AutoCloner

Multiple sequence alignment - TraesCS5A01G354700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G354700	chr5A	100.000	2615	0	0	1	2615	557091728	557094342	0.000000e+00	4830.0
1	TraesCS5A01G354700	chr5A	97.948	877	13	5	1	875	556736293	556735420	0.000000e+00	1515.0
2	TraesCS5A01G354700	chr5A	94.737	817	41	2	1800	2615	677830889	677831704	0.000000e+00	1269.0
3	TraesCS5A01G354700	chr5A	86.179	615	67	12	955	1559	557076740	557077346	0.000000e+00	649.0
4	TraesCS5A01G354700	chr5A	84.896	576	64	14	1000	1565	557081795	557082357	6.320000e-156	560.0
5	TraesCS5A01G354700	chr5A	84.861	502	52	10	982	1467	557098890	557099383	3.910000e-133	484.0
6	TraesCS5A01G354700	chr6A	95.455	814	37	0	1802	2615	591796210	591795397	0.000000e+00	1299.0
7	TraesCS5A01G354700	chr6A	93.796	822	50	1	1795	2615	602968828	602968007	0.000000e+00	1234.0
8	TraesCS5A01G354700	chr4A	94.608	816	44	0	1800	2615	225304702	225305517	0.000000e+00	1264.0
9	TraesCS5A01G354700	chr7A	94.465	813	45	0	1799	2611	510160839	510161651	0.000000e+00	1253.0
10	TraesCS5A01G354700	chr7A	93.260	816	54	1	1800	2615	230612142	230611328	0.000000e+00	1201.0
11	TraesCS5A01G354700	chr7A	96.639	238	7	1	479	715	110549215	110548978	6.780000e-106	394.0
12	TraesCS5A01G354700	chr1A	94.575	811	43	1	1802	2611	585986646	585985836	0.000000e+00	1253.0
13	TraesCS5A01G354700	chr1A	88.652	423	42	6	118	536	179526082	179526502	6.460000e-141	510.0
14	TraesCS5A01G354700	chr1A	92.748	262	15	3	577	837	108688624	108688882	2.460000e-100	375.0
15	TraesCS5A01G354700	chr3A	93.481	813	53	0	1799	2611	212539956	212540768	0.000000e+00	1208.0
16	TraesCS5A01G354700	chr3A	92.918	819	57	1	1797	2615	419545255	419546072	0.000000e+00	1190.0
17	TraesCS5A01G354700	chr3A	89.443	521	35	8	118	618	13083646	13084166	7.890000e-180	640.0
18	TraesCS5A01G354700	chr3A	89.474	266	20	4	617	881	13084327	13084585	1.940000e-86	329.0
19	TraesCS5A01G354700	chr5D	90.686	773	49	15	871	1636	440961475	440962231	0.000000e+00	1007.0
20	TraesCS5A01G354700	chr5D	84.765	617	65	17	965	1565	440947857	440948460	2.240000e-165	592.0
21	TraesCS5A01G354700	chr5D	84.966	592	66	14	987	1559	440938505	440939092	1.740000e-161	579.0
22	TraesCS5A01G354700	chr5D	86.706	504	43	10	982	1469	440965611	440966106	2.960000e-149	538.0
23	TraesCS5A01G354700	chr5D	88.525	122	12	2	1682	1802	440962226	440962346	2.100000e-31	147.0
24	TraesCS5A01G354700	chrUn	90.352	767	56	8	118	871	359826512	359827273	0.000000e+00	990.0
