Multiple sequence alignment - TraesCS5A01G352300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G352300 chr5A 100.000 3743 0 0 1 3743 554341912 554345654 0.000000e+00 6913.0
1 TraesCS5A01G352300 chr5A 88.510 1027 98 17 1813 2830 509219676 509220691 0.000000e+00 1225.0
2 TraesCS5A01G352300 chr5A 96.324 272 8 2 2866 3137 509220695 509220964 2.650000e-121 446.0
3 TraesCS5A01G352300 chr5A 88.288 222 25 1 529 750 492991449 492991229 7.970000e-67 265.0
4 TraesCS5A01G352300 chr5A 85.981 214 27 2 260 472 492991448 492991237 3.760000e-55 226.0
5 TraesCS5A01G352300 chr2A 99.080 1740 16 0 1716 3455 572450706 572452445 0.000000e+00 3125.0
6 TraesCS5A01G352300 chr2A 99.129 1723 9 2 1 1723 572448256 572449972 0.000000e+00 3094.0
7 TraesCS5A01G352300 chr2A 94.505 91 4 1 3654 3743 735570960 735570870 5.040000e-29 139.0
8 TraesCS5A01G352300 chr5D 92.489 1318 84 7 1813 3118 404873347 404872033 0.000000e+00 1871.0
9 TraesCS5A01G352300 chr5D 78.626 262 47 8 2709 2967 540083528 540083783 8.320000e-37 165.0
10 TraesCS5A01G352300 chr5B 89.730 1334 113 18 1815 3138 486039985 486038666 0.000000e+00 1683.0
11 TraesCS5A01G352300 chr5B 81.197 234 37 6 2731 2961 682371521 682371750 8.260000e-42 182.0
12 TraesCS5A01G352300 chr5B 92.308 91 4 2 3654 3743 617661131 617661219 3.920000e-25 126.0
13 TraesCS5A01G352300 chr7D 87.048 664 84 2 1020 1681 219888776 219889439 0.000000e+00 749.0
14 TraesCS5A01G352300 chr7A 86.181 673 90 3 1020 1689 232459509 232458837 0.000000e+00 725.0
15 TraesCS5A01G352300 chr7A 88.739 222 24 1 529 750 561608174 561608394 1.710000e-68 270.0
16 TraesCS5A01G352300 chr7A 87.383 214 24 2 260 472 561608175 561608386 3.740000e-60 243.0
17 TraesCS5A01G352300 chr7B 86.058 624 83 4 1020 1640 179778865 179778243 0.000000e+00 667.0
18 TraesCS5A01G352300 chr7B 85.192 520 49 12 472 966 319047526 319047010 3.340000e-140 508.0
19 TraesCS5A01G352300 chr7B 88.732 284 30 2 472 755 408372556 408372837 2.770000e-91 346.0
20 TraesCS5A01G352300 chr7B 92.019 213 14 3 260 471 408372613 408372823 2.830000e-76 296.0
21 TraesCS5A01G352300 chr7B 90.654 214 16 3 260 472 319047469 319047259 7.920000e-72 281.0
22 TraesCS5A01G352300 chr7B 93.820 178 10 1 39 216 319047914 319047738 2.220000e-67 267.0
23 TraesCS5A01G352300 chr7B 90.909 187 16 1 30 216 408372159 408372344 2.230000e-62 250.0
