Multiple sequence alignment - TraesCS5A01G353600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G353600 chr5A 100.000 2742 0 0 1 2742 556535373 556532632 0.000000e+00 5064
1 TraesCS5A01G353600 chr5A 85.735 694 70 22 704 1376 552078817 552078132 0.000000e+00 706
2 TraesCS5A01G353600 chr5B 89.697 990 38 12 1786 2740 535714575 535713615 0.000000e+00 1205
3 TraesCS5A01G353600 chr5B 90.595 925 47 20 668 1568 535715794 535714886 0.000000e+00 1190
4 TraesCS5A01G353600 chr5B 86.003 693 65 25 705 1375 530974451 530973769 0.000000e+00 713
5 TraesCS5A01G353600 chr5B 85.673 698 71 21 699 1375 530609093 530609782 0.000000e+00 708
6 TraesCS5A01G353600 chr5D 91.818 880 42 19 654 1505 440375857 440374980 0.000000e+00 1199
7 TraesCS5A01G353600 chr5D 86.003 693 68 21 699 1374 436349175 436349855 0.000000e+00 715
8 TraesCS5A01G353600 chr5D 90.930 441 25 6 1826 2260 440374582 440374151 1.830000e-161 579
9 TraesCS5A01G353600 chr5D 84.248 419 20 9 2332 2742 440374141 440373761 1.550000e-97 366
10 TraesCS5A01G353600 chr5D 93.519 108 7 0 99 206 440380314 440380207 7.860000e-36 161
11 TraesCS5A01G353600 chr6A 88.519 540 43 15 846 1376 28666730 28666201 1.070000e-178 636
12 TraesCS5A01G353600 chr6A 87.266 534 53 14 843 1370 33547890 33548414 1.820000e-166 595
13 TraesCS5A01G353600 chr7A 92.272 427 31 2 216 640 109765594 109765168 3.020000e-169 604
14 TraesCS5A01G353600 chr7A 91.879 431 31 3 219 646 26040477 26040906 1.410000e-167 599
15 TraesCS5A01G353600 chr2A 91.860 430 33 2 219 647 4765753 4765325 1.410000e-167 599
16 TraesCS5A01G353600 chr2A 91.163 430 30 3 219 647 266870820 266870398 6.580000e-161 577
17 TraesCS5A01G353600 chr6B 87.020 547 50 18 840 1373 55436322 55436860 5.050000e-167 597
18 TraesCS5A01G353600 chr6B 86.847 555 43 20 846 1373 55651463 55650912 6.540000e-166 593
19 TraesCS5A01G353600 chr6B 86.900 542 54 16 843 1375 60928206 60928739 2.350000e-165 592
20 TraesCS5A01G353600 chr6B 86.372 543 52 16 840 1375 54877186 54876659 8.520000e-160 573
21 TraesCS5A01G353600 chrUn 86.789 545 56 13 840 1376 103527675 103527139 6.540000e-166 593
22 TraesCS5A01G353600 chr1D 91.628 430 33 3 218 646 435950801 435951228 2.350000e-165 592
23 TraesCS5A01G353600 chr3B 90.359 446 40 3 211 654 132397633 132398077 1.420000e-162 582
24 TraesCS5A01G353600 chr3B 89.977 429 42 1 219 646 55688248 55688676 1.110000e-153 553
25 TraesCS5A01G353600 chr3B 89.767 430 42 2 219 646 55696879 55697308 1.440000e-152 549
26 TraesCS5A01G353600 chr2B 89.535 430 43 2 219 646 689161791 689161362 6.680000e-151 544


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G353600 chr5A 556532632 556535373 2741 True 5064.000000 5064 100.000000 1 2742 1 chr5A.!!$R2 2741
1 TraesCS5A01G353600 chr5A 552078132 552078817 685 True 706.000000 706 85.735000 704 1376 1 chr5A.!!$R1 672
2 TraesCS5A01G353600 chr5B 535713615 535715794 2179 True 1197.500000 1205 90.146000 668 2740 2 chr5B.!!$R2 2072
3 TraesCS5A01G353600 chr5B 530973769 530974451 682 True 713.000000 713 86.003000 705 1375 1 chr5B.!!$R1 670
4 TraesCS5A01G353600 chr5B 530609093 530609782 689 False 708.000000 708 85.673000 699 1375 1 chr5B.!!$F1 676
5 TraesCS5A01G353600 chr5D 436349175 436349855 680 False 715.000000 715 86.003000 699 1374 1 chr5D.!!$F1 675
6 TraesCS5A01G353600 chr5D 440373761 440375857 2096 True 714.666667 1199 88.998667 654 2742 3 chr5D.!!$R2 2088
7 TraesCS5A01G353600 chr6A 28666201 28666730 529 True 636.000000 636 88.519000 846 1376 1 chr6A.!!$R1 530
8 TraesCS5A01G353600 chr6A 33547890 33548414 524 False 595.000000 595 87.266000 843 1370 1 chr6A.!!$F1 527
9 TraesCS5A01G353600 chr6B 55436322 55436860 538 False 597.000000 597 87.020000 840 1373 1 chr6B.!!$F1 533
10 TraesCS5A01G353600 chr6B 55650912 55651463 551 True 593.000000 593 86.847000 846 1373 1 chr6B.!!$R2 527
11 TraesCS5A01G353600 chr6B 60928206 60928739 533 False 592.000000 592 86.900000 843 1375 1 chr6B.!!$F2 532
12 TraesCS5A01G353600 chr6B 54876659 54877186 527 True 573.000000 573 86.372000 840 1375 1 chr6B.!!$R1 535
13 TraesCS5A01G353600 chrUn 103527139 103527675 536 True 593.000000 593 86.789000 840 1376 1 chrUn.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.032515 TAGGATTCCAGCCACGAGGA 60.033 55.0 1.86 0.0 36.89 3.71 F
717 718 0.039617 CATCCAAAACTTCGCGGCAA 60.040 50.0 6.13 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1881 0.034896 GGGACAAACAGCTCGAAGGA 59.965 55.0 0.0 0.0 0.00 3.36 R
2529 2865 0.252558 ATGGGTCGGGTTACTCAGGT 60.253 55.0 0.0 0.0 32.16 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.760047 GCGAAGGGAAGCCGCTGA 62.760 66.667 0.00 0.00 44.83 4.26
27 28 2.047274 CGAAGGGAAGCCGCTGAA 60.047 61.111 0.00 0.00 35.59 3.02
28 29 1.671054 CGAAGGGAAGCCGCTGAAA 60.671 57.895 0.00 0.00 35.59 2.69
29 30 1.639298 CGAAGGGAAGCCGCTGAAAG 61.639 60.000 0.00 0.00 35.59 2.62
30 31 0.321653 GAAGGGAAGCCGCTGAAAGA 60.322 55.000 0.00 0.00 34.07 2.52
31 32 0.329596 AAGGGAAGCCGCTGAAAGAT 59.670 50.000 0.00 0.00 34.07 2.40
32 33 0.329596 AGGGAAGCCGCTGAAAGATT 59.670 50.000 0.00 0.00 34.07 2.40
33 34 0.453390 GGGAAGCCGCTGAAAGATTG 59.547 55.000 0.00 0.00 34.07 2.67
34 35 0.453390 GGAAGCCGCTGAAAGATTGG 59.547 55.000 0.00 0.00 34.07 3.16
35 36 0.179153 GAAGCCGCTGAAAGATTGGC 60.179 55.000 0.00 0.00 45.12 4.52
36 37 1.598701 AAGCCGCTGAAAGATTGGCC 61.599 55.000 0.00 0.00 45.66 5.36
37 38 2.048603 GCCGCTGAAAGATTGGCCT 61.049 57.895 3.32 0.00 40.85 5.19
38 39 1.997928 GCCGCTGAAAGATTGGCCTC 61.998 60.000 3.32 0.00 40.85 4.70
39 40 0.393537 CCGCTGAAAGATTGGCCTCT 60.394 55.000 3.32 0.00 34.07 3.69
40 41 1.012841 CGCTGAAAGATTGGCCTCTC 58.987 55.000 3.32 0.00 34.07 3.20
41 42 1.387539 GCTGAAAGATTGGCCTCTCC 58.612 55.000 3.32 0.00 34.07 3.71
42 43 1.064832 GCTGAAAGATTGGCCTCTCCT 60.065 52.381 3.32 0.00 34.07 3.69
43 44 2.641305 CTGAAAGATTGGCCTCTCCTG 58.359 52.381 3.32 0.00 34.07 3.86
44 45 2.238144 CTGAAAGATTGGCCTCTCCTGA 59.762 50.000 3.32 0.00 34.07 3.86
45 46 2.026822 TGAAAGATTGGCCTCTCCTGAC 60.027 50.000 3.32 0.00 35.26 3.51
46 47 0.539051 AAGATTGGCCTCTCCTGACG 59.461 55.000 3.32 0.00 35.26 4.35
47 48 1.144936 GATTGGCCTCTCCTGACGG 59.855 63.158 3.32 0.00 35.26 4.79
48 49 1.613630 ATTGGCCTCTCCTGACGGT 60.614 57.895 3.32 0.00 35.26 4.83
49 50 1.903877 ATTGGCCTCTCCTGACGGTG 61.904 60.000 3.32 0.00 35.26 4.94
50 51 3.775654 GGCCTCTCCTGACGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
51 52 4.459089 GCCTCTCCTGACGGTGGC 62.459 72.222 0.00 0.00 36.06 5.01
52 53 2.681778 CCTCTCCTGACGGTGGCT 60.682 66.667 0.00 0.00 0.00 4.75
53 54 1.379977 CCTCTCCTGACGGTGGCTA 60.380 63.158 0.00 0.00 0.00 3.93
54 55 1.388065 CCTCTCCTGACGGTGGCTAG 61.388 65.000 0.00 0.00 0.00 3.42
55 56 1.379977 TCTCCTGACGGTGGCTAGG 60.380 63.158 0.00 0.00 0.00 3.02
56 57 1.379977 CTCCTGACGGTGGCTAGGA 60.380 63.158 0.00 0.00 37.72 2.94
57 58 0.757188 CTCCTGACGGTGGCTAGGAT 60.757 60.000 0.00 0.00 38.56 3.24
58 59 0.325296 TCCTGACGGTGGCTAGGATT 60.325 55.000 0.00 0.00 34.54 3.01
59 60 0.105039 CCTGACGGTGGCTAGGATTC 59.895 60.000 0.00 0.00 31.91 2.52
60 61 0.105039 CTGACGGTGGCTAGGATTCC 59.895 60.000 0.00 0.00 0.00 3.01
61 62 0.616395 TGACGGTGGCTAGGATTCCA 60.616 55.000 5.29 0.00 0.00 3.53
62 63 0.105039 GACGGTGGCTAGGATTCCAG 59.895 60.000 5.29 1.90 32.15 3.86
63 64 1.227674 CGGTGGCTAGGATTCCAGC 60.228 63.158 14.96 14.96 44.85 4.85
67 68 4.445699 GCTAGGATTCCAGCCACG 57.554 61.111 5.29 0.00 0.00 4.94
68 69 1.823295 GCTAGGATTCCAGCCACGA 59.177 57.895 5.29 0.00 0.00 4.35
69 70 0.249657 GCTAGGATTCCAGCCACGAG 60.250 60.000 5.29 0.00 0.00 4.18
70 71 0.390860 CTAGGATTCCAGCCACGAGG 59.609 60.000 5.29 0.00 38.23 4.63
71 72 0.032515 TAGGATTCCAGCCACGAGGA 60.033 55.000 1.86 0.00 36.89 3.71
73 74 0.744771 GGATTCCAGCCACGAGGAAC 60.745 60.000 1.86 0.00 45.91 3.62
74 75 1.079127 ATTCCAGCCACGAGGAACG 60.079 57.895 1.86 0.00 45.91 3.95
75 76 1.541310 ATTCCAGCCACGAGGAACGA 61.541 55.000 1.86 0.00 45.91 3.85
76 77 2.125912 CCAGCCACGAGGAACGAG 60.126 66.667 1.86 0.00 45.77 4.18
77 78 2.636412 CCAGCCACGAGGAACGAGA 61.636 63.158 1.86 0.00 45.77 4.04
78 79 1.153939 CAGCCACGAGGAACGAGAG 60.154 63.158 1.86 0.00 45.77 3.20
79 80 2.182030 GCCACGAGGAACGAGAGG 59.818 66.667 1.86 0.00 45.77 3.69
80 81 2.341101 GCCACGAGGAACGAGAGGA 61.341 63.158 1.86 0.00 45.77 3.71
81 82 1.874345 GCCACGAGGAACGAGAGGAA 61.874 60.000 1.86 0.00 45.77 3.36
82 83 0.601558 CCACGAGGAACGAGAGGAAA 59.398 55.000 0.00 0.00 45.77 3.13
83 84 1.000506 CCACGAGGAACGAGAGGAAAA 59.999 52.381 0.00 0.00 45.77 2.29
