Multiple sequence alignment - TraesCS5A01G353200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G353200 chr5A 100.000 4308 0 0 1 4308 555769714 555774021 0.000000e+00 7956
1 TraesCS5A01G353200 chr5A 93.367 3739 189 34 605 4308 30404114 30407828 0.000000e+00 5476
2 TraesCS5A01G353200 chr5D 96.533 3721 107 14 605 4308 440159966 440163681 0.000000e+00 6137
3 TraesCS5A01G353200 chr5D 94.247 3511 146 28 817 4308 42016662 42020135 0.000000e+00 5313
4 TraesCS5A01G353200 chr5D 90.074 1884 102 27 607 2452 42053754 42051918 0.000000e+00 2364
5 TraesCS5A01G353200 chr5B 96.373 3722 104 20 605 4308 535110884 535114592 0.000000e+00 6096
6 TraesCS5A01G353200 chr5B 94.126 3507 143 21 817 4308 36720307 36723765 0.000000e+00 5276
7 TraesCS5A01G353200 chr5B 93.022 2379 119 18 826 3202 36767815 36765482 0.000000e+00 3430
8 TraesCS5A01G353200 chr5B 95.946 148 5 1 3780 3927 36765233 36765087 5.570000e-59 239
9 TraesCS5A01G353200 chr5B 96.154 130 5 0 3953 4082 36765090 36764961 3.370000e-51 213
10 TraesCS5A01G353200 chr6B 94.247 591 32 2 1 589 542665749 542665159 0.000000e+00 902


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G353200 chr5A 555769714 555774021 4307 False 7956 7956 100.000000 1 4308 1 chr5A.!!$F2 4307
1 TraesCS5A01G353200 chr5A 30404114 30407828 3714 False 5476 5476 93.367000 605 4308 1 chr5A.!!$F1 3703
2 TraesCS5A01G353200 chr5D 440159966 440163681 3715 False 6137 6137 96.533000 605 4308 1 chr5D.!!$F2 3703
3 TraesCS5A01G353200 chr5D 42016662 42020135 3473 False 5313 5313 94.247000 817 4308 1 chr5D.!!$F1 3491
4 TraesCS5A01G353200 chr5D 42051918 42053754 1836 True 2364 2364 90.074000 607 2452 1 chr5D.!!$R1 1845
5 TraesCS5A01G353200 chr5B 535110884 535114592 3708 False 6096 6096 96.373000 605 4308 1 chr5B.!!$F2 3703
6 TraesCS5A01G353200 chr5B 36720307 36723765 3458 False 5276 5276 94.126000 817 4308 1 chr5B.!!$F1 3491
7 TraesCS5A01G353200 chr5B 36764961 36767815 2854 True 1294 3430 95.040667 826 4082 3 chr5B.!!$R1 3256
8 TraesCS5A01G353200 chr6B 542665159 542665749 590 True 902 902 94.247000 1 589 1 chr6B.!!$R1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 569 0.103208 CGCAAGACCTAGATCGCCTT 59.897 55.000 0.00 0.0 43.02 4.35 F
603 604 0.179084 CCACATACCGGTTCGCTGAT 60.179 55.000 15.04 0.0 0.00 2.90 F
709 711 0.326595 TAAGCATTTGGAGGCCGTCA 59.673 50.000 0.00 0.0 31.67 4.35 F
1868 1916 0.914644 TTGCTTGGGAGGATGAGGAG 59.085 55.000 0.00 0.0 0.00 3.69 F
2032 2080 0.940126 AGTTGTGCACTCTTTCTGCG 59.060 50.000 19.41 0.0 37.46 5.18 F
2995 3047 1.000163 GAGGTCTCGCAGTTCAGTCAA 60.000 52.381 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2430 0.388907 CCTTTTGCAACATCTGGGCG 60.389 55.000 0.00 0.0 0.00 6.13 R
2466 2514 0.772124 TGAAGTCTTTGGCCTCCCCT 60.772 55.000 3.32 0.0 0.00 4.79 R
2580 2628 4.526970 ACAAGTCATCCAACAAAGACAGT 58.473 39.130 0.00 0.0 33.56 3.55 R
2995 3047 0.895100 ATCTGGCACGCCACATTGTT 60.895 50.000 6.67 0.0 41.89 2.83 R
3053 3105 4.646492 AGGTCAGCTGATTGTCAACTTTTT 59.354 37.500 21.47 0.0 0.00 1.94 R
4184 4360 1.003355 AGCAAGCACCATGTACGCT 60.003 52.632 0.00 0.0 37.68 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.031420 CAGTAAGTCACGAACTGTCCGA 60.031 50.000 0.00 0.00 38.58 4.55
97 98 1.681166 GCTACCGACAGTACTCCTCCA 60.681 57.143 0.00 0.00 0.00 3.86
98 99 2.719739 CTACCGACAGTACTCCTCCAA 58.280 52.381 0.00 0.00 0.00 3.53
99 100 2.005370 ACCGACAGTACTCCTCCAAA 57.995 50.000 0.00 0.00 0.00 3.28
106 107 0.175989 GTACTCCTCCAAAGAGCCCG 59.824 60.000 0.00 0.00 38.96 6.13
107 108 0.252103 TACTCCTCCAAAGAGCCCGT 60.252 55.000 0.00 0.00 38.96 5.28
122 123 2.563179 AGCCCGTCGATATGCTAAGATT 59.437 45.455 4.02 0.00 30.97 2.40
126 127 4.386049 CCCGTCGATATGCTAAGATTGTTC 59.614 45.833 0.00 0.00 0.00 3.18
137 138 6.533730 TGCTAAGATTGTTCTTCTCCTCAAA 58.466 36.000 0.00 0.00 41.36 2.69
173 174 1.329906 CTTGCTATCTTGGCTGCTTCG 59.670 52.381 0.00 0.00 0.00 3.79
192 193 4.047834 CGCAGCACACCTTCTTGA 57.952 55.556 0.00 0.00 0.00 3.02
193 194 2.320215 CGCAGCACACCTTCTTGAA 58.680 52.632 0.00 0.00 0.00 2.69
194 195 0.662619 CGCAGCACACCTTCTTGAAA 59.337 50.000 0.00 0.00 0.00 2.69
195 196 1.597937 CGCAGCACACCTTCTTGAAAC 60.598 52.381 0.00 0.00 0.00 2.78
196 197 1.405105 GCAGCACACCTTCTTGAAACA 59.595 47.619 0.00 0.00 0.00 2.83
197 198 2.159254 GCAGCACACCTTCTTGAAACAA 60.159 45.455 0.00 0.00 0.00 2.83
198 199 3.491447 GCAGCACACCTTCTTGAAACAAT 60.491 43.478 0.00 0.00 0.00 2.71
199 200 4.293415 CAGCACACCTTCTTGAAACAATC 58.707 43.478 0.00 0.00 0.00 2.67
200 201 3.319122 AGCACACCTTCTTGAAACAATCC 59.681 43.478 0.00 0.00 0.00 3.01
201 202 3.552890 GCACACCTTCTTGAAACAATCCC 60.553 47.826 0.00 0.00 0.00 3.85
202 203 3.636300 CACACCTTCTTGAAACAATCCCA 59.364 43.478 0.00 0.00 0.00 4.37
203 204 4.099266 CACACCTTCTTGAAACAATCCCAA 59.901 41.667 0.00 0.00 0.00 4.12
204 205 4.714308 ACACCTTCTTGAAACAATCCCAAA 59.286 37.500 0.00 0.00 0.00 3.28
205 206 5.188751 ACACCTTCTTGAAACAATCCCAAAA 59.811 36.000 0.00 0.00 0.00 2.44
206 207 5.523552 CACCTTCTTGAAACAATCCCAAAAC 59.476 40.000 0.00 0.00 0.00 2.43
207 208 5.188751 ACCTTCTTGAAACAATCCCAAAACA 59.811 36.000 0.00 0.00 0.00 2.83
208 209 6.112058 CCTTCTTGAAACAATCCCAAAACAA 58.888 36.000 0.00 0.00 0.00 2.83
209 210 6.597280 CCTTCTTGAAACAATCCCAAAACAAA 59.403 34.615 0.00 0.00 0.00 2.83
210 211 7.120432 CCTTCTTGAAACAATCCCAAAACAAAA 59.880 33.333 0.00 0.00 0.00 2.44
211 212 7.371126 TCTTGAAACAATCCCAAAACAAAAC 57.629 32.000 0.00 0.00 0.00 2.43
212 213 6.372937 TCTTGAAACAATCCCAAAACAAAACC 59.627 34.615 0.00 0.00 0.00 3.27
213 214 5.560724 TGAAACAATCCCAAAACAAAACCA 58.439 33.333 0.00 0.00 0.00 3.67
214 215 6.003950 TGAAACAATCCCAAAACAAAACCAA 58.996 32.000 0.00 0.00 0.00 3.67
215 216 6.490040 TGAAACAATCCCAAAACAAAACCAAA 59.510 30.769 0.00 0.00 0.00 3.28
216 217 7.177392 TGAAACAATCCCAAAACAAAACCAAAT 59.823 29.630 0.00 0.00 0.00 2.32
217 218 6.691754 ACAATCCCAAAACAAAACCAAATC 57.308 33.333 0.00 0.00 0.00 2.17
218 219 6.422333 ACAATCCCAAAACAAAACCAAATCT 58.578 32.000 0.00 0.00 0.00 2.40
219 220 6.542005 ACAATCCCAAAACAAAACCAAATCTC 59.458 34.615 0.00 0.00 0.00 2.75
220 221 5.948742 TCCCAAAACAAAACCAAATCTCT 57.051 34.783 0.00 0.00 0.00 3.10
221 222 5.669477 TCCCAAAACAAAACCAAATCTCTG 58.331 37.500 0.00 0.00 0.00 3.35
222 223 5.188751 TCCCAAAACAAAACCAAATCTCTGT 59.811 36.000 0.00 0.00 0.00 3.41
223 224 5.523552 CCCAAAACAAAACCAAATCTCTGTC 59.476 40.000 0.00 0.00 0.00 3.51
224 225 5.523552 CCAAAACAAAACCAAATCTCTGTCC 59.476 40.000 0.00 0.00 0.00 4.02
225 226 5.930837 AAACAAAACCAAATCTCTGTCCA 57.069 34.783 0.00 0.00 0.00 4.02