25	TraesCS5A01G354700	chrUn	91.333	450	36	3	118	565	376512931	376512483	1.720000e-171	612.0
26	TraesCS5A01G354700	chrUn	100.000	29	0	0	1660	1688	74696077	74696105	1.000000e-03	54.7
27	TraesCS5A01G354700	chrUn	100.000	29	0	0	1660	1688	253069013	253069041	1.000000e-03	54.7
28	TraesCS5A01G354700	chr5B	90.352	767	56	8	118	871	442752512	442753273	0.000000e+00	990.0
29	TraesCS5A01G354700	chr5B	91.534	626	41	2	903	1516	536505417	536506042	0.000000e+00	852.0
30	TraesCS5A01G354700	chr5B	83.680	625	68	16	965	1559	536384271	536384891	2.270000e-155	558.0
31	TraesCS5A01G354700	chr5B	84.828	580	60	18	1000	1565	536476322	536476887	2.270000e-155	558.0
32	TraesCS5A01G354700	chr5B	87.302	504	40	10	982	1469	536508534	536509029	2.940000e-154	555.0
33	TraesCS5A01G354700	chr5B	84.150	347	40	11	965	1300	536425732	536426074	3.250000e-84	322.0
34	TraesCS5A01G354700	chr5B	90.741	216	18	2	1353	1567	536426063	536426277	1.180000e-73	287.0
35	TraesCS5A01G354700	chr5B	96.639	119	3	1	1	119	536505293	536505410	2.050000e-46	196.0
36	TraesCS5A01G354700	chr5B	95.868	121	5	0	1682	1802	536506120	536506240	2.050000e-46	196.0
37	TraesCS5A01G354700	chr5B	87.640	89	3	5	1549	1636	536506044	536506125	2.140000e-16	97.1
38	TraesCS5A01G354700	chr5B	97.500	40	1	0	1645	1684	677382114	677382075	4.670000e-08	69.4
39	TraesCS5A01G354700	chr3D	89.276	774	62	9	118	875	415132546	415131778	0.000000e+00	950.0
40	TraesCS5A01G354700	chr3B	89.144	783	57	14	118	886	703333726	703334494	0.000000e+00	950.0
41	TraesCS5A01G354700	chr2D	89.003	782	58	13	105	867	485087800	485088572	0.000000e+00	942.0
42	TraesCS5A01G354700	chr1B	86.902	794	58	12	119	869	674379844	674380634	0.000000e+00	848.0
43	TraesCS5A01G354700	chr4B	87.943	423	43	7	118	536	299748634	299748216	2.340000e-135	492.0
44	TraesCS5A01G354700	chr4D	97.619	42	1	0	1643	1684	471963073	471963114	3.610000e-09	73.1
45	TraesCS5A01G354700	chr2A	88.889	54	6	0	1631	1684	14712918	14712971	1.680000e-07	67.6
46	TraesCS5A01G354700	chr7D	95.122	41	2	0	1643	1683	495877982	495878022	6.040000e-07	65.8
47	TraesCS5A01G354700	chr7B	92.857	42	3	0	1643	1684	293124612	293124571	7.810000e-06	62.1
48	TraesCS5A01G354700	chr6B	100.000	29	0	0	1660	1688	716121385	716121413	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G354700	chr5A	557091728	557094342	2614	False	4830.00	4830	100.0000	1	2615	1	chr5A.!!$F3	2614