84 85 2.547218 CCACGAGGAACGAGAGGAAAAA 60.547 50.000 0.00 0.00 45.77 1.94
85 86 2.731976 CACGAGGAACGAGAGGAAAAAG 59.268 50.000 0.00 0.00 45.77 2.27
86 87 2.288886 ACGAGGAACGAGAGGAAAAAGG 60.289 50.000 0.00 0.00 45.77 3.11
87 88 2.029290 CGAGGAACGAGAGGAAAAAGGA 60.029 50.000 0.00 0.00 45.77 3.36
88 89 3.554337 CGAGGAACGAGAGGAAAAAGGAA 60.554 47.826 0.00 0.00 45.77 3.36
89 90 3.997681 GAGGAACGAGAGGAAAAAGGAAG 59.002 47.826 0.00 0.00 0.00 3.46
90 91 2.484651 GGAACGAGAGGAAAAAGGAAGC 59.515 50.000 0.00 0.00 0.00 3.86
91 92 2.930826 ACGAGAGGAAAAAGGAAGCA 57.069 45.000 0.00 0.00 0.00 3.91
92 93 2.495084 ACGAGAGGAAAAAGGAAGCAC 58.505 47.619 0.00 0.00 0.00 4.40
93 94 2.158813 ACGAGAGGAAAAAGGAAGCACA 60.159 45.455 0.00 0.00 0.00 4.57
94 95 2.878406 CGAGAGGAAAAAGGAAGCACAA 59.122 45.455 0.00 0.00 0.00 3.33
95 96 3.315191 CGAGAGGAAAAAGGAAGCACAAA 59.685 43.478 0.00 0.00 0.00 2.83
96 97 4.022849 CGAGAGGAAAAAGGAAGCACAAAT 60.023 41.667 0.00 0.00 0.00 2.32
97 98 5.181245 CGAGAGGAAAAAGGAAGCACAAATA 59.819 40.000 0.00 0.00 0.00 1.40
98 99 6.127897 CGAGAGGAAAAAGGAAGCACAAATAT 60.128 38.462 0.00 0.00 0.00 1.28
99 100 7.544804 AGAGGAAAAAGGAAGCACAAATATT 57.455 32.000 0.00 0.00 0.00 1.28
100 101 7.381323 AGAGGAAAAAGGAAGCACAAATATTG 58.619 34.615 0.00 0.00 0.00 1.90
101 102 6.466812 AGGAAAAAGGAAGCACAAATATTGG 58.533 36.000 0.00 0.00 34.12 3.16
102 103 6.043127 AGGAAAAAGGAAGCACAAATATTGGT 59.957 34.615 0.00 0.00 34.12 3.67
103 104 6.710295 GGAAAAAGGAAGCACAAATATTGGTT 59.290 34.615 0.00 0.00 37.39 3.67
104 105 7.228507 GGAAAAAGGAAGCACAAATATTGGTTT 59.771 33.333 0.00 0.00 34.87 3.27
105 106 7.728847 AAAAGGAAGCACAAATATTGGTTTC 57.271 32.000 0.00 0.00 34.87 2.78
106 107 6.418057 AAGGAAGCACAAATATTGGTTTCA 57.582 33.333 8.86 0.00 34.87 2.69
107 108 5.783111 AGGAAGCACAAATATTGGTTTCAC 58.217 37.500 8.86 1.22 34.87 3.18
108 109 5.304101 AGGAAGCACAAATATTGGTTTCACA 59.696 36.000 8.86 0.00 34.87 3.58
109 110 5.988561 GGAAGCACAAATATTGGTTTCACAA 59.011 36.000 8.86 0.00 34.87 3.33
110 111 6.650390 GGAAGCACAAATATTGGTTTCACAAT 59.350 34.615 8.86 0.00 43.13 2.71
111 112 7.173047 GGAAGCACAAATATTGGTTTCACAATT 59.827 33.333 8.86 0.00 41.12 2.32
112 113 8.449251 AAGCACAAATATTGGTTTCACAATTT 57.551 26.923 0.00 0.00 41.12 1.82
113 114 8.449251 AGCACAAATATTGGTTTCACAATTTT 57.551 26.923 0.00 0.00 41.12 1.82
114 115 8.344098 AGCACAAATATTGGTTTCACAATTTTG 58.656 29.630 16.05 16.05 41.12 2.44
115 116 7.113264 GCACAAATATTGGTTTCACAATTTTGC 59.887 33.333 16.79 6.42 41.12 3.68
116 117 7.590689 CACAAATATTGGTTTCACAATTTTGCC 59.409 33.333 16.79 0.00 41.12 4.52
117 118 7.501892 ACAAATATTGGTTTCACAATTTTGCCT 59.498 29.630 16.79 5.84 41.12 4.75
118 119 8.997323 CAAATATTGGTTTCACAATTTTGCCTA 58.003 29.630 0.00 0.00 41.12 3.93
119 120 8.546597 AATATTGGTTTCACAATTTTGCCTAC 57.453 30.769 0.00 0.00 41.12 3.18
120 121 4.329462 TGGTTTCACAATTTTGCCTACC 57.671 40.909 0.00 0.00 0.00 3.18
121 122 3.706594 TGGTTTCACAATTTTGCCTACCA 59.293 39.130 7.68 7.68 0.00 3.25
122 123 4.202202 TGGTTTCACAATTTTGCCTACCAG 60.202 41.667 7.68 0.00 30.48 4.00
123 124 4.038642 GGTTTCACAATTTTGCCTACCAGA 59.961 41.667 0.00 0.00 0.00 3.86
124 125 4.846779 TTCACAATTTTGCCTACCAGAC 57.153 40.909 0.00 0.00 0.00 3.51
125 126 3.153919 TCACAATTTTGCCTACCAGACC 58.846 45.455 0.00 0.00 0.00 3.85
126 127 2.890311 CACAATTTTGCCTACCAGACCA 59.110 45.455 0.00 0.00 0.00 4.02
127 128 3.057315 CACAATTTTGCCTACCAGACCAG 60.057 47.826 0.00 0.00 0.00 4.00
128 129 3.181434 ACAATTTTGCCTACCAGACCAGA 60.181 43.478 0.00 0.00 0.00 3.86
129 130 2.859165 TTTTGCCTACCAGACCAGAG 57.141 50.000 0.00 0.00 0.00 3.35
130 131 1.729586 TTTGCCTACCAGACCAGAGT 58.270 50.000 0.00 0.00 0.00 3.24
131 132 1.267121 TTGCCTACCAGACCAGAGTC 58.733 55.000 0.00 0.00 43.89 3.36
160 161 2.132762 CGTACAATACGCCTTCCATCC 58.867 52.381 0.00 0.00 45.81 3.51
161 162 2.132762 GTACAATACGCCTTCCATCCG 58.867 52.381 0.00 0.00 0.00 4.18
162 163 0.814010 ACAATACGCCTTCCATCCGC 60.814 55.000 0.00 0.00 0.00 5.54
168 169 4.514577 CCTTCCATCCGCGCTCGT 62.515 66.667 5.56 0.00 0.00 4.18
169 170 2.956964 CTTCCATCCGCGCTCGTC 60.957 66.667 5.56 0.00 0.00 4.20
170 171 4.847516 TTCCATCCGCGCTCGTCG 62.848 66.667 5.56 0.00 42.12 5.12
172 173 4.246206 CCATCCGCGCTCGTCGTA 62.246 66.667 5.56 0.00 41.07 3.43
173 174 2.277692 CATCCGCGCTCGTCGTAA 60.278 61.111 5.56 0.00 41.07 3.18
174 175 2.277756 ATCCGCGCTCGTCGTAAC 60.278 61.111 5.56 0.00 41.07 2.50
175 176 3.746409 ATCCGCGCTCGTCGTAACC 62.746 63.158 5.56 0.00 41.07 2.85
176 177 4.764336 CCGCGCTCGTCGTAACCA 62.764 66.667 5.56 0.00 41.07 3.67
177 178 2.801996 CGCGCTCGTCGTAACCAA 60.802 61.111 5.56 0.00 41.07 3.67
178 179 2.774951 CGCGCTCGTCGTAACCAAG 61.775 63.158 5.56 0.00 41.07 3.61
179 180 1.731969 GCGCTCGTCGTAACCAAGT 60.732 57.895 0.00 0.00 41.07 3.16
180 181 1.280206 GCGCTCGTCGTAACCAAGTT 61.280 55.000 0.00 0.00 41.07 2.66
181 182 1.134226 CGCTCGTCGTAACCAAGTTT 58.866 50.000 0.00 0.00 0.00 2.66
182 183 2.318578 CGCTCGTCGTAACCAAGTTTA 58.681 47.619 0.00 0.00 0.00 2.01
183 184 2.089581 CGCTCGTCGTAACCAAGTTTAC 59.910 50.000 0.00 0.00 0.00 2.01
189 190 3.444618 CGTAACCAAGTTTACGCCTTC 57.555 47.619 2.78 0.00 45.54 3.46
190 191 2.801679 CGTAACCAAGTTTACGCCTTCA 59.198 45.455 2.78 0.00 45.54 3.02
191 192 3.248125 CGTAACCAAGTTTACGCCTTCAA 59.752 43.478 2.78 0.00 45.54 2.69
192 193 4.260702 CGTAACCAAGTTTACGCCTTCAAA 60.261 41.667 2.78 0.00 45.54 2.69
193 194 3.703286 ACCAAGTTTACGCCTTCAAAC 57.297 42.857 0.00 0.00 35.36 2.93
194 195 2.359848 ACCAAGTTTACGCCTTCAAACC 59.640 45.455 0.00 0.00 35.66 3.27
195 196 2.359531 CCAAGTTTACGCCTTCAAACCA 59.640 45.455 0.00 0.00 35.66 3.67
196 197 3.550030 CCAAGTTTACGCCTTCAAACCAG 60.550 47.826 0.00 0.00 35.66 4.00
197 198 2.927028 AGTTTACGCCTTCAAACCAGT 58.073 42.857 0.00 0.00 35.66 4.00
198 199 3.284617 AGTTTACGCCTTCAAACCAGTT 58.715 40.909 0.00 0.00 35.66 3.16
199 200 3.314357 AGTTTACGCCTTCAAACCAGTTC 59.686 43.478 0.00 0.00 35.66 3.01
200 201 1.886886 TACGCCTTCAAACCAGTTCC 58.113 50.000 0.00 0.00 0.00 3.62
201 202 1.164041 ACGCCTTCAAACCAGTTCCG 61.164 55.000 0.00 0.00 0.00 4.30
202 203 1.164041 CGCCTTCAAACCAGTTCCGT 61.164 55.000 0.00 0.00 0.00 4.69
203 204 0.310854 GCCTTCAAACCAGTTCCGTG 59.689 55.000 0.00 0.00 0.00 4.94
204 205 0.951558 CCTTCAAACCAGTTCCGTGG 59.048 55.000 0.00 0.00 44.01 4.94
205 206 0.310854 CTTCAAACCAGTTCCGTGGC 59.689 55.000 0.00 0.00 41.90 5.01
206 207 1.104577 TTCAAACCAGTTCCGTGGCC 61.105 55.000 0.00 0.00 41.90 5.36
207 208 1.528309 CAAACCAGTTCCGTGGCCT 60.528 57.895 3.32 0.00 41.90 5.19
208 209 1.528309 AAACCAGTTCCGTGGCCTG 60.528 57.895 3.32 0.00 41.90 4.85
209 210 4.643387 ACCAGTTCCGTGGCCTGC 62.643 66.667 3.32 0.00 41.90 4.85
210 211 4.335647 CCAGTTCCGTGGCCTGCT 62.336 66.667 3.32 0.00 0.00 4.24
211 212 2.743928 CAGTTCCGTGGCCTGCTC 60.744 66.667 3.32 0.00 0.00 4.26
212 213 3.241530 AGTTCCGTGGCCTGCTCA 61.242 61.111 3.32 0.00 0.00 4.26
213 214 3.050275 GTTCCGTGGCCTGCTCAC 61.050 66.667 3.32 0.00 0.00 3.51
214 215 3.241530 TTCCGTGGCCTGCTCACT 61.242 61.111 3.32 0.00 33.31 3.41
215 216 3.240134 TTCCGTGGCCTGCTCACTC 62.240 63.158 3.32 0.00 33.31 3.51
216 217 4.007644 CCGTGGCCTGCTCACTCA 62.008 66.667 3.32 0.00 33.31 3.41
217 218 2.740055 CGTGGCCTGCTCACTCAC 60.740 66.667 3.32 0.00 33.31 3.51
218 219 2.740055 GTGGCCTGCTCACTCACG 60.740 66.667 3.32 0.00 32.78 4.35
219 220 4.007644 TGGCCTGCTCACTCACGG 62.008 66.667 3.32 0.00 0.00 4.94
220 221 4.767255 GGCCTGCTCACTCACGGG 62.767 72.222 0.00 0.00 35.26 5.28
221 222 3.695606 GCCTGCTCACTCACGGGA 61.696 66.667 0.00 0.00 33.88 5.14
222 223 3.059982 CCTGCTCACTCACGGGAA 58.940 61.111 0.00 0.00 33.88 3.97
223 224 1.374758 CCTGCTCACTCACGGGAAC 60.375 63.158 0.00 0.00 33.88 3.62
238 239 3.738830 GGGAACGTATATAGTGCACCA 57.261 47.619 14.63 0.00 0.00 4.17
239 240 4.062677 GGGAACGTATATAGTGCACCAA 57.937 45.455 14.63 1.92 0.00 3.67
240 241 4.056050 GGGAACGTATATAGTGCACCAAG 58.944 47.826 14.63 0.87 0.00 3.61
241 242 4.202182 GGGAACGTATATAGTGCACCAAGA 60.202 45.833 14.63 0.00 0.00 3.02
242 243 5.510861 GGGAACGTATATAGTGCACCAAGAT 60.511 44.000 14.63 7.68 0.00 2.40
243 244 6.294899 GGGAACGTATATAGTGCACCAAGATA 60.295 42.308 14.63 6.63 0.00 1.98
244 245 7.149973 GGAACGTATATAGTGCACCAAGATAA 58.850 38.462 14.63 0.00 0.00 1.75
245 246 7.817962 GGAACGTATATAGTGCACCAAGATAAT 59.182 37.037 14.63 0.64 0.00 1.28
246 247 9.204570 GAACGTATATAGTGCACCAAGATAATT 57.795 33.333 14.63 7.40 0.00 1.40
247 248 9.555727 AACGTATATAGTGCACCAAGATAATTT 57.444 29.630 14.63 3.66 0.00 1.82
248 249 8.988934 ACGTATATAGTGCACCAAGATAATTTG 58.011 33.333 14.63 3.67 0.00 2.32