226 227 5.520376 AACAAAACCAAATCTCTGTCCAG 57.480 39.130 0.00 0.00 0.00 3.86
227 228 3.891366 ACAAAACCAAATCTCTGTCCAGG 59.109 43.478 0.00 0.00 0.00 4.45
228 229 2.206576 AACCAAATCTCTGTCCAGGC 57.793 50.000 0.00 0.00 0.00 4.85
229 230 1.366319 ACCAAATCTCTGTCCAGGCT 58.634 50.000 0.00 0.00 0.00 4.58
230 231 1.004044 ACCAAATCTCTGTCCAGGCTG 59.996 52.381 7.75 7.75 0.00 4.85
231 232 1.004044 CCAAATCTCTGTCCAGGCTGT 59.996 52.381 14.43 0.00 0.00 4.40
232 233 2.354259 CAAATCTCTGTCCAGGCTGTC 58.646 52.381 14.43 6.86 0.00 3.51
233 234 0.908198 AATCTCTGTCCAGGCTGTCC 59.092 55.000 14.43 3.67 0.00 4.02
234 235 1.326213 ATCTCTGTCCAGGCTGTCCG 61.326 60.000 14.43 3.14 37.47 4.79
235 236 2.997315 TCTGTCCAGGCTGTCCGG 60.997 66.667 14.43 8.35 37.47 5.14
236 237 2.997315 CTGTCCAGGCTGTCCGGA 60.997 66.667 14.43 0.00 37.47 5.14
237 238 2.284625 TGTCCAGGCTGTCCGGAT 60.285 61.111 7.81 0.00 37.38 4.18
238 239 2.303549 CTGTCCAGGCTGTCCGGATC 62.304 65.000 7.81 1.69 37.38 3.36
239 240 2.038813 TCCAGGCTGTCCGGATCA 59.961 61.111 7.81 7.01 37.47 2.92
240 241 2.060383 TCCAGGCTGTCCGGATCAG 61.060 63.158 22.32 22.32 37.47 2.90
245 246 4.147449 CTGTCCGGATCAGCGGCA 62.147 66.667 7.81 0.00 0.00 5.69
246 247 4.451150 TGTCCGGATCAGCGGCAC 62.451 66.667 7.81 5.99 0.00 5.01
251 252 4.783621 GGATCAGCGGCACCTGCA 62.784 66.667 1.45 0.00 44.36 4.41
252 253 3.503363 GATCAGCGGCACCTGCAC 61.503 66.667 1.45 0.00 44.36 4.57
258 259 2.569657 CGGCACCTGCACGTACTA 59.430 61.111 0.00 0.00 44.36 1.82
259 260 1.080366 CGGCACCTGCACGTACTAA 60.080 57.895 0.00 0.00 44.36 2.24
260 261 1.349259 CGGCACCTGCACGTACTAAC 61.349 60.000 0.00 0.00 44.36 2.34
261 262 1.017701 GGCACCTGCACGTACTAACC 61.018 60.000 0.00 0.00 44.36 2.85
262 263 0.320073 GCACCTGCACGTACTAACCA 60.320 55.000 0.00 0.00 41.59 3.67
263 264 1.674817 GCACCTGCACGTACTAACCAT 60.675 52.381 0.00 0.00 41.59 3.55
264 265 2.417651 GCACCTGCACGTACTAACCATA 60.418 50.000 0.00 0.00 41.59 2.74
265 266 3.184541 CACCTGCACGTACTAACCATAC 58.815 50.000 0.00 0.00 0.00 2.39
266 267 2.827322 ACCTGCACGTACTAACCATACA 59.173 45.455 0.00 0.00 0.00 2.29
267 268 3.258872 ACCTGCACGTACTAACCATACAA 59.741 43.478 0.00 0.00 0.00 2.41
268 269 4.081309 ACCTGCACGTACTAACCATACAAT 60.081 41.667 0.00 0.00 0.00 2.71
269 270 4.506654 CCTGCACGTACTAACCATACAATC 59.493 45.833 0.00 0.00 0.00 2.67
270 271 5.074584 TGCACGTACTAACCATACAATCA 57.925 39.130 0.00 0.00 0.00 2.57
271 272 4.865925 TGCACGTACTAACCATACAATCAC 59.134 41.667 0.00 0.00 0.00 3.06
272 273 4.865925 GCACGTACTAACCATACAATCACA 59.134 41.667 0.00 0.00 0.00 3.58
273 274 5.349270 GCACGTACTAACCATACAATCACAA 59.651 40.000 0.00 0.00 0.00 3.33
274 275 6.455113 GCACGTACTAACCATACAATCACAAG 60.455 42.308 0.00 0.00 0.00 3.16
275 276 5.579511 ACGTACTAACCATACAATCACAAGC 59.420 40.000 0.00 0.00 0.00 4.01
276 277 5.579119 CGTACTAACCATACAATCACAAGCA 59.421 40.000 0.00 0.00 0.00 3.91
277 278 6.237835 CGTACTAACCATACAATCACAAGCAG 60.238 42.308 0.00 0.00 0.00 4.24
278 279 3.855689 AACCATACAATCACAAGCAGC 57.144 42.857 0.00 0.00 0.00 5.25
279 280 2.094675 ACCATACAATCACAAGCAGCC 58.905 47.619 0.00 0.00 0.00 4.85
280 281 2.093890 CCATACAATCACAAGCAGCCA 58.906 47.619 0.00 0.00 0.00 4.75
281 282 2.159338 CCATACAATCACAAGCAGCCAC 60.159 50.000 0.00 0.00 0.00 5.01
282 283 2.566833 TACAATCACAAGCAGCCACT 57.433 45.000 0.00 0.00 0.00 4.00
283 284 1.242076 ACAATCACAAGCAGCCACTC 58.758 50.000 0.00 0.00 0.00 3.51
284 285 0.524862 CAATCACAAGCAGCCACTCC 59.475 55.000 0.00 0.00 0.00 3.85
285 286 0.111061 AATCACAAGCAGCCACTCCA 59.889 50.000 0.00 0.00 0.00 3.86
286 287 0.322277 ATCACAAGCAGCCACTCCAG 60.322 55.000 0.00 0.00 0.00 3.86
287 288 2.282040 ACAAGCAGCCACTCCAGC 60.282 61.111 0.00 0.00 0.00 4.85
288 289 2.281970 CAAGCAGCCACTCCAGCA 60.282 61.111 0.00 0.00 0.00 4.41
289 290 2.033757 AAGCAGCCACTCCAGCAG 59.966 61.111 0.00 0.00 0.00 4.24
290 291 3.564345 AAGCAGCCACTCCAGCAGG 62.564 63.158 0.00 0.00 0.00 4.85
291 292 4.025858 GCAGCCACTCCAGCAGGA 62.026 66.667 0.00 0.00 43.21 3.86
292 293 2.046507 CAGCCACTCCAGCAGGAC 60.047 66.667 0.00 0.00 39.61 3.85
293 294 2.527624 AGCCACTCCAGCAGGACA 60.528 61.111 0.00 0.00 39.61 4.02
294 295 2.149383 AGCCACTCCAGCAGGACAA 61.149 57.895 0.00 0.00 39.61 3.18
295 296 1.968540 GCCACTCCAGCAGGACAAC 60.969 63.158 0.00 0.00 39.61 3.32
296 297 1.451504 CCACTCCAGCAGGACAACA 59.548 57.895 0.00 0.00 39.61 3.33
297 298 0.886490 CCACTCCAGCAGGACAACAC 60.886 60.000 0.00 0.00 39.61 3.32
298 299 0.179048 CACTCCAGCAGGACAACACA 60.179 55.000 0.00 0.00 39.61 3.72
299 300 0.546122 ACTCCAGCAGGACAACACAA 59.454 50.000 0.00 0.00 39.61 3.33
300 301 0.947244 CTCCAGCAGGACAACACAAC 59.053 55.000 0.00 0.00 39.61 3.32
301 302 0.254462 TCCAGCAGGACAACACAACA 59.746 50.000 0.00 0.00 39.61 3.33
302 303 1.102154 CCAGCAGGACAACACAACAA 58.898 50.000 0.00 0.00 36.89 2.83
303 304 1.202290 CCAGCAGGACAACACAACAAC 60.202 52.381 0.00 0.00 36.89 3.32
304 305 0.732571 AGCAGGACAACACAACAACG 59.267 50.000 0.00 0.00 0.00 4.10
305 306 0.865639 GCAGGACAACACAACAACGC 60.866 55.000 0.00 0.00 0.00 4.84
306 307 0.449786 CAGGACAACACAACAACGCA 59.550 50.000 0.00 0.00 0.00 5.24
307 308 1.135546 CAGGACAACACAACAACGCAA 60.136 47.619 0.00 0.00 0.00 4.85
308 309 1.542030 AGGACAACACAACAACGCAAA 59.458 42.857 0.00 0.00 0.00 3.68
309 310 1.917303 GGACAACACAACAACGCAAAG 59.083 47.619 0.00 0.00 0.00 2.77
310 311 2.414824 GGACAACACAACAACGCAAAGA 60.415 45.455 0.00 0.00 0.00 2.52
311 312 2.591133 ACAACACAACAACGCAAAGAC 58.409 42.857 0.00 0.00 0.00 3.01
312 313 2.227865 ACAACACAACAACGCAAAGACT 59.772 40.909 0.00 0.00 0.00 3.24
313 314 2.825086 ACACAACAACGCAAAGACTC 57.175 45.000 0.00 0.00 0.00 3.36
314 315 2.356135 ACACAACAACGCAAAGACTCT 58.644 42.857 0.00 0.00 0.00 3.24
315 316 2.095853 ACACAACAACGCAAAGACTCTG 59.904 45.455 0.00 0.00 0.00 3.35
316 317 2.351418 CACAACAACGCAAAGACTCTGA 59.649 45.455 0.00 0.00 0.00 3.27
317 318 3.002656 CACAACAACGCAAAGACTCTGAT 59.997 43.478 0.00 0.00 0.00 2.90
318 319 3.002656 ACAACAACGCAAAGACTCTGATG 59.997 43.478 0.00 0.00 0.00 3.07
319 320 2.146342 ACAACGCAAAGACTCTGATGG 58.854 47.619 0.00 0.00 0.00 3.51
320 321 2.146342 CAACGCAAAGACTCTGATGGT 58.854 47.619 0.00 0.00 0.00 3.55
321 322 2.086054 ACGCAAAGACTCTGATGGTC 57.914 50.000 0.00 0.00 0.00 4.02
322 323 1.338200 ACGCAAAGACTCTGATGGTCC 60.338 52.381 0.00 0.00 34.56 4.46
323 324 1.363744 GCAAAGACTCTGATGGTCCG 58.636 55.000 0.00 0.00 34.56 4.79
324 325 1.363744 CAAAGACTCTGATGGTCCGC 58.636 55.000 0.00 0.00 34.56 5.54
325 326 0.108615 AAAGACTCTGATGGTCCGCG 60.109 55.000 0.00 0.00 34.56 6.46
326 327 1.251527 AAGACTCTGATGGTCCGCGT 61.252 55.000 4.92 0.00 34.56 6.01