24 TraesCS5A01G352300 chr1D 85.524 525 52 12 3134 3644 201924892 201924378 9.210000e-146 527.0
25 TraesCS5A01G352300 chr4B 84.794 388 33 11 604 966 496440798 496441184 2.120000e-97 366.0
26 TraesCS5A01G352300 chr4B 91.444 187 15 1 30 216 496429860 496430045 4.800000e-64 255.0
27 TraesCS5A01G352300 chr4B 90.647 139 12 1 334 472 496440798 496440935 2.300000e-42 183.0
28 TraesCS5A01G352300 chr6B 88.739 222 24 1 529 750 142692673 142692893 1.710000e-68 270.0
29 TraesCS5A01G352300 chr6B 87.383 214 24 2 260 472 142692674 142692885 3.740000e-60 243.0
30 TraesCS5A01G352300 chr6B 90.196 102 9 1 866 966 560981690 560981791 8.440000e-27 132.0
31 TraesCS5A01G352300 chr6B 79.439 107 16 3 866 966 560978452 560978346 1.870000e-08 71.3
32 TraesCS5A01G352300 chr3A 88.739 222 24 1 529 750 661661044 661660824 1.710000e-68 270.0
33 TraesCS5A01G352300 chr3A 87.383 214 24 2 260 472 661661043 661660832 3.740000e-60 243.0
34 TraesCS5A01G352300 chr6A 88.288 222 26 0 529 750 495440732 495440511 2.220000e-67 267.0
35 TraesCS5A01G352300 chr6A 87.383 214 25 2 260 472 495440731 495440519 1.040000e-60 244.0
36 TraesCS5A01G352300 chr2B 91.444 187 15 1 30 216 639452786 639452971 4.800000e-64 255.0
37 TraesCS5A01G352300 chr2B 91.525 177 14 1 40 216 639438237 639438412 3.740000e-60 243.0
38 TraesCS5A01G352300 chr2B 91.525 177 14 1 40 216 639439018 639439193 3.740000e-60 243.0
39 TraesCS5A01G352300 chr2B 94.805 154 6 2 63 216 639432071 639432222 4.830000e-59 239.0
40 TraesCS5A01G352300 chr2B 89.305 187 17 3 30 216 639425724 639425907 8.080000e-57 231.0
41 TraesCS5A01G352300 chr1A 95.495 111 5 0 1697 1807 352130600 352130490 1.070000e-40 178.0
42 TraesCS5A01G352300 chr1A 95.495 111 4 1 1697 1807 7306424 7306533 3.840000e-40 176.0
43 TraesCS5A01G352300 chr3D 89.412 85 7 2 883 966 584117615 584117698 5.110000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G352300 chr5A 554341912 554345654 3742 False 6913.000000 6913 100.000000 1 3743 1 chr5A.!!$F1 3742
1 TraesCS5A01G352300 chr5A 509219676 509220964 1288 False 835.500000 1225 92.417000 1813 3137 2 chr5A.!!$F2 1324
2 TraesCS5A01G352300 chr2A 572448256 572452445 4189 False 3109.500000 3125 99.104500 1 3455 2 chr2A.!!$F1 3454
3 TraesCS5A01G352300 chr5D 404872033 404873347 1314 True 1871.000000 1871 92.489000 1813 3118 1 chr5D.!!$R1 1305
4 TraesCS5A01G352300 chr5B 486038666 486039985 1319 True 1683.000000 1683 89.730000 1815 3138 1 chr5B.!!$R1 1323