249 250 8.988934 CGTATATAGTGCACCAAGATAATTTGT 58.011 33.333 14.63 0.00 0.00 2.83
251 252 4.178545 AGTGCACCAAGATAATTTGTGC 57.821 40.909 14.63 9.20 36.51 4.57
252 253 3.828451 AGTGCACCAAGATAATTTGTGCT 59.172 39.130 14.63 0.00 36.71 4.40
253 254 5.009631 AGTGCACCAAGATAATTTGTGCTA 58.990 37.500 14.63 2.98 36.71 3.49
254 255 5.095490 GTGCACCAAGATAATTTGTGCTAC 58.905 41.667 5.22 9.52 36.71 3.58
255 256 4.157656 TGCACCAAGATAATTTGTGCTACC 59.842 41.667 15.13 0.00 36.71 3.18
256 257 4.157656 GCACCAAGATAATTTGTGCTACCA 59.842 41.667 8.94 0.00 34.85 3.25
257 258 5.677091 GCACCAAGATAATTTGTGCTACCAG 60.677 44.000 8.94 0.00 34.85 4.00
258 259 5.415701 CACCAAGATAATTTGTGCTACCAGT 59.584 40.000 0.00 0.00 0.00 4.00
259 260 5.415701 ACCAAGATAATTTGTGCTACCAGTG 59.584 40.000 0.00 0.00 0.00 3.66
260 261 5.335127 CAAGATAATTTGTGCTACCAGTGC 58.665 41.667 0.00 0.00 0.00 4.40
261 262 4.588899 AGATAATTTGTGCTACCAGTGCA 58.411 39.130 0.00 0.00 38.19 4.57
266 267 2.920384 TGCTACCAGTGCACCGGA 60.920 61.111 25.94 6.17 35.31 5.14
267 268 2.434359 GCTACCAGTGCACCGGAC 60.434 66.667 25.94 10.53 0.00 4.79
268 269 2.264794 CTACCAGTGCACCGGACC 59.735 66.667 25.94 0.00 0.00 4.46
269 270 3.310860 CTACCAGTGCACCGGACCC 62.311 68.421 25.94 0.00 0.00 4.46
279 280 4.715523 CCGGACCCCGTTGCACAT 62.716 66.667 0.00 0.00 46.80 3.21
280 281 2.671619 CGGACCCCGTTGCACATT 60.672 61.111 0.00 0.00 42.73 2.71
281 282 2.686816 CGGACCCCGTTGCACATTC 61.687 63.158 0.00 0.00 42.73 2.67
282 283 1.602323 GGACCCCGTTGCACATTCA 60.602 57.895 0.00 0.00 0.00 2.57
283 284 1.175983 GGACCCCGTTGCACATTCAA 61.176 55.000 0.00 0.00 0.00 2.69
284 285 0.671251 GACCCCGTTGCACATTCAAA 59.329 50.000 0.00 0.00 0.00 2.69
285 286 1.067821 GACCCCGTTGCACATTCAAAA 59.932 47.619 0.00 0.00 0.00 2.44
286 287 1.482593 ACCCCGTTGCACATTCAAAAA 59.517 42.857 0.00 0.00 0.00 1.94
287 288 2.103941 ACCCCGTTGCACATTCAAAAAT 59.896 40.909 0.00 0.00 0.00 1.82
288 289 3.322254 ACCCCGTTGCACATTCAAAAATA 59.678 39.130 0.00 0.00 0.00 1.40
289 290 4.020662 ACCCCGTTGCACATTCAAAAATAT 60.021 37.500 0.00 0.00 0.00 1.28
290 291 4.934602 CCCCGTTGCACATTCAAAAATATT 59.065 37.500 0.00 0.00 0.00 1.28
291 292 5.063312 CCCCGTTGCACATTCAAAAATATTC 59.937 40.000 0.00 0.00 0.00 1.75
292 293 5.636965 CCCGTTGCACATTCAAAAATATTCA 59.363 36.000 0.00 0.00 0.00 2.57
293 294 6.146837 CCCGTTGCACATTCAAAAATATTCAA 59.853 34.615 0.00 0.00 0.00 2.69
294 295 7.307632 CCCGTTGCACATTCAAAAATATTCAAA 60.308 33.333 0.00 0.00 0.00 2.69
295 296 8.066595 CCGTTGCACATTCAAAAATATTCAAAA 58.933 29.630 0.00 0.00 0.00 2.44
296 297 9.430838 CGTTGCACATTCAAAAATATTCAAAAA 57.569 25.926 0.00 0.00 0.00 1.94
321 322 7.669438 AATTCGAAAATAATTGAGTGCATCG 57.331 32.000 0.00 0.00 0.00 3.84
322 323 6.415798 TTCGAAAATAATTGAGTGCATCGA 57.584 33.333 0.00 0.00 35.30 3.59
323 324 5.795766 TCGAAAATAATTGAGTGCATCGAC 58.204 37.500 0.00 0.00 32.55 4.20
324 325 5.350091 TCGAAAATAATTGAGTGCATCGACA 59.650 36.000 0.00 0.00 32.55 4.35
325 326 5.449113 CGAAAATAATTGAGTGCATCGACAC 59.551 40.000 0.00 0.00 41.02 3.67
326 327 5.878332 AAATAATTGAGTGCATCGACACA 57.122 34.783 8.66 0.00 43.23 3.72
327 328 5.878332 AATAATTGAGTGCATCGACACAA 57.122 34.783 8.66 0.00 43.23 3.33
328 329 3.542712 AATTGAGTGCATCGACACAAC 57.457 42.857 8.66 3.52 43.23 3.32
329 330 1.946745 TTGAGTGCATCGACACAACA 58.053 45.000 8.66 5.71 43.23 3.33
330 331 2.168326 TGAGTGCATCGACACAACAT 57.832 45.000 8.66 0.00 43.23 2.71
331 332 2.068519 TGAGTGCATCGACACAACATC 58.931 47.619 8.66 0.00 43.23 3.06
332 333 2.068519 GAGTGCATCGACACAACATCA 58.931 47.619 8.66 0.00 43.23 3.07
333 334 2.480037 GAGTGCATCGACACAACATCAA 59.520 45.455 8.66 0.00 43.23 2.57
334 335 3.076621 AGTGCATCGACACAACATCAAT 58.923 40.909 8.66 0.00 43.23 2.57
335 336 3.120095 AGTGCATCGACACAACATCAATG 60.120 43.478 8.66 0.00 43.23 2.82
336 337 2.813172 TGCATCGACACAACATCAATGT 59.187 40.909 0.00 0.00 44.20 2.71
337 338 3.999663 TGCATCGACACAACATCAATGTA 59.000 39.130 0.00 0.00 40.80 2.29
338 339 4.635324 TGCATCGACACAACATCAATGTAT 59.365 37.500 0.00 0.00 40.80 2.29
339 340 4.965762 GCATCGACACAACATCAATGTATG 59.034 41.667 0.00 1.54 40.80 2.39
340 341 5.447683 GCATCGACACAACATCAATGTATGT 60.448 40.000 10.94 10.94 40.80 2.29
378 379 9.719279 TTCAAATCAAAATTCAAAACAATGCTC 57.281 25.926 0.00 0.00 0.00 4.26
379 380 8.890718 TCAAATCAAAATTCAAAACAATGCTCA 58.109 25.926 0.00 0.00 0.00 4.26
380 381 9.504710 CAAATCAAAATTCAAAACAATGCTCAA 57.495 25.926 0.00 0.00 0.00 3.02
381 382 9.724839 AAATCAAAATTCAAAACAATGCTCAAG 57.275 25.926 0.00 0.00 0.00 3.02
382 383 8.665643 ATCAAAATTCAAAACAATGCTCAAGA 57.334 26.923 0.00 0.00 0.00 3.02
383 384 8.665643 TCAAAATTCAAAACAATGCTCAAGAT 57.334 26.923 0.00 0.00 0.00 2.40
384 385 9.761504 TCAAAATTCAAAACAATGCTCAAGATA 57.238 25.926 0.00 0.00 0.00 1.98
385 386 9.801714 CAAAATTCAAAACAATGCTCAAGATAC 57.198 29.630 0.00 0.00 0.00 2.24
386 387 9.545105 AAAATTCAAAACAATGCTCAAGATACA 57.455 25.926 0.00 0.00 0.00 2.29
387 388 9.545105 AAATTCAAAACAATGCTCAAGATACAA 57.455 25.926 0.00 0.00 0.00 2.41
388 389 9.545105 AATTCAAAACAATGCTCAAGATACAAA 57.455 25.926 0.00 0.00 0.00 2.83
389 390 8.939201 TTCAAAACAATGCTCAAGATACAAAA 57.061 26.923 0.00 0.00 0.00 2.44
390 391 8.939201 TCAAAACAATGCTCAAGATACAAAAA 57.061 26.923 0.00 0.00 0.00 1.94
391 392 9.545105 TCAAAACAATGCTCAAGATACAAAAAT 57.455 25.926 0.00 0.00 0.00 1.82
392 393 9.588774 CAAAACAATGCTCAAGATACAAAAATG 57.411 29.630 0.00 0.00 0.00 2.32
393 394 9.545105 AAAACAATGCTCAAGATACAAAAATGA 57.455 25.926 0.00 0.00 0.00 2.57
394 395 9.715121 AAACAATGCTCAAGATACAAAAATGAT 57.285 25.926 0.00 0.00 0.00 2.45
413 414 8.483307 AAATGATAAATTTGACCTCAATGTGC 57.517 30.769 0.00 0.00 35.55 4.57
414 415 6.839124 TGATAAATTTGACCTCAATGTGCT 57.161 33.333 0.00 0.00 35.55 4.40
415 416 7.936496 TGATAAATTTGACCTCAATGTGCTA 57.064 32.000 0.00 0.00 35.55 3.49
416 417 8.347004 TGATAAATTTGACCTCAATGTGCTAA 57.653 30.769 0.00 0.00 35.55 3.09
417 418 8.970020 TGATAAATTTGACCTCAATGTGCTAAT 58.030 29.630 0.00 0.00 35.55 1.73
418 419 9.241317 GATAAATTTGACCTCAATGTGCTAATG 57.759 33.333 0.00 0.00 35.55 1.90
419 420 5.587388 ATTTGACCTCAATGTGCTAATGG 57.413 39.130 0.00 0.00 35.55 3.16
420 421 3.003394 TGACCTCAATGTGCTAATGGG 57.997 47.619 0.00 0.00 0.00 4.00
421 422 1.678101 GACCTCAATGTGCTAATGGGC 59.322 52.381 0.00 0.00 0.00 5.36
422 423 1.035139 CCTCAATGTGCTAATGGGCC 58.965 55.000 0.00 0.00 0.00 5.80
423 424 1.685803 CCTCAATGTGCTAATGGGCCA 60.686 52.381 9.61 9.61 0.00 5.36
424 425 2.101783 CTCAATGTGCTAATGGGCCAA 58.898 47.619 11.89 0.00 0.00 4.52
425 426 2.496871 CTCAATGTGCTAATGGGCCAAA 59.503 45.455 11.89 0.00 0.00 3.28
426 427 2.902486 TCAATGTGCTAATGGGCCAAAA 59.098 40.909 11.89 0.00 0.00 2.44
427 428 3.002102 CAATGTGCTAATGGGCCAAAAC 58.998 45.455 11.89 5.38 0.00 2.43
428 429 2.008242 TGTGCTAATGGGCCAAAACT 57.992 45.000 11.89 0.00 0.00 2.66
429 430 1.617850 TGTGCTAATGGGCCAAAACTG 59.382 47.619 11.89 0.24 0.00 3.16
430 431 1.892474 GTGCTAATGGGCCAAAACTGA 59.108 47.619 11.89 0.00 0.00 3.41
431 432 2.298729 GTGCTAATGGGCCAAAACTGAA 59.701 45.455 11.89 0.00 0.00 3.02
432 433 2.562298 TGCTAATGGGCCAAAACTGAAG 59.438 45.455 11.89 1.50 0.00 3.02
433 434 2.675032 GCTAATGGGCCAAAACTGAAGC 60.675 50.000 11.89 8.25 0.00 3.86
434 435 0.686789 AATGGGCCAAAACTGAAGCC 59.313 50.000 11.89 0.00 44.99 4.35
436 437 3.869481 GGCCAAAACTGAAGCCCA 58.131 55.556 0.00 0.00 39.60 5.36
437 438 2.132300 GGCCAAAACTGAAGCCCAA 58.868 52.632 0.00 0.00 39.60 4.12
438 439 0.249868 GGCCAAAACTGAAGCCCAAC 60.250 55.000 0.00 0.00 39.60 3.77
439 440 0.752658 GCCAAAACTGAAGCCCAACT 59.247 50.000 0.00 0.00 0.00 3.16
440 441 1.138859 GCCAAAACTGAAGCCCAACTT 59.861 47.619 0.00 0.00 42.98 2.66
441 442 2.825205 CCAAAACTGAAGCCCAACTTG 58.175 47.619 0.00 0.00 39.29 3.16
442 443 2.168313 CCAAAACTGAAGCCCAACTTGT 59.832 45.455 0.00 0.00 39.29 3.16
443 444 3.189285 CAAAACTGAAGCCCAACTTGTG 58.811 45.455 0.00 0.00 39.29 3.33
444 445 2.143876 AACTGAAGCCCAACTTGTGT 57.856 45.000 0.00 0.00 39.29 3.72
445 446 2.143876 ACTGAAGCCCAACTTGTGTT 57.856 45.000 0.00 0.00 39.29 3.32
446 447 3.290948 ACTGAAGCCCAACTTGTGTTA 57.709 42.857 0.00 0.00 39.29 2.41
447 448 2.949644 ACTGAAGCCCAACTTGTGTTAC 59.050 45.455 0.00 0.00 39.29 2.50
448 449 1.944024 TGAAGCCCAACTTGTGTTACG 59.056 47.619 0.00 0.00 39.29 3.18
449 450 1.944709 GAAGCCCAACTTGTGTTACGT 59.055 47.619 0.00 0.00 39.29 3.57
450 451 2.914695 AGCCCAACTTGTGTTACGTA 57.085 45.000 0.00 0.00 34.60 3.57
451 452 2.486918 AGCCCAACTTGTGTTACGTAC 58.513 47.619 0.00 0.00 34.60 3.67