327 328 0.393944 AGACTCTGATGGTCCGCGTA 60.394 55.000 4.92 0.00 34.56 4.42
328 329 0.248539 GACTCTGATGGTCCGCGTAC 60.249 60.000 4.92 0.00 0.00 3.67
329 330 0.680280 ACTCTGATGGTCCGCGTACT 60.680 55.000 4.92 0.00 0.00 2.73
330 331 0.248661 CTCTGATGGTCCGCGTACTG 60.249 60.000 4.92 0.00 0.00 2.74
331 332 1.226974 CTGATGGTCCGCGTACTGG 60.227 63.158 4.92 0.00 0.00 4.00
332 333 1.663379 CTGATGGTCCGCGTACTGGA 61.663 60.000 4.92 0.00 0.00 3.86
333 334 1.252215 TGATGGTCCGCGTACTGGAA 61.252 55.000 4.92 0.00 37.23 3.53
334 335 0.108520 GATGGTCCGCGTACTGGAAA 60.109 55.000 4.92 0.00 37.23 3.13
335 336 0.322322 ATGGTCCGCGTACTGGAAAA 59.678 50.000 4.92 0.00 37.23 2.29
336 337 0.106335 TGGTCCGCGTACTGGAAAAA 59.894 50.000 4.92 0.00 37.23 1.94
355 356 3.662247 AAACACTAGACGACCTGAAGG 57.338 47.619 0.00 0.00 42.17 3.46
356 357 2.581216 ACACTAGACGACCTGAAGGA 57.419 50.000 2.62 0.00 38.94 3.36
357 358 2.438411 ACACTAGACGACCTGAAGGAG 58.562 52.381 2.62 0.00 38.94 3.69
358 359 1.133407 CACTAGACGACCTGAAGGAGC 59.867 57.143 2.62 0.00 38.94 4.70
359 360 0.741915 CTAGACGACCTGAAGGAGCC 59.258 60.000 2.62 0.00 38.94 4.70
360 361 1.030488 TAGACGACCTGAAGGAGCCG 61.030 60.000 2.62 6.24 38.94 5.52
361 362 3.358076 GACGACCTGAAGGAGCCGG 62.358 68.421 2.62 0.00 38.94 6.13
362 363 4.821589 CGACCTGAAGGAGCCGGC 62.822 72.222 21.89 21.89 38.94 6.13
363 364 3.394836 GACCTGAAGGAGCCGGCT 61.395 66.667 33.48 33.48 38.94 5.52
364 365 2.038975 ACCTGAAGGAGCCGGCTA 59.961 61.111 32.97 13.15 38.94 3.93
365 366 2.022240 GACCTGAAGGAGCCGGCTAG 62.022 65.000 32.97 22.71 38.94 3.42
366 367 2.801631 CCTGAAGGAGCCGGCTAGG 61.802 68.421 32.97 27.85 39.60 3.02
367 368 1.758514 CTGAAGGAGCCGGCTAGGA 60.759 63.158 32.97 10.98 45.00 2.94
368 369 1.305802 TGAAGGAGCCGGCTAGGAA 60.306 57.895 32.97 11.87 45.00 3.36
369 370 0.907704 TGAAGGAGCCGGCTAGGAAA 60.908 55.000 32.97 13.11 45.00 3.13
370 371 0.470341 GAAGGAGCCGGCTAGGAAAT 59.530 55.000 32.97 12.84 45.00 2.17
371 372 0.470341 AAGGAGCCGGCTAGGAAATC 59.530 55.000 32.97 15.61 45.00 2.17
372 373 1.301009 GGAGCCGGCTAGGAAATCG 60.301 63.158 32.97 0.00 45.00 3.34
373 374 1.740285 GAGCCGGCTAGGAAATCGA 59.260 57.895 32.97 0.00 45.00 3.59
374 375 0.318762 GAGCCGGCTAGGAAATCGAT 59.681 55.000 32.97 1.35 45.00 3.59
375 376 1.544691 GAGCCGGCTAGGAAATCGATA 59.455 52.381 32.97 0.00 45.00 2.92
376 377 1.968493 AGCCGGCTAGGAAATCGATAA 59.032 47.619 31.86 0.00 45.00 1.75
377 378 2.367567 AGCCGGCTAGGAAATCGATAAA 59.632 45.455 31.86 0.00 45.00 1.40
378 379 3.135994 GCCGGCTAGGAAATCGATAAAA 58.864 45.455 22.15 0.00 45.00 1.52
379 380 3.059120 GCCGGCTAGGAAATCGATAAAAC 60.059 47.826 22.15 0.00 45.00 2.43
380 381 3.183775 CCGGCTAGGAAATCGATAAAACG 59.816 47.826 0.00 0.00 45.00 3.60
381 382 3.800506 CGGCTAGGAAATCGATAAAACGT 59.199 43.478 0.00 0.00 34.70 3.99
382 383 4.085210 CGGCTAGGAAATCGATAAAACGTC 60.085 45.833 0.00 0.00 34.70 4.34
383 384 4.210746 GGCTAGGAAATCGATAAAACGTCC 59.789 45.833 0.00 0.00 34.70 4.79
384 385 4.807304 GCTAGGAAATCGATAAAACGTCCA 59.193 41.667 0.00 0.00 31.45 4.02
385 386 5.050972 GCTAGGAAATCGATAAAACGTCCAG 60.051 44.000 0.00 2.09 31.45 3.86
386 387 4.189231 AGGAAATCGATAAAACGTCCAGG 58.811 43.478 0.00 0.00 31.45 4.45
387 388 3.242641 GGAAATCGATAAAACGTCCAGGC 60.243 47.826 0.00 0.00 34.70 4.85
388 389 2.684001 ATCGATAAAACGTCCAGGCA 57.316 45.000 0.00 0.00 34.70 4.75
389 390 2.684001 TCGATAAAACGTCCAGGCAT 57.316 45.000 0.00 0.00 34.70 4.40
390 391 2.276201 TCGATAAAACGTCCAGGCATG 58.724 47.619 0.00 0.00 34.70 4.06
391 392 2.093921 TCGATAAAACGTCCAGGCATGA 60.094 45.455 0.00 0.00 34.70 3.07
392 393 2.675844 CGATAAAACGTCCAGGCATGAA 59.324 45.455 0.00 0.00 0.00 2.57
393 394 3.242413 CGATAAAACGTCCAGGCATGAAG 60.242 47.826 0.00 0.00 0.00 3.02
394 395 0.598065 AAAACGTCCAGGCATGAAGC 59.402 50.000 0.00 0.00 44.65 3.86
395 396 0.250901 AAACGTCCAGGCATGAAGCT 60.251 50.000 0.00 0.00 44.79 3.74
396 397 0.957395 AACGTCCAGGCATGAAGCTG 60.957 55.000 0.00 0.00 44.79 4.24
397 398 2.758089 CGTCCAGGCATGAAGCTGC 61.758 63.158 0.00 0.00 44.79 5.25
398 399 2.437180 TCCAGGCATGAAGCTGCG 60.437 61.111 0.00 0.00 43.23 5.18
399 400 2.749044 CCAGGCATGAAGCTGCGT 60.749 61.111 0.00 0.00 43.23 5.24
400 401 2.338015 CCAGGCATGAAGCTGCGTT 61.338 57.895 0.00 0.00 43.23 4.84
401 402 1.136147 CAGGCATGAAGCTGCGTTC 59.864 57.895 0.00 0.00 43.23 3.95
402 403 1.302752 AGGCATGAAGCTGCGTTCA 60.303 52.632 13.97 13.97 43.23 3.18
403 404 0.679002 AGGCATGAAGCTGCGTTCAT 60.679 50.000 16.38 16.38 46.09 2.57
406 407 3.556817 ATGAAGCTGCGTTCATGGA 57.443 47.368 19.42 0.00 43.97 3.41
407 408 1.089920 ATGAAGCTGCGTTCATGGAC 58.910 50.000 19.42 0.00 43.97 4.02
408 409 1.291184 TGAAGCTGCGTTCATGGACG 61.291 55.000 22.53 22.53 45.40 4.79
409 410 1.970917 GAAGCTGCGTTCATGGACGG 61.971 60.000 27.18 13.11 42.98 4.79
410 411 3.499737 GCTGCGTTCATGGACGGG 61.500 66.667 27.18 1.40 42.98 5.28
411 412 2.264480 CTGCGTTCATGGACGGGA 59.736 61.111 27.18 9.09 42.98 5.14
412 413 2.047655 TGCGTTCATGGACGGGAC 60.048 61.111 27.18 11.82 42.98 4.46
425 426 3.579685 GGGACGGAGAAAAGCAGC 58.420 61.111 0.00 0.00 0.00 5.25
426 427 1.003233 GGGACGGAGAAAAGCAGCT 60.003 57.895 0.00 0.00 0.00 4.24
427 428 1.301677 GGGACGGAGAAAAGCAGCTG 61.302 60.000 10.11 10.11 0.00 4.24
428 429 0.320771 GGACGGAGAAAAGCAGCTGA 60.321 55.000 20.43 0.00 0.00 4.26
429 430 1.677217 GGACGGAGAAAAGCAGCTGAT 60.677 52.381 20.43 8.90 0.00 2.90
430 431 2.079925 GACGGAGAAAAGCAGCTGATT 58.920 47.619 20.43 16.35 0.00 2.57
431 432 2.485814 GACGGAGAAAAGCAGCTGATTT 59.514 45.455 23.65 23.65 34.83 2.17
432 433 2.227388 ACGGAGAAAAGCAGCTGATTTG 59.773 45.455 28.99 18.41 33.52 2.32
433 434 2.485426 CGGAGAAAAGCAGCTGATTTGA 59.515 45.455 28.99 0.00 33.52 2.69
434 435 3.128242 CGGAGAAAAGCAGCTGATTTGAT 59.872 43.478 28.99 20.33 33.52 2.57
435 436 4.421948 GGAGAAAAGCAGCTGATTTGATG 58.578 43.478 28.99 0.00 33.52 3.07
436 437 4.157289 GGAGAAAAGCAGCTGATTTGATGA 59.843 41.667 28.99 0.00 33.52 2.92
437 438 5.336213 GGAGAAAAGCAGCTGATTTGATGAA 60.336 40.000 28.99 0.00 33.52 2.57
438 439 5.710984 AGAAAAGCAGCTGATTTGATGAAG 58.289 37.500 28.99 0.00 33.52 3.02
439 440 3.505464 AAGCAGCTGATTTGATGAAGC 57.495 42.857 20.43 0.00 35.86 3.86
440 441 2.443416 AGCAGCTGATTTGATGAAGCA 58.557 42.857 20.43 0.00 38.14 3.91
441 442 2.823747 AGCAGCTGATTTGATGAAGCAA 59.176 40.909 20.43 0.00 38.14 3.91
442 443 3.257375 AGCAGCTGATTTGATGAAGCAAA 59.743 39.130 20.43 0.00 41.49 3.68
444 445 4.630069 GCAGCTGATTTGATGAAGCAAATT 59.370 37.500 20.43 0.00 45.63 1.82
445 446 5.445939 GCAGCTGATTTGATGAAGCAAATTG 60.446 40.000 20.43 4.11 45.63 2.32
446 447 5.063438 CAGCTGATTTGATGAAGCAAATTGG 59.937 40.000 8.42 5.69 45.63 3.16