1	TraesCS5A01G354700	chr5A	556735420	556736293	873	True	1515.00	1515	97.9480	1	875	1	chr5A.!!$R1	874
2	TraesCS5A01G354700	chr5A	677830889	677831704	815	False	1269.00	1269	94.7370	1800	2615	1	chr5A.!!$F5	815
3	TraesCS5A01G354700	chr5A	557076740	557077346	606	False	649.00	649	86.1790	955	1559	1	chr5A.!!$F1	604
4	TraesCS5A01G354700	chr5A	557081795	557082357	562	False	560.00	560	84.8960	1000	1565	1	chr5A.!!$F2	565
5	TraesCS5A01G354700	chr6A	591795397	591796210	813	True	1299.00	1299	95.4550	1802	2615	1	chr6A.!!$R1	813
6	TraesCS5A01G354700	chr6A	602968007	602968828	821	True	1234.00	1234	93.7960	1795	2615	1	chr6A.!!$R2	820
7	TraesCS5A01G354700	chr4A	225304702	225305517	815	False	1264.00	1264	94.6080	1800	2615	1	chr4A.!!$F1	815
8	TraesCS5A01G354700	chr7A	510160839	510161651	812	False	1253.00	1253	94.4650	1799	2611	1	chr7A.!!$F1	812
9	TraesCS5A01G354700	chr7A	230611328	230612142	814	True	1201.00	1201	93.2600	1800	2615	1	chr7A.!!$R2	815
10	TraesCS5A01G354700	chr1A	585985836	585986646	810	True	1253.00	1253	94.5750	1802	2611	1	chr1A.!!$R1	809
11	TraesCS5A01G354700	chr3A	212539956	212540768	812	False	1208.00	1208	93.4810	1799	2611	1	chr3A.!!$F1	812
12	TraesCS5A01G354700	chr3A	419545255	419546072	817	False	1190.00	1190	92.9180	1797	2615	1	chr3A.!!$F2	818
13	TraesCS5A01G354700	chr3A	13083646	13084585	939	False	484.50	640	89.4585	118	881	2	chr3A.!!$F3	763
14	TraesCS5A01G354700	chr5D	440947857	440948460	603	False	592.00	592	84.7650	965	1565	1	chr5D.!!$F2	600
15	TraesCS5A01G354700	chr5D	440938505	440939092	587	False	579.00	579	84.9660	987	1559	1	chr5D.!!$F1	572
16	TraesCS5A01G354700	chr5D	440961475	440966106	4631	False	564.00	1007	88.6390	871	1802	3	chr5D.!!$F3	931
17	TraesCS5A01G354700	chrUn	359826512	359827273	761	False	990.00	990	90.3520	118	871	1	chrUn.!!$F3	753
18	TraesCS5A01G354700	chr5B	442752512	442753273	761	False	990.00	990	90.3520	118	871	1	chr5B.!!$F1	753
19	TraesCS5A01G354700	chr5B	536384271	536384891	620	False	558.00	558	83.6800	965	1559	1	chr5B.!!$F2	594
20	TraesCS5A01G354700	chr5B	536476322	536476887	565	False	558.00	558	84.8280	1000	1565	1	chr5B.!!$F3	565
21	TraesCS5A01G354700	chr5B	536505293	536509029	3736	False	379.22	852	91.7966	1	1802	5	chr5B.!!$F5	1801
22	TraesCS5A01G354700	chr5B	536425732	536426277	545	False	304.50	322	87.4455	965	1567	2	chr5B.!!$F4	602
23	TraesCS5A01G354700	chr3D	415131778	415132546	768	True	950.00	950	89.2760	118	875	1	chr3D.!!$R1	757