452 453 2.103601 AGCCCAACTTGTGTTACGTACT 59.896 45.455 0.00 0.00 34.60 2.73
453 454 3.321682 AGCCCAACTTGTGTTACGTACTA 59.678 43.478 0.00 0.00 34.60 1.82
454 455 4.020839 AGCCCAACTTGTGTTACGTACTAT 60.021 41.667 0.00 0.00 34.60 2.12
455 456 4.692155 GCCCAACTTGTGTTACGTACTATT 59.308 41.667 0.00 0.00 34.60 1.73
456 457 5.163923 GCCCAACTTGTGTTACGTACTATTC 60.164 44.000 0.00 0.00 34.60 1.75
457 458 5.349543 CCCAACTTGTGTTACGTACTATTCC 59.650 44.000 0.00 0.00 34.60 3.01
458 459 5.061311 CCAACTTGTGTTACGTACTATTCCG 59.939 44.000 0.00 0.00 34.60 4.30
459 460 5.376854 ACTTGTGTTACGTACTATTCCGT 57.623 39.130 0.00 0.00 40.87 4.69
460 461 5.156355 ACTTGTGTTACGTACTATTCCGTG 58.844 41.667 0.00 0.00 37.91 4.94
461 462 4.764679 TGTGTTACGTACTATTCCGTGT 57.235 40.909 0.00 0.00 37.91 4.49
462 463 4.722194 TGTGTTACGTACTATTCCGTGTC 58.278 43.478 0.00 0.00 37.91 3.67
463 464 4.215185 TGTGTTACGTACTATTCCGTGTCA 59.785 41.667 0.00 0.00 37.91 3.58
464 465 5.153513 GTGTTACGTACTATTCCGTGTCAA 58.846 41.667 0.00 0.00 37.91 3.18
465 466 5.629020 GTGTTACGTACTATTCCGTGTCAAA 59.371 40.000 0.00 0.00 37.91 2.69
466 467 6.308766 GTGTTACGTACTATTCCGTGTCAAAT 59.691 38.462 0.00 0.00 37.91 2.32
467 468 6.867816 TGTTACGTACTATTCCGTGTCAAATT 59.132 34.615 0.00 0.00 37.91 1.82
468 469 7.384660 TGTTACGTACTATTCCGTGTCAAATTT 59.615 33.333 0.00 0.00 37.91 1.82
469 470 6.160664 ACGTACTATTCCGTGTCAAATTTG 57.839 37.500 12.15 12.15 35.69 2.32
470 471 5.697633 ACGTACTATTCCGTGTCAAATTTGT 59.302 36.000 17.47 0.00 35.69 2.83
471 472 6.203338 ACGTACTATTCCGTGTCAAATTTGTT 59.797 34.615 17.47 0.00 35.69 2.83
472 473 7.384660 ACGTACTATTCCGTGTCAAATTTGTTA 59.615 33.333 17.47 5.66 35.69 2.41
473 474 8.385111 CGTACTATTCCGTGTCAAATTTGTTAT 58.615 33.333 17.47 5.27 0.00 1.89
476 477 9.974980 ACTATTCCGTGTCAAATTTGTTATTTT 57.025 25.926 17.47 1.39 0.00 1.82
549 550 4.859304 ATTGATGTTGTGTCAATGCACT 57.141 36.364 0.00 0.00 42.87 4.40
550 551 5.963176 ATTGATGTTGTGTCAATGCACTA 57.037 34.783 0.00 0.20 42.87 2.74
551 552 5.764487 TTGATGTTGTGTCAATGCACTAA 57.236 34.783 0.00 1.24 39.89 2.24
552 553 5.764487 TGATGTTGTGTCAATGCACTAAA 57.236 34.783 0.00 0.00 39.89 1.85
553 554 6.330004 TGATGTTGTGTCAATGCACTAAAT 57.670 33.333 0.00 3.13 39.89 1.40
554 555 6.747125 TGATGTTGTGTCAATGCACTAAATT 58.253 32.000 0.00 0.00 39.89 1.82
555 556 7.208777 TGATGTTGTGTCAATGCACTAAATTT 58.791 30.769 0.00 0.00 39.89 1.82
556 557 7.710044 TGATGTTGTGTCAATGCACTAAATTTT 59.290 29.630 0.00 0.00 39.89 1.82
557 558 7.840342 TGTTGTGTCAATGCACTAAATTTTT 57.160 28.000 0.00 0.00 39.89 1.94
599 600 4.603231 TTTTAATATGCAACGGACGACC 57.397 40.909 0.00 0.00 0.00 4.79
623 624 2.680841 TGCACCGATAGCACAAATTACC 59.319 45.455 0.00 0.00 37.02 2.85
624 625 2.032924 GCACCGATAGCACAAATTACCC 59.967 50.000 0.00 0.00 0.00 3.69
625 626 2.616842 CACCGATAGCACAAATTACCCC 59.383 50.000 0.00 0.00 0.00 4.95
626 627 1.871039 CCGATAGCACAAATTACCCCG 59.129 52.381 0.00 0.00 0.00 5.73
627 628 1.871039 CGATAGCACAAATTACCCCGG 59.129 52.381 0.00 0.00 0.00 5.73
628 629 2.743838 CGATAGCACAAATTACCCCGGT 60.744 50.000 0.00 0.00 0.00 5.28
629 630 3.493002 CGATAGCACAAATTACCCCGGTA 60.493 47.826 0.00 0.00 0.00 4.02
630 631 2.118313 AGCACAAATTACCCCGGTAC 57.882 50.000 0.00 0.00 0.00 3.34
631 632 1.351683 AGCACAAATTACCCCGGTACA 59.648 47.619 0.00 0.00 0.00 2.90
632 633 1.469703 GCACAAATTACCCCGGTACAC 59.530 52.381 0.00 0.00 0.00 2.90
633 634 2.086094 CACAAATTACCCCGGTACACC 58.914 52.381 0.00 0.00 0.00 4.16
634 635 1.704070 ACAAATTACCCCGGTACACCA 59.296 47.619 0.00 0.00 35.14 4.17
635 636 2.290450 ACAAATTACCCCGGTACACCAG 60.290 50.000 0.00 0.00 35.14 4.00
636 637 1.955451 AATTACCCCGGTACACCAGA 58.045 50.000 0.00 0.00 35.14 3.86
637 638 2.185663 ATTACCCCGGTACACCAGAT 57.814 50.000 0.00 0.00 35.14 2.90
638 639 2.844654 TTACCCCGGTACACCAGATA 57.155 50.000 0.00 0.00 35.14 1.98
639 640 2.071778 TACCCCGGTACACCAGATAC 57.928 55.000 0.00 0.00 35.14 2.24
640 641 0.041535 ACCCCGGTACACCAGATACA 59.958 55.000 0.00 0.00 35.14 2.29
641 642 1.343681 ACCCCGGTACACCAGATACAT 60.344 52.381 0.00 0.00 35.14 2.29
642 643 1.766496 CCCCGGTACACCAGATACATT 59.234 52.381 0.00 0.00 35.14 2.71
643 644 2.224209 CCCCGGTACACCAGATACATTC 60.224 54.545 0.00 0.00 35.14 2.67
644 645 2.224209 CCCGGTACACCAGATACATTCC 60.224 54.545 0.00 0.00 35.14 3.01
645 646 2.224209 CCGGTACACCAGATACATTCCC 60.224 54.545 0.00 0.00 35.14 3.97
646 647 2.545113 CGGTACACCAGATACATTCCCG 60.545 54.545 0.00 0.00 35.14 5.14
647 648 2.480845 GTACACCAGATACATTCCCGC 58.519 52.381 0.00 0.00 0.00 6.13
648 649 1.204146 ACACCAGATACATTCCCGCT 58.796 50.000 0.00 0.00 0.00 5.52
649 650 1.139058 ACACCAGATACATTCCCGCTC 59.861 52.381 0.00 0.00 0.00 5.03
650 651 1.138859 CACCAGATACATTCCCGCTCA 59.861 52.381 0.00 0.00 0.00 4.26
651 652 1.139058 ACCAGATACATTCCCGCTCAC 59.861 52.381 0.00 0.00 0.00 3.51
652 653 1.414181 CCAGATACATTCCCGCTCACT 59.586 52.381 0.00 0.00 0.00 3.41
717 718 0.039617 CATCCAAAACTTCGCGGCAA 60.040 50.000 6.13 0.00 0.00 4.52
1024 1058 1.202879 TCTCATCACCCACCACCAAAC 60.203 52.381 0.00 0.00 0.00 2.93
1457 1579 1.076677 TCTAGGGTTCGTGGTTCTCCT 59.923 52.381 0.00 0.00 34.23 3.69
1474 1605 1.346395 TCCTTGTATGTCGCTGGTGTT 59.654 47.619 0.00 0.00 0.00 3.32
1543 1688 5.125417 TGGAATGGAAATTGCAGTAGCTTAC 59.875 40.000 0.00 0.00 42.74 2.34
1547 1692 2.437085 AATTGCAGTAGCTTACCCCC 57.563 50.000 0.00 0.00 42.74 5.40
1551 1696 0.468648 GCAGTAGCTTACCCCCGAAT 59.531 55.000 0.00 0.00 37.91 3.34
1565 1710 1.415659 CCCGAATTCCTCTGCATCTCT 59.584 52.381 0.00 0.00 0.00 3.10
1568 1713 3.431346 CCGAATTCCTCTGCATCTCTTGA 60.431 47.826 0.00 0.00 0.00 3.02
1570 1715 4.680172 CGAATTCCTCTGCATCTCTTGAGT 60.680 45.833 0.00 0.00 0.00 3.41
1587 1751 7.384115 TCTCTTGAGTACGGTTTCAGTATTTTG 59.616 37.037 0.00 0.00 0.00 2.44
1590 1754 5.527951 TGAGTACGGTTTCAGTATTTTGCAA 59.472 36.000 0.00 0.00 0.00 4.08
1592 1756 7.388224 TGAGTACGGTTTCAGTATTTTGCAATA 59.612 33.333 0.00 0.00 0.00 1.90
1600 1764 2.099098 AGTATTTTGCAATACGCTGGCC 59.901 45.455 0.00 0.00 46.66 5.36
1607 1771 1.013596 CAATACGCTGGCCGATTTCA 58.986 50.000 0.00 0.00 41.02 2.69
1611 1775 1.353103 CGCTGGCCGATTTCACATC 59.647 57.895 0.00 0.00 40.02 3.06
1615 1779 0.394216 TGGCCGATTTCACATCCCTG 60.394 55.000 0.00 0.00 0.00 4.45
1622 1786 4.341235 CCGATTTCACATCCCTGTACTCTA 59.659 45.833 0.00 0.00 33.14 2.43
1643 1808 3.333029 AAATTTTCTGCCCCCAAATCG 57.667 42.857 0.00 0.00 0.00 3.34
1656 1821 1.401018 CCAAATCGACTCGGTTTTGCC 60.401 52.381 6.96 0.00 38.14 4.52
1657 1822 0.879090 AAATCGACTCGGTTTTGCCC 59.121 50.000 3.76 0.00 36.79 5.36
1660 1825 2.114411 GACTCGGTTTTGCCCCCA 59.886 61.111 0.00 0.00 0.00 4.96
1661 1826 1.529713 GACTCGGTTTTGCCCCCAA 60.530 57.895 0.00 0.00 0.00 4.12
1674 1859 1.134610 GCCCCCAAATCTTCTGCATTG 60.135 52.381 0.00 0.00 0.00 2.82
1679 1864 4.240096 CCCAAATCTTCTGCATTGAACAC 58.760 43.478 0.00 0.00 0.00 3.32
1695 1880 2.550830 ACACCTCTGAACTGCGAAAT 57.449 45.000 0.00 0.00 0.00 2.17
1696 1881 2.851195 ACACCTCTGAACTGCGAAATT 58.149 42.857 0.00 0.00 0.00 1.82
1698 1883 2.160417 CACCTCTGAACTGCGAAATTCC 59.840 50.000 0.00 0.00 0.00 3.01
1701 1886 3.126000 CCTCTGAACTGCGAAATTCCTTC 59.874 47.826 0.00 0.00 0.00 3.46
1712 1897 4.489679 GAAATTCCTTCGAGCTGTTTGT 57.510 40.909 0.00 0.00 0.00 2.83
1713 1898 4.467735 GAAATTCCTTCGAGCTGTTTGTC 58.532 43.478 0.00 0.00 0.00 3.18
1714 1899 1.878953 TTCCTTCGAGCTGTTTGTCC 58.121 50.000 0.00 0.00 0.00 4.02
1715 1900 0.034896 TCCTTCGAGCTGTTTGTCCC 59.965 55.000 0.00 0.00 0.00 4.46
1726 1911 4.287067 AGCTGTTTGTCCCTCTCTGAATTA 59.713 41.667 0.00 0.00 0.00 1.40
1727 1912 5.003804 GCTGTTTGTCCCTCTCTGAATTAA 58.996 41.667 0.00 0.00 0.00 1.40
1730 1966 7.020827 TGTTTGTCCCTCTCTGAATTAATCT 57.979 36.000 0.00 0.00 0.00 2.40
1737 1973 6.388100 TCCCTCTCTGAATTAATCTCCATTGT 59.612 38.462 0.00 0.00 0.00 2.71
1739 1975 7.419981 CCCTCTCTGAATTAATCTCCATTGTCT 60.420 40.741 0.00 0.00 0.00 3.41
1752 1988 6.537355 TCTCCATTGTCTGTCTCTGAATTTT 58.463 36.000 0.00 0.00 0.00 1.82
1753 1989 7.000472 TCTCCATTGTCTGTCTCTGAATTTTT 59.000 34.615 0.00 0.00 0.00 1.94
1754 1990 7.173907 TCTCCATTGTCTGTCTCTGAATTTTTC 59.826 37.037 0.00 0.00 0.00 2.29
1769 2046 0.537143 TTTTCTGCACGCCCACTCAT 60.537 50.000 0.00 0.00 0.00 2.90
1807 2096 1.335597 CCGTCGAGTAACAACTGCAGA 60.336 52.381 23.35 0.00 0.00 4.26
1810 2099 1.060713 CGAGTAACAACTGCAGACGG 58.939 55.000 23.35 11.48 0.00 4.79
1841 2143 1.078426 CCGGAGAATGGAACGGCTT 60.078 57.895 0.00 0.00 39.85 4.35
1846 2148 2.427506 GAGAATGGAACGGCTTGTCTT 58.572 47.619 0.00 0.00 0.00 3.01
1940 2242 1.421485 GAGGTGCATTGCGTTCTCG 59.579 57.895 3.84 0.00 40.37 4.04
