.00 0.00 0.00 1.85
238 239 4.576873 TCTTGAAACCGAACACAATGCTAA 59.423 37.500 0.00 0.00 0.00 3.09
239 240 4.130857 TCTTGAAACCGAACACAATGCTA 58.869 39.130 0.00 0.00 0.00 3.49
240 241 2.948979 TCTTGAAACCGAACACAATGCT 59.051 40.909 0.00 0.00 0.00 3.79
241 242 3.347958 TCTTGAAACCGAACACAATGC 57.652 42.857 0.00 0.00 0.00 3.56
242 243 4.667262 TGTTCTTGAAACCGAACACAATG 58.333 39.130 0.00 0.00 43.10 2.82
243 244 4.974368 TGTTCTTGAAACCGAACACAAT 57.026 36.364 0.00 0.00 43.10 2.71
244 245 4.768130 TTGTTCTTGAAACCGAACACAA 57.232 36.364 4.52 0.00 46.35 3.33
245 246 4.456222 TCTTTGTTCTTGAAACCGAACACA 59.544 37.500 4.52 0.00 46.35 3.72
246 247 4.976987 TCTTTGTTCTTGAAACCGAACAC 58.023 39.130 4.52 0.00 46.35 3.32
247 248 5.124776 ACATCTTTGTTCTTGAAACCGAACA 59.875 36.000 0.00 0.00 45.41 3.18
248 249 5.578776 ACATCTTTGTTCTTGAAACCGAAC 58.421 37.500 0.00 0.00 39.85 3.95
249 250 5.828299 ACATCTTTGTTCTTGAAACCGAA 57.172 34.783 0.00 0.00 29.55 4.30
250 251 5.237779 GGTACATCTTTGTTCTTGAAACCGA 59.762 40.000 0.00 0.00 37.28 4.69
251 252 5.238650 AGGTACATCTTTGTTCTTGAAACCG 59.761 40.000 0.00 0.00 37.28 4.44
252 253 6.438763 CAGGTACATCTTTGTTCTTGAAACC 58.561 40.000 0.00 0.00 33.75 3.27
253 254 5.915196 GCAGGTACATCTTTGTTCTTGAAAC 59.085 40.000 0.00 0.00 33.75 2.78
254 255 5.277779 CGCAGGTACATCTTTGTTCTTGAAA 60.278 40.000 0.00 0.00 33.75 2.69
255 256 4.213270 CGCAGGTACATCTTTGTTCTTGAA 59.787 41.667 0.00 0.00 33.75 2.69
256 257 3.745975 CGCAGGTACATCTTTGTTCTTGA 59.254 43.478 0.00 0.00 33.75 3.02
257 258 3.667960 GCGCAGGTACATCTTTGTTCTTG 60.668 47.826 0.30 0.00 37.28 3.02
258 259 2.484264 GCGCAGGTACATCTTTGTTCTT 59.516 45.455 0.30 0.00 37.28 2.52
259 260 2.076863 GCGCAGGTACATCTTTGTTCT 58.923 47.619 0.30 0.00 37.28 3.01
260 261 2.076863 AGCGCAGGTACATCTTTGTTC 58.923 47.619 11.47 0.00 37.28 3.18
261 262 1.806542 CAGCGCAGGTACATCTTTGTT 59.193 47.619 11.47 0.00 37.28 2.83
262 263 1.442769 CAGCGCAGGTACATCTTTGT 58.557 50.000 11.47 0.00 39.98 2.83
263 264 0.097674 GCAGCGCAGGTACATCTTTG 59.902 55.000 11.47 0.00 35.08 2.77
264 265 1.026718 GGCAGCGCAGGTACATCTTT 61.027 55.000 11.47 0.00 35.08 2.52
265 266 1.450312 GGCAGCGCAGGTACATCTT 60.450 57.895 11.47 0.00 35.08 2.40
266 267 2.184020 TTGGCAGCGCAGGTACATCT 62.184 55.000 11.47 0.00 35.08 2.90
267 268 1.097547 ATTGGCAGCGCAGGTACATC 61.098 55.000 11.47 0.00 35.08 3.06
268 269 0.680921 AATTGGCAGCGCAGGTACAT 60.681 50.000 11.47 0.00 35.08 2.29
269 270 0.893270 AAATTGGCAGCGCAGGTACA 60.893 50.000 11.47 2.32 35.08 2.90
270 271 0.243636 AAAATTGGCAGCGCAGGTAC 59.756 50.000 11.47 0.00 35.08 3.34