24	TraesCS5A01G354700	chr3B	703333726	703334494	768	False	950.00	950	89.1440	118	886	1	chr3B.!!$F1	768
25	TraesCS5A01G354700	chr2D	485087800	485088572	772	False	942.00	942	89.0030	105	867	1	chr2D.!!$F1	762
26	TraesCS5A01G354700	chr1B	674379844	674380634	790	False	848.00	848	86.9020	119	869	1	chr1B.!!$F1	750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
900	1128	0.040204	CCTCCTTTGCAATCCCCACT	59.96	55.0	0.0	0.0	0.0	4.0	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2389	3832	1.371337	CTCCGGTGGACACGACGATA	61.371	60.0	0.0	0.0	0.0	2.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	3.055144	CTCACGCTTAGCATGAGCA	57.945	52.632	17.19	0.00	41.70	4.26
96	97	6.724893	TGACCGATCTAATCCTGACATTAA	57.275	37.500	0.00	0.00	0.00	1.40
283	317	8.391075	TGGTATTTTTGTGGTTTTTGAAACAA	57.609	26.923	5.97	0.00	0.00	2.83
359	403	2.429571	GCGTTGCCGTCTACGTCA	60.430	61.111	2.10	0.00	42.03	4.35
384	428	0.251209	AGGATACCAGCCGCGATCTA	60.251	55.000	8.23	0.00	37.17	1.98
685	912	2.760374	GCAGCCGCTAATTACTCTCAT	58.240	47.619	0.00	0.00	34.30	2.90
722	949	5.507315	CCACGCTAAAACTCTTGGTCAAAAT	60.507	40.000	0.00	0.00	0.00	1.82
837	1065	9.178758	GAGAATACTCTGGTTTTCAATTACCAT	57.821	33.333	0.00	0.00	43.15	3.55
887	1115	1.081343	AGCCCTAACTCTTCCCTCCTT	59.919	52.381	0.00	0.00	0.00	3.36
888	1116	1.916874	GCCCTAACTCTTCCCTCCTTT	59.083	52.381	0.00	0.00	0.00	3.11
900	1128	0.040204	CCTCCTTTGCAATCCCCACT	59.960	55.000	0.00	0.00	0.00	4.00
901	1129	1.180029	CTCCTTTGCAATCCCCACTG	58.820	55.000	0.00	0.00	0.00	3.66
968	1196	1.668337	CCACAGTGCTCTCAAGTCTCG	60.668	57.143	0.00	0.00	0.00	4.04
1132	1383	3.777925	CGGCGGTGCTCTGTTTCG	61.778	66.667	0.00	0.00	0.00	3.46
1228	1482	2.990967	CGGGTGCAATGGCCAAGT	60.991	61.111	10.96	0.00	40.13	3.16
1633	1920	5.349824	CTGACCTTTCTTTTGTCAGCTAC	57.650	43.478	6.01	0.00	46.50	3.58
1634	1921	5.036117	TGACCTTTCTTTTGTCAGCTACT	57.964	39.130	0.00	0.00	34.28	2.57
1635	1922	5.057149	TGACCTTTCTTTTGTCAGCTACTC	58.943	41.667	0.00	0.00	34.28	2.59
1636	1923	4.390264	ACCTTTCTTTTGTCAGCTACTCC	58.610	43.478	0.00	0.00	0.00	3.85
1637	1924	3.753797	CCTTTCTTTTGTCAGCTACTCCC	59.246	47.826	0.00	0.00	0.00	4.30
1638	1925	4.505742	CCTTTCTTTTGTCAGCTACTCCCT	60.506	45.833	0.00	0.00	0.00	4.20
1639	1926	3.963428	TCTTTTGTCAGCTACTCCCTC	57.037	47.619	0.00	0.00	0.00	4.30
1640	1927	2.567615	TCTTTTGTCAGCTACTCCCTCC	59.432	50.000	0.00	0.00	0.00	4.30
1641	1928	0.895530	TTTGTCAGCTACTCCCTCCG	59.104	55.000	0.00	0.00	0.00	4.63