1946 2248 1.868997 CATTGCGTTCTCGTTGCCT 59.131 52.632 0.00 0.00 39.49 4.75
1947 2249 0.453282 CATTGCGTTCTCGTTGCCTG 60.453 55.000 0.00 0.00 39.49 4.85
1970 2274 1.964373 GTTCGTTCACGCCCCATGT 60.964 57.895 0.00 0.00 39.60 3.21
2035 2340 4.148825 GATGAGGGCGGTCGTGCT 62.149 66.667 0.00 0.00 34.52 4.40
2178 2483 4.083110 CCATCTCGATGTCTTTGCAAAAGT 60.083 41.667 13.84 0.00 37.11 2.66
2260 2568 2.092968 GGATGCACTACCAATCAGGACA 60.093 50.000 0.00 0.00 41.22 4.02
2356 2686 3.076621 TGAACTGTGATGTGAATCAGCC 58.923 45.455 0.00 0.00 0.00 4.85
2397 2728 5.636903 AATATAGGTGTTGACTGGCTGAT 57.363 39.130 0.00 0.00 0.00 2.90
2529 2865 9.295825 TCTTTGGCTGAAATTAGATTTTGACTA 57.704 29.630 0.00 0.00 31.47 2.59
2530 2866 9.346725 CTTTGGCTGAAATTAGATTTTGACTAC 57.653 33.333 0.00 0.00 31.47 2.73
2531 2867 7.391148 TGGCTGAAATTAGATTTTGACTACC 57.609 36.000 0.00 0.00 31.47 3.18
2532 2868 7.175104 TGGCTGAAATTAGATTTTGACTACCT 58.825 34.615 0.00 0.00 31.47 3.08
2533 2869 7.121168 TGGCTGAAATTAGATTTTGACTACCTG 59.879 37.037 0.00 0.00 31.47 4.00
2534 2870 7.336931 GGCTGAAATTAGATTTTGACTACCTGA 59.663 37.037 0.00 0.00 31.47 3.86
2535 2871 8.394121 GCTGAAATTAGATTTTGACTACCTGAG 58.606 37.037 0.00 0.00 31.47 3.35
2536 2872 9.442047 CTGAAATTAGATTTTGACTACCTGAGT 57.558 33.333 0.00 0.00 34.95 3.41
2549 2885 1.007479 ACCTGAGTAACCCGACCCATA 59.993 52.381 0.00 0.00 0.00 2.74
2605 2949 6.320672 AGTTGATTTCCTTGGCTGATAAGATG 59.679 38.462 0.00 0.00 0.00 2.90
2618 2962 7.994911 TGGCTGATAAGATGTATGAACTGAATT 59.005 33.333 0.00 0.00 0.00 2.17
2656 3000 0.400594 ACCAGTGTGGACCTAAAGGC 59.599 55.000 0.00 0.00 40.96 4.35
2668 3012 1.994779 CCTAAAGGCGCAAAATGCAAG 59.005 47.619 10.83 0.00 45.36 4.01
2703 3047 1.611977 GGTCTGGGTTTGGTTTACAGC 59.388 52.381 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.639298 CTTTCAGCGGCTTCCCTTCG 61.639 60.000 0.00 0.00 0.00 3.79
11 12 0.321653 TCTTTCAGCGGCTTCCCTTC 60.322 55.000 0.00 0.00 0.00 3.46
12 13 0.329596 ATCTTTCAGCGGCTTCCCTT 59.670 50.000 0.00 0.00 0.00 3.95
13 14 0.329596 AATCTTTCAGCGGCTTCCCT 59.670 50.000 0.00 0.00 0.00 4.20
14 15 0.453390 CAATCTTTCAGCGGCTTCCC 59.547 55.000 0.00 0.00 0.00 3.97
15 16 0.453390 CCAATCTTTCAGCGGCTTCC 59.547 55.000 0.00 0.00 0.00 3.46
16 17 0.179153 GCCAATCTTTCAGCGGCTTC 60.179 55.000 0.00 0.00 39.73 3.86
17 18 1.598701 GGCCAATCTTTCAGCGGCTT 61.599 55.000 0.00 0.00 42.56 4.35
18 19 2.048603 GGCCAATCTTTCAGCGGCT 61.049 57.895 0.00 0.00 42.56 5.52
19 20 1.997928 GAGGCCAATCTTTCAGCGGC 61.998 60.000 5.01 0.00 42.21 6.53
20 21 0.393537 AGAGGCCAATCTTTCAGCGG 60.394 55.000 5.01 0.00 0.00 5.52
21 22 1.012841 GAGAGGCCAATCTTTCAGCG 58.987 55.000 5.01 0.00 0.00 5.18
22 23 1.064832 AGGAGAGGCCAATCTTTCAGC 60.065 52.381 5.01 0.00 40.02 4.26
23 24 2.238144 TCAGGAGAGGCCAATCTTTCAG 59.762 50.000 5.01 0.00 40.02 3.02
24 25 2.026822 GTCAGGAGAGGCCAATCTTTCA 60.027 50.000 5.01 0.00 40.02 2.69
25 26 2.637947 GTCAGGAGAGGCCAATCTTTC 58.362 52.381 5.01 0.00 40.02 2.62
26 27 1.065854 CGTCAGGAGAGGCCAATCTTT 60.066 52.381 5.01 0.00 40.02 2.52
27 28 0.539051 CGTCAGGAGAGGCCAATCTT 59.461 55.000 5.01 0.00 40.02 2.40
28 29 1.333636 CCGTCAGGAGAGGCCAATCT 61.334 60.000 5.01 0.00 41.02 2.40
29 30 1.144936 CCGTCAGGAGAGGCCAATC 59.855 63.158 5.01 1.20 41.02 2.67
30 31 1.613630 ACCGTCAGGAGAGGCCAAT 60.614 57.895 5.01 0.00 41.02 3.16
31 32 2.203788 ACCGTCAGGAGAGGCCAA 60.204 61.111 5.01 0.00 41.02 4.52
32 33 2.997315 CACCGTCAGGAGAGGCCA 60.997 66.667 5.01 0.00 41.02 5.36
33 34 3.775654 CCACCGTCAGGAGAGGCC 61.776 72.222 0.00 0.00 41.02 5.19
34 35 4.459089 GCCACCGTCAGGAGAGGC 62.459 72.222 0.00 0.00 42.50 4.70
35 36 1.379977 TAGCCACCGTCAGGAGAGG 60.380 63.158 0.00 0.00 41.02 3.69
36 37 1.388065 CCTAGCCACCGTCAGGAGAG 61.388 65.000 0.00 0.00 41.02 3.20
37 38 1.379977 CCTAGCCACCGTCAGGAGA 60.380 63.158 0.00 0.00 41.02 3.71
38 39 0.757188 ATCCTAGCCACCGTCAGGAG 60.757 60.000 0.00 0.00 40.43 3.69
39 40 0.325296 AATCCTAGCCACCGTCAGGA 60.325 55.000 0.00 0.00 41.31 3.86
40 41 0.105039 GAATCCTAGCCACCGTCAGG 59.895 60.000 0.00 0.00 45.13 3.86
41 42 0.105039 GGAATCCTAGCCACCGTCAG 59.895 60.000 0.00 0.00 0.00 3.51
42 43 0.616395 TGGAATCCTAGCCACCGTCA 60.616 55.000 0.00 0.00 0.00 4.35
43 44 0.105039 CTGGAATCCTAGCCACCGTC 59.895 60.000 0.00 0.00 0.00 4.79
44 45 1.972660 GCTGGAATCCTAGCCACCGT 61.973 60.000 11.11 0.00 33.89 4.83
45 46 1.227674 GCTGGAATCCTAGCCACCG 60.228 63.158 11.11 0.00 33.89 4.94
46 47 4.887615 GCTGGAATCCTAGCCACC 57.112 61.111 11.11 0.00 33.89 4.61
50 51 0.249657 CTCGTGGCTGGAATCCTAGC 60.250 60.000 13.05 13.05 39.17 3.42
51 52 0.390860 CCTCGTGGCTGGAATCCTAG 59.609 60.000 0.00 0.00 0.00 3.02
52 53 0.032515 TCCTCGTGGCTGGAATCCTA 60.033 55.000 0.00 0.00 0.00 2.94
53 54 0.909610 TTCCTCGTGGCTGGAATCCT 60.910 55.000 0.00 0.00 37.42 3.24
54 55 0.744771 GTTCCTCGTGGCTGGAATCC 60.745 60.000 0.00 0.00 43.25 3.01
55 56 1.084370 CGTTCCTCGTGGCTGGAATC 61.084 60.000 0.00 0.00 43.25 2.52
56 57 1.079127 CGTTCCTCGTGGCTGGAAT 60.079 57.895 0.00 0.00 43.25 3.01
57 58 2.154798 CTCGTTCCTCGTGGCTGGAA 62.155 60.000 0.00 0.00 39.73 3.53
58 59 2.599281 TCGTTCCTCGTGGCTGGA 60.599 61.111 0.00 0.00 40.80 3.86
59 60 2.125912 CTCGTTCCTCGTGGCTGG 60.126 66.667 0.00 0.00 40.80 4.85
60 61 1.153939 CTCTCGTTCCTCGTGGCTG 60.154 63.158 0.00 0.00 40.80 4.85
61 62 2.344203 CCTCTCGTTCCTCGTGGCT 61.344 63.158 0.00 0.00 40.80 4.75
62 63 1.874345 TTCCTCTCGTTCCTCGTGGC 61.874 60.000 0.00 0.00 40.80 5.01
63 64 0.601558 TTTCCTCTCGTTCCTCGTGG 59.398 55.000 0.00 0.00 40.80 4.94
64 65 2.433868 TTTTCCTCTCGTTCCTCGTG 57.566 50.000 0.00 0.00 40.80 4.35
65 66 2.288886 CCTTTTTCCTCTCGTTCCTCGT 60.289 50.000 0.00 0.00 40.80 4.18
66 67 2.029290 TCCTTTTTCCTCTCGTTCCTCG 60.029 50.000 0.00 0.00 41.41 4.63
67 68 3.679824 TCCTTTTTCCTCTCGTTCCTC 57.320 47.619 0.00 0.00 0.00 3.71
68 69 3.807561 GCTTCCTTTTTCCTCTCGTTCCT 60.808 47.826 0.00 0.00 0.00 3.36
69 70 2.484651 GCTTCCTTTTTCCTCTCGTTCC 59.515 50.000 0.00 0.00 0.00 3.62
70 71 3.058846 GTGCTTCCTTTTTCCTCTCGTTC 60.059 47.826 0.00 0.00 0.00 3.95
71 72 2.879026 GTGCTTCCTTTTTCCTCTCGTT 59.121 45.455 0.00 0.00 0.00 3.85
72 73 2.158813 TGTGCTTCCTTTTTCCTCTCGT 60.159 45.455 0.00 0.00 0.00 4.18
73 74 2.494059 TGTGCTTCCTTTTTCCTCTCG 58.506 47.619 0.00 0.00 0.00 4.04
74 75 4.918810 TTTGTGCTTCCTTTTTCCTCTC 57.081 40.909 0.00 0.00 0.00 3.20
75 76 7.381323 CAATATTTGTGCTTCCTTTTTCCTCT 58.619 34.615 0.00 0.00 0.00 3.69
76 77 6.591448 CCAATATTTGTGCTTCCTTTTTCCTC 59.409 38.462 0.00 0.00 0.00 3.71
77 78 6.043127 ACCAATATTTGTGCTTCCTTTTTCCT 59.957 34.615 0.00 0.00 0.00 3.36
78 79 6.230472 ACCAATATTTGTGCTTCCTTTTTCC 58.770 36.000 0.00 0.00 0.00 3.13
79 80 7.728847 AACCAATATTTGTGCTTCCTTTTTC 57.271 32.000 0.00 0.00 0.00 2.29
80 81 7.772757 TGAAACCAATATTTGTGCTTCCTTTTT 59.227 29.630 0.00 0.00 0.00 1.94
81 82 7.226523 GTGAAACCAATATTTGTGCTTCCTTTT 59.773 33.333 0.00 0.00 0.00 2.27
82 83 6.705825 GTGAAACCAATATTTGTGCTTCCTTT 59.294 34.615 0.00 0.00 0.00 3.11
83 84 6.183360 TGTGAAACCAATATTTGTGCTTCCTT 60.183 34.615 0.00 0.00 34.36 3.36
84 85 5.304101 TGTGAAACCAATATTTGTGCTTCCT 59.696 36.000 0.00 0.00 34.36 3.36
85 86 5.537188 TGTGAAACCAATATTTGTGCTTCC 58.463 37.500 0.00 0.00 34.36 3.46
86 87 7.656707 ATTGTGAAACCAATATTTGTGCTTC 57.343 32.000 0.00 0.00 33.37 3.86
87 88 8.449251 AAATTGTGAAACCAATATTTGTGCTT 57.551 26.923 0.00 0.00 34.01 3.91
88 89 8.344098 CAAAATTGTGAAACCAATATTTGTGCT 58.656 29.630 0.00 0.00 34.01 4.40
89 90 7.113264 GCAAAATTGTGAAACCAATATTTGTGC 59.887 33.333 0.00 0.00 36.51 4.57
90 91 7.590689 GGCAAAATTGTGAAACCAATATTTGTG 59.409 33.333 0.00 0.00 36.51 3.33
91 92 7.501892 AGGCAAAATTGTGAAACCAATATTTGT 59.498 29.630 0.00 0.00 36.51 2.83
92 93 7.873910 AGGCAAAATTGTGAAACCAATATTTG 58.126 30.769 0.00 0.78 36.78 2.32
93 94 8.998377 GTAGGCAAAATTGTGAAACCAATATTT 58.002 29.630 0.00 0.00 34.01 1.40
94 95 7.606073 GGTAGGCAAAATTGTGAAACCAATATT 59.394 33.333 0.00 0.00 34.01 1.28
95 96 7.102993 GGTAGGCAAAATTGTGAAACCAATAT 58.897 34.615 0.00 0.00 34.01 1.28
96 97 6.042093 TGGTAGGCAAAATTGTGAAACCAATA 59.958 34.615 12.34 0.00 34.01 1.90
97 98 5.163258 TGGTAGGCAAAATTGTGAAACCAAT 60.163 36.000 12.34 0.00 36.62 3.16
98 99 4.162320 TGGTAGGCAAAATTGTGAAACCAA 59.838 37.500 12.34 1.12 34.36 3.67
99 100 3.706594 TGGTAGGCAAAATTGTGAAACCA 59.293 39.130 11.21 11.21 34.36 3.67
100 101 4.038642 TCTGGTAGGCAAAATTGTGAAACC 59.961 41.667 0.00 3.87 34.36 3.27
101 102 4.982295 GTCTGGTAGGCAAAATTGTGAAAC 59.018 41.667 0.00 0.00 37.35 2.78
102 103 4.038642 GGTCTGGTAGGCAAAATTGTGAAA 59.961 41.667 0.00 0.00 0.00 2.69