271 272 0.965439 AAAAATTGGCAGCGCAGGTA 59.035 45.000 11.47 0.00 35.08 3.08
272 273 1.747774 AAAAATTGGCAGCGCAGGT 59.252 47.368 11.47 0.00 41.48 4.00
273 274 4.679412 AAAAATTGGCAGCGCAGG 57.321 50.000 11.47 1.51 0.00 4.85
287 288 5.596836 ACCAGAGTGCATTTTCAGAAAAA 57.403 34.783 12.38 0.00 38.66 1.94
288 289 5.350633 CAACCAGAGTGCATTTTCAGAAAA 58.649 37.500 10.80 10.80 34.41 2.29
289 290 4.737352 GCAACCAGAGTGCATTTTCAGAAA 60.737 41.667 0.00 0.00 0.00 2.52
290 291 3.243501 GCAACCAGAGTGCATTTTCAGAA 60.244 43.478 0.00 0.00 0.00 3.02
291 292 2.294233 GCAACCAGAGTGCATTTTCAGA 59.706 45.455 0.00 0.00 0.00 3.27
292 293 2.034939 TGCAACCAGAGTGCATTTTCAG 59.965 45.455 0.00 0.00 33.24 3.02
293 294 2.030371 TGCAACCAGAGTGCATTTTCA 58.970 42.857 0.00 0.00 33.24 2.69
294 295 2.798976 TGCAACCAGAGTGCATTTTC 57.201 45.000 0.00 0.00 33.24 2.29
295 296 2.804212 GCTTGCAACCAGAGTGCATTTT 60.804 45.455 0.00 0.00 38.43 1.82
296 297 1.269936 GCTTGCAACCAGAGTGCATTT 60.270 47.619 0.00 0.00 38.43 2.32
297 298 0.316204 GCTTGCAACCAGAGTGCATT 59.684 50.000 0.00 0.00 38.43 3.56
298 299 0.824595 TGCTTGCAACCAGAGTGCAT 60.825 50.000 0.00 0.00 38.43 3.96
299 300 0.824595 ATGCTTGCAACCAGAGTGCA 60.825 50.000 9.35 9.35 36.72 4.57
300 301 0.388134 CATGCTTGCAACCAGAGTGC 60.388 55.000 0.00 0.00 0.00 4.40
301 302 0.956633 ACATGCTTGCAACCAGAGTG 59.043 50.000 0.00 0.00 0.00 3.51
302 303 0.956633 CACATGCTTGCAACCAGAGT 59.043 50.000 0.00 0.00 0.00 3.24
303 304 0.242825 CCACATGCTTGCAACCAGAG 59.757 55.000 0.00 0.00 0.00 3.35
304 305 0.178995 TCCACATGCTTGCAACCAGA 60.179 50.000 0.00 0.00 0.00 3.86
305 306 0.675083 TTCCACATGCTTGCAACCAG 59.325 50.000 0.00 0.00 0.00 4.00
306 307 1.068895 CTTTCCACATGCTTGCAACCA 59.931 47.619 0.00 0.00 0.00 3.67
307 308 1.787012 CTTTCCACATGCTTGCAACC 58.213 50.000 0.00 0.00 0.00 3.77
308 309 1.142474 GCTTTCCACATGCTTGCAAC 58.858 50.000 0.00 0.00 0.00 4.17
309 310 0.751452 TGCTTTCCACATGCTTGCAA 59.249 45.000 0.00 0.00 0.00 4.08
310 311 0.970640 ATGCTTTCCACATGCTTGCA 59.029 45.000 0.00 0.00 0.00 4.08
311 312 2.480759 CCTATGCTTTCCACATGCTTGC 60.481 50.000 0.00 0.00 0.00 4.01
312 313 2.756760 ACCTATGCTTTCCACATGCTTG 59.243 45.455 0.00 0.00 0.00 4.01
313 314 3.091633 ACCTATGCTTTCCACATGCTT 57.908 42.857 0.00 0.00 0.00 3.91
314 315 2.814805 ACCTATGCTTTCCACATGCT 57.185 45.000 0.00 0.00 0.00 3.79
315 316 3.874392 AAACCTATGCTTTCCACATGC 57.126 42.857 0.00 0.00 0.00 4.06
316 317 5.138125 ACAAAACCTATGCTTTCCACATG 57.862 39.130 0.00 0.00 0.00 3.21
317 318 6.127366 CCATACAAAACCTATGCTTTCCACAT 60.127 38.462 0.00 0.00 0.00 3.21
318 319 5.184864 CCATACAAAACCTATGCTTTCCACA 59.815 40.000 0.00 0.00 0.00 4.17
