Multiple sequence alignment - TraesCS5A01G352900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G352900 chr5A 100.000 4739 0 0 1 4739 555569298 555564560 0.000000e+00 8752.0
1 TraesCS5A01G352900 chr5D 90.439 4236 193 81 523 4667 439678742 439674628 0.000000e+00 5384.0
2 TraesCS5A01G352900 chr5B 90.457 3762 205 70 736 4395 534365822 534362113 0.000000e+00 4817.0
3 TraesCS5A01G352900 chr5B 86.282 277 32 6 8 282 534366469 534366197 3.590000e-76 296.0
4 TraesCS5A01G352900 chr5B 95.954 173 3 2 526 697 534365997 534365828 1.300000e-70 278.0
5 TraesCS5A01G352900 chr5B 100.000 32 0 0 4687 4718 534361519 534361488 5.120000e-05 60.2
6 TraesCS5A01G352900 chr2B 85.629 167 24 0 1035 1201 316052097 316051931 4.870000e-40 176.0
7 TraesCS5A01G352900 chr2D 85.030 167 25 0 1035 1201 288615814 288615648 2.270000e-38 171.0
8 TraesCS5A01G352900 chr2A 83.234 167 28 0 1035 1201 348093432 348093266 2.280000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G352900 chr5A 555564560 555569298 4738 True 8752.0 8752 100.00000 1 4739 1 chr5A.!!$R1 4738
1 TraesCS5A01G352900 chr5D 439674628 439678742 4114 True 5384.0 5384 90.43900 523 4667 1 chr5D.!!$R1 4144
2 TraesCS5A01G352900 chr5B 534361488 534366469 4981 True 1362.8 4817 93.17325 8 4718 4 chr5B.!!$R1 4710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 419 0.391927 CCGCCTCCGTACCATTTTCA 60.392 55.0 0.00 0.0 0.00 2.69 F
845 872 0.673956 GGTCACTTTTCTCCCTCCGC 60.674 60.0 0.00 0.0 0.00 5.54 F
2079 2138 0.253347 TCAAGAGGCCAGAGGGGAAT 60.253 55.0 5.01 0.0 40.01 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1434 1484 0.447801 CGGCCCGAATTTGAACAGAG 59.552 55.0 0.0 0.0 0.00 3.35 R
2094 2153 0.976641 TCTCGCTGAAACTGATGGGT 59.023 50.0 0.0 0.0 0.00 4.51 R
3959 4104 0.111061 ATCAGCTTCTGCACCCACAA 59.889 50.0 0.0 0.0 42.74 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.343307 TTTAGGGGGACGTAAATGAGTAC 57.657 43.478 0.00 0.00 43.53 2.73
116 117 8.291032 ACGAAATATATGAAACAAAAACGGACA 58.709 29.630 0.00 0.00 0.00 4.02
126 127 2.742954 AAAACGGACACAAGTAACGC 57.257 45.000 0.00 0.00 33.18 4.84
127 128 0.939419 AAACGGACACAAGTAACGCC 59.061 50.000 0.00 0.00 33.18 5.68
140 141 5.910723 ACAAGTAACGCCGAAAGTAAATTTG 59.089 36.000 0.00 0.00 0.00 2.32
142 143 4.756135 AGTAACGCCGAAAGTAAATTTGGA 59.244 37.500 0.00 0.00 0.00 3.53
162 163 7.827819 TTGGATCGAATTCAAAGTAGTACAG 57.172 36.000 6.22 0.00 0.00 2.74
192 193 6.213600 AGAAGCAAGTATTTGTAGGAGAAGGA 59.786 38.462 0.00 0.00 36.65 3.36
234 237 7.583040 CGAAAAGGAGAAGAGAAAACTAAAACG 59.417 37.037 0.00 0.00 0.00 3.60
240 243 7.170998 GGAGAAGAGAAAACTAAAACGTGATGA 59.829 37.037 0.00 0.00 0.00 2.92
244 247 9.503427 AAGAGAAAACTAAAACGTGATGAAAAG 57.497 29.630 0.00 0.00 0.00 2.27
245 248 8.889717 AGAGAAAACTAAAACGTGATGAAAAGA 58.110 29.630 0.00 0.00 0.00 2.52
246 249 9.498307 GAGAAAACTAAAACGTGATGAAAAGAA 57.502 29.630 0.00 0.00 0.00 2.52
247 250 9.849166 AGAAAACTAAAACGTGATGAAAAGAAA 57.151 25.926 0.00 0.00 0.00 2.52
263 266 3.320673 AGAAAAACACGCCAAAACCAA 57.679 38.095 0.00 0.00 0.00 3.67
279 282 4.901197 AACCAACAAACCAGGTTTTCTT 57.099 36.364 15.51 6.86 42.72 2.52
280 283 4.901197 ACCAACAAACCAGGTTTTCTTT 57.099 36.364 15.51 6.21 33.10 2.52
281 284 5.235850 ACCAACAAACCAGGTTTTCTTTT 57.764 34.783 15.51 3.77 33.10 2.27
282 285 5.626142 ACCAACAAACCAGGTTTTCTTTTT 58.374 33.333 15.51 1.38 33.10 1.94
283 286 5.703592 ACCAACAAACCAGGTTTTCTTTTTC 59.296 36.000 15.51 0.00 33.10 2.29
284 287 5.163903 CCAACAAACCAGGTTTTCTTTTTCG 60.164 40.000 15.51 4.15 33.10 3.46
285 288 5.142061 ACAAACCAGGTTTTCTTTTTCGT 57.858 34.783 15.51 4.79 33.10 3.85
286 289 4.926832 ACAAACCAGGTTTTCTTTTTCGTG 59.073 37.500 15.51 3.39 33.10 4.35
287 290 3.159353 ACCAGGTTTTCTTTTTCGTGC 57.841 42.857 0.00 0.00 0.00 5.34
288 291 2.116366 CCAGGTTTTCTTTTTCGTGCG 58.884 47.619 0.00 0.00 0.00 5.34
289 292 1.516864 CAGGTTTTCTTTTTCGTGCGC 59.483 47.619 0.00 0.00 0.00 6.09
290 293 0.850217 GGTTTTCTTTTTCGTGCGCC 59.150 50.000 4.18 0.00 0.00 6.53
291 294 1.551145 GTTTTCTTTTTCGTGCGCCA 58.449 45.000 4.18 0.00 0.00 5.69
292 295 1.516864 GTTTTCTTTTTCGTGCGCCAG 59.483 47.619 4.18 0.00 0.00 4.85
293 296 0.736053 TTTCTTTTTCGTGCGCCAGT 59.264 45.000 4.18 0.00 0.00 4.00
294 297 1.584175 TTCTTTTTCGTGCGCCAGTA 58.416 45.000 4.18 0.00 0.00 2.74
295 298 1.803334 TCTTTTTCGTGCGCCAGTAT 58.197 45.000 4.18 0.00 0.00 2.12
296 299 1.463056 TCTTTTTCGTGCGCCAGTATG 59.537 47.619 4.18 0.00 0.00 2.39
314 317 5.748402 AGTATGGCTGAAAATGATCTCACA 58.252 37.500 0.00 0.00 0.00 3.58
315 318 4.978083 ATGGCTGAAAATGATCTCACAC 57.022 40.909 0.00 0.00 0.00 3.82
316 319 2.743664 TGGCTGAAAATGATCTCACACG 59.256 45.455 0.00 0.00 0.00 4.49
317 320 3.002791 GGCTGAAAATGATCTCACACGA 58.997 45.455 0.00 0.00 0.00 4.35
318 321 3.063180 GGCTGAAAATGATCTCACACGAG 59.937 47.826 0.00 0.00 40.98 4.18
319 322 3.063180 GCTGAAAATGATCTCACACGAGG 59.937 47.826 0.00 0.00 39.95 4.63
320 323 4.498241 CTGAAAATGATCTCACACGAGGA 58.502 43.478 0.00 0.00 39.95 3.71
321 324 5.089970 TGAAAATGATCTCACACGAGGAT 57.910 39.130 0.00 0.00 39.95 3.24
322 325 5.111989 TGAAAATGATCTCACACGAGGATC 58.888 41.667 0.00 0.00 39.95 3.36
323 326 4.743057 AAATGATCTCACACGAGGATCA 57.257 40.909 7.21 7.21 39.95 2.92
324 327 3.724508 ATGATCTCACACGAGGATCAC 57.275 47.619 6.96 0.00 37.99 3.06
325 328 2.446435 TGATCTCACACGAGGATCACA 58.554 47.619 0.00 0.00 39.95 3.58
326 329 3.026694 TGATCTCACACGAGGATCACAT 58.973 45.455 0.00 0.00 39.95 3.21
327 330 4.207165 TGATCTCACACGAGGATCACATA 58.793 43.478 0.00 0.00 39.95 2.29
328 331 4.276926 TGATCTCACACGAGGATCACATAG 59.723 45.833 0.00 0.00 39.95 2.23
329 332 3.621558 TCTCACACGAGGATCACATAGT 58.378 45.455 0.00 0.00 39.95 2.12
330 333 4.017126 TCTCACACGAGGATCACATAGTT 58.983 43.478 0.00 0.00 39.95 2.24
331 334 4.462834 TCTCACACGAGGATCACATAGTTT 59.537 41.667 0.00 0.00 39.95 2.66
332 335 5.650703 TCTCACACGAGGATCACATAGTTTA 59.349 40.000 0.00 0.00 39.95 2.01
333 336 5.891451 TCACACGAGGATCACATAGTTTAG 58.109 41.667 0.00 0.00 33.17 1.85
334 337 5.417894 TCACACGAGGATCACATAGTTTAGT 59.582 40.000 0.00 0.00 33.17 2.24