5 TraesCS5A01G352300 chr7D 219888776 219889439 663 False 749.000000 749 87.048000 1020 1681 1 chr7D.!!$F1 661
6 TraesCS5A01G352300 chr7A 232458837 232459509 672 True 725.000000 725 86.181000 1020 1689 1 chr7A.!!$R1 669
7 TraesCS5A01G352300 chr7B 179778243 179778865 622 True 667.000000 667 86.058000 1020 1640 1 chr7B.!!$R1 620
8 TraesCS5A01G352300 chr7B 319047010 319047914 904 True 352.000000 508 89.888667 39 966 3 chr7B.!!$R2 927
9 TraesCS5A01G352300 chr7B 408372159 408372837 678 False 297.333333 346 90.553333 30 755 3 chr7B.!!$F1 725
10 TraesCS5A01G352300 chr1D 201924378 201924892 514 True 527.000000 527 85.524000 3134 3644 1 chr1D.!!$R1 510
11 TraesCS5A01G352300 chr2B 639438237 639439193 956 False 243.000000 243 91.525000 40 216 2 chr2B.!!$F4 176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 3.982052 TGGAAGGAACCCAAACTAACCTA 59.018 43.478 0.0 0.0 0.00 3.08 F
479 558 6.609616 TCCACATCATCTGTATTGGTAGTGTA 59.390 38.462 0.0 0.0 35.91 2.90 F
1869 2720 4.521146 ACAAGACAAGAAGCTGGGATATG 58.479 43.478 0.0 0.0 0.00 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 2720 3.129988 AGAATGTGCTCCTAATTTGCTGC 59.870 43.478 0.00 0.00 0.0 5.25 R
2159 3013 5.064325 ACGAAAAGTTTGTAACCTGACTGAC 59.936 40.000 0.00 0.00 0.0 3.51 R
3622 4510 0.598065 ACCTTGAATTGCCGCACTTC 59.402 50.000 14.78 14.78 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 225 3.982052 TGGAAGGAACCCAAACTAACCTA 59.018 43.478 0.00 0.00 0.00 3.08
249 250 7.447374 TTCAACGGTGATTTCATATTTGTCT 57.553 32.000 2.76 0.00 32.48 3.41
479 558 6.609616 TCCACATCATCTGTATTGGTAGTGTA 59.390 38.462 0.00 0.00 35.91 2.90
1869 2720 4.521146 ACAAGACAAGAAGCTGGGATATG 58.479 43.478 0.00 0.00 0.00 1.78
2159 3013 8.407832 TCATAAGCATCCATGTGTCTTATTTTG 58.592 33.333 0.00 0.00 31.87 2.44
2358 3213 7.701078 TCAGCAGATCGTTACTATAGTTTGTTC 59.299 37.037 11.40 6.25 0.00 3.18
2464 3319 3.136626 AGAAGCCAGTACTGAACCACTTT 59.863 43.478 24.68 6.18 0.00 2.66
2630 3488 4.261363 GCTGCTTTACTCACTTTCTTTGCT 60.261 41.667 0.00 0.00 0.00 3.91
2666 3524 0.318699 GTGTGTCGCTGCTGTCAGTA 60.319 55.000 0.93 0.00 42.29 2.74
2878 3736 1.330234 TGCTGCCATCTTGCTTTTCA 58.670 45.000 0.00 0.00 0.00 2.69
3329 4206 1.599606 CGACAGGTGGTAGAGCAGCT 61.600 60.000 7.58 7.58 0.00 4.24
3463 4342 9.317936 TCTTATGTATGTCTCTTGTAATTGCTG 57.682 33.333 0.00 0.00 0.00 4.41