319 320 5.185056 ACCATACAAAACCTATGCTTTCCAC 59.815 40.000 0.00 0.00 0.00 4.02
320 321 5.184864 CACCATACAAAACCTATGCTTTCCA 59.815 40.000 0.00 0.00 0.00 3.53
321 322 5.650543 CACCATACAAAACCTATGCTTTCC 58.349 41.667 0.00 0.00 0.00 3.13
322 323 5.102313 GCACCATACAAAACCTATGCTTTC 58.898 41.667 0.00 0.00 0.00 2.62
323 324 4.772100 AGCACCATACAAAACCTATGCTTT 59.228 37.500 0.00 0.00 39.02 3.51
324 325 4.344104 AGCACCATACAAAACCTATGCTT 58.656 39.130 0.00 0.00 39.02 3.91
325 326 3.947834 GAGCACCATACAAAACCTATGCT 59.052 43.478 0.00 0.00 44.49 3.79
326 327 3.694072 TGAGCACCATACAAAACCTATGC 59.306 43.478 0.00 0.00 0.00 3.14
327 328 6.455360 AATGAGCACCATACAAAACCTATG 57.545 37.500 0.00 0.00 34.45 2.23
328 329 6.627953 GCAAATGAGCACCATACAAAACCTAT 60.628 38.462 0.00 0.00 34.45 2.57
329 330 5.336372 GCAAATGAGCACCATACAAAACCTA 60.336 40.000 0.00 0.00 34.45 3.08
330 331 4.561326 GCAAATGAGCACCATACAAAACCT 60.561 41.667 0.00 0.00 34.45 3.50
331 332 3.679502 GCAAATGAGCACCATACAAAACC 59.320 43.478 0.00 0.00 34.45 3.27
332 333 3.679502 GGCAAATGAGCACCATACAAAAC 59.320 43.478 0.00 0.00 34.45 2.43
333 334 3.577848 AGGCAAATGAGCACCATACAAAA 59.422 39.130 0.00 0.00 34.45 2.44
334 335 3.164268 AGGCAAATGAGCACCATACAAA 58.836 40.909 0.00 0.00 34.45 2.83
335 336 2.806434 AGGCAAATGAGCACCATACAA 58.194 42.857 0.00 0.00 34.45 2.41
336 337 2.512692 AGGCAAATGAGCACCATACA 57.487 45.000 0.00 0.00 34.45 2.29
337 338 3.545703 ACTAGGCAAATGAGCACCATAC 58.454 45.455 0.00 0.00 34.45 2.39
338 339 3.931907 ACTAGGCAAATGAGCACCATA 57.068 42.857 0.00 0.00 34.45 2.74
339 340 2.814805 ACTAGGCAAATGAGCACCAT 57.185 45.000 0.00 0.00 36.99 3.55
340 341 2.584835 AACTAGGCAAATGAGCACCA 57.415 45.000 0.00 0.00 35.83 4.17
341 342 3.367395 GGAAAACTAGGCAAATGAGCACC 60.367 47.826 0.00 0.00 35.83 5.01
342 343 3.255642 TGGAAAACTAGGCAAATGAGCAC 59.744 43.478 0.00 0.00 35.83 4.40
343 344 3.255642 GTGGAAAACTAGGCAAATGAGCA 59.744 43.478 0.00 0.00 35.83 4.26
344 345 3.255642 TGTGGAAAACTAGGCAAATGAGC 59.744 43.478 0.00 0.00 0.00 4.26
345 346 5.452078 TTGTGGAAAACTAGGCAAATGAG 57.548 39.130 0.00 0.00 0.00 2.90
346 347 5.860941 TTTGTGGAAAACTAGGCAAATGA 57.139 34.783 0.00 0.00 0.00 2.57
347 348 8.776376 ATAATTTGTGGAAAACTAGGCAAATG 57.224 30.769 0.00 0.00 0.00 2.32
348 349 9.791801 AAATAATTTGTGGAAAACTAGGCAAAT 57.208 25.926 0.00 0.00 0.00 2.32
350 351 9.921637 CTAAATAATTTGTGGAAAACTAGGCAA 57.078 29.630 0.00 0.00 0.00 4.52
351 352 9.303116 TCTAAATAATTTGTGGAAAACTAGGCA 57.697 29.630 0.00 0.00 0.00 4.75
367 368 9.450807 GCAGCGAATACATTGTTCTAAATAATT 57.549 29.630 0.00 0.00 0.00 1.40