335 338 5.516696 CACACGAGGATCACATAGTTTAGTG 59.483 44.000 0.00 0.00 37.10 2.74
336 339 5.043903 CACGAGGATCACATAGTTTAGTGG 58.956 45.833 0.00 0.00 36.43 4.00
337 340 4.051922 CGAGGATCACATAGTTTAGTGGC 58.948 47.826 0.00 0.00 36.43 5.01
341 344 5.882557 AGGATCACATAGTTTAGTGGCTTTG 59.117 40.000 0.00 0.00 36.43 2.77
360 363 5.393027 GCTTTGAATCCTTTTCCGCTATGAA 60.393 40.000 0.00 0.00 0.00 2.57
363 366 5.436175 TGAATCCTTTTCCGCTATGAATCA 58.564 37.500 0.00 0.00 0.00 2.57
369 372 4.944962 TTTCCGCTATGAATCAGTGTTG 57.055 40.909 0.00 0.00 0.00 3.33
374 377 4.033019 CGCTATGAATCAGTGTTGCATTG 58.967 43.478 0.00 0.26 0.00 2.82
378 381 4.915158 TGAATCAGTGTTGCATTGTTCA 57.085 36.364 0.00 0.00 0.00 3.18
382 385 2.098934 TCAGTGTTGCATTGTTCACACC 59.901 45.455 12.32 0.00 33.84 4.16
386 389 3.306703 GTGTTGCATTGTTCACACCAAAG 59.693 43.478 5.91 0.00 0.00 2.77
387 390 3.056250 TGTTGCATTGTTCACACCAAAGT 60.056 39.130 0.00 0.00 0.00 2.66
396 399 4.985409 TGTTCACACCAAAGTTTTGTGTTC 59.015 37.500 19.75 14.16 41.22 3.18
397 400 4.181309 TCACACCAAAGTTTTGTGTTCC 57.819 40.909 19.75 0.00 41.22 3.62
401 404 1.566404 CAAAGTTTTGTGTTCCCGCC 58.434 50.000 0.00 0.00 33.59 6.13
404 407 0.822121 AGTTTTGTGTTCCCGCCTCC 60.822 55.000 0.00 0.00 0.00 4.30
407 410 1.756408 TTTGTGTTCCCGCCTCCGTA 61.756 55.000 0.00 0.00 0.00 4.02
410 413 3.384532 GTTCCCGCCTCCGTACCA 61.385 66.667 0.00 0.00 0.00 3.25
411 414 2.364579 TTCCCGCCTCCGTACCAT 60.365 61.111 0.00 0.00 0.00 3.55
413 416 1.555477 TTCCCGCCTCCGTACCATTT 61.555 55.000 0.00 0.00 0.00 2.32
414 417 1.078001 CCCGCCTCCGTACCATTTT 60.078 57.895 0.00 0.00 0.00 1.82
415 418 1.093496 CCCGCCTCCGTACCATTTTC 61.093 60.000 0.00 0.00 0.00 2.29
416 419 0.391927 CCGCCTCCGTACCATTTTCA 60.392 55.000 0.00 0.00 0.00 2.69
417 420 1.663695 CGCCTCCGTACCATTTTCAT 58.336 50.000 0.00 0.00 0.00 2.57
418 421 1.597663 CGCCTCCGTACCATTTTCATC 59.402 52.381 0.00 0.00 0.00 2.92
420 423 2.421529 GCCTCCGTACCATTTTCATCCT 60.422 50.000 0.00 0.00 0.00 3.24
421 424 3.181458 GCCTCCGTACCATTTTCATCCTA 60.181 47.826 0.00 0.00 0.00 2.94
422 425 4.377897 CCTCCGTACCATTTTCATCCTAC 58.622 47.826 0.00 0.00 0.00 3.18
423 426 4.101119 CCTCCGTACCATTTTCATCCTACT 59.899 45.833 0.00 0.00 0.00 2.57
424 427 5.396436 CCTCCGTACCATTTTCATCCTACTT 60.396 44.000 0.00 0.00 0.00 2.24
425 428 5.667466 TCCGTACCATTTTCATCCTACTTC 58.333 41.667 0.00 0.00 0.00 3.01
427 430 6.070424 TCCGTACCATTTTCATCCTACTTCTT 60.070 38.462 0.00 0.00 0.00 2.52
430 433 6.824305 ACCATTTTCATCCTACTTCTTGTG 57.176 37.500 0.00 0.00 0.00 3.33
431 434 5.183904 ACCATTTTCATCCTACTTCTTGTGC 59.816 40.000 0.00 0.00 0.00 4.57
433 436 6.127535 CCATTTTCATCCTACTTCTTGTGCAT 60.128 38.462 0.00 0.00 0.00 3.96
436 439 4.763073 TCATCCTACTTCTTGTGCATGAG 58.237 43.478 0.00 0.00 0.00 2.90
439 442 3.055819 TCCTACTTCTTGTGCATGAGTCC 60.056 47.826 0.00 0.00 0.00 3.85
441 444 2.498167 ACTTCTTGTGCATGAGTCCAC 58.502 47.619 0.00 0.00 0.00 4.02
443 446 1.882912 TCTTGTGCATGAGTCCACAC 58.117 50.000 0.00 0.00 41.26 3.82
444 447 1.140652 TCTTGTGCATGAGTCCACACA 59.859 47.619 0.00 6.02 41.26 3.72
445 448 3.796764 TGTGCATGAGTCCACACAA 57.203 47.368 0.00 0.00 39.91 3.33
450 453 4.582240 TGTGCATGAGTCCACACAAAATTA 59.418 37.500 0.00 0.00 39.91 1.40
451 454 4.917415 GTGCATGAGTCCACACAAAATTAC 59.083 41.667 0.00 0.00 33.23 1.89
452 455 4.158384 GCATGAGTCCACACAAAATTACG 58.842 43.478 0.00 0.00 0.00 3.18
455 458 5.163302 TGAGTCCACACAAAATTACGTTG 57.837 39.130 0.00 0.00 0.00 4.10
456 459 4.636648 TGAGTCCACACAAAATTACGTTGT 59.363 37.500 0.00 0.00 39.79 3.32
700 722 7.640597 CATGCATGGATATGTATGGAGAAAT 57.359 36.000 19.40 0.00 46.98 2.17
701 723 7.480810 CATGCATGGATATGTATGGAGAAATG 58.519 38.462 19.40 0.00 46.98 2.32
702 724 5.416639 TGCATGGATATGTATGGAGAAATGC 59.583 40.000 0.00 0.00 36.65 3.56
703 725 5.416639 GCATGGATATGTATGGAGAAATGCA 59.583 40.000 0.00 0.00 37.29 3.96
704 726 6.096423 GCATGGATATGTATGGAGAAATGCAT 59.904 38.462 0.00 0.00 37.29 3.96
705 727 7.480810 CATGGATATGTATGGAGAAATGCATG 58.519 38.462 0.00 0.00 37.02 4.06
719 741 6.545567 AGAAATGCATGGATATGTATGGACA 58.454 36.000 0.00 0.00 39.22 4.02
724 746 5.222089 TGCATGGATATGTATGGACAATGGA 60.222 40.000 0.00 0.00 39.59 3.41
725 747 5.356190 GCATGGATATGTATGGACAATGGAG 59.644 44.000 0.00 0.00 39.59 3.86
726 748 6.479006 CATGGATATGTATGGACAATGGAGT 58.521 40.000 0.00 0.00 39.59 3.85
727 749 7.623630 CATGGATATGTATGGACAATGGAGTA 58.376 38.462 0.00 0.00 39.59 2.59
728 750 7.625498 TGGATATGTATGGACAATGGAGTAA 57.375 36.000 0.00 0.00 39.59 2.24
729 751 7.450074 TGGATATGTATGGACAATGGAGTAAC 58.550 38.462 0.00 0.00 39.59 2.50
730 752 6.590292 GGATATGTATGGACAATGGAGTAACG 59.410 42.308 0.00 0.00 39.59 3.18
731 753 3.527533 TGTATGGACAATGGAGTAACGC 58.472 45.455 0.00 0.00 30.68 4.84
732 754 2.779755 ATGGACAATGGAGTAACGCA 57.220 45.000 0.00 0.00 0.00 5.24
733 755 2.552599 TGGACAATGGAGTAACGCAA 57.447 45.000 0.00 0.00 0.00 4.85
734 756 3.066291 TGGACAATGGAGTAACGCAAT 57.934 42.857 0.00 0.00 0.00 3.56
811 838 2.595463 CAGCTGGTGGTGTGGTGG 60.595 66.667 5.57 0.00 36.97 4.61
812 839 3.096495 AGCTGGTGGTGTGGTGGT 61.096 61.111 0.00 0.00 0.00 4.16
814 841 2.203337 CTGGTGGTGTGGTGGTGG 60.203 66.667 0.00 0.00 0.00 4.61
845 872 0.673956 GGTCACTTTTCTCCCTCCGC 60.674 60.000 0.00 0.00 0.00 5.54
848 875 2.272471 CTTTTCTCCCTCCGCCCC 59.728 66.667 0.00 0.00 0.00 5.80
876 903 5.508994 CCCAACAAAACTAATTCCACTCCAC 60.509 44.000 0.00 0.00 0.00 4.02
877 904 5.508994 CCAACAAAACTAATTCCACTCCACC 60.509 44.000 0.00 0.00 0.00 4.61
878 905 4.798882 ACAAAACTAATTCCACTCCACCA 58.201 39.130 0.00 0.00 0.00 4.17
879 906 4.827284 ACAAAACTAATTCCACTCCACCAG 59.173 41.667 0.00 0.00 0.00 4.00
880 907 3.721087 AACTAATTCCACTCCACCAGG 57.279 47.619 0.00 0.00 0.00 4.45
909 936 2.134346 CAGCCAAACCAAATCAAACCG 58.866 47.619 0.00 0.00 0.00 4.44
1063 1111 1.820481 GAGGACGACGAGGAGGAGG 60.820 68.421 0.00 0.00 0.00 4.30
1064 1112 2.254737 GAGGACGACGAGGAGGAGGA 62.255 65.000 0.00 0.00 0.00 3.71
1065 1113 2.114051 GGACGACGAGGAGGAGGAC 61.114 68.421 0.00 0.00 0.00 3.85
1254 1302 2.307098 CTCCCCTCATCTTGGTTCTGTT 59.693 50.000 0.00 0.00 0.00 3.16