447 448 4.201783 GCTGATTTGATGAAGCAAATTGGC 60.202 41.667 7.85 10.69 45.63 4.52
448 449 5.155278 TGATTTGATGAAGCAAATTGGCT 57.845 34.783 0.00 0.00 45.63 4.75
449 450 4.932799 TGATTTGATGAAGCAAATTGGCTG 59.067 37.500 8.45 0.00 45.63 4.85
450 451 3.322211 TTGATGAAGCAAATTGGCTGG 57.678 42.857 8.45 0.00 45.07 4.85
451 452 2.527497 TGATGAAGCAAATTGGCTGGA 58.473 42.857 8.45 0.00 45.07 3.86
452 453 2.494471 TGATGAAGCAAATTGGCTGGAG 59.506 45.455 8.45 0.00 45.07 3.86
453 454 2.291209 TGAAGCAAATTGGCTGGAGA 57.709 45.000 8.45 0.00 45.07 3.71
454 455 2.811410 TGAAGCAAATTGGCTGGAGAT 58.189 42.857 8.45 0.00 45.07 2.75
455 456 2.494471 TGAAGCAAATTGGCTGGAGATG 59.506 45.455 8.45 0.00 45.07 2.90
456 457 2.519771 AGCAAATTGGCTGGAGATGA 57.480 45.000 6.51 0.00 43.89 2.92
457 458 3.028094 AGCAAATTGGCTGGAGATGAT 57.972 42.857 6.51 0.00 43.89 2.45
458 459 3.371965 AGCAAATTGGCTGGAGATGATT 58.628 40.909 6.51 0.00 43.89 2.57
459 460 4.539726 AGCAAATTGGCTGGAGATGATTA 58.460 39.130 6.51 0.00 43.89 1.75
460 461 4.340381 AGCAAATTGGCTGGAGATGATTAC 59.660 41.667 6.51 0.00 43.89 1.89
461 462 4.790766 GCAAATTGGCTGGAGATGATTACG 60.791 45.833 0.00 0.00 0.00 3.18
462 463 4.422073 AATTGGCTGGAGATGATTACGA 57.578 40.909 0.00 0.00 0.00 3.43
463 464 4.630644 ATTGGCTGGAGATGATTACGAT 57.369 40.909 0.00 0.00 0.00 3.73
464 465 3.667497 TGGCTGGAGATGATTACGATC 57.333 47.619 0.00 0.00 0.00 3.69
465 466 2.029918 TGGCTGGAGATGATTACGATCG 60.030 50.000 14.88 14.88 34.91 3.69
466 467 1.989165 GCTGGAGATGATTACGATCGC 59.011 52.381 16.60 0.00 34.91 4.58
467 468 2.600731 CTGGAGATGATTACGATCGCC 58.399 52.381 16.60 5.31 39.53 5.54
468 469 1.272490 TGGAGATGATTACGATCGCCC 59.728 52.381 16.60 2.30 38.62 6.13
469 470 1.546476 GGAGATGATTACGATCGCCCT 59.454 52.381 16.60 0.00 34.61 5.19
470 471 2.753452 GGAGATGATTACGATCGCCCTA 59.247 50.000 16.60 0.00 34.61 3.53
471 472 3.427773 GGAGATGATTACGATCGCCCTAC 60.428 52.174 16.60 4.06 34.61 3.18
472 473 2.492484 AGATGATTACGATCGCCCTACC 59.508 50.000 16.60 0.41 34.91 3.18
473 474 0.594602 TGATTACGATCGCCCTACCG 59.405 55.000 16.60 0.00 34.91 4.02
474 475 0.731855 GATTACGATCGCCCTACCGC 60.732 60.000 16.60 0.00 0.00 5.68
475 476 2.151049 ATTACGATCGCCCTACCGCC 62.151 60.000 16.60 0.00 0.00 6.13
477 478 3.991051 CGATCGCCCTACCGCCAT 61.991 66.667 0.26 0.00 0.00 4.40
478 479 2.357517 GATCGCCCTACCGCCATG 60.358 66.667 0.00 0.00 0.00 3.66
479 480 4.626081 ATCGCCCTACCGCCATGC 62.626 66.667 0.00 0.00 0.00 4.06
500 501 3.839432 CGGAGGGGTCGGAGAAGC 61.839 72.222 0.00 0.00 39.69 3.86
501 502 3.839432 GGAGGGGTCGGAGAAGCG 61.839 72.222 0.00 0.00 39.69 4.68
502 503 3.839432 GAGGGGTCGGAGAAGCGG 61.839 72.222 0.00 0.00 39.69 5.52
560 561 3.545481 CGCGCACGCAAGACCTAG 61.545 66.667 16.04 0.00 42.06 3.02
561 562 2.126071 GCGCACGCAAGACCTAGA 60.126 61.111 10.65 0.00 41.49 2.43
562 563 1.519455 GCGCACGCAAGACCTAGAT 60.519 57.895 10.65 0.00 41.49 1.98
563 564 1.483424 GCGCACGCAAGACCTAGATC 61.483 60.000 10.65 0.00 41.49 2.75
564 565 1.202973 CGCACGCAAGACCTAGATCG 61.203 60.000 0.00 0.00 43.62 3.69
565 566 1.483424 GCACGCAAGACCTAGATCGC 61.483 60.000 0.00 0.00 43.62 4.58
566 567 0.872021 CACGCAAGACCTAGATCGCC 60.872 60.000 0.00 0.00 43.62 5.54
567 568 1.038130 ACGCAAGACCTAGATCGCCT 61.038 55.000 0.00 0.00 43.62 5.52
568 569 0.103208 CGCAAGACCTAGATCGCCTT 59.897 55.000 0.00 0.00 43.02 4.35
569 570 1.471676 CGCAAGACCTAGATCGCCTTT 60.472 52.381 0.00 0.00 43.02 3.11
570 571 2.633488 GCAAGACCTAGATCGCCTTTT 58.367 47.619 0.00 0.00 0.00 2.27
571 572 3.010420 GCAAGACCTAGATCGCCTTTTT 58.990 45.455 0.00 0.00 0.00 1.94
585 586 3.124686 TTTTTGTCGCCACAGCCC 58.875 55.556 0.00 0.00 32.71 5.19
586 587 1.754621 TTTTTGTCGCCACAGCCCA 60.755 52.632 0.00 0.00 32.71 5.36
587 588 2.010582 TTTTTGTCGCCACAGCCCAC 62.011 55.000 0.00 0.00 32.71 4.61
588 589 3.705934 TTTGTCGCCACAGCCCACA 62.706 57.895 0.00 0.00 32.71 4.17
589 590 2.974692 TTTGTCGCCACAGCCCACAT 62.975 55.000 0.00 0.00 32.71 3.21
590 591 2.118233 TTGTCGCCACAGCCCACATA 62.118 55.000 0.00 0.00 32.71 2.29
591 592 2.106683 GTCGCCACAGCCCACATAC 61.107 63.158 0.00 0.00 34.57 2.39
592 593 2.824041 CGCCACAGCCCACATACC 60.824 66.667 0.00 0.00 34.57 2.73
593 594 2.824041 GCCACAGCCCACATACCG 60.824 66.667 0.00 0.00 0.00 4.02
594 595 2.124736 CCACAGCCCACATACCGG 60.125 66.667 0.00 0.00 0.00 5.28
595 596 2.668632 CACAGCCCACATACCGGT 59.331 61.111 13.98 13.98 0.00 5.28
596 597 1.002624 CACAGCCCACATACCGGTT 60.003 57.895 15.04 0.00 0.00 4.44
597 598 1.024579 CACAGCCCACATACCGGTTC 61.025 60.000 15.04 0.00 0.00 3.62
598 599 1.813753 CAGCCCACATACCGGTTCG 60.814 63.158 15.04 6.95 0.00 3.95
599 600 3.199891 GCCCACATACCGGTTCGC 61.200 66.667 15.04 1.58 0.00 4.70
600 601 2.582436 CCCACATACCGGTTCGCT 59.418 61.111 15.04 0.00 0.00 4.93
601 602 1.813753 CCCACATACCGGTTCGCTG 60.814 63.158 15.04 8.54 0.00 5.18
602 603 1.216977 CCACATACCGGTTCGCTGA 59.783 57.895 15.04 0.00 0.00 4.26
603 604 0.179084 CCACATACCGGTTCGCTGAT 60.179 55.000 15.04 0.00 0.00 2.90
632 633 6.316390 CCACACTTCTCCTCAACCATAATTAC 59.684 42.308 0.00 0.00 0.00 1.89
634 635 6.106673 CACTTCTCCTCAACCATAATTACGT 58.893 40.000 0.00 0.00 0.00 3.57
636 637 7.762615 CACTTCTCCTCAACCATAATTACGTAA 59.237 37.037 11.02 11.02 0.00 3.18
663 665 9.548208 GCAACAAATATGAAGACTCTAAGTTTC 57.452 33.333 0.00 0.00 0.00 2.78
672 674 7.164122 TGAAGACTCTAAGTTTCAGCATCATT 58.836 34.615 0.00 0.00 0.00 2.57
705 707 2.071778 TCCATAAGCATTTGGAGGCC 57.928 50.000 0.00 0.00 37.10 5.19
709 711 0.326595 TAAGCATTTGGAGGCCGTCA 59.673 50.000 0.00 0.00 31.67 4.35
774 782 1.377536 GTGGAGCCAGATGAAAGAGC 58.622 55.000 0.00 0.00 0.00 4.09
806 839 5.418840 GGAGAAGCCTGGTATTTCAAAATCA 59.581 40.000 0.00 0.00 0.00 2.57
823 856 7.327975 TCAAAATCATACGACTACTGGACATT 58.672 34.615 0.00 0.00 0.00 2.71
862 895 2.031012 CTGCCCTGACGCTGTGAA 59.969 61.111 0.00 0.00 0.00 3.18
1720 1768 6.352737 CCTTATCAAGGGGTTATGTAGTGTGT 60.353 42.308 0.00 0.00 45.27 3.72
1868 1916 0.914644 TTGCTTGGGAGGATGAGGAG 59.085 55.000 0.00 0.00 0.00 3.69
2032 2080 0.940126 AGTTGTGCACTCTTTCTGCG 59.060 50.000 19.41 0.00 37.46 5.18
2382 2430 5.812642 ACTAAAGGAATCATGTGATGTCGTC 59.187 40.000 0.00 0.00 34.49 4.20
2397 2445 2.324330 CGTCGCCCAGATGTTGCAA 61.324 57.895 0.00 0.00 0.00 4.08
2466 2514 4.258543 CGTTATGTAAGGAAGGAAAGCCA 58.741 43.478 0.00 0.00 36.29 4.75
2580 2628 1.009997 AGGGGGATTTGGAATCAGCA 58.990 50.000 3.39 0.00 0.00 4.41
2760 2808 6.656632 ACATACAGGACAGTGATACATAGG 57.343 41.667 0.00 0.00 0.00 2.57
2995 3047 1.000163 GAGGTCTCGCAGTTCAGTCAA 60.000 52.381 0.00 0.00 0.00 3.18