368 369 8.620416 TGCAGCGAATACATTGTTCTAAATAAT 58.380 29.630 0.00 0.00 0.00 1.28
369 370 7.980062 TGCAGCGAATACATTGTTCTAAATAA 58.020 30.769 0.00 0.00 0.00 1.40
370 371 7.546778 TGCAGCGAATACATTGTTCTAAATA 57.453 32.000 0.00 0.00 0.00 1.40
371 372 6.435430 TGCAGCGAATACATTGTTCTAAAT 57.565 33.333 0.00 0.00 0.00 1.40
372 373 5.871465 TGCAGCGAATACATTGTTCTAAA 57.129 34.783 0.00 0.00 0.00 1.85
373 374 5.641636 TCTTGCAGCGAATACATTGTTCTAA 59.358 36.000 0.00 0.00 0.00 2.10
374 375 5.175127 TCTTGCAGCGAATACATTGTTCTA 58.825 37.500 0.00 0.00 0.00 2.10
375 376 4.002982 TCTTGCAGCGAATACATTGTTCT 58.997 39.130 0.00 0.00 0.00 3.01
376 377 4.340894 TCTTGCAGCGAATACATTGTTC 57.659 40.909 0.00 0.00 0.00 3.18
377 378 4.764679 TTCTTGCAGCGAATACATTGTT 57.235 36.364 0.00 0.00 0.00 2.83
378 379 4.156556 ACATTCTTGCAGCGAATACATTGT 59.843 37.500 11.51 0.00 30.40 2.71
379 380 4.497966 CACATTCTTGCAGCGAATACATTG 59.502 41.667 11.51 5.37 30.40 2.82
380 381 4.665212 CACATTCTTGCAGCGAATACATT 58.335 39.130 11.51 0.00 30.40 2.71
381 382 3.488047 GCACATTCTTGCAGCGAATACAT 60.488 43.478 11.51 1.30 42.49 2.29
382 383 2.159531 GCACATTCTTGCAGCGAATACA 60.160 45.455 11.51 0.00 42.49 2.29
383 384 2.096496 AGCACATTCTTGCAGCGAATAC 59.904 45.455 11.51 6.38 45.62 1.89
384 385 2.358957 AGCACATTCTTGCAGCGAATA 58.641 42.857 11.51 0.00 45.62 1.75
385 386 1.171308 AGCACATTCTTGCAGCGAAT 58.829 45.000 7.31 7.31 45.62 3.34
386 387 0.953727 AAGCACATTCTTGCAGCGAA 59.046 45.000 3.42 3.42 45.62 4.70
387 388 0.518636 GAAGCACATTCTTGCAGCGA 59.481 50.000 0.00 0.00 45.62 4.93
388 389 0.791983 CGAAGCACATTCTTGCAGCG 60.792 55.000 0.00 0.00 45.62 5.18
389 390 0.455633 CCGAAGCACATTCTTGCAGC 60.456 55.000 0.00 0.00 45.62 5.25
390 391 1.159285 TCCGAAGCACATTCTTGCAG 58.841 50.000 0.00 0.00 45.62 4.41
391 392 1.536766 CTTCCGAAGCACATTCTTGCA 59.463 47.619 0.00 0.00 45.62 4.08
392 393 1.537202 ACTTCCGAAGCACATTCTTGC 59.463 47.619 8.11 0.00 43.34 4.01
393 394 2.549754 ACACTTCCGAAGCACATTCTTG 59.450 45.455 8.11 0.00 35.61 3.02
394 395 2.549754 CACACTTCCGAAGCACATTCTT 59.450 45.455 8.11 0.00 35.61 2.52
395 396 2.146342 CACACTTCCGAAGCACATTCT 58.854 47.619 8.11 0.00 35.61 2.40
396 397 1.197721 CCACACTTCCGAAGCACATTC 59.802 52.381 8.11 0.00 34.31 2.67
397 398 1.238439 CCACACTTCCGAAGCACATT 58.762 50.000 8.11 0.00 0.00 2.71
398 399 0.108585 ACCACACTTCCGAAGCACAT 59.891 50.000 8.11 0.00 0.00 3.21
399 400 0.531974 GACCACACTTCCGAAGCACA 60.532 55.000 8.11 0.00 0.00 4.57
400 401 1.557443 CGACCACACTTCCGAAGCAC 61.557 60.000 8.11 0.00 0.00 4.40
401 402 1.300620 CGACCACACTTCCGAAGCA 60.301 57.895 8.11 0.00 0.00 3.91