1256 1304 3.084786 CCCCTCATCTTGGTTCTGTTTC 58.915 50.000 0.00 0.00 0.00 2.78
1290 1339 2.406002 TTTTCTTCGCCCGCCCTTCT 62.406 55.000 0.00 0.00 0.00 2.85
1417 1467 1.182385 CGCTTTGCCCCTTTTACCCA 61.182 55.000 0.00 0.00 0.00 4.51
1434 1484 1.676615 CCCATGTTCCATTGCTTTGGC 60.677 52.381 1.03 0.00 36.66 4.52
1450 1500 1.533625 TGGCTCTGTTCAAATTCGGG 58.466 50.000 0.00 0.00 0.00 5.14
1454 1504 0.958382 TCTGTTCAAATTCGGGCCGG 60.958 55.000 27.98 9.72 0.00 6.13
1521 1571 5.478407 TCGTGATCTCTGTTGCAAAGATTA 58.522 37.500 12.27 6.75 30.04 1.75
1529 1579 6.995686 TCTCTGTTGCAAAGATTACAGGTTTA 59.004 34.615 12.72 0.00 38.75 2.01
1531 1581 8.177119 TCTGTTGCAAAGATTACAGGTTTATT 57.823 30.769 12.72 0.00 38.75 1.40
1533 1583 8.177119 TGTTGCAAAGATTACAGGTTTATTCT 57.823 30.769 0.00 0.00 0.00 2.40
1534 1584 8.296713 TGTTGCAAAGATTACAGGTTTATTCTC 58.703 33.333 0.00 0.00 0.00 2.87
1563 1619 3.131400 GTGCAAACTGGGACCAAAACTAA 59.869 43.478 0.00 0.00 0.00 2.24
1571 1627 7.949690 ACTGGGACCAAAACTAATATTTACC 57.050 36.000 0.00 0.00 0.00 2.85
1579 1635 6.824704 CCAAAACTAATATTTACCGTCCTCCA 59.175 38.462 0.00 0.00 0.00 3.86
1603 1660 8.657074 CATCGGTAATGGAACTCTGTATTTTA 57.343 34.615 0.00 0.00 0.00 1.52
1606 1663 6.019318 CGGTAATGGAACTCTGTATTTTACGG 60.019 42.308 0.00 0.00 36.38 4.02
1608 1665 7.335171 GGTAATGGAACTCTGTATTTTACGGTT 59.665 37.037 0.00 0.00 36.45 4.44
1617 1674 5.527951 TCTGTATTTTACGGTTTGTGCAAGA 59.472 36.000 0.00 0.00 36.45 3.02
1624 1683 2.946329 ACGGTTTGTGCAAGACATGTTA 59.054 40.909 0.00 0.00 33.40 2.41
1625 1684 3.568007 ACGGTTTGTGCAAGACATGTTAT 59.432 39.130 0.00 0.00 33.40 1.89
1637 1696 7.011016 TGCAAGACATGTTATTAACTGGATACG 59.989 37.037 0.00 0.00 42.51 3.06
2034 2093 1.829523 TAAACCCGTCCAAGGACCCG 61.830 60.000 13.35 6.22 41.76 5.28
2079 2138 0.253347 TCAAGAGGCCAGAGGGGAAT 60.253 55.000 5.01 0.00 40.01 3.01
2094 2153 1.447140 GAATCAGTACCGCACGCCA 60.447 57.895 0.00 0.00 0.00 5.69
2095 2154 1.693083 GAATCAGTACCGCACGCCAC 61.693 60.000 0.00 0.00 0.00 5.01
2352 2411 5.685075 CGGTTCTGGGTATTCTTATTCTGCT 60.685 44.000 0.00 0.00 0.00 4.24
2517 2580 7.335422 GCTTATACTGGTAGCATTAGCAATGAT 59.665 37.037 11.52 8.40 45.49 2.45
2522 2585 4.955450 TGGTAGCATTAGCAATGATGGTTT 59.045 37.500 11.52 0.00 45.49 3.27
2575 2653 7.936584 TGGGTTTTCTAACATTAGTCAAAGTG 58.063 34.615 0.00 0.00 35.92 3.16
2576 2654 7.558444 TGGGTTTTCTAACATTAGTCAAAGTGT 59.442 33.333 0.00 0.00 35.92 3.55
2577 2655 8.074370 GGGTTTTCTAACATTAGTCAAAGTGTC 58.926 37.037 0.00 0.00 35.92 3.67
2578 2656 8.617809 GGTTTTCTAACATTAGTCAAAGTGTCA 58.382 33.333 0.00 0.00 35.92 3.58
2607 2685 1.338020 CCATTTTCCTTATGCCGAGGC 59.662 52.381 7.26 7.26 42.35 4.70
2611 2689 2.923426 TTCCTTATGCCGAGGCTGCG 62.923 60.000 15.75 0.00 42.51 5.18
2681 2759 6.415867 CGATTGAGTCATGGCAATTGATAAAC 59.584 38.462 10.34 0.13 37.86 2.01
3085 3165 5.337578 AATACACTGGCACAAAACAAAGT 57.662 34.783 0.00 0.00 38.70 2.66
3089 3169 2.098443 ACTGGCACAAAACAAAGTACCG 59.902 45.455 0.00 0.00 38.70 4.02
3104 3184 2.421424 AGTACCGAGTACCGACAATGAC 59.579 50.000 9.65 0.00 39.58 3.06
3165 3256 5.593679 TGTTATACTCTTACCTGCTGGAC 57.406 43.478 17.64 0.29 37.04 4.02
3178 3269 1.276421 TGCTGGACTGTCCTCTAAAGC 59.724 52.381 26.03 24.00 37.46 3.51
3179 3270 1.737363 GCTGGACTGTCCTCTAAAGCG 60.737 57.143 26.03 6.91 37.46 4.68
3180 3271 0.895530 TGGACTGTCCTCTAAAGCGG 59.104 55.000 26.03 0.00 37.46 5.52
3181 3272 1.183549 GGACTGTCCTCTAAAGCGGA 58.816 55.000 19.53 0.00 32.53 5.54
3182 3273 1.757699 GGACTGTCCTCTAAAGCGGAT 59.242 52.381 19.53 0.00 30.83 4.18
3183 3274 2.223852 GGACTGTCCTCTAAAGCGGATC 60.224 54.545 19.53 0.00 30.83 3.36
3184 3275 2.427453 GACTGTCCTCTAAAGCGGATCA 59.573 50.000 0.00 0.00 30.83 2.92
3185 3276 2.166664 ACTGTCCTCTAAAGCGGATCAC 59.833 50.000 0.00 0.00 30.83 3.06
3186 3277 2.166459 CTGTCCTCTAAAGCGGATCACA 59.834 50.000 0.00 0.00 30.83 3.58
3187 3278 2.094182 TGTCCTCTAAAGCGGATCACAC 60.094 50.000 0.00 0.00 30.83 3.82
3188 3279 2.094182 GTCCTCTAAAGCGGATCACACA 60.094 50.000 0.00 0.00 30.83 3.72
3320 3443 2.744202 CAAAGTCTACAGTGGTGGCATC 59.256 50.000 0.00 0.00 0.00 3.91
3321 3444 1.644509 AGTCTACAGTGGTGGCATCA 58.355 50.000 0.00 0.00 0.00 3.07
3322 3445 1.276421 AGTCTACAGTGGTGGCATCAC 59.724 52.381 23.14 23.14 42.91 3.06
3323 3446 1.001974 GTCTACAGTGGTGGCATCACA 59.998 52.381 30.81 11.23 45.32 3.58
3324 3447 1.908619 TCTACAGTGGTGGCATCACAT 59.091 47.619 30.81 20.82 45.32 3.21
3325 3448 2.093500 TCTACAGTGGTGGCATCACATC 60.093 50.000 30.81 6.18 45.32 3.06
3388 3519 3.173151 TGACTCTTTGCAGGATCACCTA 58.827 45.455 0.00 0.00 45.94 3.08
3406 3537 4.036518 ACCTAGCTCTGATGATGGAAACT 58.963 43.478 0.00 0.00 0.00 2.66
3409 3540 4.139859 AGCTCTGATGATGGAAACTCTG 57.860 45.455 0.00 0.00 0.00 3.35
3430 3561 3.054361 TGGGAAAGATGCCTAAGAAGGTC 60.054 47.826 0.00 0.00 45.64 3.85
3432 3563 3.546724 GAAAGATGCCTAAGAAGGTCCC 58.453 50.000 0.00 0.00 45.64 4.46
3433 3564 2.577772 AGATGCCTAAGAAGGTCCCT 57.422 50.000 0.00 0.00 45.64 4.20
3439 3570 4.627015 TGCCTAAGAAGGTCCCTACAATA 58.373 43.478 0.00 0.00 45.64 1.90
3443 3574 6.043358 GCCTAAGAAGGTCCCTACAATATCTT 59.957 42.308 2.31 2.31 45.64 2.40
3444 3575 7.445945 CCTAAGAAGGTCCCTACAATATCTTG 58.554 42.308 6.13 0.00 38.19 3.02
3447 3578 7.989947 AGAAGGTCCCTACAATATCTTGTAA 57.010 36.000 5.34 0.00 44.95 2.41
3448 3579 7.793036 AGAAGGTCCCTACAATATCTTGTAAC 58.207 38.462 5.34 1.69 44.95 2.50
3449 3580 7.624077 AGAAGGTCCCTACAATATCTTGTAACT 59.376 37.037 5.34 0.00 44.95 2.24
3450 3581 7.362802 AGGTCCCTACAATATCTTGTAACTC 57.637 40.000 5.34 0.00 44.95 3.01
3452 3583 6.464039 GGTCCCTACAATATCTTGTAACTCCC 60.464 46.154 5.34 1.18 44.95 4.30
3453 3584 6.326843 GTCCCTACAATATCTTGTAACTCCCT 59.673 42.308 5.34 0.00 44.95 4.20
3463 3594 5.690865 TCTTGTAACTCCCTTTGTCATGTT 58.309 37.500 0.00 0.00 0.00 2.71
3465 3596 4.787551 TGTAACTCCCTTTGTCATGTTGT 58.212 39.130 0.00 0.00 0.00 3.32
3467 3598 3.864789 ACTCCCTTTGTCATGTTGTCT 57.135 42.857 0.00 0.00 0.00 3.41
3468 3599 4.974645 ACTCCCTTTGTCATGTTGTCTA 57.025 40.909 0.00 0.00 0.00 2.59
3469 3600 5.304686 ACTCCCTTTGTCATGTTGTCTAA 57.695 39.130 0.00 0.00 0.00 2.10