1642	1929	0.251653	TTGTCAGCTACTCCCTCCGT	60.252	55.000	0.00	0.00	0.00	4.69
1643	1930	0.622136	TGTCAGCTACTCCCTCCGTA	59.378	55.000	0.00	0.00	0.00	4.02
1644	1931	1.310904	GTCAGCTACTCCCTCCGTAG	58.689	60.000	0.00	0.00	37.88	3.51
1645	1932	0.917533	TCAGCTACTCCCTCCGTAGT	59.082	55.000	0.00	0.00	37.31	2.73
1646	1933	1.025812	CAGCTACTCCCTCCGTAGTG	58.974	60.000	0.00	0.00	37.31	2.74
1647	1934	0.624785	AGCTACTCCCTCCGTAGTGT	59.375	55.000	0.00	0.00	37.31	3.55
1648	1935	1.023502	GCTACTCCCTCCGTAGTGTC	58.976	60.000	0.00	0.00	37.31	3.67
1649	1936	1.681166	GCTACTCCCTCCGTAGTGTCA	60.681	57.143	0.00	0.00	37.31	3.58
1650	1937	2.719739	CTACTCCCTCCGTAGTGTCAA	58.280	52.381	0.00	0.00	31.84	3.18
1651	1938	2.005370	ACTCCCTCCGTAGTGTCAAA	57.995	50.000	0.00	0.00	0.00	2.69
1652	1939	2.322658	ACTCCCTCCGTAGTGTCAAAA	58.677	47.619	0.00	0.00	0.00	2.44
1653	1940	2.701951	ACTCCCTCCGTAGTGTCAAAAA	59.298	45.455	0.00	0.00	0.00	1.94
1654	1941	3.064931	CTCCCTCCGTAGTGTCAAAAAC	58.935	50.000	0.00	0.00	0.00	2.43
1655	1942	1.796459	CCCTCCGTAGTGTCAAAAACG	59.204	52.381	0.00	0.00	35.20	3.60
1656	1943	2.476821	CCTCCGTAGTGTCAAAAACGT	58.523	47.619	0.00	0.00	33.63	3.99
1657	1944	2.867975	CCTCCGTAGTGTCAAAAACGTT	59.132	45.455	0.00	0.00	33.63	3.99
1658	1945	3.310501	CCTCCGTAGTGTCAAAAACGTTT	59.689	43.478	7.96	7.96	33.63	3.60
1659	1946	4.201841	CCTCCGTAGTGTCAAAAACGTTTT	60.202	41.667	20.26	20.26	33.63	2.43
1660	1947	5.294050	TCCGTAGTGTCAAAAACGTTTTT	57.706	34.783	28.62	28.62	40.75	1.94
1661	1948	6.414408	TCCGTAGTGTCAAAAACGTTTTTA	57.586	33.333	32.12	18.43	38.23	1.52
1662	1949	7.014092	TCCGTAGTGTCAAAAACGTTTTTAT	57.986	32.000	32.12	19.76	38.23	1.40
1663	1950	8.136057	TCCGTAGTGTCAAAAACGTTTTTATA	57.864	30.769	32.12	22.38	38.23	0.98
1664	1951	8.772705	TCCGTAGTGTCAAAAACGTTTTTATAT	58.227	29.630	32.12	20.32	38.23	0.86
1665	1952	9.384682	CCGTAGTGTCAAAAACGTTTTTATATT	57.615	29.630	32.12	20.96	38.23	1.28
1678	1965	9.471084	AACGTTTTTATATTTTGAAACAGAGGG	57.529	29.630	0.00	0.00	32.91	4.30
1679	1966	8.852135	ACGTTTTTATATTTTGAAACAGAGGGA	58.148	29.630	0.00	0.00	32.91	4.20
1680	1967	9.341899	CGTTTTTATATTTTGAAACAGAGGGAG	57.658	33.333	0.00	0.00	32.91	4.30
1781	2068	7.094805	GGTGCATCACTTAGTTAATTTCTGTCA	60.095	37.037	0.00	0.00	34.40	3.58
1949	2364	2.685829	ATTTTCATGACCGCGCGCA	61.686	52.632	32.61	19.15	0.00	6.09
2028	2491	0.597568	CGCTGGTTTTGATGCTCCAA	59.402	50.000	0.00	0.00	0.00	3.53
2096	2592	2.008242	AGAAGGCGCTCTCTCCATAT	57.992	50.000	7.64	0.00	0.00	1.78