402 403 0.878961 AACGACCACACTTCCGAAGC 60.879 55.000 8.11 0.00 0.00 3.86
403 404 0.859232 CAACGACCACACTTCCGAAG 59.141 55.000 6.59 6.59 0.00 3.79
404 405 0.460722 TCAACGACCACACTTCCGAA 59.539 50.000 0.00 0.00 0.00 4.30
405 406 0.249155 GTCAACGACCACACTTCCGA 60.249 55.000 0.00 0.00 0.00 4.55
406 407 0.528901 TGTCAACGACCACACTTCCG 60.529 55.000 0.00 0.00 0.00 4.30
407 408 1.202486 TCTGTCAACGACCACACTTCC 60.202 52.381 0.00 0.00 0.00 3.46
408 409 2.218953 TCTGTCAACGACCACACTTC 57.781 50.000 0.00 0.00 0.00 3.01
409 410 2.676342 GTTTCTGTCAACGACCACACTT 59.324 45.455 0.00 0.00 0.00 3.16
410 411 2.277084 GTTTCTGTCAACGACCACACT 58.723 47.619 0.00 0.00 0.00 3.55
411 412 2.004017 TGTTTCTGTCAACGACCACAC 58.996 47.619 0.00 0.00 0.00 3.82
412 413 2.004017 GTGTTTCTGTCAACGACCACA 58.996 47.619 0.00 0.00 0.00 4.17
413 414 2.004017 TGTGTTTCTGTCAACGACCAC 58.996 47.619 0.00 0.00 0.00 4.16
414 415 2.388310 TGTGTTTCTGTCAACGACCA 57.612 45.000 0.00 0.00 0.00 4.02
415 416 2.869801 TGATGTGTTTCTGTCAACGACC 59.130 45.455 0.00 0.00 0.00 4.79
416 417 4.732285 ATGATGTGTTTCTGTCAACGAC 57.268 40.909 0.00 0.00 0.00 4.34
417 418 5.580691 GGATATGATGTGTTTCTGTCAACGA 59.419 40.000 0.00 0.00 0.00 3.85
418 419 5.351189 TGGATATGATGTGTTTCTGTCAACG 59.649 40.000 0.00 0.00 0.00 4.10
419 420 6.149308 TGTGGATATGATGTGTTTCTGTCAAC 59.851 38.462 0.00 0.00 0.00 3.18
420 421 6.237154 TGTGGATATGATGTGTTTCTGTCAA 58.763 36.000 0.00 0.00 0.00 3.18
421 422 5.803552 TGTGGATATGATGTGTTTCTGTCA 58.196 37.500 0.00 0.00 0.00 3.58
422 423 6.932356 ATGTGGATATGATGTGTTTCTGTC 57.068 37.500 0.00 0.00 0.00 3.51
423 424 7.283127 GGTAATGTGGATATGATGTGTTTCTGT 59.717 37.037 0.00 0.00 0.00 3.41
424 425 7.282901 TGGTAATGTGGATATGATGTGTTTCTG 59.717 37.037 0.00 0.00 0.00 3.02
425 426 7.345691 TGGTAATGTGGATATGATGTGTTTCT 58.654 34.615 0.00 0.00 0.00 2.52
426 427 7.566760 TGGTAATGTGGATATGATGTGTTTC 57.433 36.000 0.00 0.00 0.00 2.78
427 428 8.000709 AGATGGTAATGTGGATATGATGTGTTT 58.999 33.333 0.00 0.00 0.00 2.83
428 429 7.520798 AGATGGTAATGTGGATATGATGTGTT 58.479 34.615 0.00 0.00 0.00 3.32
429 430 7.083062 AGATGGTAATGTGGATATGATGTGT 57.917 36.000 0.00 0.00 0.00 3.72
430 431 7.991084 AAGATGGTAATGTGGATATGATGTG 57.009 36.000 0.00 0.00 0.00 3.21
437 438 9.194972 TGCATTTTTAAGATGGTAATGTGGATA 57.805 29.630 0.00 0.00 0.00 2.59
438 439 8.076910 TGCATTTTTAAGATGGTAATGTGGAT 57.923 30.769 0.00 0.00 0.00 3.41
439 440 7.178274 ACTGCATTTTTAAGATGGTAATGTGGA 59.822 33.333 0.00 0.00 0.00 4.02
440 441 7.322664 ACTGCATTTTTAAGATGGTAATGTGG 58.677 34.615 0.00 0.00 0.00 4.17