3471 3602 5.940470 ACTCCCTTTGTCATGTTGTCTAATC 59.060 40.000 0.00 0.00 0.00 1.75
3472 3603 5.253330 TCCCTTTGTCATGTTGTCTAATCC 58.747 41.667 0.00 0.00 0.00 3.01
3473 3604 4.399303 CCCTTTGTCATGTTGTCTAATCCC 59.601 45.833 0.00 0.00 0.00 3.85
3474 3605 5.009631 CCTTTGTCATGTTGTCTAATCCCA 58.990 41.667 0.00 0.00 0.00 4.37
3475 3606 5.476599 CCTTTGTCATGTTGTCTAATCCCAA 59.523 40.000 0.00 0.00 0.00 4.12
3476 3607 6.015519 CCTTTGTCATGTTGTCTAATCCCAAA 60.016 38.462 0.00 0.00 0.00 3.28
3478 3609 6.513806 TGTCATGTTGTCTAATCCCAAATG 57.486 37.500 0.00 0.00 0.00 2.32
3479 3610 5.105797 TGTCATGTTGTCTAATCCCAAATGC 60.106 40.000 0.00 0.00 0.00 3.56
3480 3611 4.402155 TCATGTTGTCTAATCCCAAATGCC 59.598 41.667 0.00 0.00 0.00 4.40
3489 3622 6.879458 GTCTAATCCCAAATGCCGTATCTAAT 59.121 38.462 0.00 0.00 0.00 1.73
3591 3724 2.222227 AAAGAATGAGGTTCTGGCCC 57.778 50.000 0.00 0.00 46.39 5.80
3594 3727 0.106967 GAATGAGGTTCTGGCCCCTC 60.107 60.000 16.63 16.63 46.20 4.30
3619 3752 1.366679 CGTGCTAGTCGAGAGGTACA 58.633 55.000 0.00 0.00 0.00 2.90
3620 3753 1.736126 CGTGCTAGTCGAGAGGTACAA 59.264 52.381 0.00 0.00 0.00 2.41
3621 3754 2.355132 CGTGCTAGTCGAGAGGTACAAT 59.645 50.000 0.00 0.00 0.00 2.71
3684 3817 3.466836 CCCGATTCTCGATTTTGATCCA 58.533 45.455 0.00 0.00 43.74 3.41
3764 3903 5.892119 TCAACCAAACCACCAAGTAATAACA 59.108 36.000 0.00 0.00 0.00 2.41
3766 3905 6.339587 ACCAAACCACCAAGTAATAACATG 57.660 37.500 0.00 0.00 0.00 3.21
3781 3920 3.423539 AACATGAGAAGCAGCCTAACA 57.576 42.857 0.00 0.00 0.00 2.41
3797 3940 6.036517 CAGCCTAACAGACAATAGCTTTACAG 59.963 42.308 0.00 0.00 0.00 2.74
3829 3972 0.872021 GTTAGACATCAGCTCCGGCG 60.872 60.000 0.00 0.00 44.37 6.46
3874 4017 0.727398 GAACCATCTGCAGCGGTAAC 59.273 55.000 23.18 17.27 31.12 2.50
3917 4060 2.315925 AATCTTCGTGGCATCATCGT 57.684 45.000 0.00 0.00 0.00 3.73
3945 4090 3.562141 TGATCGTGTGTTTTTGGTGTAGG 59.438 43.478 0.00 0.00 0.00 3.18
3947 4092 2.018515 CGTGTGTTTTTGGTGTAGGGT 58.981 47.619 0.00 0.00 0.00 4.34
3951 4096 1.751924 TGTTTTTGGTGTAGGGTGTGC 59.248 47.619 0.00 0.00 0.00 4.57
3952 4097 2.028876 GTTTTTGGTGTAGGGTGTGCT 58.971 47.619 0.00 0.00 0.00 4.40
3953 4098 1.686355 TTTTGGTGTAGGGTGTGCTG 58.314 50.000 0.00 0.00 0.00 4.41
3955 4100 0.179032 TTGGTGTAGGGTGTGCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
3957 4102 1.966451 GTGTAGGGTGTGCTGTGGC 60.966 63.158 0.00 0.00 39.26 5.01
3958 4103 2.359975 GTAGGGTGTGCTGTGGCC 60.360 66.667 0.00 0.00 37.74 5.36
3959 4104 2.529136 TAGGGTGTGCTGTGGCCT 60.529 61.111 3.32 0.00 37.74 5.19
3960 4105 2.153401 TAGGGTGTGCTGTGGCCTT 61.153 57.895 3.32 0.00 37.74 4.35
4053 4213 0.107654 GGTGGTAGTGTGATCTGGCC 60.108 60.000 0.00 0.00 0.00 5.36
4054 4214 0.905357 GTGGTAGTGTGATCTGGCCT 59.095 55.000 3.32 0.00 0.00 5.19
4068 4228 6.095440 GTGATCTGGCCTTCAGCTTTATTTTA 59.905 38.462 3.32 0.00 43.06 1.52
4281 4448 2.758089 GCAGTGATTCCAGCTGCGG 61.758 63.158 8.66 0.00 44.64 5.69
4303 4470 5.363101 GGCCCCTACTGTTTACATAAGTAC 58.637 45.833 0.00 0.00 0.00 2.73
4304 4471 5.104817 GGCCCCTACTGTTTACATAAGTACA 60.105 44.000 0.00 0.00 0.00 2.90
4305 4472 6.047231 GCCCCTACTGTTTACATAAGTACAG 58.953 44.000 0.00 0.00 39.27 2.74
4306 4473 6.351626 GCCCCTACTGTTTACATAAGTACAGT 60.352 42.308 10.54 10.54 45.09 3.55
4307 4474 7.039882 CCCCTACTGTTTACATAAGTACAGTG 58.960 42.308 14.11 6.71 43.71 3.66
4337 4504 5.131142 AGAATCTCCAACGAGTCCCATAAAT 59.869 40.000 0.00 0.00 37.40 1.40
4430 4600 8.961092 CATCAGATTTTTAAGCATGGTAAATCG 58.039 33.333 18.78 15.28 39.17 3.34
4435 4605 4.868450 TTAAGCATGGTAAATCGAACGG 57.132 40.909 0.00 0.00 0.00 4.44
4450 4620 2.661195 CGAACGGTTTTCATGGCAAATC 59.339 45.455 0.00 0.00 0.00 2.17
4474 4644 4.105486 CGTAGCATGACAAATCTCTTCGA 58.895 43.478 0.00 0.00 0.00 3.71
4477 4647 3.931468 AGCATGACAAATCTCTTCGACAG 59.069 43.478 0.00 0.00 0.00 3.51
4557 4733 4.963318 TCAGATTTATAGCAGGGTCCTG 57.037 45.455 12.42 12.42 46.15 3.86
4600 5138 5.647225 TGGTTTTATGGGGTGTTCGTATAAC 59.353 40.000 0.00 0.00 0.00 1.89
4628 5166 1.332375 TGGTTTGCTTGTACAACTCGC 59.668 47.619 3.59 7.77 0.00 5.03
4639 5177 4.435425 TGTACAACTCGCTTGTGTAGTTT 58.565 39.130 0.00 0.00 43.38 2.66
4650 5188 4.083802 GCTTGTGTAGTTTAGCTGTCAAGG 60.084 45.833 0.00 0.00 34.45 3.61
4654 5192 6.584488 TGTGTAGTTTAGCTGTCAAGGTTAA 58.416 36.000 0.00 0.00 35.29 2.01
4655 5193 7.049133 TGTGTAGTTTAGCTGTCAAGGTTAAA 58.951 34.615 0.00 0.00 35.29 1.52
4656 5194 7.553402 TGTGTAGTTTAGCTGTCAAGGTTAAAA 59.447 33.333 0.00 0.00 35.29 1.52
4657 5195 8.565416 GTGTAGTTTAGCTGTCAAGGTTAAAAT 58.435 33.333 0.00 0.00 35.29 1.82
4658 5196 9.127277 TGTAGTTTAGCTGTCAAGGTTAAAATT 57.873 29.630 0.00 0.00 35.29 1.82
4659 5197 9.394477 GTAGTTTAGCTGTCAAGGTTAAAATTG 57.606 33.333 0.00 0.00 35.29 2.32
4660 5198 6.923508 AGTTTAGCTGTCAAGGTTAAAATTGC 59.076 34.615 0.00 0.00 35.29 3.56
4661 5199 4.935352 AGCTGTCAAGGTTAAAATTGCA 57.065 36.364 0.00 0.00 0.00 4.08
4662 5200 4.620982 AGCTGTCAAGGTTAAAATTGCAC 58.379 39.130 0.00 0.00 0.00 4.57
4663 5201 4.099266 AGCTGTCAAGGTTAAAATTGCACA 59.901 37.500 0.00 2.83 0.00 4.57
4664 5202 4.990426 GCTGTCAAGGTTAAAATTGCACAT 59.010 37.500 0.00 0.00 0.00 3.21
4665 5203 5.466393 GCTGTCAAGGTTAAAATTGCACATT 59.534 36.000 0.00 0.00 0.00 2.71
4666 5204 6.644592 GCTGTCAAGGTTAAAATTGCACATTA 59.355 34.615 0.00 0.00 0.00 1.90
4667 5205 7.359181 GCTGTCAAGGTTAAAATTGCACATTAC 60.359 37.037 0.00 0.00 0.00 1.89
4668 5206 6.926272 TGTCAAGGTTAAAATTGCACATTACC 59.074 34.615 0.00 0.00 0.00 2.85
4669 5207 7.151976 GTCAAGGTTAAAATTGCACATTACCT 58.848 34.615 0.00 0.00 0.00 3.08
4670 5208 7.655732 GTCAAGGTTAAAATTGCACATTACCTT 59.344 33.333 14.78 14.78 34.59 3.50
4671 5209 8.207545 TCAAGGTTAAAATTGCACATTACCTTT 58.792 29.630 16.42 0.83 32.26 3.11
4672 5210 8.835439 CAAGGTTAAAATTGCACATTACCTTTT 58.165 29.630 16.42 6.32 32.26 2.27
4673 5211 8.972458 AGGTTAAAATTGCACATTACCTTTTT 57.028 26.923 0.00 0.00 0.00 1.94
4722 5260 9.712305 TTACAAATTGGGTAATGTTATTTGGTG 57.288 29.630 0.00 0.00 39.37 4.17
4723 5261 7.164803 ACAAATTGGGTAATGTTATTTGGTGG 58.835 34.615 0.00 0.00 39.37 4.61
4724 5262 7.016661 ACAAATTGGGTAATGTTATTTGGTGGA 59.983 33.333 0.00 0.00 39.37 4.02