103 104 3.572255 GGTCTGGTAGGCAAAATTGTGAA 59.428 43.478 0.00 0.00 0.00 3.18
104 105 3.153919 GGTCTGGTAGGCAAAATTGTGA 58.846 45.455 0.00 0.00 0.00 3.58
105 106 2.890311 TGGTCTGGTAGGCAAAATTGTG 59.110 45.455 0.00 0.00 0.00 3.33
106 107 3.157087 CTGGTCTGGTAGGCAAAATTGT 58.843 45.455 0.00 0.00 0.00 2.71
107 108 3.420893 TCTGGTCTGGTAGGCAAAATTG 58.579 45.455 0.00 0.00 0.00 2.32
108 109 3.074538 ACTCTGGTCTGGTAGGCAAAATT 59.925 43.478 0.00 0.00 0.00 1.82
109 110 2.644798 ACTCTGGTCTGGTAGGCAAAAT 59.355 45.455 0.00 0.00 0.00 1.82
110 111 2.038557 GACTCTGGTCTGGTAGGCAAAA 59.961 50.000 0.00 0.00 39.24 2.44
111 112 1.623811 GACTCTGGTCTGGTAGGCAAA 59.376 52.381 0.00 0.00 39.24 3.68
112 113 1.267121 GACTCTGGTCTGGTAGGCAA 58.733 55.000 0.00 0.00 39.24 4.52
113 114 0.965866 CGACTCTGGTCTGGTAGGCA 60.966 60.000 0.00 0.00 40.10 4.75
114 115 0.966370 ACGACTCTGGTCTGGTAGGC 60.966 60.000 0.00 0.00 40.10 3.93
115 116 0.811915 CACGACTCTGGTCTGGTAGG 59.188 60.000 0.00 0.00 40.10 3.18
116 117 0.811915 CCACGACTCTGGTCTGGTAG 59.188 60.000 0.00 0.00 40.10 3.18
117 118 0.402887 TCCACGACTCTGGTCTGGTA 59.597 55.000 0.00 1.85 39.50 3.25
118 119 0.469331 TTCCACGACTCTGGTCTGGT 60.469 55.000 0.00 0.00 39.50 4.00
119 120 0.679505 TTTCCACGACTCTGGTCTGG 59.320 55.000 0.00 0.00 40.10 3.86
120 121 2.135933 GTTTTCCACGACTCTGGTCTG 58.864 52.381 0.00 0.00 40.10 3.51
121 122 2.528041 GTTTTCCACGACTCTGGTCT 57.472 50.000 0.00 0.00 40.10 3.85
141 142 2.132762 CGGATGGAAGGCGTATTGTAC 58.867 52.381 0.00 0.00 0.00 2.90
142 143 1.539496 GCGGATGGAAGGCGTATTGTA 60.539 52.381 0.00 0.00 0.00 2.41
143 144 0.814010 GCGGATGGAAGGCGTATTGT 60.814 55.000 0.00 0.00 0.00 2.71
144 145 1.831389 CGCGGATGGAAGGCGTATTG 61.831 60.000 0.00 0.00 44.52 1.90
145 146 1.594293 CGCGGATGGAAGGCGTATT 60.594 57.895 0.00 0.00 44.52 1.89
146 147 2.029073 CGCGGATGGAAGGCGTAT 59.971 61.111 0.00 0.00 44.52 3.06
151 152 4.514577 ACGAGCGCGGATGGAAGG 62.515 66.667 15.86 0.00 43.17 3.46
152 153 2.956964 GACGAGCGCGGATGGAAG 60.957 66.667 15.86 0.00 43.17 3.46
153 154 4.847516 CGACGAGCGCGGATGGAA 62.848 66.667 15.86 0.00 43.17 3.53
155 156 3.744749 TTACGACGAGCGCGGATGG 62.745 63.158 15.86 2.47 46.04 3.51
156 157 2.277692 TTACGACGAGCGCGGATG 60.278 61.111 15.86 5.73 46.04 3.51
157 158 2.277756 GTTACGACGAGCGCGGAT 60.278 61.111 15.86 1.11 46.04 4.18
158 159 4.465512 GGTTACGACGAGCGCGGA 62.466 66.667 15.86 0.00 46.04 5.54
159 160 4.764336 TGGTTACGACGAGCGCGG 62.764 66.667 15.86 0.00 46.04 6.46
160 161 2.774951 CTTGGTTACGACGAGCGCG 61.775 63.158 8.75 8.75 46.04 6.86
161 162 1.280206 AACTTGGTTACGACGAGCGC 61.280 55.000 0.00 0.00 46.04 5.92
163 164 3.695005 GTAAACTTGGTTACGACGAGC 57.305 47.619 0.00 0.00 0.00 5.03
170 171 4.816786 TTGAAGGCGTAAACTTGGTTAC 57.183 40.909 0.00 0.00 0.00 2.50
171 172 4.036616 GGTTTGAAGGCGTAAACTTGGTTA 59.963 41.667 11.84 0.00 37.07 2.85
172 173 3.181484 GGTTTGAAGGCGTAAACTTGGTT 60.181 43.478 11.84 0.00 37.07 3.67
173 174 2.359848 GGTTTGAAGGCGTAAACTTGGT 59.640 45.455 11.84 0.00 37.07 3.67
174 175 2.359531 TGGTTTGAAGGCGTAAACTTGG 59.640 45.455 11.84 0.00 37.07 3.61
175 176 3.066203 ACTGGTTTGAAGGCGTAAACTTG 59.934 43.478 11.84 8.63 37.07 3.16
176 177 3.284617 ACTGGTTTGAAGGCGTAAACTT 58.715 40.909 11.84 0.00 37.07 2.66
177 178 2.927028 ACTGGTTTGAAGGCGTAAACT 58.073 42.857 11.84 0.00 37.07 2.66
178 179 3.549423 GGAACTGGTTTGAAGGCGTAAAC 60.549 47.826 5.96 5.96 36.35 2.01
179 180 2.619646 GGAACTGGTTTGAAGGCGTAAA 59.380 45.455 0.00 0.00 0.00 2.01
180 181 2.223745 GGAACTGGTTTGAAGGCGTAA 58.776 47.619 0.00 0.00 0.00 3.18
181 182 1.874739 CGGAACTGGTTTGAAGGCGTA 60.875 52.381 0.00 0.00 0.00 4.42
182 183 1.164041 CGGAACTGGTTTGAAGGCGT 61.164 55.000 0.00 0.00 0.00 5.68
183 184 1.164041 ACGGAACTGGTTTGAAGGCG 61.164 55.000 0.00 0.00 0.00 5.52
184 185 0.310854 CACGGAACTGGTTTGAAGGC 59.689 55.000 0.00 0.00 0.00 4.35
185 186 0.951558 CCACGGAACTGGTTTGAAGG 59.048 55.000 0.00 0.00 0.00 3.46
186 187 0.310854 GCCACGGAACTGGTTTGAAG 59.689 55.000 0.00 0.00 33.30 3.02
187 188 1.104577 GGCCACGGAACTGGTTTGAA 61.105 55.000 0.00 0.00 33.30 2.69
188 189 1.527380 GGCCACGGAACTGGTTTGA 60.527 57.895 0.00 0.00 33.30 2.69
189 190 1.528309 AGGCCACGGAACTGGTTTG 60.528 57.895 5.01 0.00 33.30 2.93
190 191 1.528309 CAGGCCACGGAACTGGTTT 60.528 57.895 5.01 0.00 33.30 3.27
191 192 2.113139 CAGGCCACGGAACTGGTT 59.887 61.111 5.01 0.00 33.30 3.67
192 193 4.643387 GCAGGCCACGGAACTGGT 62.643 66.667 5.01 0.00 33.30 4.00
193 194 4.335647 AGCAGGCCACGGAACTGG 62.336 66.667 5.01 0.00 32.98 4.00
194 195 2.743928 GAGCAGGCCACGGAACTG 60.744 66.667 5.01 0.00 35.40 3.16
195 196 3.241530 TGAGCAGGCCACGGAACT 61.242 61.111 5.01 0.00 0.00 3.01
196 197 3.050275 GTGAGCAGGCCACGGAAC 61.050 66.667 5.01 0.00 0.00 3.62
197 198 3.240134 GAGTGAGCAGGCCACGGAA 62.240 63.158 5.01 0.00 39.38 4.30
198 199 3.695606 GAGTGAGCAGGCCACGGA 61.696 66.667 5.01 0.00 39.38 4.69
199 200 4.007644 TGAGTGAGCAGGCCACGG 62.008 66.667 5.01 0.00 39.38 4.94
200 201 2.740055 GTGAGTGAGCAGGCCACG 60.740 66.667 5.01 0.00 39.38 4.94
201 202 2.740055 CGTGAGTGAGCAGGCCAC 60.740 66.667 5.01 0.00 34.89 5.01
202 203 4.007644 CCGTGAGTGAGCAGGCCA 62.008 66.667 5.01 0.00 0.00 5.36
203 204 4.767255 CCCGTGAGTGAGCAGGCC 62.767 72.222 0.00 0.00 0.00 5.19
204 205 3.240134 TTCCCGTGAGTGAGCAGGC 62.240 63.158 0.00 0.00 0.00 4.85
205 206 1.374758 GTTCCCGTGAGTGAGCAGG 60.375 63.158 0.00 0.00 0.00 4.85
206 207 1.734477 CGTTCCCGTGAGTGAGCAG 60.734 63.158 0.00 0.00 0.00 4.24
207 208 2.338620 CGTTCCCGTGAGTGAGCA 59.661 61.111 0.00 0.00 0.00 4.26
217 218 2.034939 TGGTGCACTATATACGTTCCCG 59.965 50.000 17.98 0.00 40.83 5.14
218 219 3.738830 TGGTGCACTATATACGTTCCC 57.261 47.619 17.98 0.00 0.00 3.97
219 220 4.940463 TCTTGGTGCACTATATACGTTCC 58.060 43.478 17.98 0.00 0.00 3.62
220 221 8.758633 ATTATCTTGGTGCACTATATACGTTC 57.241 34.615 17.98 0.00 0.00 3.95
221 222 9.555727 AAATTATCTTGGTGCACTATATACGTT 57.444 29.630 17.98 6.87 0.00 3.99
222 223 8.988934 CAAATTATCTTGGTGCACTATATACGT 58.011 33.333 17.98 0.00 0.00 3.57
223 224 8.988934 ACAAATTATCTTGGTGCACTATATACG 58.011 33.333 17.98 3.91 0.00 3.06
225 226 8.783093 GCACAAATTATCTTGGTGCACTATATA 58.217 33.333 17.98 9.03 35.37 0.86
226 227 7.503566 AGCACAAATTATCTTGGTGCACTATAT 59.496 33.333 17.98 10.03 36.57 0.86
227 228 6.828273 AGCACAAATTATCTTGGTGCACTATA 59.172 34.615 17.98 7.16 36.57 1.31
228 229 5.653769 AGCACAAATTATCTTGGTGCACTAT 59.346 36.000 17.98 8.12 36.57 2.12
229 230 5.009631 AGCACAAATTATCTTGGTGCACTA 58.990 37.500 17.98 8.10 36.57 2.74
230 231 3.828451 AGCACAAATTATCTTGGTGCACT 59.172 39.130 17.98 0.00 36.57 4.40
231 232 4.178545 AGCACAAATTATCTTGGTGCAC 57.821 40.909 17.20 8.80 36.57 4.57
232 233 4.157656 GGTAGCACAAATTATCTTGGTGCA 59.842 41.667 17.20 3.73 36.57 4.57
233 234 4.157656 TGGTAGCACAAATTATCTTGGTGC 59.842 41.667 9.00 9.00 35.44 5.01
234 235 5.415701 ACTGGTAGCACAAATTATCTTGGTG 59.584 40.000 0.00 0.00 0.00 4.17
235 236 5.415701 CACTGGTAGCACAAATTATCTTGGT 59.584 40.000 0.00 0.00 0.00 3.67
236 237 5.677091 GCACTGGTAGCACAAATTATCTTGG 60.677 44.000 0.00 0.00 0.00 3.61
237 238 5.106197 TGCACTGGTAGCACAAATTATCTTG 60.106 40.000 0.00 0.00 37.02 3.02
238 239 5.009631 TGCACTGGTAGCACAAATTATCTT 58.990 37.500 0.00 0.00 37.02 2.40
239 240 4.588899 TGCACTGGTAGCACAAATTATCT 58.411 39.130 0.00 0.00 37.02 1.98
240 241 4.963276 TGCACTGGTAGCACAAATTATC 57.037 40.909 0.00 0.00 37.02 1.75
249 250 2.920384 TCCGGTGCACTGGTAGCA 60.920 61.111 37.57 20.58 43.01 3.49
250 251 2.434359 GTCCGGTGCACTGGTAGC 60.434 66.667 37.57 26.07 43.01 3.58
251 252 2.264794 GGTCCGGTGCACTGGTAG 59.735 66.667 37.57 17.88 43.01 3.18
252 253 3.315949 GGGTCCGGTGCACTGGTA 61.316 66.667 37.57 24.29 43.01 3.25
264 265 1.175983 TTGAATGTGCAACGGGGTCC 61.176 55.000 0.00 0.00 42.39 4.46
265 266 0.671251 TTTGAATGTGCAACGGGGTC 59.329 50.000 0.00 0.00 42.39 4.46
266 267 1.115467 TTTTGAATGTGCAACGGGGT 58.885 45.000 0.00 0.00 42.39 4.95
267 268 2.231215 TTTTTGAATGTGCAACGGGG 57.769 45.000 0.00 0.00 42.39 5.73
268 269 5.636965 TGAATATTTTTGAATGTGCAACGGG 59.363 36.000 0.00 0.00 42.39 5.28
269 270 6.702972 TGAATATTTTTGAATGTGCAACGG 57.297 33.333 0.00 0.00 42.39 4.44
270 271 8.984482 TTTTGAATATTTTTGAATGTGCAACG 57.016 26.923 0.00 0.00 42.39 4.10
295 296 8.586273 CGATGCACTCAATTATTTTCGAATTTT 58.414 29.630 0.00 0.00 0.00 1.82
296 297 7.967854 TCGATGCACTCAATTATTTTCGAATTT 59.032 29.630 0.00 0.00 31.02 1.82
297 298 7.429340 GTCGATGCACTCAATTATTTTCGAATT 59.571 33.333 0.00 0.00 35.22 2.17
298 299 6.907212 GTCGATGCACTCAATTATTTTCGAAT 59.093 34.615 0.00 0.00 35.22 3.34