3091 3143 5.296780 CAGCTGACCTTAGAGAAACAACAAA 59.703 40.000 8.42 0.00 0.00 2.83
3094 3146 6.183360 GCTGACCTTAGAGAAACAACAAACTT 60.183 38.462 0.00 0.00 0.00 2.66
3455 3630 4.202493 TGCATATATCAGCATCACAAGGGT 60.202 41.667 0.00 0.00 35.51 4.34
4048 4224 0.913934 TACTCTGGCCCATTCCTGCA 60.914 55.000 0.00 0.00 0.00 4.41
4082 4258 4.314440 GAGGACGTGGCTGTGGCA 62.314 66.667 0.00 0.00 40.87 4.92
4184 4360 1.067425 CAGAACATCGTCAACCCCGTA 60.067 52.381 0.00 0.00 0.00 4.02
4208 4384 1.080772 CATGGTGCTTGCTGTGCTG 60.081 57.895 0.00 0.00 0.00 4.41
4229 4405 3.840078 TGGTCTTCCACATCTTCATCTCA 59.160 43.478 0.00 0.00 39.03 3.27
4268 4444 1.302832 CAGCTTTGGCCTTCTCGGT 60.303 57.895 3.32 0.00 39.73 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.531854 TGAATCACCTTGTTTGGAACTGA 58.468 39.130 0.00 0.00 0.00 3.41
97 98 0.753262 AGCATATCGACGGGCTCTTT 59.247 50.000 0.00 0.00 28.71 2.52
98 99 1.617322 TAGCATATCGACGGGCTCTT 58.383 50.000 9.49 0.00 37.79 2.85
99 100 1.542030 CTTAGCATATCGACGGGCTCT 59.458 52.381 9.49 0.00 37.79 4.09
106 107 7.115663 GGAGAAGAACAATCTTAGCATATCGAC 59.884 40.741 0.00 0.00 45.91 4.20
107 108 7.014711 AGGAGAAGAACAATCTTAGCATATCGA 59.985 37.037 0.00 0.00 45.91 3.59
137 138 6.658391 AGATAGCAAGAGAGCAAAAACTCAAT 59.342 34.615 0.00 0.00 39.26 2.57
185 186 7.608308 TTTGTTTTGGGATTGTTTCAAGAAG 57.392 32.000 0.00 0.00 0.00 2.85
186 187 7.094592 GGTTTTGTTTTGGGATTGTTTCAAGAA 60.095 33.333 0.00 0.00 0.00 2.52
187 188 6.372937 GGTTTTGTTTTGGGATTGTTTCAAGA 59.627 34.615 0.00 0.00 0.00 3.02
188 189 6.150140 TGGTTTTGTTTTGGGATTGTTTCAAG 59.850 34.615 0.00 0.00 0.00 3.02
189 190 6.003950 TGGTTTTGTTTTGGGATTGTTTCAA 58.996 32.000 0.00 0.00 0.00 2.69
190 191 5.560724 TGGTTTTGTTTTGGGATTGTTTCA 58.439 33.333 0.00 0.00 0.00 2.69
191 192 6.502136 TTGGTTTTGTTTTGGGATTGTTTC 57.498 33.333 0.00 0.00 0.00 2.78
192 193 6.901081 TTTGGTTTTGTTTTGGGATTGTTT 57.099 29.167 0.00 0.00 0.00 2.83
193 194 6.889177 AGATTTGGTTTTGTTTTGGGATTGTT 59.111 30.769 0.00 0.00 0.00 2.83
194 195 6.422333 AGATTTGGTTTTGTTTTGGGATTGT 58.578 32.000 0.00 0.00 0.00 2.71
195 196 6.767423 AGAGATTTGGTTTTGTTTTGGGATTG 59.233 34.615 0.00 0.00 0.00 2.67
196 197 6.767423 CAGAGATTTGGTTTTGTTTTGGGATT 59.233 34.615 0.00 0.00 0.00 3.01
197 198 6.126796 ACAGAGATTTGGTTTTGTTTTGGGAT 60.127 34.615 0.00 0.00 0.00 3.85
198 199 5.188751 ACAGAGATTTGGTTTTGTTTTGGGA 59.811 36.000 0.00 0.00 0.00 4.37
199 200 5.427378 ACAGAGATTTGGTTTTGTTTTGGG 58.573 37.500 0.00 0.00 0.00 4.12
200 201 5.523552 GGACAGAGATTTGGTTTTGTTTTGG 59.476 40.000 0.00 0.00 0.00 3.28
201 202 6.105333 TGGACAGAGATTTGGTTTTGTTTTG 58.895 36.000 0.00 0.00 0.00 2.44
202 203 6.293004 TGGACAGAGATTTGGTTTTGTTTT 57.707 33.333 0.00 0.00 0.00 2.43
203 204 5.163416 CCTGGACAGAGATTTGGTTTTGTTT 60.163 40.000 0.00 0.00 0.00 2.83
204 205 4.342092 CCTGGACAGAGATTTGGTTTTGTT 59.658 41.667 0.00 0.00 0.00 2.83
205 206 3.891366 CCTGGACAGAGATTTGGTTTTGT 59.109 43.478 0.00 0.00 0.00 2.83
206 207 3.305608 GCCTGGACAGAGATTTGGTTTTG 60.306 47.826 0.00 0.00 0.00 2.44
207 208 2.893489 GCCTGGACAGAGATTTGGTTTT 59.107 45.455 0.00 0.00 0.00 2.43
208 209 2.108952 AGCCTGGACAGAGATTTGGTTT 59.891 45.455 0.00 0.00 0.00 3.27
209 210 1.707427 AGCCTGGACAGAGATTTGGTT 59.293 47.619 0.00 0.00 0.00 3.67
210 211 1.004044 CAGCCTGGACAGAGATTTGGT 59.996 52.381 0.00 0.00 0.00 3.67
211 212 1.004044 ACAGCCTGGACAGAGATTTGG 59.996 52.381 0.00 0.00 0.00 3.28
212 213 2.354259 GACAGCCTGGACAGAGATTTG 58.646 52.381 0.00 0.00 0.00 2.32
213 214 1.280421 GGACAGCCTGGACAGAGATTT 59.720 52.381 0.00 0.00 0.00 2.17
214 215 0.908198 GGACAGCCTGGACAGAGATT 59.092 55.000 0.00 0.00 0.00 2.40
215 216 1.326213 CGGACAGCCTGGACAGAGAT 61.326 60.000 0.00 0.00 0.00 2.75
216 217 1.979155 CGGACAGCCTGGACAGAGA 60.979 63.158 0.00 0.00 0.00 3.10
217 218 2.575993 CGGACAGCCTGGACAGAG 59.424 66.667 0.00 0.00 0.00 3.35
218 219 2.805313 ATCCGGACAGCCTGGACAGA 62.805 60.000 6.12 0.00 38.86 3.41
219 220 2.303549 GATCCGGACAGCCTGGACAG 62.304 65.000 6.12 0.00 38.86 3.51
220 221 2.284625 ATCCGGACAGCCTGGACA 60.285 61.111 6.12 0.00 38.86 4.02
221 222 2.303549 CTGATCCGGACAGCCTGGAC 62.304 65.000 6.12 0.00 38.86 4.02
222 223 2.038813 TGATCCGGACAGCCTGGA 59.961 61.111 6.12 0.00 39.82 3.86
223 224 2.503061 CTGATCCGGACAGCCTGG 59.497 66.667 6.12 0.00 0.00 4.45
234 235 4.783621 TGCAGGTGCCGCTGATCC 62.784 66.667 0.00 0.00 41.18 3.36
235 236 3.503363 GTGCAGGTGCCGCTGATC 61.503 66.667 0.00 0.00 41.18 2.92
240 241 3.636313 TAGTACGTGCAGGTGCCGC 62.636 63.158 21.78 9.22 41.18 6.53
241 242 1.080366 TTAGTACGTGCAGGTGCCG 60.080 57.895 21.78 7.23 41.18 5.69
242 243 1.017701 GGTTAGTACGTGCAGGTGCC 61.018 60.000 21.78 11.91 41.18 5.01
243 244 0.320073 TGGTTAGTACGTGCAGGTGC 60.320 55.000 21.78 20.00 42.50 5.01
244 245 2.380084 ATGGTTAGTACGTGCAGGTG 57.620 50.000 21.78 0.25 0.00 4.00
245 246 2.827322 TGTATGGTTAGTACGTGCAGGT 59.173 45.455 17.24 17.24 0.00 4.00
246 247 3.513680 TGTATGGTTAGTACGTGCAGG 57.486 47.619 6.38 4.53 0.00 4.85
247 248 5.005394 GTGATTGTATGGTTAGTACGTGCAG 59.995 44.000 6.38 0.00 0.00 4.41
248 249 4.865925 GTGATTGTATGGTTAGTACGTGCA 59.134 41.667 6.38 0.00 0.00 4.57
249 250 4.865925 TGTGATTGTATGGTTAGTACGTGC 59.134 41.667 0.00 0.00 0.00 5.34
250 251 6.455113 GCTTGTGATTGTATGGTTAGTACGTG 60.455 42.308 0.00 0.00 0.00 4.49
251 252 5.579511 GCTTGTGATTGTATGGTTAGTACGT 59.420 40.000 0.00 0.00 0.00 3.57
252 253 5.579119 TGCTTGTGATTGTATGGTTAGTACG 59.421 40.000 0.00 0.00 0.00 3.67
253 254 6.456988 GCTGCTTGTGATTGTATGGTTAGTAC 60.457 42.308 0.00 0.00 0.00 2.73
254 255 5.584649 GCTGCTTGTGATTGTATGGTTAGTA 59.415 40.000 0.00 0.00 0.00 1.82
255 256 4.396166 GCTGCTTGTGATTGTATGGTTAGT 59.604 41.667 0.00 0.00 0.00 2.24
256 257 4.201950 GGCTGCTTGTGATTGTATGGTTAG 60.202 45.833 0.00 0.00 0.00 2.34
257 258 3.694072 GGCTGCTTGTGATTGTATGGTTA 59.306 43.478 0.00 0.00 0.00 2.85
258 259 2.493278 GGCTGCTTGTGATTGTATGGTT 59.507 45.455 0.00 0.00 0.00 3.67
259 260 2.094675 GGCTGCTTGTGATTGTATGGT 58.905 47.619 0.00 0.00 0.00 3.55
260 261 2.093890 TGGCTGCTTGTGATTGTATGG 58.906 47.619 0.00 0.00 0.00 2.74
261 262 2.751259 AGTGGCTGCTTGTGATTGTATG 59.249 45.455 0.00 0.00 0.00 2.39
262 263 3.012518 GAGTGGCTGCTTGTGATTGTAT 58.987 45.455 0.00 0.00 0.00 2.29
263 264 2.426522 GAGTGGCTGCTTGTGATTGTA 58.573 47.619 0.00 0.00 0.00 2.41
264 265 1.242076 GAGTGGCTGCTTGTGATTGT 58.758 50.000 0.00 0.00 0.00 2.71
265 266 0.524862 GGAGTGGCTGCTTGTGATTG 59.475 55.000 0.00 0.00 0.00 2.67
266 267 0.111061 TGGAGTGGCTGCTTGTGATT 59.889 50.000 0.00 0.00 0.00 2.57
267 268 0.322277 CTGGAGTGGCTGCTTGTGAT 60.322 55.000 0.00 0.00 0.00 3.06