4725 5263 5.986501 TTGGGTAATGTTATTTGGTGGAC 57.013 39.130 0.00 0.00 0.00 4.02
4726 5264 4.999310 TGGGTAATGTTATTTGGTGGACA 58.001 39.130 0.00 0.00 0.00 4.02
4727 5265 5.584913 TGGGTAATGTTATTTGGTGGACAT 58.415 37.500 0.00 0.00 34.41 3.06
4728 5266 6.019748 TGGGTAATGTTATTTGGTGGACATT 58.980 36.000 5.95 5.95 43.11 2.71
4729 5267 6.153680 TGGGTAATGTTATTTGGTGGACATTC 59.846 38.462 4.08 0.00 40.68 2.67
4730 5268 6.262601 GGTAATGTTATTTGGTGGACATTCG 58.737 40.000 4.08 0.00 40.68 3.34
4731 5269 3.840890 TGTTATTTGGTGGACATTCGC 57.159 42.857 0.00 0.00 0.00 4.70
4732 5270 3.417101 TGTTATTTGGTGGACATTCGCT 58.583 40.909 0.00 0.00 0.00 4.93
4733 5271 3.190327 TGTTATTTGGTGGACATTCGCTG 59.810 43.478 0.00 0.00 0.00 5.18
4734 5272 1.176527 ATTTGGTGGACATTCGCTGG 58.823 50.000 0.00 0.00 0.00 4.85
4735 5273 0.893270 TTTGGTGGACATTCGCTGGG 60.893 55.000 0.00 0.00 0.00 4.45
4736 5274 2.438434 GGTGGACATTCGCTGGGG 60.438 66.667 0.00 0.00 0.00 4.96
4737 5275 2.351276 GTGGACATTCGCTGGGGT 59.649 61.111 0.00 0.00 0.00 4.95
4738 5276 2.040544 GTGGACATTCGCTGGGGTG 61.041 63.158 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.157471 ACTCATTTACGTCCCCCTAAAAGTAT 59.843 38.462 0.00 0.00 0.00 2.12
1 2 5.484998 ACTCATTTACGTCCCCCTAAAAGTA 59.515 40.000 0.00 0.00 0.00 2.24
2 3 4.287845 ACTCATTTACGTCCCCCTAAAAGT 59.712 41.667 0.00 0.00 0.00 2.66
3 4 4.840271 ACTCATTTACGTCCCCCTAAAAG 58.160 43.478 0.00 0.00 0.00 2.27
4 5 4.914177 ACTCATTTACGTCCCCCTAAAA 57.086 40.909 0.00 0.00 0.00 1.52
5 6 4.142182 CGTACTCATTTACGTCCCCCTAAA 60.142 45.833 0.00 0.00 40.01 1.85
6 7 3.381272 CGTACTCATTTACGTCCCCCTAA 59.619 47.826 0.00 0.00 40.01 2.69
7 8 2.951642 CGTACTCATTTACGTCCCCCTA 59.048 50.000 0.00 0.00 40.01 3.53
8 9 1.753073 CGTACTCATTTACGTCCCCCT 59.247 52.381 0.00 0.00 40.01 4.79
9 10 2.214387 CGTACTCATTTACGTCCCCC 57.786 55.000 0.00 0.00 40.01 5.40
91 92 8.572151 GTGTCCGTTTTTGTTTCATATATTTCG 58.428 33.333 0.00 0.00 0.00 3.46
99 100 5.066968 ACTTGTGTCCGTTTTTGTTTCAT 57.933 34.783 0.00 0.00 0.00 2.57
100 101 4.506886 ACTTGTGTCCGTTTTTGTTTCA 57.493 36.364 0.00 0.00 0.00 2.69
106 107 2.223317 GGCGTTACTTGTGTCCGTTTTT 60.223 45.455 0.00 0.00 0.00 1.94
116 117 5.678132 AATTTACTTTCGGCGTTACTTGT 57.322 34.783 6.85 1.62 0.00 3.16
126 127 7.247728 TGAATTCGATCCAAATTTACTTTCGG 58.752 34.615 0.04 0.00 0.00 4.30
127 128 8.667987 TTGAATTCGATCCAAATTTACTTTCG 57.332 30.769 0.04 0.00 0.00 3.46
140 141 9.915629 ATATCTGTACTACTTTGAATTCGATCC 57.084 33.333 0.04 0.00 0.00 3.36
208 209 7.583040 CGTTTTAGTTTTCTCTTCTCCTTTTCG 59.417 37.037 0.00 0.00 0.00 3.46
220 223 9.498307 TTCTTTTCATCACGTTTTAGTTTTCTC 57.502 29.630 0.00 0.00 0.00 2.87
234 237 4.109050 TGGCGTGTTTTTCTTTTCATCAC 58.891 39.130 0.00 0.00 0.00 3.06
240 243 4.065789 TGGTTTTGGCGTGTTTTTCTTTT 58.934 34.783 0.00 0.00 0.00 2.27
244 247 2.737252 TGTTGGTTTTGGCGTGTTTTTC 59.263 40.909 0.00 0.00 0.00 2.29
245 248 2.767505 TGTTGGTTTTGGCGTGTTTTT 58.232 38.095 0.00 0.00 0.00 1.94
246 249 2.457366 TGTTGGTTTTGGCGTGTTTT 57.543 40.000 0.00 0.00 0.00 2.43
247 250 2.457366 TTGTTGGTTTTGGCGTGTTT 57.543 40.000 0.00 0.00 0.00 2.83
263 266 4.926832 CACGAAAAAGAAAACCTGGTTTGT 59.073 37.500 24.47 14.58 35.80 2.83
277 280 1.465689 CCATACTGGCGCACGAAAAAG 60.466 52.381 10.83 0.00 0.00 2.27
278 281 0.519519 CCATACTGGCGCACGAAAAA 59.480 50.000 10.83 0.00 0.00 1.94
279 282 2.167161 CCATACTGGCGCACGAAAA 58.833 52.632 10.83 0.00 0.00 2.29
280 283 3.883462 CCATACTGGCGCACGAAA 58.117 55.556 10.83 0.00 0.00 3.46
291 294 5.587844 GTGTGAGATCATTTTCAGCCATACT 59.412 40.000 0.00 0.00 0.00 2.12
292 295 5.503031 CGTGTGAGATCATTTTCAGCCATAC 60.503 44.000 0.00 0.00 0.00 2.39
293 296 4.571984 CGTGTGAGATCATTTTCAGCCATA 59.428 41.667 0.00 0.00 0.00 2.74
294 297 3.376234 CGTGTGAGATCATTTTCAGCCAT 59.624 43.478 0.00 0.00 0.00 4.40
295 298 2.743664 CGTGTGAGATCATTTTCAGCCA 59.256 45.455 0.00 0.00 0.00 4.75
296 299 3.002791 TCGTGTGAGATCATTTTCAGCC 58.997 45.455 0.00 0.00 0.00 4.85
297 300 3.063180 CCTCGTGTGAGATCATTTTCAGC 59.937 47.826 0.00 0.00 45.57 4.26
298 301 4.498241 TCCTCGTGTGAGATCATTTTCAG 58.502 43.478 0.00 0.00 45.57 3.02
299 302 4.535526 TCCTCGTGTGAGATCATTTTCA 57.464 40.909 0.00 0.00 45.57 2.69
300 303 5.006165 GTGATCCTCGTGTGAGATCATTTTC 59.994 44.000 5.32 0.00 45.57 2.29
301 304 4.872691 GTGATCCTCGTGTGAGATCATTTT 59.127 41.667 5.32 0.00 45.57 1.82
302 305 4.081476 TGTGATCCTCGTGTGAGATCATTT 60.081 41.667 5.32 0.00 45.57 2.32
303 306 3.448660 TGTGATCCTCGTGTGAGATCATT 59.551 43.478 5.32 0.00 45.57 2.57
304 307 3.026694 TGTGATCCTCGTGTGAGATCAT 58.973 45.455 5.32 0.00 45.57 2.45
305 308 2.446435 TGTGATCCTCGTGTGAGATCA 58.554 47.619 0.00 0.00 45.57 2.92
306 309 3.724508 ATGTGATCCTCGTGTGAGATC 57.275 47.619 0.00 0.00 45.57 2.75
307 310 4.211125 ACTATGTGATCCTCGTGTGAGAT 58.789 43.478 0.00 0.00 45.57 2.75
308 311 3.621558 ACTATGTGATCCTCGTGTGAGA 58.378 45.455 0.00 0.00 45.57 3.27
309 312 4.377839 AACTATGTGATCCTCGTGTGAG 57.622 45.455 0.00 0.00 42.18 3.51
310 313 4.801330 AAACTATGTGATCCTCGTGTGA 57.199 40.909 0.00 0.00 0.00 3.58
311 314 5.516696 CACTAAACTATGTGATCCTCGTGTG 59.483 44.000 0.00 0.00 36.38 3.82
312 315 5.394224 CCACTAAACTATGTGATCCTCGTGT 60.394 44.000 0.00 0.00 36.38 4.49
313 316 5.043903 CCACTAAACTATGTGATCCTCGTG 58.956 45.833 0.00 0.00 36.38 4.35
314 317 4.441634 GCCACTAAACTATGTGATCCTCGT 60.442 45.833 0.00 0.00 36.38 4.18
315 318 4.051922 GCCACTAAACTATGTGATCCTCG 58.948 47.826 0.00 0.00 36.38 4.63
316 319 5.283457 AGCCACTAAACTATGTGATCCTC 57.717 43.478 0.00 0.00 36.38 3.71
317 320 5.700402 AAGCCACTAAACTATGTGATCCT 57.300 39.130 0.00 0.00 36.38 3.24
318 321 5.880332 TCAAAGCCACTAAACTATGTGATCC 59.120 40.000 0.00 0.00 36.38 3.36
319 322 6.985188 TCAAAGCCACTAAACTATGTGATC 57.015 37.500 0.00 0.00 36.38 2.92
320 323 7.067494 GGATTCAAAGCCACTAAACTATGTGAT 59.933 37.037 0.00 0.00 36.38 3.06
321 324 6.374333 GGATTCAAAGCCACTAAACTATGTGA 59.626 38.462 0.00 0.00 36.38 3.58
322 325 6.375455 AGGATTCAAAGCCACTAAACTATGTG 59.625 38.462 0.00 0.00 36.79 3.21
323 326 6.485171 AGGATTCAAAGCCACTAAACTATGT 58.515 36.000 0.00 0.00 36.79 2.29