441 442 8.761575 AACTGCATTTTTAAGATGGTAATGTG 57.238 30.769 0.00 0.00 0.00 3.21
447 448 9.995003 TCAAATTAACTGCATTTTTAAGATGGT 57.005 25.926 0.00 0.00 0.00 3.55
459 460 9.491675 TGATTCAAACATTCAAATTAACTGCAT 57.508 25.926 0.00 0.00 0.00 3.96
460 461 8.883954 TGATTCAAACATTCAAATTAACTGCA 57.116 26.923 0.00 0.00 0.00 4.41
482 483 9.831737 CAACTGAGTAGAATTCGAAAAATTGAT 57.168 29.630 0.00 0.00 0.00 2.57
483 484 9.051679 TCAACTGAGTAGAATTCGAAAAATTGA 57.948 29.630 0.00 4.23 0.00 2.57
484 485 9.663904 TTCAACTGAGTAGAATTCGAAAAATTG 57.336 29.630 0.00 2.03 0.00 2.32
485 486 9.884465 CTTCAACTGAGTAGAATTCGAAAAATT 57.116 29.630 0.00 0.00 0.00 1.82
486 487 9.273016 TCTTCAACTGAGTAGAATTCGAAAAAT 57.727 29.630 0.00 0.00 0.00 1.82
487 488 8.657074 TCTTCAACTGAGTAGAATTCGAAAAA 57.343 30.769 0.00 0.00 0.00 1.94
491 492 6.127869 CCTCTCTTCAACTGAGTAGAATTCGA 60.128 42.308 0.00 0.00 33.59 3.71
492 493 6.033341 CCTCTCTTCAACTGAGTAGAATTCG 58.967 44.000 0.00 0.00 33.59 3.34
497 498 3.093057 GCCCTCTCTTCAACTGAGTAGA 58.907 50.000 0.00 0.00 33.59 2.59
503 504 0.671781 CCGTGCCCTCTCTTCAACTG 60.672 60.000 0.00 0.00 0.00 3.16
504 505 0.832135 TCCGTGCCCTCTCTTCAACT 60.832 55.000 0.00 0.00 0.00 3.16
507 508 1.118965 TGTTCCGTGCCCTCTCTTCA 61.119 55.000 0.00 0.00 0.00 3.02
508 509 0.390472 CTGTTCCGTGCCCTCTCTTC 60.390 60.000 0.00 0.00 0.00 2.87
511 512 2.266055 CCTGTTCCGTGCCCTCTC 59.734 66.667 0.00 0.00 0.00 3.20
515 516 4.966787 TTGCCCTGTTCCGTGCCC 62.967 66.667 0.00 0.00 0.00 5.36
518 519 1.308069 CCAGATTGCCCTGTTCCGTG 61.308 60.000 0.00 0.00 32.43 4.94
519 520 1.002134 CCAGATTGCCCTGTTCCGT 60.002 57.895 0.00 0.00 32.43 4.69
521 522 0.329596 AGACCAGATTGCCCTGTTCC 59.670 55.000 0.00 0.00 32.43 3.62
526 527 3.266772 TGAATACAAGACCAGATTGCCCT 59.733 43.478 0.00 0.00 0.00 5.19
567 568 9.790344 ATAATGCTCTAAGCTTGTCTCAATATT 57.210 29.630 9.86 2.79 42.97 1.28
568 569 9.434420 GATAATGCTCTAAGCTTGTCTCAATAT 57.566 33.333 9.86 5.25 42.97 1.28
569 570 7.875041 GGATAATGCTCTAAGCTTGTCTCAATA 59.125 37.037 9.86 0.55 42.97 1.90
570 571 6.709846 GGATAATGCTCTAAGCTTGTCTCAAT 59.290 38.462 9.86 0.00 42.97 2.57
571 572 6.051717 GGATAATGCTCTAAGCTTGTCTCAA 58.948 40.000 9.86 0.00 42.97 3.02
572 573 5.453903 GGGATAATGCTCTAAGCTTGTCTCA 60.454 44.000 9.86 2.50 42.97 3.27
719 721 4.082523 ACCTGGCCACCGTCGATG 62.083 66.667 0.00 0.00 0.00 3.84
766 768 4.477119 AGGTACTCGGGAGGGGGC 62.477 72.222 0.00 0.00 31.41 5.80
870 876 1.134965 GTAGTGTGGTGCAGCTAGAGG 60.135 57.143 18.08 0.00 0.00 3.69
1236 1242 2.356194 TCGTCCTCGTCGTCGTCA 60.356 61.111 1.33 0.00 38.33 4.35