268 269 1.071987 CTGGAGTGGCTGCTTGTGA 59.928 57.895 0.00 0.00 0.00 3.58
269 270 2.623915 GCTGGAGTGGCTGCTTGTG 61.624 63.158 0.00 0.00 0.00 3.33
270 271 2.282040 GCTGGAGTGGCTGCTTGT 60.282 61.111 0.00 0.00 0.00 3.16
271 272 2.281970 TGCTGGAGTGGCTGCTTG 60.282 61.111 0.00 0.00 0.00 4.01
272 273 2.033757 CTGCTGGAGTGGCTGCTT 59.966 61.111 0.00 0.00 0.00 3.91
273 274 4.031129 CCTGCTGGAGTGGCTGCT 62.031 66.667 2.92 0.00 34.57 4.24
274 275 4.025858 TCCTGCTGGAGTGGCTGC 62.026 66.667 8.48 0.00 37.46 5.25
275 276 2.046507 GTCCTGCTGGAGTGGCTG 60.047 66.667 13.36 0.00 44.16 4.85
276 277 2.149383 TTGTCCTGCTGGAGTGGCT 61.149 57.895 13.36 0.00 44.16 4.75
277 278 1.968540 GTTGTCCTGCTGGAGTGGC 60.969 63.158 13.36 1.70 44.16 5.01
278 279 0.886490 GTGTTGTCCTGCTGGAGTGG 60.886 60.000 13.36 0.00 44.16 4.00
279 280 0.179048 TGTGTTGTCCTGCTGGAGTG 60.179 55.000 13.36 0.00 44.16 3.51
280 281 0.546122 TTGTGTTGTCCTGCTGGAGT 59.454 50.000 13.36 0.00 44.16 3.85
281 282 0.947244 GTTGTGTTGTCCTGCTGGAG 59.053 55.000 13.36 0.00 44.16 3.86
282 283 0.254462 TGTTGTGTTGTCCTGCTGGA 59.746 50.000 8.48 8.48 40.69 3.86
283 284 1.102154 TTGTTGTGTTGTCCTGCTGG 58.898 50.000 2.58 2.58 0.00 4.85
284 285 1.531677 CGTTGTTGTGTTGTCCTGCTG 60.532 52.381 0.00 0.00 0.00 4.41
285 286 0.732571 CGTTGTTGTGTTGTCCTGCT 59.267 50.000 0.00 0.00 0.00 4.24
286 287 0.865639 GCGTTGTTGTGTTGTCCTGC 60.866 55.000 0.00 0.00 0.00 4.85
287 288 0.449786 TGCGTTGTTGTGTTGTCCTG 59.550 50.000 0.00 0.00 0.00 3.86
288 289 1.169577 TTGCGTTGTTGTGTTGTCCT 58.830 45.000 0.00 0.00 0.00 3.85
289 290 1.917303 CTTTGCGTTGTTGTGTTGTCC 59.083 47.619 0.00 0.00 0.00 4.02
290 291 2.592459 GTCTTTGCGTTGTTGTGTTGTC 59.408 45.455 0.00 0.00 0.00 3.18
291 292 2.227865 AGTCTTTGCGTTGTTGTGTTGT 59.772 40.909 0.00 0.00 0.00 3.32
292 293 2.845967 GAGTCTTTGCGTTGTTGTGTTG 59.154 45.455 0.00 0.00 0.00 3.33
293 294 2.747446 AGAGTCTTTGCGTTGTTGTGTT 59.253 40.909 0.00 0.00 0.00 3.32
294 295 2.095853 CAGAGTCTTTGCGTTGTTGTGT 59.904 45.455 0.00 0.00 0.00 3.72
295 296 2.351418 TCAGAGTCTTTGCGTTGTTGTG 59.649 45.455 0.00 0.00 0.00 3.33
296 297 2.627945 TCAGAGTCTTTGCGTTGTTGT 58.372 42.857 0.00 0.00 0.00 3.32
297 298 3.548587 CATCAGAGTCTTTGCGTTGTTG 58.451 45.455 0.00 0.00 0.00 3.33
298 299 2.549754 CCATCAGAGTCTTTGCGTTGTT 59.450 45.455 0.00 0.00 0.00 2.83
299 300 2.146342 CCATCAGAGTCTTTGCGTTGT 58.854 47.619 0.00 0.00 0.00 3.32
300 301 2.146342 ACCATCAGAGTCTTTGCGTTG 58.854 47.619 0.00 0.00 0.00 4.10
301 302 2.417719 GACCATCAGAGTCTTTGCGTT 58.582 47.619 0.00 0.00 0.00 4.84
302 303 1.338200 GGACCATCAGAGTCTTTGCGT 60.338 52.381 0.00 0.00 34.56 5.24
303 304 1.363744 GGACCATCAGAGTCTTTGCG 58.636 55.000 0.00 0.00 34.56 4.85
304 305 1.363744 CGGACCATCAGAGTCTTTGC 58.636 55.000 0.00 0.00 34.56 3.68
305 306 1.363744 GCGGACCATCAGAGTCTTTG 58.636 55.000 0.00 0.00 34.56 2.77
306 307 0.108615 CGCGGACCATCAGAGTCTTT 60.109 55.000 0.00 0.00 34.56 2.52
307 308 1.251527 ACGCGGACCATCAGAGTCTT 61.252 55.000 12.47 0.00 34.56 3.01
308 309 0.393944 TACGCGGACCATCAGAGTCT 60.394 55.000 12.47 0.00 34.56 3.24
309 310 0.248539 GTACGCGGACCATCAGAGTC 60.249 60.000 11.40 0.00 0.00 3.36
310 311 0.680280 AGTACGCGGACCATCAGAGT 60.680 55.000 20.07 0.00 0.00 3.24
311 312 0.248661 CAGTACGCGGACCATCAGAG 60.249 60.000 20.07 0.00 0.00 3.35
312 313 1.663379 CCAGTACGCGGACCATCAGA 61.663 60.000 20.07 0.00 0.00 3.27
313 314 1.226974 CCAGTACGCGGACCATCAG 60.227 63.158 20.07 3.05 0.00 2.90
314 315 1.252215 TTCCAGTACGCGGACCATCA 61.252 55.000 20.07 0.00 30.29 3.07
315 316 0.108520 TTTCCAGTACGCGGACCATC 60.109 55.000 20.07 0.00 30.29 3.51
316 317 0.322322 TTTTCCAGTACGCGGACCAT 59.678 50.000 20.07 0.00 30.29 3.55
317 318 0.106335 TTTTTCCAGTACGCGGACCA 59.894 50.000 20.07 0.00 30.29 4.02
318 319 2.917172 TTTTTCCAGTACGCGGACC 58.083 52.632 20.07 0.00 30.29 4.46
333 334 4.100498 TCCTTCAGGTCGTCTAGTGTTTTT 59.900 41.667 0.00 0.00 36.34 1.94
334 335 3.640029 TCCTTCAGGTCGTCTAGTGTTTT 59.360 43.478 0.00 0.00 36.34 2.43
335 336 3.228453 TCCTTCAGGTCGTCTAGTGTTT 58.772 45.455 0.00 0.00 36.34 2.83
336 337 2.820787 CTCCTTCAGGTCGTCTAGTGTT 59.179 50.000 0.00 0.00 36.34 3.32
337 338 2.438411 CTCCTTCAGGTCGTCTAGTGT 58.562 52.381 0.00 0.00 36.34 3.55
338 339 1.133407 GCTCCTTCAGGTCGTCTAGTG 59.867 57.143 0.00 0.00 36.34 2.74
339 340 1.465794 GCTCCTTCAGGTCGTCTAGT 58.534 55.000 0.00 0.00 36.34 2.57
340 341 0.741915 GGCTCCTTCAGGTCGTCTAG 59.258 60.000 0.00 0.00 36.34 2.43
341 342 1.030488 CGGCTCCTTCAGGTCGTCTA 61.030 60.000 0.00 0.00 36.34 2.59
342 343 2.344203 CGGCTCCTTCAGGTCGTCT 61.344 63.158 0.00 0.00 36.34 4.18
343 344 2.182030 CGGCTCCTTCAGGTCGTC 59.818 66.667 0.00 0.00 36.34 4.20
344 345 3.382832 CCGGCTCCTTCAGGTCGT 61.383 66.667 0.00 0.00 36.34 4.34
345 346 4.821589 GCCGGCTCCTTCAGGTCG 62.822 72.222 22.15 0.00 36.34 4.79
346 347 2.022240 CTAGCCGGCTCCTTCAGGTC 62.022 65.000 36.73 0.00 36.34 3.85
347 348 2.038975 TAGCCGGCTCCTTCAGGT 59.961 61.111 36.73 8.54 36.34 4.00
348 349 2.801631 CCTAGCCGGCTCCTTCAGG 61.802 68.421 36.73 29.42 0.00 3.86
349 350 1.330655 TTCCTAGCCGGCTCCTTCAG 61.331 60.000 36.73 24.34 0.00 3.02
350 351 0.907704 TTTCCTAGCCGGCTCCTTCA 60.908 55.000 36.73 15.02 0.00 3.02
351 352 0.470341 ATTTCCTAGCCGGCTCCTTC 59.530 55.000 36.73 0.00 0.00 3.46
352 353 0.470341 GATTTCCTAGCCGGCTCCTT 59.530 55.000 36.73 12.66 0.00 3.36
353 354 1.749334 CGATTTCCTAGCCGGCTCCT 61.749 60.000 36.73 13.13 0.00 3.69
354 355 1.301009 CGATTTCCTAGCCGGCTCC 60.301 63.158 36.73 13.05 0.00 4.70
355 356 0.318762 ATCGATTTCCTAGCCGGCTC 59.681 55.000 36.73 16.49 0.00 4.70
356 357 1.629043 TATCGATTTCCTAGCCGGCT 58.371 50.000 34.85 34.85 0.00 5.52
357 358 2.450609 TTATCGATTTCCTAGCCGGC 57.549 50.000 21.89 21.89 0.00 6.13
358 359 3.183775 CGTTTTATCGATTTCCTAGCCGG 59.816 47.826 1.71 0.00 0.00 6.13
359 360 3.800506 ACGTTTTATCGATTTCCTAGCCG 59.199 43.478 1.71 0.00 34.70 5.52
360 361 4.210746 GGACGTTTTATCGATTTCCTAGCC 59.789 45.833 1.71 0.00 34.70 3.93
361 362 4.807304 TGGACGTTTTATCGATTTCCTAGC 59.193 41.667 1.71 0.00 34.70 3.42
362 363 5.462398 CCTGGACGTTTTATCGATTTCCTAG 59.538 44.000 1.71 0.00 34.70 3.02
363 364 5.353938 CCTGGACGTTTTATCGATTTCCTA 58.646 41.667 1.71 0.00 34.70 2.94
364 365 4.189231 CCTGGACGTTTTATCGATTTCCT 58.811 43.478 1.71 0.00 34.70 3.36
365 366 3.242641 GCCTGGACGTTTTATCGATTTCC 60.243 47.826 1.71 1.35 34.70 3.13
366 367 3.372822 TGCCTGGACGTTTTATCGATTTC 59.627 43.478 1.71 0.00 34.70 2.17
367 368 3.340034 TGCCTGGACGTTTTATCGATTT 58.660 40.909 1.71 0.00 34.70 2.17
368 369 2.980568 TGCCTGGACGTTTTATCGATT 58.019 42.857 1.71 0.00 34.70 3.34
369 370 2.684001 TGCCTGGACGTTTTATCGAT 57.316 45.000 2.16 2.16 34.70 3.59