324 327 7.396540 AAGGATTCAAAGCCACTAAACTATG 57.603 36.000 0.00 0.00 36.79 2.23
325 328 8.422577 AAAAGGATTCAAAGCCACTAAACTAT 57.577 30.769 0.00 0.00 36.79 2.12
326 329 7.039993 GGAAAAGGATTCAAAGCCACTAAACTA 60.040 37.037 0.00 0.00 36.79 2.24
327 330 6.239317 GGAAAAGGATTCAAAGCCACTAAACT 60.239 38.462 0.00 0.00 36.79 2.66
328 331 5.926542 GGAAAAGGATTCAAAGCCACTAAAC 59.073 40.000 0.00 0.00 36.79 2.01
329 332 5.278758 CGGAAAAGGATTCAAAGCCACTAAA 60.279 40.000 0.00 0.00 36.79 1.85
330 333 4.217550 CGGAAAAGGATTCAAAGCCACTAA 59.782 41.667 0.00 0.00 36.79 2.24
331 334 3.756434 CGGAAAAGGATTCAAAGCCACTA 59.244 43.478 0.00 0.00 36.79 2.74
332 335 2.558359 CGGAAAAGGATTCAAAGCCACT 59.442 45.455 0.00 0.00 36.79 4.00
333 336 2.926586 GCGGAAAAGGATTCAAAGCCAC 60.927 50.000 0.00 0.00 36.79 5.01
334 337 1.272212 GCGGAAAAGGATTCAAAGCCA 59.728 47.619 0.00 0.00 36.79 4.75
335 338 1.546029 AGCGGAAAAGGATTCAAAGCC 59.454 47.619 0.00 0.00 33.78 4.35
336 339 4.096382 TCATAGCGGAAAAGGATTCAAAGC 59.904 41.667 0.00 0.00 0.00 3.51
337 340 5.818136 TCATAGCGGAAAAGGATTCAAAG 57.182 39.130 0.00 0.00 0.00 2.77
341 344 5.529060 ACTGATTCATAGCGGAAAAGGATTC 59.471 40.000 0.00 0.00 0.00 2.52
360 363 3.243501 GGTGTGAACAATGCAACACTGAT 60.244 43.478 14.80 0.00 34.81 2.90
363 366 2.098614 TGGTGTGAACAATGCAACACT 58.901 42.857 14.80 0.00 34.81 3.55
369 372 4.391523 ACAAAACTTTGGTGTGAACAATGC 59.608 37.500 7.09 0.00 42.34 3.56
374 377 4.387559 GGAACACAAAACTTTGGTGTGAAC 59.612 41.667 14.31 9.49 44.35 3.18
378 381 2.094442 CGGGAACACAAAACTTTGGTGT 60.094 45.455 8.65 8.65 42.34 4.16
382 385 1.136110 AGGCGGGAACACAAAACTTTG 59.864 47.619 0.60 0.60 43.62 2.77
386 389 1.658114 GGAGGCGGGAACACAAAAC 59.342 57.895 0.00 0.00 0.00 2.43
387 390 1.894756 CGGAGGCGGGAACACAAAA 60.895 57.895 0.00 0.00 0.00 2.44
396 399 1.078001 AAAATGGTACGGAGGCGGG 60.078 57.895 0.00 0.00 0.00 6.13
397 400 0.391927 TGAAAATGGTACGGAGGCGG 60.392 55.000 0.00 0.00 0.00 6.13
401 404 5.277857 AGTAGGATGAAAATGGTACGGAG 57.722 43.478 0.00 0.00 0.00 4.63
404 407 6.594159 ACAAGAAGTAGGATGAAAATGGTACG 59.406 38.462 0.00 0.00 0.00 3.67
407 410 5.183904 GCACAAGAAGTAGGATGAAAATGGT 59.816 40.000 0.00 0.00 0.00 3.55
410 413 6.660521 TCATGCACAAGAAGTAGGATGAAAAT 59.339 34.615 0.00 0.00 35.19 1.82
411 414 6.003326 TCATGCACAAGAAGTAGGATGAAAA 58.997 36.000 0.00 0.00 35.19 2.29
413 416 5.164620 TCATGCACAAGAAGTAGGATGAA 57.835 39.130 0.00 0.00 35.19 2.57
414 417 4.223700 ACTCATGCACAAGAAGTAGGATGA 59.776 41.667 4.26 0.00 35.48 2.92
415 418 4.511527 ACTCATGCACAAGAAGTAGGATG 58.488 43.478 4.26 0.00 32.53 3.51
416 419 4.383552 GGACTCATGCACAAGAAGTAGGAT 60.384 45.833 4.26 0.00 0.00 3.24
417 420 3.055819 GGACTCATGCACAAGAAGTAGGA 60.056 47.826 4.26 0.00 0.00 2.94
418 421 3.265791 GGACTCATGCACAAGAAGTAGG 58.734 50.000 4.26 0.00 0.00 3.18
420 423 3.664107 GTGGACTCATGCACAAGAAGTA 58.336 45.455 4.26 0.00 45.96 2.24
421 424 2.498167 GTGGACTCATGCACAAGAAGT 58.502 47.619 4.26 0.00 45.96 3.01
430 433 4.158384 CGTAATTTTGTGTGGACTCATGC 58.842 43.478 0.00 0.00 0.00 4.06
431 434 5.356882 ACGTAATTTTGTGTGGACTCATG 57.643 39.130 0.00 0.00 0.00 3.07
433 436 4.636648 ACAACGTAATTTTGTGTGGACTCA 59.363 37.500 0.00 0.00 35.82 3.41
509 528 8.593492 TCTCTGTAATCATGATTTAATCACGG 57.407 34.615 25.26 20.01 43.01 4.94
510 529 8.706936 CCTCTCTGTAATCATGATTTAATCACG 58.293 37.037 25.26 12.85 43.01 4.35
513 532 9.784531 TTCCCTCTCTGTAATCATGATTTAATC 57.215 33.333 25.26 13.81 32.50 1.75
516 535 9.565090 CAATTCCCTCTCTGTAATCATGATTTA 57.435 33.333 25.26 14.08 32.50 1.40
517 536 7.504911 CCAATTCCCTCTCTGTAATCATGATTT 59.495 37.037 25.26 10.37 32.50 2.17
518 537 7.002879 CCAATTCCCTCTCTGTAATCATGATT 58.997 38.462 23.75 23.75 34.93 2.57
519 538 6.466904 CCCAATTCCCTCTCTGTAATCATGAT 60.467 42.308 1.18 1.18 0.00 2.45
521 540 5.068636 CCCAATTCCCTCTCTGTAATCATG 58.931 45.833 0.00 0.00 0.00 3.07
529 549 0.182299 GGAGCCCAATTCCCTCTCTG 59.818 60.000 0.00 0.00 0.00 3.35
685 707 9.350951 CATATCCATGCATTTCTCCATACATAT 57.649 33.333 0.00 0.00 0.00 1.78
686 708 8.330993 ACATATCCATGCATTTCTCCATACATA 58.669 33.333 0.00 0.00 35.39 2.29
687 709 7.179966 ACATATCCATGCATTTCTCCATACAT 58.820 34.615 0.00 0.00 35.39 2.29
688 710 6.545567 ACATATCCATGCATTTCTCCATACA 58.454 36.000 0.00 0.00 35.39 2.29
689 711 8.618677 CATACATATCCATGCATTTCTCCATAC 58.381 37.037 0.00 0.00 35.39 2.39
690 712 7.776500 CCATACATATCCATGCATTTCTCCATA 59.224 37.037 0.00 0.00 35.39 2.74
691 713 6.605995 CCATACATATCCATGCATTTCTCCAT 59.394 38.462 0.00 0.00 35.39 3.41
692 714 5.947566 CCATACATATCCATGCATTTCTCCA 59.052 40.000 0.00 0.00 35.39 3.86
693 715 6.094603 GTCCATACATATCCATGCATTTCTCC 59.905 42.308 0.00 0.00 35.39 3.71
694 716 6.656270 TGTCCATACATATCCATGCATTTCTC 59.344 38.462 0.00 0.00 35.39 2.87
695 717 6.545567 TGTCCATACATATCCATGCATTTCT 58.454 36.000 0.00 0.00 35.39 2.52
696 718 6.822667 TGTCCATACATATCCATGCATTTC 57.177 37.500 0.00 0.00 35.39 2.17
697 719 7.310175 CCATTGTCCATACATATCCATGCATTT 60.310 37.037 0.00 0.00 34.97 2.32
698 720 6.153851 CCATTGTCCATACATATCCATGCATT 59.846 38.462 0.00 0.00 34.97 3.56
699 721 5.655090 CCATTGTCCATACATATCCATGCAT 59.345 40.000 0.00 0.00 34.97 3.96
700 722 5.011586 CCATTGTCCATACATATCCATGCA 58.988 41.667 0.00 0.00 34.97 3.96
701 723 5.255687 TCCATTGTCCATACATATCCATGC 58.744 41.667 0.00 0.00 34.97 4.06
702 724 6.479006 ACTCCATTGTCCATACATATCCATG 58.521 40.000 0.00 0.00 34.97 3.66
703 725 6.708885 ACTCCATTGTCCATACATATCCAT 57.291 37.500 0.00 0.00 34.97 3.41
704 726 7.450074 GTTACTCCATTGTCCATACATATCCA 58.550 38.462 0.00 0.00 34.97 3.41
705 727 6.590292 CGTTACTCCATTGTCCATACATATCC 59.410 42.308 0.00 0.00 34.97 2.59
719 741 7.713507 TGCTTTATACTATTGCGTTACTCCATT 59.286 33.333 0.00 0.00 0.00 3.16
724 746 6.018994 GCACTGCTTTATACTATTGCGTTACT 60.019 38.462 0.00 0.00 0.00 2.24
725 747 6.127403 GCACTGCTTTATACTATTGCGTTAC 58.873 40.000 0.00 0.00 0.00 2.50
726 748 5.235616 GGCACTGCTTTATACTATTGCGTTA 59.764 40.000 0.00 0.00 0.00 3.18
727 749 4.035208 GGCACTGCTTTATACTATTGCGTT 59.965 41.667 0.00 0.00 0.00 4.84
728 750 3.560068 GGCACTGCTTTATACTATTGCGT 59.440 43.478 0.00 0.00 0.00 5.24