2389	3832	4.355925	GGCTTTTCACCGACGAGT	57.644	55.556	0.00	0.00	0.00	4.18
2519	6098	3.058293	CGCCAGTTCTACAAGCAATTGAA	60.058	43.478	10.34	0.00	0.00	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	8.419442	TCATGCTAAGATATGATTCATAGCGAT	58.581	33.333	14.44	10.88	42.81	4.58
96	97	1.470805	GGTGTTTGAGCTGCGGTTTTT	60.471	47.619	0.00	0.00	0.00	1.94
200	210	4.734398	TTTTTCTGATGCCAAACACAGT	57.266	36.364	0.00	0.00	32.52	3.55
359	403	1.000955	CGCGGCTGGTATCCTTATCTT	59.999	52.381	0.00	0.00	0.00	2.40
685	912	6.150976	AGTTTTAGCGTGGATGATTGATTGAA	59.849	34.615	0.00	0.00	0.00	2.69
722	949	8.771766	GTTTGGTTGGTGTTGTTTTACTAAAAA	58.228	29.630	0.00	0.00	32.15	1.94
837	1065	6.810911	TGGCAGCAAAGTATTTTTGAAACTA	58.189	32.000	3.97	0.00	35.03	2.24
901	1129	4.318021	CGCCAGTGTGCTGTGTGC	62.318	66.667	2.74	0.00	41.02	4.57
908	1136	1.574702	GGTTTAGGTCGCCAGTGTGC	61.575	60.000	0.00	0.00	0.00	4.57
912	1140	2.660802	CCGGTTTAGGTCGCCAGT	59.339	61.111	0.00	0.00	0.00	4.00
968	1196	0.970937	TCGGTGGGACAGGATGAGAC	60.971	60.000	0.00	0.00	41.80	3.36
1090	1341	1.873270	ATGAGCAGCGTGTCCGTGTA	61.873	55.000	0.00	0.00	36.15	2.90
1228	1482	4.776322	CATCCCCTTGCACGGCGA	62.776	66.667	16.62	0.54	0.00	5.54
1379	1660	2.045926	GGAAGCCATGTCCGCAGT	60.046	61.111	0.00	0.00	0.00	4.40
1593	1880	3.991536	GAGGTGGAAGCGCCTCGTC	62.992	68.421	2.29	0.00	41.40	4.20
1594	1881	4.070552	GAGGTGGAAGCGCCTCGT	62.071	66.667	2.29	0.00	41.40	4.18
1597	1884	2.604686	TCAGAGGTGGAAGCGCCT	60.605	61.111	2.29	0.00	40.95	5.52
1603	1890	4.207165	CAAAAGAAAGGTCAGAGGTGGAA	58.793	43.478	0.00	0.00	0.00	3.53
1632	1919	2.005370	TTTGACACTACGGAGGGAGT	57.995	50.000	2.30	0.00	0.00	3.85
1633	1920	3.064931	GTTTTTGACACTACGGAGGGAG	58.935	50.000	2.30	0.00	0.00	4.30
1634	1921	2.546373	CGTTTTTGACACTACGGAGGGA	60.546	50.000	2.30	0.00	0.00	4.20
1635	1922	1.796459	CGTTTTTGACACTACGGAGGG	59.204	52.381	0.00	0.00	0.00	4.30
1636	1923	2.476821	ACGTTTTTGACACTACGGAGG	58.523	47.619	0.00	0.00	38.26	4.30
1637	1924	4.525411	AAACGTTTTTGACACTACGGAG	57.475	40.909	7.96	0.00	38.26	4.63
1638	1925	4.943142	AAAACGTTTTTGACACTACGGA	57.057	36.364	20.26	0.00	38.26	4.69
1639	1926	8.938047	ATATAAAAACGTTTTTGACACTACGG	57.062	30.769	36.92	0.00	40.33	4.02
1652	1939	9.471084	CCCTCTGTTTCAAAATATAAAAACGTT	57.529	29.630	0.00	0.00	35.00	3.99
1653	1940	8.852135	TCCCTCTGTTTCAAAATATAAAAACGT	58.148	29.630	0.00	0.00	35.00	3.99
1654	1941	9.341899	CTCCCTCTGTTTCAAAATATAAAAACG	57.658	33.333	0.00	0.00	35.00	3.60