370 371 2.093921 TCATGCCTGGACGTTTTATCGA 60.094 45.455 0.00 0.00 34.70 3.59
371 372 2.276201 TCATGCCTGGACGTTTTATCG 58.724 47.619 0.00 0.00 0.00 2.92
372 373 3.487544 GCTTCATGCCTGGACGTTTTATC 60.488 47.826 0.00 0.00 35.15 1.75
373 374 2.423538 GCTTCATGCCTGGACGTTTTAT 59.576 45.455 0.00 0.00 35.15 1.40
374 375 1.810151 GCTTCATGCCTGGACGTTTTA 59.190 47.619 0.00 0.00 35.15 1.52
375 376 0.598065 GCTTCATGCCTGGACGTTTT 59.402 50.000 0.00 0.00 35.15 2.43
376 377 0.250901 AGCTTCATGCCTGGACGTTT 60.251 50.000 0.00 0.00 44.23 3.60
377 378 0.957395 CAGCTTCATGCCTGGACGTT 60.957 55.000 0.00 0.00 44.23 3.99
378 379 1.376424 CAGCTTCATGCCTGGACGT 60.376 57.895 0.00 0.00 44.23 4.34
379 380 2.758089 GCAGCTTCATGCCTGGACG 61.758 63.158 0.00 0.00 44.23 4.79
380 381 2.758089 CGCAGCTTCATGCCTGGAC 61.758 63.158 0.00 0.00 43.49 4.02
381 382 2.437180 CGCAGCTTCATGCCTGGA 60.437 61.111 0.00 0.00 43.49 3.86
382 383 2.262471 GAACGCAGCTTCATGCCTGG 62.262 60.000 9.05 0.00 43.49 4.45
383 384 1.136147 GAACGCAGCTTCATGCCTG 59.864 57.895 0.00 0.00 43.49 4.85
384 385 0.679002 ATGAACGCAGCTTCATGCCT 60.679 50.000 15.31 0.00 43.49 4.75
385 386 0.524816 CATGAACGCAGCTTCATGCC 60.525 55.000 23.26 0.00 43.27 4.40
386 387 0.524816 CCATGAACGCAGCTTCATGC 60.525 55.000 26.40 3.34 45.47 4.06
387 388 1.089112 TCCATGAACGCAGCTTCATG 58.911 50.000 25.60 25.60 45.90 3.07
388 389 1.089920 GTCCATGAACGCAGCTTCAT 58.910 50.000 11.97 11.97 38.23 2.57
389 390 1.291184 CGTCCATGAACGCAGCTTCA 61.291 55.000 0.00 9.00 35.64 3.02
390 391 1.421485 CGTCCATGAACGCAGCTTC 59.579 57.895 0.00 0.00 35.64 3.86
391 392 2.034879 CCGTCCATGAACGCAGCTT 61.035 57.895 0.00 0.00 41.26 3.74
392 393 2.434884 CCGTCCATGAACGCAGCT 60.435 61.111 0.00 0.00 41.26 4.24
393 394 3.499737 CCCGTCCATGAACGCAGC 61.500 66.667 0.00 0.00 41.26 5.25
394 395 2.100631 GTCCCGTCCATGAACGCAG 61.101 63.158 0.00 0.00 41.26 5.18
395 396 2.047655 GTCCCGTCCATGAACGCA 60.048 61.111 0.00 0.00 41.26 5.24
396 397 3.186047 CGTCCCGTCCATGAACGC 61.186 66.667 0.00 0.00 41.26 4.84
397 398 2.508439 CCGTCCCGTCCATGAACG 60.508 66.667 0.00 0.00 42.24 3.95
398 399 1.153628 CTCCGTCCCGTCCATGAAC 60.154 63.158 0.00 0.00 0.00 3.18
399 400 0.901114 TTCTCCGTCCCGTCCATGAA 60.901 55.000 0.00 0.00 0.00 2.57
400 401 0.901114 TTTCTCCGTCCCGTCCATGA 60.901 55.000 0.00 0.00 0.00 3.07
401 402 0.036765 TTTTCTCCGTCCCGTCCATG 60.037 55.000 0.00 0.00 0.00 3.66
402 403 0.249398 CTTTTCTCCGTCCCGTCCAT 59.751 55.000 0.00 0.00 0.00 3.41
403 404 1.669440 CTTTTCTCCGTCCCGTCCA 59.331 57.895 0.00 0.00 0.00 4.02
404 405 1.740664 GCTTTTCTCCGTCCCGTCC 60.741 63.158 0.00 0.00 0.00 4.79
405 406 1.005394 TGCTTTTCTCCGTCCCGTC 60.005 57.895 0.00 0.00 0.00 4.79
406 407 1.004918 CTGCTTTTCTCCGTCCCGT 60.005 57.895 0.00 0.00 0.00 5.28
407 408 2.391389 GCTGCTTTTCTCCGTCCCG 61.391 63.158 0.00 0.00 0.00 5.14
408 409 1.003233 AGCTGCTTTTCTCCGTCCC 60.003 57.895 0.00 0.00 0.00 4.46
409 410 0.320771 TCAGCTGCTTTTCTCCGTCC 60.321 55.000 9.47 0.00 0.00 4.79
410 411 1.731720 ATCAGCTGCTTTTCTCCGTC 58.268 50.000 9.47 0.00 0.00 4.79
411 412 2.191128 AATCAGCTGCTTTTCTCCGT 57.809 45.000 9.47 0.00 0.00 4.69
412 413 2.485426 TCAAATCAGCTGCTTTTCTCCG 59.515 45.455 12.70 2.34 0.00 4.63
413 414 4.157289 TCATCAAATCAGCTGCTTTTCTCC 59.843 41.667 12.70 0.00 0.00 3.71
414 415 5.306532 TCATCAAATCAGCTGCTTTTCTC 57.693 39.130 12.70 0.00 0.00 2.87
415 416 5.710984 CTTCATCAAATCAGCTGCTTTTCT 58.289 37.500 12.70 1.07 0.00 2.52
416 417 4.326548 GCTTCATCAAATCAGCTGCTTTTC 59.673 41.667 12.70 0.00 0.00 2.29
417 418 4.243270 GCTTCATCAAATCAGCTGCTTTT 58.757 39.130 12.70 10.22 0.00 2.27
418 419 3.257375 TGCTTCATCAAATCAGCTGCTTT 59.743 39.130 9.47 9.60 33.15 3.51
419 420 2.823747 TGCTTCATCAAATCAGCTGCTT 59.176 40.909 9.47 1.96 33.15 3.91
420 421 2.443416 TGCTTCATCAAATCAGCTGCT 58.557 42.857 9.47 0.00 33.15 4.24
421 422 2.933495 TGCTTCATCAAATCAGCTGC 57.067 45.000 9.47 0.00 33.15 5.25
422 423 5.063438 CCAATTTGCTTCATCAAATCAGCTG 59.937 40.000 7.63 7.63 43.56 4.24
423 424 5.175859 CCAATTTGCTTCATCAAATCAGCT 58.824 37.500 2.70 0.00 43.56 4.24
424 425 4.201783 GCCAATTTGCTTCATCAAATCAGC 60.202 41.667 2.70 5.36 43.56 4.26
425 426 5.063438 CAGCCAATTTGCTTCATCAAATCAG 59.937 40.000 0.32 0.07 43.56 2.90
426 427 4.932799 CAGCCAATTTGCTTCATCAAATCA 59.067 37.500 0.32 0.00 43.56 2.57
427 428 4.331717 CCAGCCAATTTGCTTCATCAAATC 59.668 41.667 0.32 0.00 43.56 2.17
428 429 4.020039 TCCAGCCAATTTGCTTCATCAAAT 60.020 37.500 0.32 0.00 45.54 2.32
429 430 3.324268 TCCAGCCAATTTGCTTCATCAAA 59.676 39.130 0.32 0.00 40.32 2.69
430 431 2.898612 TCCAGCCAATTTGCTTCATCAA 59.101 40.909 0.32 0.00 40.32 2.57
431 432 2.494471 CTCCAGCCAATTTGCTTCATCA 59.506 45.455 0.32 0.00 40.32 3.07
432 433 2.756760 TCTCCAGCCAATTTGCTTCATC 59.243 45.455 0.32 0.00 40.32 2.92
433 434 2.811410 TCTCCAGCCAATTTGCTTCAT 58.189 42.857 0.32 0.00 40.32 2.57
434 435 2.291209 TCTCCAGCCAATTTGCTTCA 57.709 45.000 0.32 0.00 40.32 3.02
435 436 2.756760 TCATCTCCAGCCAATTTGCTTC 59.243 45.455 0.32 0.00 40.32 3.86
436 437 2.811410 TCATCTCCAGCCAATTTGCTT 58.189 42.857 0.32 0.00 40.32 3.91
437 438 2.519771 TCATCTCCAGCCAATTTGCT 57.480 45.000 0.00 0.00 44.00 3.91
438 439 3.814005 AATCATCTCCAGCCAATTTGC 57.186 42.857 0.00 0.00 0.00 3.68
439 440 4.576053 TCGTAATCATCTCCAGCCAATTTG 59.424 41.667 0.00 0.00 0.00 2.32
440 441 4.780815 TCGTAATCATCTCCAGCCAATTT 58.219 39.130 0.00 0.00 0.00 1.82
441 442 4.422073 TCGTAATCATCTCCAGCCAATT 57.578 40.909 0.00 0.00 0.00 2.32
442 443 4.573900 GATCGTAATCATCTCCAGCCAAT 58.426 43.478 0.00 0.00 31.76 3.16
443 444 3.552890 CGATCGTAATCATCTCCAGCCAA 60.553 47.826 7.03 0.00 31.76 4.52
444 445 2.029918 CGATCGTAATCATCTCCAGCCA 60.030 50.000 7.03 0.00 31.76 4.75
445 446 2.600731 CGATCGTAATCATCTCCAGCC 58.399 52.381 7.03 0.00 31.76 4.85
446 447 1.989165 GCGATCGTAATCATCTCCAGC 59.011 52.381 17.81 0.00 31.76 4.85
447 448 2.600731 GGCGATCGTAATCATCTCCAG 58.399 52.381 17.81 0.00 31.76 3.86
448 449 1.272490 GGGCGATCGTAATCATCTCCA 59.728 52.381 17.81 0.00 31.76 3.86
449 450 1.546476 AGGGCGATCGTAATCATCTCC 59.454 52.381 17.81 5.53 31.76 3.71
450 451 3.427773 GGTAGGGCGATCGTAATCATCTC 60.428 52.174 17.81 0.00 31.76 2.75
451 452 2.492484 GGTAGGGCGATCGTAATCATCT 59.508 50.000 17.81 6.59 31.76 2.90
452 453 2.731341 CGGTAGGGCGATCGTAATCATC 60.731 54.545 17.81 0.00 31.76 2.92
453 454 1.201647 CGGTAGGGCGATCGTAATCAT 59.798 52.381 17.81 4.81 31.76 2.45
454 455 0.594602 CGGTAGGGCGATCGTAATCA 59.405 55.000 17.81 0.00 31.76 2.57
455 456 0.731855 GCGGTAGGGCGATCGTAATC 60.732 60.000 17.81 0.00 0.00 1.75
456 457 1.288127 GCGGTAGGGCGATCGTAAT 59.712 57.895 17.81 5.18 0.00 1.89