299 300 6.128418 TGTCGATGCACTCAATTATTTTCGAA 60.128 34.615 0.00 0.00 35.22 3.71
300 301 5.350091 TGTCGATGCACTCAATTATTTTCGA 59.650 36.000 0.00 0.00 0.00 3.71
301 302 5.449113 GTGTCGATGCACTCAATTATTTTCG 59.551 40.000 0.00 0.00 36.51 3.46
302 303 6.314018 TGTGTCGATGCACTCAATTATTTTC 58.686 36.000 7.57 0.00 39.89 2.29
303 304 6.252967 TGTGTCGATGCACTCAATTATTTT 57.747 33.333 7.57 0.00 39.89 1.82
304 305 5.878332 TGTGTCGATGCACTCAATTATTT 57.122 34.783 7.57 0.00 39.89 1.40
305 306 5.181056 TGTTGTGTCGATGCACTCAATTATT 59.819 36.000 7.57 0.00 39.89 1.40
306 307 4.694982 TGTTGTGTCGATGCACTCAATTAT 59.305 37.500 7.57 0.00 39.89 1.28
307 308 4.061596 TGTTGTGTCGATGCACTCAATTA 58.938 39.130 7.57 0.00 39.89 1.40
308 309 2.877786 TGTTGTGTCGATGCACTCAATT 59.122 40.909 7.57 0.00 39.89 2.32
309 310 2.493035 TGTTGTGTCGATGCACTCAAT 58.507 42.857 7.57 0.00 39.89 2.57
310 311 1.946745 TGTTGTGTCGATGCACTCAA 58.053 45.000 7.57 0.00 39.89 3.02
311 312 2.068519 GATGTTGTGTCGATGCACTCA 58.931 47.619 7.57 7.20 39.89 3.41
312 313 2.068519 TGATGTTGTGTCGATGCACTC 58.931 47.619 7.57 2.57 39.89 3.51
313 314 2.168326 TGATGTTGTGTCGATGCACT 57.832 45.000 7.57 0.00 39.89 4.40
314 315 2.967459 TTGATGTTGTGTCGATGCAC 57.033 45.000 0.00 0.00 39.65 4.57
315 316 2.813172 ACATTGATGTTGTGTCGATGCA 59.187 40.909 0.00 0.00 39.89 3.96
316 317 3.476295 ACATTGATGTTGTGTCGATGC 57.524 42.857 0.00 0.00 39.89 3.91
317 318 6.110543 ACATACATTGATGTTGTGTCGATG 57.889 37.500 1.46 1.38 41.97 3.84
318 319 6.741992 AACATACATTGATGTTGTGTCGAT 57.258 33.333 1.46 0.00 46.00 3.59
352 353 9.719279 GAGCATTGTTTTGAATTTTGATTTGAA 57.281 25.926 0.00 0.00 0.00 2.69
353 354 8.890718 TGAGCATTGTTTTGAATTTTGATTTGA 58.109 25.926 0.00 0.00 0.00 2.69
354 355 9.504710 TTGAGCATTGTTTTGAATTTTGATTTG 57.495 25.926 0.00 0.00 0.00 2.32
355 356 9.724839 CTTGAGCATTGTTTTGAATTTTGATTT 57.275 25.926 0.00 0.00 0.00 2.17
356 357 9.111613 TCTTGAGCATTGTTTTGAATTTTGATT 57.888 25.926 0.00 0.00 0.00 2.57
357 358 8.665643 TCTTGAGCATTGTTTTGAATTTTGAT 57.334 26.923 0.00 0.00 0.00 2.57
358 359 8.665643 ATCTTGAGCATTGTTTTGAATTTTGA 57.334 26.923 0.00 0.00 0.00 2.69
359 360 9.801714 GTATCTTGAGCATTGTTTTGAATTTTG 57.198 29.630 0.00 0.00 0.00 2.44
360 361 9.545105 TGTATCTTGAGCATTGTTTTGAATTTT 57.455 25.926 0.00 0.00 0.00 1.82
361 362 9.545105 TTGTATCTTGAGCATTGTTTTGAATTT 57.455 25.926 0.00 0.00 0.00 1.82
362 363 9.545105 TTTGTATCTTGAGCATTGTTTTGAATT 57.455 25.926 0.00 0.00 0.00 2.17
363 364 9.545105 TTTTGTATCTTGAGCATTGTTTTGAAT 57.455 25.926 0.00 0.00 0.00 2.57
364 365 8.939201 TTTTGTATCTTGAGCATTGTTTTGAA 57.061 26.923 0.00 0.00 0.00 2.69
365 366 8.939201 TTTTTGTATCTTGAGCATTGTTTTGA 57.061 26.923 0.00 0.00 0.00 2.69
366 367 9.588774 CATTTTTGTATCTTGAGCATTGTTTTG 57.411 29.630 0.00 0.00 0.00 2.44
367 368 9.545105 TCATTTTTGTATCTTGAGCATTGTTTT 57.455 25.926 0.00 0.00 0.00 2.43
368 369 9.715121 ATCATTTTTGTATCTTGAGCATTGTTT 57.285 25.926 0.00 0.00 0.00 2.83
387 388 8.938906 GCACATTGAGGTCAAATTTATCATTTT 58.061 29.630 0.00 0.00 39.55 1.82
388 389 8.316214 AGCACATTGAGGTCAAATTTATCATTT 58.684 29.630 0.00 0.00 39.55 2.32
389 390 7.844009 AGCACATTGAGGTCAAATTTATCATT 58.156 30.769 0.00 0.00 39.55 2.57
390 391 7.414222 AGCACATTGAGGTCAAATTTATCAT 57.586 32.000 0.00 0.00 39.55 2.45
391 392 6.839124 AGCACATTGAGGTCAAATTTATCA 57.161 33.333 0.00 0.00 39.55 2.15
392 393 9.241317 CATTAGCACATTGAGGTCAAATTTATC 57.759 33.333 0.00 0.00 39.55 1.75
393 394 8.199449 CCATTAGCACATTGAGGTCAAATTTAT 58.801 33.333 0.00 0.00 39.55 1.40
394 395 7.363705 CCCATTAGCACATTGAGGTCAAATTTA 60.364 37.037 0.00 0.00 39.55 1.40
395 396 6.400568 CCATTAGCACATTGAGGTCAAATTT 58.599 36.000 0.00 0.00 39.55 1.82
396 397 5.105228 CCCATTAGCACATTGAGGTCAAATT 60.105 40.000 0.00 0.00 39.55 1.82
397 398 4.403432 CCCATTAGCACATTGAGGTCAAAT 59.597 41.667 0.00 0.00 39.55 2.32
398 399 3.763360 CCCATTAGCACATTGAGGTCAAA 59.237 43.478 0.00 0.00 39.55 2.69
399 400 3.355378 CCCATTAGCACATTGAGGTCAA 58.645 45.455 0.00 0.00 40.51 3.18
400 401 2.945440 GCCCATTAGCACATTGAGGTCA 60.945 50.000 0.00 0.00 0.00 4.02
401 402 1.678101 GCCCATTAGCACATTGAGGTC 59.322 52.381 0.00 0.00 0.00 3.85
402 403 1.686115 GGCCCATTAGCACATTGAGGT 60.686 52.381 0.00 0.00 0.00 3.85
403 404 1.035139 GGCCCATTAGCACATTGAGG 58.965 55.000 0.00 0.00 0.00 3.86
404 405 1.766494 TGGCCCATTAGCACATTGAG 58.234 50.000 0.00 0.00 0.00 3.02
405 406 2.228545 TTGGCCCATTAGCACATTGA 57.771 45.000 0.00 0.00 0.00 2.57
406 407 3.002102 GTTTTGGCCCATTAGCACATTG 58.998 45.455 0.00 0.00 0.00 2.82
407 408 2.905736 AGTTTTGGCCCATTAGCACATT 59.094 40.909 0.00 0.00 0.00 2.71
408 409 2.234414 CAGTTTTGGCCCATTAGCACAT 59.766 45.455 0.00 0.00 0.00 3.21
409 410 1.617850 CAGTTTTGGCCCATTAGCACA 59.382 47.619 0.00 0.00 0.00 4.57
410 411 1.892474 TCAGTTTTGGCCCATTAGCAC 59.108 47.619 0.00 0.00 0.00 4.40
411 412 2.300956 TCAGTTTTGGCCCATTAGCA 57.699 45.000 0.00 0.00 0.00 3.49
412 413 2.675032 GCTTCAGTTTTGGCCCATTAGC 60.675 50.000 0.00 0.00 0.00 3.09
413 414 2.094026 GGCTTCAGTTTTGGCCCATTAG 60.094 50.000 0.00 0.00 38.77 1.73
414 415 1.899142 GGCTTCAGTTTTGGCCCATTA 59.101 47.619 0.00 0.00 38.77 1.90
415 416 0.686789 GGCTTCAGTTTTGGCCCATT 59.313 50.000 0.00 0.00 38.77 3.16
416 417 2.365410 GGCTTCAGTTTTGGCCCAT 58.635 52.632 0.00 0.00 38.77 4.00
417 418 3.869481 GGCTTCAGTTTTGGCCCA 58.131 55.556 0.00 0.00 38.77 5.36
419 420 0.249868 GTTGGGCTTCAGTTTTGGCC 60.250 55.000 0.00 0.00 45.24 5.36
420 421 0.752658 AGTTGGGCTTCAGTTTTGGC 59.247 50.000 0.00 0.00 0.00 4.52
421 422 2.168313 ACAAGTTGGGCTTCAGTTTTGG 59.832 45.455 7.96 0.00 34.69 3.28
422 423 3.189285 CACAAGTTGGGCTTCAGTTTTG 58.811 45.455 7.96 0.00 34.69 2.44
423 424 2.831526 ACACAAGTTGGGCTTCAGTTTT 59.168 40.909 4.63 0.00 34.69 2.43
424 425 2.456577 ACACAAGTTGGGCTTCAGTTT 58.543 42.857 4.63 0.00 34.69 2.66
425 426 2.143876 ACACAAGTTGGGCTTCAGTT 57.856 45.000 4.63 0.00 34.69 3.16
426 427 2.143876 AACACAAGTTGGGCTTCAGT 57.856 45.000 4.63 0.00 36.39 3.41
427 428 2.032030 CGTAACACAAGTTGGGCTTCAG 60.032 50.000 4.63 0.00 38.69 3.02
428 429 1.944024 CGTAACACAAGTTGGGCTTCA 59.056 47.619 4.63 0.00 38.69 3.02
429 430 1.944709 ACGTAACACAAGTTGGGCTTC 59.055 47.619 4.63 0.00 38.69 3.86
430 431 2.047002 ACGTAACACAAGTTGGGCTT 57.953 45.000 4.63 1.74 38.69 4.35
431 432 2.103601 AGTACGTAACACAAGTTGGGCT 59.896 45.455 4.63 0.00 38.69 5.19
432 433 2.486918 AGTACGTAACACAAGTTGGGC 58.513 47.619 4.63 0.00 38.69 5.36
433 434 5.349543 GGAATAGTACGTAACACAAGTTGGG 59.650 44.000 2.79 2.79 38.69 4.12
434 435 5.061311 CGGAATAGTACGTAACACAAGTTGG 59.939 44.000 7.96 0.00 38.69 3.77
435 436 5.630680 ACGGAATAGTACGTAACACAAGTTG 59.369 40.000 0.00 0.00 42.15 3.16
436 437 5.630680 CACGGAATAGTACGTAACACAAGTT 59.369 40.000 0.00 0.00 42.04 2.66
437 438 5.156355 CACGGAATAGTACGTAACACAAGT 58.844 41.667 0.00 0.00 42.04 3.16
438 439 5.156355 ACACGGAATAGTACGTAACACAAG 58.844 41.667 0.00 0.00 42.04 3.16
439 440 5.119931 ACACGGAATAGTACGTAACACAA 57.880 39.130 0.00 0.00 42.04 3.33
440 441 4.215185 TGACACGGAATAGTACGTAACACA 59.785 41.667 0.00 0.00 42.04 3.72
441 442 4.722194 TGACACGGAATAGTACGTAACAC 58.278 43.478 0.00 0.00 42.04 3.32
442 443 5.369685 TTGACACGGAATAGTACGTAACA 57.630 39.130 0.00 0.88 42.04 2.41
443 444 6.875926 ATTTGACACGGAATAGTACGTAAC 57.124 37.500 0.00 0.00 42.04 2.50
444 445 7.384660 ACAAATTTGACACGGAATAGTACGTAA 59.615 33.333 24.64 0.00 42.04 3.18
445 446 6.867816 ACAAATTTGACACGGAATAGTACGTA 59.132 34.615 24.64 0.00 42.04 3.57
446 447 5.697633 ACAAATTTGACACGGAATAGTACGT 59.302 36.000 24.64 0.00 45.25 3.57
447 448 6.160664 ACAAATTTGACACGGAATAGTACG 57.839 37.500 24.64 0.00 0.00 3.67
450 451 9.974980 AAAATAACAAATTTGACACGGAATAGT 57.025 25.926 24.64 0.00 0.00 2.12
528 529 4.859304 AGTGCATTGACACAACATCAAT 57.141 36.364 11.85 0.00 45.57 2.57
529 530 5.764487 TTAGTGCATTGACACAACATCAA 57.236 34.783 11.85 0.00 43.23 2.57
530 531 5.764487 TTTAGTGCATTGACACAACATCA 57.236 34.783 11.85 0.00 43.23 3.07
531 532 7.642071 AAATTTAGTGCATTGACACAACATC 57.358 32.000 11.85 0.00 43.23 3.06
532 533 8.436046 AAAAATTTAGTGCATTGACACAACAT 57.564 26.923 11.85 1.17 43.23 2.71
533 534 7.840342 AAAAATTTAGTGCATTGACACAACA 57.160 28.000 11.85 0.00 43.23 3.33
577 578 4.972201 GGTCGTCCGTTGCATATTAAAAA 58.028 39.130 0.00 0.00 0.00 1.94
578 579 4.603231 GGTCGTCCGTTGCATATTAAAA 57.397 40.909 0.00 0.00 0.00 1.52
602 603 2.680841 GGTAATTTGTGCTATCGGTGCA 59.319 45.455 0.00 0.00 38.19 4.57
603 604 2.032924 GGGTAATTTGTGCTATCGGTGC 59.967 50.000 0.00 0.00 0.00 5.01
604 605 2.616842 GGGGTAATTTGTGCTATCGGTG 59.383 50.000 0.00 0.00 0.00 4.94