1658	1945	9.174166	GCTACTCCCTCTGTTTCAAAATATAAA	57.826	33.333	0.00	0.00	0.00	1.40
1659	1946	8.548877	AGCTACTCCCTCTGTTTCAAAATATAA	58.451	33.333	0.00	0.00	0.00	0.98
1660	1947	8.090788	AGCTACTCCCTCTGTTTCAAAATATA	57.909	34.615	0.00	0.00	0.00	0.86
1661	1948	6.963322	AGCTACTCCCTCTGTTTCAAAATAT	58.037	36.000	0.00	0.00	0.00	1.28
1662	1949	6.213600	AGAGCTACTCCCTCTGTTTCAAAATA	59.786	38.462	0.00	0.00	38.21	1.40
1663	1950	5.013599	AGAGCTACTCCCTCTGTTTCAAAAT	59.986	40.000	0.00	0.00	38.21	1.82
1664	1951	4.348168	AGAGCTACTCCCTCTGTTTCAAAA	59.652	41.667	0.00	0.00	38.21	2.44
1665	1952	3.904339	AGAGCTACTCCCTCTGTTTCAAA	59.096	43.478	0.00	0.00	38.21	2.69
1666	1953	3.511477	AGAGCTACTCCCTCTGTTTCAA	58.489	45.455	0.00	0.00	38.21	2.69
1667	1954	3.093057	GAGAGCTACTCCCTCTGTTTCA	58.907	50.000	0.00	0.00	39.66	2.69
1668	1955	3.130340	CAGAGAGCTACTCCCTCTGTTTC	59.870	52.174	17.24	0.00	45.26	2.78
1669	1956	3.096092	CAGAGAGCTACTCCCTCTGTTT	58.904	50.000	17.24	0.00	45.26	2.83
1670	1957	2.733956	CAGAGAGCTACTCCCTCTGTT	58.266	52.381	17.24	0.00	45.26	3.16
1671	1958	2.435372	CAGAGAGCTACTCCCTCTGT	57.565	55.000	17.24	0.00	45.26	3.41
1673	1960	1.134220	CGACAGAGAGCTACTCCCTCT	60.134	57.143	8.89	3.31	45.96	3.69
1674	1961	1.305201	CGACAGAGAGCTACTCCCTC	58.695	60.000	8.89	1.13	45.96	4.30
1675	1962	0.621609	ACGACAGAGAGCTACTCCCT	59.378	55.000	8.89	0.00	45.96	4.20
1676	1963	1.133407	CAACGACAGAGAGCTACTCCC	59.867	57.143	8.89	0.99	45.96	4.30
1677	1964	1.133407	CCAACGACAGAGAGCTACTCC	59.867	57.143	8.89	0.00	45.96	3.85
1678	1965	1.813786	ACCAACGACAGAGAGCTACTC	59.186	52.381	0.00	5.36	45.22	2.59
1679	1966	1.912417	ACCAACGACAGAGAGCTACT	58.088	50.000	0.00	0.00	0.00	2.57
1680	1967	2.748532	AGTACCAACGACAGAGAGCTAC	59.251	50.000	0.00	0.00	0.00	3.58
1681	1968	3.069079	AGTACCAACGACAGAGAGCTA	57.931	47.619	0.00	0.00	0.00	3.32
1692	1979	0.235665	CAGCTGCACAAGTACCAACG	59.764	55.000	0.00	0.00	0.00	4.10
1792	2079	3.616956	TGGAGTTGCTCTTACAGATGG	57.383	47.619	0.00	0.00	0.00	3.51
1926	2214	1.668628	GCGCGGTCATGAAAATGGTTT	60.669	47.619	8.83	0.00	0.00	3.27
2096	2592	2.762459	AGTGGGCGGCCGATAGAA	60.762	61.111	33.48	5.74	39.76	2.10
2298	3740	1.991339	TATCCCGACGAGGCCTCAGA	61.991	60.000	31.67	18.95	39.21	3.27
2389	3832	1.371337	CTCCGGTGGACACGACGATA	61.371	60.000	0.00	0.00	0.00	2.92
2519	6098	2.439701	TCGCGTCCCTCTCCGATT	60.440	61.111	5.77	0.00	0.00	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.