457 458 2.723746 GCGGTAGGGCGATCGTAA 59.276 61.111 17.81 0.00 0.00 3.18
458 459 3.289834 GGCGGTAGGGCGATCGTA 61.290 66.667 17.81 0.00 0.00 3.43
460 461 3.991051 ATGGCGGTAGGGCGATCG 61.991 66.667 11.69 11.69 46.04 3.69
461 462 2.357517 CATGGCGGTAGGGCGATC 60.358 66.667 0.00 0.00 46.04 3.69
462 463 4.626081 GCATGGCGGTAGGGCGAT 62.626 66.667 0.00 0.00 46.04 4.58
483 484 3.839432 GCTTCTCCGACCCCTCCG 61.839 72.222 0.00 0.00 0.00 4.63
484 485 3.839432 CGCTTCTCCGACCCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
485 486 3.839432 CCGCTTCTCCGACCCCTC 61.839 72.222 0.00 0.00 0.00 4.30
543 544 3.545481 CTAGGTCTTGCGTGCGCG 61.545 66.667 16.86 16.86 45.51 6.86
544 545 1.483424 GATCTAGGTCTTGCGTGCGC 61.483 60.000 9.85 9.85 42.35 6.09
545 546 1.202973 CGATCTAGGTCTTGCGTGCG 61.203 60.000 0.62 0.00 0.00 5.34
546 547 1.483424 GCGATCTAGGTCTTGCGTGC 61.483 60.000 0.62 0.00 0.00 5.34
547 548 0.872021 GGCGATCTAGGTCTTGCGTG 60.872 60.000 0.62 0.00 0.00 5.34
548 549 1.038130 AGGCGATCTAGGTCTTGCGT 61.038 55.000 0.62 0.00 0.00 5.24
549 550 0.103208 AAGGCGATCTAGGTCTTGCG 59.897 55.000 0.62 0.00 0.00 4.85
550 551 2.317530 AAAGGCGATCTAGGTCTTGC 57.682 50.000 0.62 0.00 0.00 4.01
568 569 1.754621 TGGGCTGTGGCGACAAAAA 60.755 52.632 2.34 0.00 46.06 1.94
569 570 2.124109 TGGGCTGTGGCGACAAAA 60.124 55.556 2.34 0.00 46.06 2.44
570 571 2.904866 GTGGGCTGTGGCGACAAA 60.905 61.111 2.34 0.00 46.06 2.83
571 572 4.182433 TGTGGGCTGTGGCGACAA 62.182 61.111 2.34 0.00 42.77 3.18
573 574 2.106683 GTATGTGGGCTGTGGCGAC 61.107 63.158 0.00 0.00 39.81 5.19
574 575 2.267642 GTATGTGGGCTGTGGCGA 59.732 61.111 0.00 0.00 39.81 5.54
575 576 2.824041 GGTATGTGGGCTGTGGCG 60.824 66.667 0.00 0.00 39.81 5.69
576 577 2.824041 CGGTATGTGGGCTGTGGC 60.824 66.667 0.00 0.00 37.82 5.01
577 578 2.124736 CCGGTATGTGGGCTGTGG 60.125 66.667 0.00 0.00 0.00 4.17
578 579 1.002624 AACCGGTATGTGGGCTGTG 60.003 57.895 8.00 0.00 0.00 3.66
579 580 1.298667 GAACCGGTATGTGGGCTGT 59.701 57.895 8.00 0.00 0.00 4.40
580 581 1.813753 CGAACCGGTATGTGGGCTG 60.814 63.158 8.00 0.00 0.00 4.85
581 582 2.582436 CGAACCGGTATGTGGGCT 59.418 61.111 8.00 0.00 0.00 5.19
582 583 3.199891 GCGAACCGGTATGTGGGC 61.200 66.667 8.00 1.17 0.00 5.36
583 584 1.813753 CAGCGAACCGGTATGTGGG 60.814 63.158 8.00 0.00 35.27 4.61
584 585 0.179084 ATCAGCGAACCGGTATGTGG 60.179 55.000 8.00 0.00 35.27 4.17
585 586 2.502213 TATCAGCGAACCGGTATGTG 57.498 50.000 8.00 3.39 35.27 3.21
586 587 3.192466 GTTTATCAGCGAACCGGTATGT 58.808 45.455 8.00 0.00 35.27 2.29
587 588 2.542595 GGTTTATCAGCGAACCGGTATG 59.457 50.000 8.00 4.18 36.31 2.39
588 589 2.168936 TGGTTTATCAGCGAACCGGTAT 59.831 45.455 8.00 0.00 46.55 2.73
589 590 1.549620 TGGTTTATCAGCGAACCGGTA 59.450 47.619 8.00 0.00 46.55 4.02
590 591 0.322322 TGGTTTATCAGCGAACCGGT 59.678 50.000 0.00 0.00 46.55 5.28
591 592 0.725117 GTGGTTTATCAGCGAACCGG 59.275 55.000 0.00 0.00 46.55 5.28
592 593 1.127951 GTGTGGTTTATCAGCGAACCG 59.872 52.381 0.00 0.00 46.55 4.44
593 594 2.423577 AGTGTGGTTTATCAGCGAACC 58.576 47.619 0.00 0.00 44.40 3.62
594 595 3.746492 AGAAGTGTGGTTTATCAGCGAAC 59.254 43.478 0.00 0.00 0.00 3.95
595 596 3.994392 GAGAAGTGTGGTTTATCAGCGAA 59.006 43.478 0.00 0.00 0.00 4.70
596 597 3.585862 GAGAAGTGTGGTTTATCAGCGA 58.414 45.455 0.00 0.00 0.00 4.93
597 598 2.673368 GGAGAAGTGTGGTTTATCAGCG 59.327 50.000 0.00 0.00 0.00 5.18
598 599 3.935828 GAGGAGAAGTGTGGTTTATCAGC 59.064 47.826 0.00 0.00 0.00 4.26
599 600 5.152623 TGAGGAGAAGTGTGGTTTATCAG 57.847 43.478 0.00 0.00 0.00 2.90
600 601 5.305585 GTTGAGGAGAAGTGTGGTTTATCA 58.694 41.667 0.00 0.00 0.00 2.15
601 602 4.695928 GGTTGAGGAGAAGTGTGGTTTATC 59.304 45.833 0.00 0.00 0.00 1.75
602 603 4.104102 TGGTTGAGGAGAAGTGTGGTTTAT 59.896 41.667 0.00 0.00 0.00 1.40
603 604 3.456644 TGGTTGAGGAGAAGTGTGGTTTA 59.543 43.478 0.00 0.00 0.00 2.01
632 633 7.295952 AGAGTCTTCATATTTGTTGCTTACG 57.704 36.000 0.00 0.00 0.00 3.18
634 635 9.944376 ACTTAGAGTCTTCATATTTGTTGCTTA 57.056 29.630 0.00 0.00 0.00 3.09
636 637 8.854614 AACTTAGAGTCTTCATATTTGTTGCT 57.145 30.769 0.00 0.00 0.00 3.91
663 665 3.789756 GCGAATCTGTTGAAATGATGCTG 59.210 43.478 0.00 0.00 0.00 4.41
664 666 3.693085 AGCGAATCTGTTGAAATGATGCT 59.307 39.130 0.00 0.00 0.00 3.79
672 674 3.623060 GCTTATGGAGCGAATCTGTTGAA 59.377 43.478 0.00 0.00 42.46 2.69
709 711 6.238484 GCAACTCTAGCCAAATCGTCATATTT 60.238 38.462 0.00 0.00 0.00 1.40
751 758 1.005215 CTTTCATCTGGCTCCACCCTT 59.995 52.381 0.00 0.00 37.83 3.95
774 782 1.558756 ACCAGGCTTCTCCATCTTCAG 59.441 52.381 0.00 0.00 37.29 3.02
806 839 4.643334 TGCTACAATGTCCAGTAGTCGTAT 59.357 41.667 0.00 0.00 39.82 3.06
862 895 2.113986 GGAGCAAGCTGTGTGGGT 59.886 61.111 0.00 0.00 0.00 4.51
953 998 2.038387 ATGCGATTGGTGGTTAGGAC 57.962 50.000 0.00 0.00 0.00 3.85
1023 1068 2.850833 TGGAGGAGGATGAGAAATGGT 58.149 47.619 0.00 0.00 0.00 3.55
1033 1078 3.090532 GCGGGGTTGGAGGAGGAT 61.091 66.667 0.00 0.00 0.00 3.24
1109 1157 0.248949 GGGTATCTCCTTGACGACGC 60.249 60.000 0.00 0.00 36.25 5.19
1362 1410 0.682852 TTTCATCGAACACCTCCGGT 59.317 50.000 0.00 0.00 35.62 5.28
1377 1425 0.986527 TGAGGAGGCTCAGCATTTCA 59.013 50.000 17.69 6.87 0.00 2.69
1720 1768 2.429930 CGCCTCAACAACCCTCCA 59.570 61.111 0.00 0.00 0.00 3.86
1868 1916 2.158957 TCTGGAAATAGACCCGCATCAC 60.159 50.000 0.00 0.00 0.00 3.06
2032 2080 0.548031 TCAGCCATCCTCCCATTCAC 59.452 55.000 0.00 0.00 0.00 3.18
2223 2271 4.479619 CTTTGCAGAGACCATTTAACAGC 58.520 43.478 0.00 0.00 0.00 4.40
2382 2430 0.388907 CCTTTTGCAACATCTGGGCG 60.389 55.000 0.00 0.00 0.00 6.13
2397 2445 6.155666 CACAGTAGTGGGAAAGAAACCCTTT 61.156 44.000 1.92 0.00 46.82 3.11
2466 2514 0.772124 TGAAGTCTTTGGCCTCCCCT 60.772 55.000 3.32 0.00 0.00 4.79
2580 2628 4.526970 ACAAGTCATCCAACAAAGACAGT 58.473 39.130 0.00 0.00 33.56 3.55
2995 3047 0.895100 ATCTGGCACGCCACATTGTT 60.895 50.000 6.67 0.00 41.89 2.83
3053 3105 4.646492 AGGTCAGCTGATTGTCAACTTTTT 59.354 37.500 21.47 0.00 0.00 1.94
3091 3143 9.794719 AAACTTAACTATAAGCTTTCCAGAAGT 57.205 29.630 3.20 5.47 41.92 3.01
3455 3630 7.038302 ACTCAGTCTAGTTCATTATGGACCAAA 60.038 37.037 0.00 0.00 0.00 3.28
4048 4224 2.044252 CAGCCTGCCCAATGAGCT 60.044 61.111 0.00 0.00 0.00 4.09
4112 4288 4.017877 GCAAACGCGAGCAGCTGT 62.018 61.111 15.93 1.59 45.59 4.40
4184 4360 1.003355 AGCAAGCACCATGTACGCT 60.003 52.632 0.00 0.00 37.68 5.07
4208 4384 4.478206 TGAGATGAAGATGTGGAAGACC 57.522 45.455 0.00 0.00 0.00 3.85
4229 4405 2.029288 CACGAACACAGCGAGCCAT 61.029 57.895 0.00 0.00 0.00 4.40
4268 4444 3.282271 CTCAGAGTCAGAGCCGCA 58.718 61.111 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.