1239 1245 3.473166 TCGTCGTCCTCGTCGTCG 61.473 66.667 0.00 0.00 45.27 5.12
1548 1597 1.602605 TGTCTCCTCGAAGTCCGCA 60.603 57.895 0.00 0.00 38.37 5.69
1566 1615 1.768112 CGTGGCAACGGACGAAAAGT 61.768 55.000 5.48 0.00 46.25 2.66
1696 1745 4.373116 GGCGCTCAAGTCCACCGA 62.373 66.667 7.64 0.00 0.00 4.69
1890 1939 3.142951 CGACGAACTAGAGGAGGATGAT 58.857 50.000 0.00 0.00 0.00 2.45
2011 2060 0.976641 ATTCCACTCAAGTCCTGCGA 59.023 50.000 0.00 0.00 0.00 5.10
2028 2077 1.199327 TCGAGCTTGAAGTCGTCGATT 59.801 47.619 0.00 0.00 34.86 3.34
2196 2257 1.205064 CTTCTTGCTGTCGGCGTTG 59.795 57.895 6.85 0.00 45.43 4.10
2214 2275 0.391793 CCTCCGCCTCTTTGTCTTCC 60.392 60.000 0.00 0.00 0.00 3.46
2223 2284 3.024356 TCCTCCTCCTCCGCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
2226 2287 2.520741 CTCTCCTCCTCCTCCGCC 60.521 72.222 0.00 0.00 0.00 6.13
2227 2288 3.223589 GCTCTCCTCCTCCTCCGC 61.224 72.222 0.00 0.00 0.00 5.54
2228 2289 2.904866 CGCTCTCCTCCTCCTCCG 60.905 72.222 0.00 0.00 0.00 4.63
2229 2290 3.223589 GCGCTCTCCTCCTCCTCC 61.224 72.222 0.00 0.00 0.00 4.30
2230 2291 2.055042 TTGCGCTCTCCTCCTCCTC 61.055 63.158 9.73 0.00 0.00 3.71
2231 2292 2.038007 TTGCGCTCTCCTCCTCCT 59.962 61.111 9.73 0.00 0.00 3.69
2232 2293 2.185608 GTTGCGCTCTCCTCCTCC 59.814 66.667 9.73 0.00 0.00 4.30
2233 2294 2.202676 CGTTGCGCTCTCCTCCTC 60.203 66.667 9.73 0.00 0.00 3.71
2378 2448 1.475403 CTTGTCGGCCTCCTCTTCTA 58.525 55.000 0.00 0.00 0.00 2.10
2379 2449 1.893919 GCTTGTCGGCCTCCTCTTCT 61.894 60.000 0.00 0.00 0.00 2.85
2490 2560 1.305623 CTTGCCATTGCCCTCTCCT 59.694 57.895 0.00 0.00 36.33 3.69
2498 2568 0.099436 GGTCGATGACTTGCCATTGC 59.901 55.000 0.00 0.00 33.44 3.56
2512 2582 3.062466 CACCTGAGGAGCGGTCGA 61.062 66.667 4.99 0.00 0.00 4.20
2515 2585 1.608717 GATGACACCTGAGGAGCGGT 61.609 60.000 4.99 0.00 0.00 5.68
2790 2860 2.922503 TTCTCGCACAGGGCCTCA 60.923 61.111 0.95 0.00 40.31 3.86
2847 2917 2.510238 GCGATCTGCTCTGCGGTT 60.510 61.111 0.00 0.00 41.73 4.44
2850 2920 2.202851 AAGGCGATCTGCTCTGCG 60.203 61.111 8.94 0.00 45.43 5.18
2986 3056 1.680522 CCGGTGGTGATCCTCTCCTG 61.681 65.000 0.00 0.00 31.62 3.86
2998 3068 2.351276 GTTCCAGATGCCGGTGGT 59.649 61.111 1.90 0.00 35.14 4.16
3036 3106 2.496817 GGCAGAATCTCGTCCGCT 59.503 61.111 0.00 0.00 0.00 5.52
3038 3108 1.140407 GAACGGCAGAATCTCGTCCG 61.140 60.000 11.80 11.80 40.25 4.79
3048 3118 3.989787 TGCAGCGAGAACGGCAGA 61.990 61.111 0.00 0.00 40.15 4.26
3066 3136 3.671971 CGATGGCCATAGTCTCGATCTTC 60.672 52.174 20.84 0.46 0.00 2.87
3072 3142 0.242286 CCTCGATGGCCATAGTCTCG 59.758 60.000 20.84 18.95 0.00 4.04
3228 3298 3.695606 AGCATGGTCACCGCGTCT 61.696 61.111 4.92 0.00 0.00 4.18