3513 4392 9.057089 CCCCTTCAGTTCAGATTTACAATATAC 57.943 37.037 0.00 0.00 0.00 1.47
3514 4393 9.838339 CCCTTCAGTTCAGATTTACAATATACT 57.162 33.333 0.00 0.00 0.00 2.12
3541 4420 8.299570 AGCAAATAACTTTCCTATCTGTTGTTG 58.700 33.333 0.00 0.00 0.00 3.33
3545 4424 3.655777 ACTTTCCTATCTGTTGTTGGGGA 59.344 43.478 0.00 0.00 0.00 4.81
3562 4441 6.039270 TGTTGGGGATATCGCTTTAGAAATTG 59.961 38.462 18.21 0.00 0.00 2.32
3572 4452 5.097529 CGCTTTAGAAATTGTGCATGATGT 58.902 37.500 0.00 0.00 0.00 3.06
3590 4478 8.405531 GCATGATGTCCTTTGTTATAGCTTTTA 58.594 33.333 0.00 0.00 0.00 1.52
3593 4481 9.515226 TGATGTCCTTTGTTATAGCTTTTAACT 57.485 29.630 15.96 0.00 32.09 2.24
3596 4484 9.781633 TGTCCTTTGTTATAGCTTTTAACTACA 57.218 29.630 15.96 11.05 32.09 2.74
3598 4486 8.943002 TCCTTTGTTATAGCTTTTAACTACAGC 58.057 33.333 15.96 0.00 32.09 4.40
3599 4487 8.726988 CCTTTGTTATAGCTTTTAACTACAGCA 58.273 33.333 15.96 0.00 35.88 4.41
3622 4510 9.499479 AGCAATCATATATTACTTCTGGTTCTG 57.501 33.333 0.00 0.00 0.00 3.02
3633 4521 1.153066 TGGTTCTGAAGTGCGGCAA 60.153 52.632 3.23 0.00 0.00 4.52
3644 4532 0.313672 GTGCGGCAATTCAAGGTTCA 59.686 50.000 3.23 0.00 0.00 3.18
3645 4533 0.597568 TGCGGCAATTCAAGGTTCAG 59.402 50.000 0.00 0.00 0.00 3.02
3646 4534 0.881118 GCGGCAATTCAAGGTTCAGA 59.119 50.000 0.00 0.00 0.00 3.27
3647 4535 1.474077 GCGGCAATTCAAGGTTCAGAT 59.526 47.619 0.00 0.00 0.00 2.90
3648 4536 2.094545 GCGGCAATTCAAGGTTCAGATT 60.095 45.455 0.00 0.00 0.00 2.40
3649 4537 3.614870 GCGGCAATTCAAGGTTCAGATTT 60.615 43.478 0.00 0.00 0.00 2.17
3650 4538 4.380444 GCGGCAATTCAAGGTTCAGATTTA 60.380 41.667 0.00 0.00 0.00 1.40
3651 4539 5.095490 CGGCAATTCAAGGTTCAGATTTAC 58.905 41.667 0.00 0.00 0.00 2.01
3652 4540 5.335583 CGGCAATTCAAGGTTCAGATTTACA 60.336 40.000 0.00 0.00 0.00 2.41
3653 4541 6.454795 GGCAATTCAAGGTTCAGATTTACAA 58.545 36.000 0.00 0.00 0.00 2.41
3654 4542 6.366061 GGCAATTCAAGGTTCAGATTTACAAC 59.634 38.462 0.00 0.00 0.00 3.32
3655 4543 7.147976 GCAATTCAAGGTTCAGATTTACAACT 58.852 34.615 0.00 0.00 0.00 3.16
3656 4544 7.653311 GCAATTCAAGGTTCAGATTTACAACTT 59.347 33.333 0.00 0.00 0.00 2.66
3657 4545 8.971321 CAATTCAAGGTTCAGATTTACAACTTG 58.029 33.333 0.00 0.00 0.00 3.16
3658 4546 7.873719 TTCAAGGTTCAGATTTACAACTTGA 57.126 32.000 0.00 0.00 0.00 3.02
3659 4547 8.463930 TTCAAGGTTCAGATTTACAACTTGAT 57.536 30.769 0.00 0.00 0.00 2.57