605 606 2.743838 CGGGGTAATTTGTGCTATCGGT 60.744 50.000 0.00 0.00 0.00 4.69
606 607 1.871039 CGGGGTAATTTGTGCTATCGG 59.129 52.381 0.00 0.00 0.00 4.18
607 608 1.871039 CCGGGGTAATTTGTGCTATCG 59.129 52.381 0.00 0.00 0.00 2.92
608 609 2.927028 ACCGGGGTAATTTGTGCTATC 58.073 47.619 6.32 0.00 0.00 2.08
609 610 3.200385 TGTACCGGGGTAATTTGTGCTAT 59.800 43.478 6.32 0.00 31.86 2.97
610 611 2.570752 TGTACCGGGGTAATTTGTGCTA 59.429 45.455 6.32 0.00 31.86 3.49
611 612 1.351683 TGTACCGGGGTAATTTGTGCT 59.648 47.619 6.32 0.00 31.86 4.40
612 613 1.469703 GTGTACCGGGGTAATTTGTGC 59.530 52.381 6.32 0.00 31.86 4.57
613 614 2.086094 GGTGTACCGGGGTAATTTGTG 58.914 52.381 6.32 0.00 31.86 3.33
614 615 1.704070 TGGTGTACCGGGGTAATTTGT 59.296 47.619 6.32 0.00 39.43 2.83
615 616 2.027007 TCTGGTGTACCGGGGTAATTTG 60.027 50.000 6.32 0.00 42.72 2.32
616 617 2.268107 TCTGGTGTACCGGGGTAATTT 58.732 47.619 6.32 0.00 42.72 1.82
617 618 1.955451 TCTGGTGTACCGGGGTAATT 58.045 50.000 6.32 0.00 42.72 1.40
618 619 2.185663 ATCTGGTGTACCGGGGTAAT 57.814 50.000 6.32 0.00 42.72 1.89
619 620 2.292126 TGTATCTGGTGTACCGGGGTAA 60.292 50.000 6.32 0.00 42.72 2.85
620 621 1.287442 TGTATCTGGTGTACCGGGGTA 59.713 52.381 6.32 0.00 42.72 3.69
621 622 0.041535 TGTATCTGGTGTACCGGGGT 59.958 55.000 6.32 0.00 42.72 4.95
622 623 1.420430 ATGTATCTGGTGTACCGGGG 58.580 55.000 6.32 0.00 42.72 5.73
623 624 2.224209 GGAATGTATCTGGTGTACCGGG 60.224 54.545 6.32 0.00 42.72 5.73
624 625 2.224209 GGGAATGTATCTGGTGTACCGG 60.224 54.545 0.00 0.00 43.86 5.28
625 626 2.545113 CGGGAATGTATCTGGTGTACCG 60.545 54.545 0.00 0.00 39.43 4.02
626 627 2.805657 GCGGGAATGTATCTGGTGTACC 60.806 54.545 0.00 0.00 0.00 3.34
627 628 2.102588 AGCGGGAATGTATCTGGTGTAC 59.897 50.000 0.00 0.00 0.00 2.90
628 629 2.364324 GAGCGGGAATGTATCTGGTGTA 59.636 50.000 0.00 0.00 0.00 2.90
629 630 1.139058 GAGCGGGAATGTATCTGGTGT 59.861 52.381 0.00 0.00 0.00 4.16
630 631 1.138859 TGAGCGGGAATGTATCTGGTG 59.861 52.381 0.00 0.00 0.00 4.17
631 632 1.139058 GTGAGCGGGAATGTATCTGGT 59.861 52.381 0.00 0.00 0.00 4.00
632 633 1.414181 AGTGAGCGGGAATGTATCTGG 59.586 52.381 0.00 0.00 0.00 3.86
633 634 2.101415 TGAGTGAGCGGGAATGTATCTG 59.899 50.000 0.00 0.00 0.00 2.90
634 635 2.101582 GTGAGTGAGCGGGAATGTATCT 59.898 50.000 0.00 0.00 0.00 1.98
635 636 2.159099 TGTGAGTGAGCGGGAATGTATC 60.159 50.000 0.00 0.00 0.00 2.24
636 637 1.831106 TGTGAGTGAGCGGGAATGTAT 59.169 47.619 0.00 0.00 0.00 2.29
637 638 1.204704 CTGTGAGTGAGCGGGAATGTA 59.795 52.381 0.00 0.00 0.00 2.29
638 639 0.036952 CTGTGAGTGAGCGGGAATGT 60.037 55.000 0.00 0.00 0.00 2.71
639 640 1.364626 GCTGTGAGTGAGCGGGAATG 61.365 60.000 0.00 0.00 0.00 2.67
640 641 1.078848 GCTGTGAGTGAGCGGGAAT 60.079 57.895 0.00 0.00 0.00 3.01
641 642 2.159819 GAGCTGTGAGTGAGCGGGAA 62.160 60.000 0.00 0.00 41.61 3.97
642 643 2.601666 AGCTGTGAGTGAGCGGGA 60.602 61.111 0.00 0.00 41.61 5.14
643 644 2.125753 GAGCTGTGAGTGAGCGGG 60.126 66.667 0.00 0.00 41.61 6.13
644 645 1.735920 GTGAGCTGTGAGTGAGCGG 60.736 63.158 0.00 0.00 41.61 5.52
645 646 1.007848 CAGTGAGCTGTGAGTGAGCG 61.008 60.000 0.00 0.00 41.61 5.03
646 647 0.669932 CCAGTGAGCTGTGAGTGAGC 60.670 60.000 0.00 0.00 41.02 4.26
647 648 0.669932 GCCAGTGAGCTGTGAGTGAG 60.670 60.000 0.00 0.00 41.02 3.51
648 649 1.368950 GCCAGTGAGCTGTGAGTGA 59.631 57.895 0.00 0.00 41.02 3.41
649 650 1.670406 GGCCAGTGAGCTGTGAGTG 60.670 63.158 0.00 0.00 41.02 3.51
650 651 2.142761 TGGCCAGTGAGCTGTGAGT 61.143 57.895 0.00 0.00 41.02 3.41
651 652 1.670406 GTGGCCAGTGAGCTGTGAG 60.670 63.158 5.11 0.00 41.02 3.51
652 653 2.427320 GTGGCCAGTGAGCTGTGA 59.573 61.111 5.11 0.00 41.02 3.58
671 672 2.265904 CGGAGACTGTCGGTGTGGA 61.266 63.158 1.52 0.00 0.00 4.02
777 785 2.104170 GAGGAGGGAGTGAATCTCGTT 58.896 52.381 0.00 0.00 43.60 3.85
1024 1058 1.205417 GTGGGATTGGCTTGGATTGTG 59.795 52.381 0.00 0.00 0.00 3.33
1408 1525 7.574217 GCAACTAGATAGATACCACTACTCTGC 60.574 44.444 0.00 0.00 0.00 4.26
1410 1527 7.663905 CAGCAACTAGATAGATACCACTACTCT 59.336 40.741 0.00 0.00 0.00 3.24
1457 1579 2.546368 GACAAACACCAGCGACATACAA 59.454 45.455 0.00 0.00 0.00 2.41
1474 1605 0.249868 CACAAGACGGGAGCAGACAA 60.250 55.000 0.00 0.00 0.00 3.18
1543 1688 0.536006 GATGCAGAGGAATTCGGGGG 60.536 60.000 0.00 0.00 0.00 5.40
1547 1692 3.790091 TCAAGAGATGCAGAGGAATTCG 58.210 45.455 0.00 0.00 0.00 3.34
1551 1696 3.129462 CGTACTCAAGAGATGCAGAGGAA 59.871 47.826 3.73 0.00 32.52 3.36
1565 1710 5.527951 TGCAAAATACTGAAACCGTACTCAA 59.472 36.000 0.00 0.00 0.00 3.02
1568 1713 6.569179 ATTGCAAAATACTGAAACCGTACT 57.431 33.333 1.71 0.00 0.00 2.73
1570 1715 6.535811 CGTATTGCAAAATACTGAAACCGTA 58.464 36.000 1.71 0.00 34.36 4.02
1587 1751 0.317020 GAAATCGGCCAGCGTATTGC 60.317 55.000 2.24 0.00 46.98 3.56
1590 1754 0.107897 TGTGAAATCGGCCAGCGTAT 60.108 50.000 2.24 0.00 0.00 3.06
1592 1756 1.369091 GATGTGAAATCGGCCAGCGT 61.369 55.000 2.24 0.00 0.00 5.07
1600 1764 4.392921 AGAGTACAGGGATGTGAAATCG 57.607 45.455 0.00 0.00 0.00 3.34
1607 1771 7.121315 GCAGAAAATTTTAGAGTACAGGGATGT 59.879 37.037 2.75 0.00 0.00 3.06
1611 1775 5.125578 GGGCAGAAAATTTTAGAGTACAGGG 59.874 44.000 2.75 0.00 0.00 4.45
1615 1779 5.014202 TGGGGGCAGAAAATTTTAGAGTAC 58.986 41.667 2.75 0.00 0.00 2.73
1622 1786 3.326297 TCGATTTGGGGGCAGAAAATTTT 59.674 39.130 2.28 2.28 0.00 1.82
1643 1808 1.110518 TTTGGGGGCAAAACCGAGTC 61.111 55.000 0.00 0.00 40.62 3.36
1656 1821 3.258872 TGTTCAATGCAGAAGATTTGGGG 59.741 43.478 0.00 0.00 0.00 4.96
1657 1822 4.240096 GTGTTCAATGCAGAAGATTTGGG 58.760 43.478 0.00 0.00 0.00 4.12
1660 1825 5.048224 CAGAGGTGTTCAATGCAGAAGATTT 60.048 40.000 0.00 0.00 0.00 2.17
1661 1826 4.458295 CAGAGGTGTTCAATGCAGAAGATT 59.542 41.667 0.00 0.00 0.00 2.40
1674 1859 1.865865 TTCGCAGTTCAGAGGTGTTC 58.134 50.000 0.00 0.00 0.00 3.18
1679 1864 2.704572 AGGAATTTCGCAGTTCAGAGG 58.295 47.619 0.00 0.00 0.00 3.69
1695 1880 1.542547 GGGACAAACAGCTCGAAGGAA 60.543 52.381 0.00 0.00 0.00 3.36
1696 1881 0.034896 GGGACAAACAGCTCGAAGGA 59.965 55.000 0.00 0.00 0.00 3.36
1698 1883 1.001406 AGAGGGACAAACAGCTCGAAG 59.999 52.381 0.00 0.00 0.00 3.79
1701 1886 0.605589 AGAGAGGGACAAACAGCTCG 59.394 55.000 0.00 0.00 0.00 5.03
1711 1896 5.878406 TGGAGATTAATTCAGAGAGGGAC 57.122 43.478 0.00 0.00 0.00 4.46
1712 1897 6.388100 ACAATGGAGATTAATTCAGAGAGGGA 59.612 38.462 0.00 0.00 0.00 4.20
1713 1898 6.599445 ACAATGGAGATTAATTCAGAGAGGG 58.401 40.000 0.00 0.00 0.00 4.30
1714 1899 7.441760 CAGACAATGGAGATTAATTCAGAGAGG 59.558 40.741 0.00 0.00 0.00 3.69
1715 1900 7.986320 ACAGACAATGGAGATTAATTCAGAGAG 59.014 37.037 0.00 0.00 0.00 3.20
1726 1911 5.752036 TTCAGAGACAGACAATGGAGATT 57.248 39.130 0.00 0.00 0.00 2.40
1727 1912 5.954153 ATTCAGAGACAGACAATGGAGAT 57.046 39.130 0.00 0.00 0.00 2.75
1730 1966 7.000472 AGAAAAATTCAGAGACAGACAATGGA 59.000 34.615 0.00 0.00 0.00 3.41
1737 1973 4.212004 CGTGCAGAAAAATTCAGAGACAGA 59.788 41.667 0.00 0.00 0.00 3.41
1739 1975 3.303990 GCGTGCAGAAAAATTCAGAGACA 60.304 43.478 0.00 0.00 0.00 3.41
1752 1988 1.375908 GATGAGTGGGCGTGCAGAA 60.376 57.895 0.00 0.00 0.00 3.02
1753 1989 2.265739 GATGAGTGGGCGTGCAGA 59.734 61.111 0.00 0.00 0.00 4.26
1754 1990 2.821366 GGATGAGTGGGCGTGCAG 60.821 66.667 0.00 0.00 0.00 4.41
1769 2046 2.279741 CGGATTTTGAATCAGCTCGGA 58.720 47.619 3.39 0.00 0.00 4.55
1878 2180 1.834263 TGGAAACAGGTTTTGGGTTGG 59.166 47.619 0.00 0.00 35.01 3.77
1932 2234 2.500183 GAAGCAGGCAACGAGAACGC 62.500 60.000 0.00 0.00 43.96 4.84
1933 2235 1.493311 GAAGCAGGCAACGAGAACG 59.507 57.895 0.00 0.00 46.39 3.95
1940 2242 0.384353 GAACGAACGAAGCAGGCAAC 60.384 55.000 0.14 0.00 0.00 4.17
1946 2248 2.591311 GGCGTGAACGAACGAAGCA 61.591 57.895 7.10 0.00 46.49 3.91
1947 2249 2.170273 GGCGTGAACGAACGAAGC 59.830 61.111 7.10 0.56 46.49 3.86
1970 2274 5.132502 TCCAATCTGTTTCAAAGCAAGAGA 58.867 37.500 0.00 0.00 0.00 3.10
2068 2373 2.190578 CGATCCCAACTCCAGGGC 59.809 66.667 0.00 0.00 46.36 5.19
2136 2441 2.822764 GGTAAAGCAGATCTGTACCGG 58.177 52.381 23.38 0.00 43.77 5.28
2178 2483 1.456296 GCTGTGGCTGATCATGACAA 58.544 50.000 0.00 0.00 35.22 3.18
2227 2535 3.511182 TGCATCCAAATTGCAACCG 57.489 47.368 0.00 0.00 46.48 4.44
2529 2865 0.252558 ATGGGTCGGGTTACTCAGGT 60.253 55.000 0.00 0.00 32.16 4.00
2530 2866 1.784358 TATGGGTCGGGTTACTCAGG 58.216 55.000 0.00 0.00 32.16 3.86
2531 2867 4.417426 AAATATGGGTCGGGTTACTCAG 57.583 45.455 0.00 0.00 32.16 3.35
2532 2868 4.847990 AAAATATGGGTCGGGTTACTCA 57.152 40.909 0.00 0.00 33.48 3.41
2668 3012 2.301346 CAGACCCCATCAACCTAATGC 58.699 52.381 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.