3372 3442 4.522689 ATGCCGCCGACGTGCATA 62.523 61.111 15.81 0.00 46.91 3.14
3526 3596 2.276116 ACAGCACGTCAGTCCCGAT 61.276 57.895 0.00 0.00 0.00 4.18
3543 3613 1.517257 CCTCGACGACATGCTCCAC 60.517 63.158 0.00 0.00 0.00 4.02
3624 3694 1.376037 GCTCACCGGCAGCTAGTTT 60.376 57.895 17.02 0.00 33.75 2.66
3625 3695 2.266055 GCTCACCGGCAGCTAGTT 59.734 61.111 17.02 0.00 33.75 2.24
3626 3696 2.681778 AGCTCACCGGCAGCTAGT 60.682 61.111 23.80 3.82 45.76 2.57
3678 3749 4.608948 AAGTAGTTCTGAGGTGTGGAAG 57.391 45.455 0.00 0.00 0.00 3.46
3694 3765 7.819900 AGTTAAGTGCAGGAATTCAGTAAGTAG 59.180 37.037 7.93 0.00 0.00 2.57
3697 3768 7.041098 ACAAGTTAAGTGCAGGAATTCAGTAAG 60.041 37.037 7.93 0.00 0.00 2.34
3759 3916 5.954296 ATTCTCATCAACACAGGAACAAG 57.046 39.130 0.00 0.00 0.00 3.16
3839 3996 9.219603 CAACACTTTGGATACTCTCATTTCTTA 57.780 33.333 0.00 0.00 37.61 2.10
3865 4022 7.442364 TCATTTACACTATATTCAGGAGCAAGC 59.558 37.037 0.00 0.00 0.00 4.01
3869 4026 8.552034 GTTGTCATTTACACTATATTCAGGAGC 58.448 37.037 0.00 0.00 38.00 4.70
3982 4141 8.624776 GGCTATAGATCCATTGTAAATAATGCC 58.375 37.037 3.21 0.00 36.86 4.40
3983 4142 8.338259 CGGCTATAGATCCATTGTAAATAATGC 58.662 37.037 3.21 0.00 36.86 3.56
4012 4171 2.284263 TTTTGTCGTGCATGCAAACA 57.716 40.000 24.58 25.09 32.68 2.83
4051 4210 9.582431 CTTTGTAGTATCTCCATTTCGAAGTTA 57.418 33.333 0.00 0.00 0.00 2.24
4104 4263 1.975660 TTGGCACCTTGGTTACAGAC 58.024 50.000 0.00 0.00 0.00 3.51
4105 4264 2.303175 GTTTGGCACCTTGGTTACAGA 58.697 47.619 0.00 0.00 0.00 3.41
4106 4265 1.001815 CGTTTGGCACCTTGGTTACAG 60.002 52.381 0.00 0.00 0.00 2.74
4107 4266 1.025812 CGTTTGGCACCTTGGTTACA 58.974 50.000 0.00 0.00 0.00 2.41
4108 4267 0.312729 CCGTTTGGCACCTTGGTTAC 59.687 55.000 0.00 0.00 0.00 2.50
4109 4268 0.824182 CCCGTTTGGCACCTTGGTTA 60.824 55.000 0.00 0.00 0.00 2.85
4110 4269 2.131067 CCCGTTTGGCACCTTGGTT 61.131 57.895 0.00 0.00 0.00 3.67
4111 4270 2.520741 CCCGTTTGGCACCTTGGT 60.521 61.111 0.00 0.00 0.00 3.67
4112 4271 2.520741 ACCCGTTTGGCACCTTGG 60.521 61.111 0.00 0.00 37.83 3.61
4113 4272 2.727544 CACCCGTTTGGCACCTTG 59.272 61.111 0.00 0.00 37.83 3.61
4114 4273 3.223589 GCACCCGTTTGGCACCTT 61.224 61.111 0.00 0.00 37.83 3.50
4125 4284 0.321564 TCCATGAACTTCAGCACCCG 60.322 55.000 0.00 0.00 0.00 5.28
4234 4393 5.478407 TGAGTTCTTGCTGATTATGACGAA 58.522 37.500 0.00 0.00 0.00 3.85
4242 4401 4.514441 CACAGTTCTGAGTTCTTGCTGATT 59.486 41.667 6.83 0.00 0.00 2.57
4456 4615 5.360144 TGTTGGTAGCTCTTATCTACAGACC 59.640 44.000 0.00 0.00 38.45 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.