3660 4548 9.567776 TTCAAGGTTCAGATTTACAACTTGATA 57.432 29.630 0.00 0.00 0.00 2.15
3661 4549 9.739276 TCAAGGTTCAGATTTACAACTTGATAT 57.261 29.630 0.00 0.00 0.00 1.63
3662 4550 9.994432 CAAGGTTCAGATTTACAACTTGATATC 57.006 33.333 0.00 0.00 0.00 1.63
3663 4551 9.965902 AAGGTTCAGATTTACAACTTGATATCT 57.034 29.630 3.98 0.00 0.00 1.98
3667 4555 8.575565 TCAGATTTACAACTTGATATCTACGC 57.424 34.615 3.98 0.00 0.00 4.42
3668 4556 8.194769 TCAGATTTACAACTTGATATCTACGCA 58.805 33.333 3.98 0.00 0.00 5.24
3669 4557 8.982685 CAGATTTACAACTTGATATCTACGCAT 58.017 33.333 3.98 0.00 0.00 4.73
3670 4558 9.197694 AGATTTACAACTTGATATCTACGCATC 57.802 33.333 3.98 0.00 0.00 3.91
3671 4559 6.986424 TTACAACTTGATATCTACGCATCG 57.014 37.500 3.98 0.00 0.00 3.84
3672 4560 4.299155 ACAACTTGATATCTACGCATCGG 58.701 43.478 3.98 0.00 0.00 4.18
3673 4561 4.202121 ACAACTTGATATCTACGCATCGGT 60.202 41.667 3.98 0.00 0.00 4.69
3674 4562 5.009310 ACAACTTGATATCTACGCATCGGTA 59.991 40.000 3.98 0.00 0.00 4.02
3675 4563 5.298197 ACTTGATATCTACGCATCGGTAG 57.702 43.478 3.98 0.00 40.98 3.18
3676 4564 4.760715 ACTTGATATCTACGCATCGGTAGT 59.239 41.667 3.98 0.00 40.58 2.73
3677 4565 4.941325 TGATATCTACGCATCGGTAGTC 57.059 45.455 3.98 0.00 40.58 2.59
3678 4566 4.320870 TGATATCTACGCATCGGTAGTCA 58.679 43.478 3.98 0.00 40.58 3.41
3679 4567 4.941873 TGATATCTACGCATCGGTAGTCAT 59.058 41.667 3.98 0.00 40.58 3.06
3680 4568 6.110707 TGATATCTACGCATCGGTAGTCATA 58.889 40.000 3.98 0.00 40.58 2.15
3681 4569 4.681835 ATCTACGCATCGGTAGTCATAC 57.318 45.455 0.26 0.00 40.58 2.39
3682 4570 3.736720 TCTACGCATCGGTAGTCATACT 58.263 45.455 0.26 0.00 40.58 2.12
3683 4571 2.776312 ACGCATCGGTAGTCATACTG 57.224 50.000 0.00 0.00 39.31 2.74
3684 4572 2.022195 ACGCATCGGTAGTCATACTGT 58.978 47.619 0.00 0.00 39.06 3.55
3686 4574 3.250280 ACGCATCGGTAGTCATACTGTAG 59.750 47.826 0.00 0.00 39.06 2.74
3689 4577 5.589192 GCATCGGTAGTCATACTGTAGTTT 58.411 41.667 0.00 0.00 39.06 2.66
3731 4619 8.421249 TTTTTCATCTCCATGGATTGTTTACT 57.579 30.769 16.63 0.00 0.00 2.24
3734 4622 7.194112 TCATCTCCATGGATTGTTTACTGTA 57.806 36.000 16.63 0.00 0.00 2.74
3735 4623 7.805163 TCATCTCCATGGATTGTTTACTGTAT 58.195 34.615 16.63 0.00 0.00 2.29
3736 4624 8.274322 TCATCTCCATGGATTGTTTACTGTATT 58.726 33.333 16.63 0.00 0.00 1.89
3737 4625 8.906867 CATCTCCATGGATTGTTTACTGTATTT 58.093 33.333 16.63 0.00 0.00 1.40
3738 4626 8.279970 TCTCCATGGATTGTTTACTGTATTTG 57.720 34.615 16.63 0.00 0.00 2.32