729 751 3.559655 TGGCACTGCTTTATACTATTGCG 59.440 43.478 0.00 0.00 0.00 4.85
730 752 4.552767 CGTGGCACTGCTTTATACTATTGC 60.553 45.833 16.72 0.00 0.00 3.56
731 753 4.024893 CCGTGGCACTGCTTTATACTATTG 60.025 45.833 16.72 0.00 0.00 1.90
732 754 4.127171 CCGTGGCACTGCTTTATACTATT 58.873 43.478 16.72 0.00 0.00 1.73
733 755 3.494398 CCCGTGGCACTGCTTTATACTAT 60.494 47.826 16.72 0.00 0.00 2.12
734 756 2.159014 CCCGTGGCACTGCTTTATACTA 60.159 50.000 16.72 0.00 0.00 1.82
848 875 3.643792 TGGAATTAGTTTTGTTGGGTGGG 59.356 43.478 0.00 0.00 0.00 4.61
854 881 5.068460 TGGTGGAGTGGAATTAGTTTTGTTG 59.932 40.000 0.00 0.00 0.00 3.33
876 903 0.252193 TTGGCTGGGGATTTTCCTGG 60.252 55.000 0.00 0.00 36.57 4.45
877 904 1.276138 GTTTGGCTGGGGATTTTCCTG 59.724 52.381 0.00 0.00 36.57 3.86
878 905 1.644509 GTTTGGCTGGGGATTTTCCT 58.355 50.000 0.00 0.00 36.57 3.36
879 906 0.613260 GGTTTGGCTGGGGATTTTCC 59.387 55.000 0.00 0.00 35.23 3.13
880 907 1.347062 TGGTTTGGCTGGGGATTTTC 58.653 50.000 0.00 0.00 0.00 2.29
1025 1073 2.035312 ACCCCGACGAGTAGCAGT 59.965 61.111 0.00 0.00 0.00 4.40
1053 1101 1.525077 CTCCTCGTCCTCCTCCTCG 60.525 68.421 0.00 0.00 0.00 4.63
1226 1274 2.122189 GATGAGGGGAGGGGAGGG 60.122 72.222 0.00 0.00 0.00 4.30
1229 1277 1.004758 CCAAGATGAGGGGAGGGGA 59.995 63.158 0.00 0.00 0.00 4.81
1254 1302 5.041191 AGAAAACAGAGCAGGAAGAAGAA 57.959 39.130 0.00 0.00 0.00 2.52
1256 1304 4.084118 CGAAGAAAACAGAGCAGGAAGAAG 60.084 45.833 0.00 0.00 0.00 2.85
1330 1379 0.606401 CAATAGCGGCCGATGGGAAT 60.606 55.000 33.48 10.61 34.06 3.01
1417 1467 2.232941 CAGAGCCAAAGCAATGGAACAT 59.767 45.455 11.63 0.00 43.50 2.71
1434 1484 0.447801 CGGCCCGAATTTGAACAGAG 59.552 55.000 0.00 0.00 0.00 3.35
1488 1538 3.820467 ACAGAGATCACGAATTTGGCAAA 59.180 39.130 16.01 16.01 0.00 3.68
1491 1541 3.751621 CAACAGAGATCACGAATTTGGC 58.248 45.455 0.00 0.00 0.00 4.52
1521 1571 6.653020 TGCACATATCAGAGAATAAACCTGT 58.347 36.000 0.00 0.00 0.00 4.00
1529 1579 4.885907 CCCAGTTTGCACATATCAGAGAAT 59.114 41.667 0.00 0.00 0.00 2.40
1531 1581 3.519107 TCCCAGTTTGCACATATCAGAGA 59.481 43.478 0.00 0.00 0.00 3.10
1533 1583 3.609853 GTCCCAGTTTGCACATATCAGA 58.390 45.455 0.00 0.00 0.00 3.27
1534 1584 2.684881 GGTCCCAGTTTGCACATATCAG 59.315 50.000 0.00 0.00 0.00 2.90
1563 1619 3.955650 CCGATGGAGGACGGTAAATAT 57.044 47.619 0.00 0.00 43.53 1.28
1579 1635 7.437267 CGTAAAATACAGAGTTCCATTACCGAT 59.563 37.037 0.00 0.00 0.00 4.18
1584 1640 8.723311 CAAACCGTAAAATACAGAGTTCCATTA 58.277 33.333 0.00 0.00 0.00 1.90
1592 1648 5.351233 TGCACAAACCGTAAAATACAGAG 57.649 39.130 0.00 0.00 0.00 3.35
1593 1649 5.527951 TCTTGCACAAACCGTAAAATACAGA 59.472 36.000 0.00 0.00 0.00 3.41
1601 1658 2.946329 ACATGTCTTGCACAAACCGTAA 59.054 40.909 0.00 0.00 38.97 3.18
1603 1660 1.388547 ACATGTCTTGCACAAACCGT 58.611 45.000 0.00 0.00 38.97 4.83
1606 1663 7.114811 CCAGTTAATAACATGTCTTGCACAAAC 59.885 37.037 0.00 0.00 38.97 2.93
1608 1665 6.488344 TCCAGTTAATAACATGTCTTGCACAA 59.512 34.615 0.00 0.00 38.97 3.33
1617 1674 5.061179 GGCCGTATCCAGTTAATAACATGT 58.939 41.667 5.89 0.00 0.00 3.21
1624 1683 2.884639 GCAATGGCCGTATCCAGTTAAT 59.115 45.455 0.00 0.00 39.89 1.40
1625 1684 2.294074 GCAATGGCCGTATCCAGTTAA 58.706 47.619 0.00 0.00 39.89 2.01
1884 1943 3.106986 GCTCAGCCCGATGCCCTTA 62.107 63.158 0.00 0.00 42.71 2.69
1909 1968 2.584608 CGACCGGCAAATCTCCCT 59.415 61.111 0.00 0.00 0.00 4.20
1964 2023 4.498009 GCTTCAAATCGGTGTGGATAATGG 60.498 45.833 0.00 0.00 0.00 3.16
2079 2138 4.367023 GGTGGCGTGCGGTACTGA 62.367 66.667 5.68 0.00 0.00 3.41
2094 2153 0.976641 TCTCGCTGAAACTGATGGGT 59.023 50.000 0.00 0.00 0.00 4.51
2095 2154 2.005451 CTTCTCGCTGAAACTGATGGG 58.995 52.381 0.00 0.00 33.79 4.00
2097 2156 3.242349 GCATCTTCTCGCTGAAACTGATG 60.242 47.826 0.00 0.00 37.65 3.07
2352 2411 2.267426 CAAGCGAACGACCACATATCA 58.733 47.619 0.00 0.00 0.00 2.15
2500 2563 5.520376 AAACCATCATTGCTAATGCTACC 57.480 39.130 4.56 0.00 38.77 3.18
2573 2651 6.635030 AGGAAAATGGACTAGTTTTGACAC 57.365 37.500 0.00 0.00 0.00 3.67
2575 2653 7.755373 GCATAAGGAAAATGGACTAGTTTTGAC 59.245 37.037 0.00 0.00 0.00 3.18
2576 2654 7.093945 GGCATAAGGAAAATGGACTAGTTTTGA 60.094 37.037 0.00 0.00 0.00 2.69
2577 2655 7.035612 GGCATAAGGAAAATGGACTAGTTTTG 58.964 38.462 0.00 0.00 0.00 2.44
2578 2656 6.127730 CGGCATAAGGAAAATGGACTAGTTTT 60.128 38.462 0.00 0.00 0.00 2.43
2585 2663 2.618709 CCTCGGCATAAGGAAAATGGAC 59.381 50.000 0.00 0.00 35.83 4.02
2607 2685 2.332063 AAATAGGGTGATGTCCGCAG 57.668 50.000 0.00 0.00 0.00 5.18
2611 2689 7.404671 AATACACAAAAATAGGGTGATGTCC 57.595 36.000 0.00 0.00 36.42 4.02
2681 2759 8.592998 CCAAAGCGTCTACTTTTTATAGTGTAG 58.407 37.037 0.00 0.00 37.78 2.74
3085 3165 2.421073 CTGTCATTGTCGGTACTCGGTA 59.579 50.000 0.00 0.00 39.77 4.02
3089 3169 4.495422 ACAATCTGTCATTGTCGGTACTC 58.505 43.478 0.00 0.00 37.69 2.59
3104 3184 2.002586 CACTGGCTACGGAACAATCTG 58.997 52.381 0.00 0.00 37.98 2.90
3165 3256 2.166459 TGTGATCCGCTTTAGAGGACAG 59.834 50.000 4.27 0.00 46.55 3.51
3178 3269 3.132289 ACATAGGTAAGGTGTGTGATCCG 59.868 47.826 0.00 0.00 0.00 4.18
3179 3270 4.755266 ACATAGGTAAGGTGTGTGATCC 57.245 45.455 0.00 0.00 0.00 3.36
3320 3443 5.106555 GGTGAGATAACAACACTTGGATGTG 60.107 44.000 0.00 0.00 43.07 3.21
3321 3444 5.003804 GGTGAGATAACAACACTTGGATGT 58.996 41.667 0.00 0.00 35.28 3.06
3322 3445 5.003160 TGGTGAGATAACAACACTTGGATG 58.997 41.667 0.00 0.00 32.24 3.51
3323 3446 5.241403 TGGTGAGATAACAACACTTGGAT 57.759 39.130 0.00 0.00 32.24 3.41
3324 3447 4.698201 TGGTGAGATAACAACACTTGGA 57.302 40.909 0.00 0.00 32.24 3.53
3325 3448 4.023193 GGTTGGTGAGATAACAACACTTGG 60.023 45.833 9.69 0.00 44.61 3.61
3388 3519 3.118334 CCAGAGTTTCCATCATCAGAGCT 60.118 47.826 0.00 0.00 0.00 4.09
3406 3537 3.200825 CCTTCTTAGGCATCTTTCCCAGA 59.799 47.826 0.00 0.00 33.99 3.86
3409 3540 3.546724 GACCTTCTTAGGCATCTTTCCC 58.453 50.000 0.00 0.00 46.22 3.97
3430 3561 6.749036 AGGGAGTTACAAGATATTGTAGGG 57.251 41.667 12.36 0.00 38.49 3.53
3432 3563 9.099454 GACAAAGGGAGTTACAAGATATTGTAG 57.901 37.037 12.36 1.82 38.49 2.74
3433 3564 8.598916 TGACAAAGGGAGTTACAAGATATTGTA 58.401 33.333 8.83 8.83 36.44 2.41