3739 4627 6.862209 TCCATGGATTGTTTACTGTATTTGC 58.138 36.000 11.44 0.00 0.00 3.68
3740 4628 6.042143 CCATGGATTGTTTACTGTATTTGCC 58.958 40.000 5.56 0.00 0.00 4.52
3741 4629 6.350864 CCATGGATTGTTTACTGTATTTGCCA 60.351 38.462 5.56 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.204146 TTCTTCCTCCATCCCCTTCG 58.796 55.000 0.00 0.00 0.00 3.79
224 225 8.055279 AGACAAATATGAAATCACCGTTGAAT 57.945 30.769 0.00 0.00 34.61 2.57
249 250 9.847224 AAAAGACTACTAAATCAGAGTTGGAAA 57.153 29.630 0.44 0.00 0.00 3.13
479 558 4.990526 ACAGGAACAAGAATCAGAATGGT 58.009 39.130 0.00 0.00 36.16 3.55
1869 2720 3.129988 AGAATGTGCTCCTAATTTGCTGC 59.870 43.478 0.00 0.00 0.00 5.25
2159 3013 5.064325 ACGAAAAGTTTGTAACCTGACTGAC 59.936 40.000 0.00 0.00 0.00 3.51
2358 3213 5.403166 CACAACATGCAAGGTTTTGATACTG 59.597 40.000 12.77 1.28 37.74 2.74
2541 3398 2.223144 CGAATCAAGGCAGAACGAACAA 59.777 45.455 0.00 0.00 0.00 2.83
2878 3736 7.052873 AGCTTGATTGTACAGAATTAGCTCAT 58.947 34.615 12.78 0.00 32.49 2.90
3329 4206 3.492102 ACTTGTGCTTCTCTTAGGCAA 57.508 42.857 0.00 0.00 37.73 4.52
3482 4361 6.490040 TGTAAATCTGAACTGAAGGGGAAAAG 59.510 38.462 0.00 0.00 0.00 2.27
3533 4412 2.332063 AGCGATATCCCCAACAACAG 57.668 50.000 0.00 0.00 0.00 3.16
3541 4420 5.562890 GCACAATTTCTAAAGCGATATCCCC 60.563 44.000 0.00 0.00 0.00 4.81
3545 4424 7.263100 TCATGCACAATTTCTAAAGCGATAT 57.737 32.000 0.00 0.00 0.00 1.63
3562 4441 5.297776 AGCTATAACAAAGGACATCATGCAC 59.702 40.000 0.00 0.00 0.00 4.57
3572 4452 8.943002 GCTGTAGTTAAAAGCTATAACAAAGGA 58.057 33.333 19.04 2.82 36.04 3.36
3591 4479 9.935241 CCAGAAGTAATATATGATTGCTGTAGT 57.065 33.333 0.89 0.00 0.00 2.73
3592 4480 9.935241 ACCAGAAGTAATATATGATTGCTGTAG 57.065 33.333 0.89 0.00 0.00 2.74
3594 4482 9.277783 GAACCAGAAGTAATATATGATTGCTGT 57.722 33.333 0.89 0.00 0.00 4.40
3595 4483 9.499479 AGAACCAGAAGTAATATATGATTGCTG 57.501 33.333 0.00 0.00 0.00 4.41
3596 4484 9.499479 CAGAACCAGAAGTAATATATGATTGCT 57.501 33.333 0.00 0.00 0.00 3.91
3597 4485 9.494271 TCAGAACCAGAAGTAATATATGATTGC 57.506 33.333 0.00 0.00 0.00 3.56
3611 4499 1.151668 CCGCACTTCAGAACCAGAAG 58.848 55.000 0.00 0.00 46.08 2.85
3622 4510 0.598065 ACCTTGAATTGCCGCACTTC 59.402 50.000 14.78 14.78 0.00 3.01
3633 4521 8.463930 TCAAGTTGTAAATCTGAACCTTGAAT 57.536 30.769 2.11 0.00 0.00 2.57
3644 4532 9.197694 GATGCGTAGATATCAAGTTGTAAATCT 57.802 33.333 5.32 16.16 0.00 2.40
3645 4533 8.156553 CGATGCGTAGATATCAAGTTGTAAATC 58.843 37.037 5.32 5.01 0.00 2.17
3646 4534 7.116376 CCGATGCGTAGATATCAAGTTGTAAAT 59.884 37.037 5.32 0.00 0.00 1.40
3647 4535 6.419710 CCGATGCGTAGATATCAAGTTGTAAA 59.580 38.462 5.32 0.00 0.00 2.01
3648 4536 5.918576 CCGATGCGTAGATATCAAGTTGTAA 59.081 40.000 5.32 0.00 0.00 2.41
3649 4537 5.009310 ACCGATGCGTAGATATCAAGTTGTA 59.991 40.000 5.32 0.00 0.00 2.41
3650 4538 4.202121 ACCGATGCGTAGATATCAAGTTGT 60.202 41.667 5.32 0.00 0.00 3.32
3651 4539 4.299155 ACCGATGCGTAGATATCAAGTTG 58.701 43.478 5.32 0.00 0.00 3.16
3652 4540 4.585955 ACCGATGCGTAGATATCAAGTT 57.414 40.909 5.32 0.00 0.00 2.66
3653 4541 4.760715 ACTACCGATGCGTAGATATCAAGT 59.239 41.667 5.32 0.00 38.41 3.16
3654 4542 5.106673 TGACTACCGATGCGTAGATATCAAG 60.107 44.000 5.32 0.00 38.41 3.02
3655 4543 4.758165 TGACTACCGATGCGTAGATATCAA 59.242 41.667 5.32 0.00 38.41 2.57
3656 4544 4.320870 TGACTACCGATGCGTAGATATCA 58.679 43.478 5.32 0.00 38.41 2.15
3657 4545 4.941325 TGACTACCGATGCGTAGATATC 57.059 45.455 2.90 0.00 38.41 1.63
3658 4546 6.037281 CAGTATGACTACCGATGCGTAGATAT 59.963 42.308 2.90 0.49 39.69 1.63
3659 4547 5.350640 CAGTATGACTACCGATGCGTAGATA 59.649 44.000 2.90 0.00 39.69 1.98
3660 4548 4.154375 CAGTATGACTACCGATGCGTAGAT 59.846 45.833 2.90 0.00 39.69 1.98
3661 4549 3.497262 CAGTATGACTACCGATGCGTAGA 59.503 47.826 2.90 0.00 39.69 2.59
3662 4550 3.250280 ACAGTATGACTACCGATGCGTAG 59.750 47.826 0.00 0.00 39.69 3.51
3663 4551 3.208594 ACAGTATGACTACCGATGCGTA 58.791 45.455 0.00 0.00 39.69 4.42
3664 4552 2.022195 ACAGTATGACTACCGATGCGT 58.978 47.619 0.00 0.00 39.69 5.24
3665 4553 2.776312 ACAGTATGACTACCGATGCG 57.224 50.000 0.00 0.00 39.69 4.73
3666 4554 4.832590 ACTACAGTATGACTACCGATGC 57.167 45.455 0.00 0.00 39.69 3.91
3707 4595 7.451255 ACAGTAAACAATCCATGGAGATGAAAA 59.549 33.333 28.15 14.40 0.00 2.29
3713 4601 7.148086 GCAAATACAGTAAACAATCCATGGAGA 60.148 37.037 21.33 0.00 0.00 3.71
3714 4602 6.974622 GCAAATACAGTAAACAATCCATGGAG 59.025 38.462 21.33 10.10 0.00 3.86
3715 4603 6.127479 GGCAAATACAGTAAACAATCCATGGA 60.127 38.462 18.88 18.88 0.00 3.41
3716 4604 6.042143 GGCAAATACAGTAAACAATCCATGG 58.958 40.000 4.97 4.97 0.00 3.66
3717 4605 6.629128 TGGCAAATACAGTAAACAATCCATG 58.371 36.000 0.00 0.00 0.00 3.66
3719 4607 6.849085 ATGGCAAATACAGTAAACAATCCA 57.151 33.333 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.