3439 3570 5.880901 ACATGACAAAGGGAGTTACAAGAT 58.119 37.500 0.00 0.00 0.00 2.40
3443 3574 4.787551 ACAACATGACAAAGGGAGTTACA 58.212 39.130 0.00 0.00 0.00 2.41
3444 3575 5.063880 AGACAACATGACAAAGGGAGTTAC 58.936 41.667 0.00 0.00 0.00 2.50
3447 3578 3.864789 AGACAACATGACAAAGGGAGT 57.135 42.857 0.00 0.00 0.00 3.85
3448 3579 5.355350 GGATTAGACAACATGACAAAGGGAG 59.645 44.000 0.00 0.00 0.00 4.30
3449 3580 5.253330 GGATTAGACAACATGACAAAGGGA 58.747 41.667 0.00 0.00 0.00 4.20
3450 3581 4.399303 GGGATTAGACAACATGACAAAGGG 59.601 45.833 0.00 0.00 0.00 3.95
3452 3583 6.573664 TTGGGATTAGACAACATGACAAAG 57.426 37.500 0.00 0.00 0.00 2.77
3453 3584 6.968263 TTTGGGATTAGACAACATGACAAA 57.032 33.333 0.00 0.00 0.00 2.83
3463 3594 2.799126 ACGGCATTTGGGATTAGACA 57.201 45.000 0.00 0.00 0.00 3.41
3465 3596 4.974645 AGATACGGCATTTGGGATTAGA 57.025 40.909 0.00 0.00 0.00 2.10
3467 3598 6.012858 AGGATTAGATACGGCATTTGGGATTA 60.013 38.462 0.00 0.00 0.00 1.75
3468 3599 5.010282 GGATTAGATACGGCATTTGGGATT 58.990 41.667 0.00 0.00 0.00 3.01
3469 3600 4.289672 AGGATTAGATACGGCATTTGGGAT 59.710 41.667 0.00 0.00 0.00 3.85
3471 3602 3.753272 CAGGATTAGATACGGCATTTGGG 59.247 47.826 0.00 0.00 0.00 4.12
3472 3603 3.189287 GCAGGATTAGATACGGCATTTGG 59.811 47.826 0.00 0.00 34.20 3.28
3473 3604 3.189287 GGCAGGATTAGATACGGCATTTG 59.811 47.826 0.00 0.00 35.88 2.32
3474 3605 3.412386 GGCAGGATTAGATACGGCATTT 58.588 45.455 0.00 0.00 35.88 2.32
3475 3606 2.612972 CGGCAGGATTAGATACGGCATT 60.613 50.000 0.00 0.00 35.88 3.56
3476 3607 1.066858 CGGCAGGATTAGATACGGCAT 60.067 52.381 0.00 0.00 35.88 4.40
3478 3609 0.317479 ACGGCAGGATTAGATACGGC 59.683 55.000 0.00 0.00 33.18 5.68
3479 3610 2.223971 ACAACGGCAGGATTAGATACGG 60.224 50.000 0.00 0.00 0.00 4.02
3480 3611 3.050619 GACAACGGCAGGATTAGATACG 58.949 50.000 0.00 0.00 0.00 3.06
3489 3622 0.756294 TCTGAAAGACAACGGCAGGA 59.244 50.000 0.00 0.00 38.67 3.86
3684 3817 4.070552 GCGGTCGGCCTGTTCTCT 62.071 66.667 3.66 0.00 34.80 3.10
3764 3903 2.568956 TGTCTGTTAGGCTGCTTCTCAT 59.431 45.455 0.00 0.00 0.00 2.90
3766 3905 2.751166 TGTCTGTTAGGCTGCTTCTC 57.249 50.000 0.00 0.00 0.00 2.87
3781 3920 4.141824 GCCTCCTCTGTAAAGCTATTGTCT 60.142 45.833 0.00 0.00 0.00 3.41
3797 3940 0.456628 GTCTAACACTCGGCCTCCTC 59.543 60.000 0.00 0.00 0.00 3.71
3829 3972 1.063174 GCCATGTCGAAATCAGTGCTC 59.937 52.381 0.00 0.00 0.00 4.26
3905 4048 0.578683 CATGACGACGATGATGCCAC 59.421 55.000 0.00 0.00 0.00 5.01
3907 4050 1.723542 GATCATGACGACGATGATGCC 59.276 52.381 14.66 1.14 40.03 4.40
3917 4060 3.059257 CCAAAAACACACGATCATGACGA 60.059 43.478 19.74 0.00 34.70 4.20
3945 4090 2.519302 ACAAGGCCACAGCACACC 60.519 61.111 5.01 0.00 42.56 4.16
3947 4092 2.519063 CCACAAGGCCACAGCACA 60.519 61.111 5.01 0.00 42.56 4.57
3951 4096 3.297620 GCACCCACAAGGCCACAG 61.298 66.667 5.01 0.00 40.58 3.66
3952 4097 4.134785 TGCACCCACAAGGCCACA 62.135 61.111 5.01 0.00 40.58 4.17
3953 4098 3.297620 CTGCACCCACAAGGCCAC 61.298 66.667 5.01 0.00 40.58 5.01
3955 4100 2.203480 TTCTGCACCCACAAGGCC 60.203 61.111 0.00 0.00 40.58 5.19
3957 4102 1.228367 AGCTTCTGCACCCACAAGG 60.228 57.895 0.00 0.00 42.74 3.61
3958 4103 0.535780 TCAGCTTCTGCACCCACAAG 60.536 55.000 0.00 0.00 42.74 3.16
3959 4104 0.111061 ATCAGCTTCTGCACCCACAA 59.889 50.000 0.00 0.00 42.74 3.33
3960 4105 0.607217 CATCAGCTTCTGCACCCACA 60.607 55.000 0.00 0.00 42.74 4.17
4068 4228 0.385390 CAACCAGCAAACGGAAAGCT 59.615 50.000 0.00 0.00 39.63 3.74
4122 4285 2.899838 GAACCACACTGCACCGCA 60.900 61.111 0.00 0.00 36.92 5.69
4281 4448 5.981174 TGTACTTATGTAAACAGTAGGGGC 58.019 41.667 0.00 0.00 0.00 5.80
4303 4470 4.082190 TCGTTGGAGATTCTCTAACCACTG 60.082 45.833 27.32 17.76 45.09 3.66
4304 4471 4.087182 TCGTTGGAGATTCTCTAACCACT 58.913 43.478 27.32 0.00 45.09 4.00
4305 4472 4.082136 ACTCGTTGGAGATTCTCTAACCAC 60.082 45.833 27.32 11.97 45.09 4.16
4306 4473 4.087182 ACTCGTTGGAGATTCTCTAACCA 58.913 43.478 27.32 18.89 45.09 3.67
4307 4474 4.440387 GGACTCGTTGGAGATTCTCTAACC 60.440 50.000 27.32 17.47 45.09 2.85
4337 4504 7.556996 TGCTAAAACCACTTTTAGGTGAACTTA 59.443 33.333 12.60 0.00 44.95 2.24
4401 4571 6.839124 ACCATGCTTAAAAATCTGATGTCA 57.161 33.333 0.00 0.00 0.00 3.58
4410 4580 6.750039 CCGTTCGATTTACCATGCTTAAAAAT 59.250 34.615 0.00 0.00 0.00 1.82
4430 4600 2.661195 CGATTTGCCATGAAAACCGTTC 59.339 45.455 0.00 0.00 0.00 3.95
4435 4605 1.696988 ACGCGATTTGCCATGAAAAC 58.303 45.000 15.93 0.00 42.08 2.43
4450 4620 2.196749 AGAGATTTGTCATGCTACGCG 58.803 47.619 3.53 3.53 0.00 6.01
4474 4644 2.025863 GCTAGGATTTGCCATGCCTGT 61.026 52.381 0.00 0.00 40.02 4.00
4477 4647 1.113788 TTGCTAGGATTTGCCATGCC 58.886 50.000 0.00 0.00 40.02 4.40
4544 4720 4.336280 GAACTTTTTCAGGACCCTGCTAT 58.664 43.478 11.11 0.00 43.31 2.97
4549 4725 3.056832 AGAGGAACTTTTTCAGGACCCT 58.943 45.455 0.00 0.00 41.55 4.34
4557 4733 5.836821 ACCACTTTCAGAGGAACTTTTTC 57.163 39.130 0.00 0.00 41.55 2.29
4600 5138 1.995376 ACAAGCAAACCACCCCTAAG 58.005 50.000 0.00 0.00 0.00 2.18
4628 5166 5.057149 ACCTTGACAGCTAAACTACACAAG 58.943 41.667 0.00 0.00 34.57 3.16
4639 5177 5.300539 TGTGCAATTTTAACCTTGACAGCTA 59.699 36.000 0.00 0.00 0.00 3.32
4673 5211 3.926527 TGTGCAATTTACACACGCAAAAA 59.073 34.783 6.91 0.00 42.88 1.94
4674 5212 3.511699 TGTGCAATTTACACACGCAAAA 58.488 36.364 6.91 0.00 42.88 2.44
4675 5213 3.150848 TGTGCAATTTACACACGCAAA 57.849 38.095 6.91 0.00 42.88 3.68
4676 5214 2.851805 TGTGCAATTTACACACGCAA 57.148 40.000 6.91 0.00 42.88 4.85
4682 5220 7.172361 ACCCAATTTGTAATGTGCAATTTACAC 59.828 33.333 17.71 2.06 37.87 2.90
4683 5221 7.220030 ACCCAATTTGTAATGTGCAATTTACA 58.780 30.769 15.25 15.25 36.73 2.41
4684 5222 7.665561 ACCCAATTTGTAATGTGCAATTTAC 57.334 32.000 11.34 11.34 0.00 2.01
4685 5223 9.950496 ATTACCCAATTTGTAATGTGCAATTTA 57.050 25.926 8.60 0.00 37.48 1.40
4718 5256 2.350895 CCCAGCGAATGTCCACCA 59.649 61.111 0.00 0.00 0.00 4.17
4719 5257 2.438434 CCCCAGCGAATGTCCACC 60.438 66.667 0.00 0.00 0.00 4.61
4720 5258 2.040544 CACCCCAGCGAATGTCCAC 61.041 63.158 0.00 0.00 0.00 4.02
4721 5259 2.350895 CACCCCAGCGAATGTCCA 59.649 61.111 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.