Multiple sequence alignment - TraesCS5A01G352200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G352200 chr5A 100.000 2660 0 0 1 2660 554299386 554302045 0.000000e+00 4913.0
1 TraesCS5A01G352200 chr5A 98.864 1849 18 2 1 1849 566607789 566609634 0.000000e+00 3295.0
2 TraesCS5A01G352200 chr5A 89.412 425 30 6 1917 2334 554290509 554290925 3.030000e-144 521.0
3 TraesCS5A01G352200 chr5A 87.938 257 26 4 2368 2622 362172643 362172390 5.570000e-77 298.0
4 TraesCS5A01G352200 chr5A 85.246 122 17 1 1905 2025 554560355 554560476 1.000000e-24 124.0
5 TraesCS5A01G352200 chr5A 91.803 61 1 2 1850 1910 554304407 554304351 6.100000e-12 82.4
6 TraesCS5A01G352200 chrUn 98.110 1852 35 0 1 1852 1184488 1182637 0.000000e+00 3227.0
7 TraesCS5A01G352200 chrUn 97.632 1309 27 1 541 1849 338574386 338575690 0.000000e+00 2242.0
8 TraesCS5A01G352200 chrUn 97.632 1309 25 3 541 1849 329520113 329518811 0.000000e+00 2241.0
9 TraesCS5A01G352200 chrUn 97.632 1309 25 3 541 1849 329529157 329530459 0.000000e+00 2241.0
10 TraesCS5A01G352200 chr7A 97.518 1853 36 4 1 1852 43040845 43039002 0.000000e+00 3158.0
11 TraesCS5A01G352200 chr7A 97.514 1850 41 2 1 1849 75598003 75599848 0.000000e+00 3157.0
12 TraesCS5A01G352200 chr7A 97.785 1309 25 2 541 1849 75607021 75608325 0.000000e+00 2254.0
13 TraesCS5A01G352200 chr7A 97.785 1309 25 2 541 1849 75608324 75609628 0.000000e+00 2254.0
14 TraesCS5A01G352200 chr2A 81.714 1657 284 11 5 1653 768615449 768617094 0.000000e+00 1363.0
15 TraesCS5A01G352200 chr3D 74.043 1645 392 33 5 1636 538179756 538178134 8.030000e-180 640.0
16 TraesCS5A01G352200 chr3D 78.228 666 126 10 85 742 585177607 585176953 2.460000e-110 409.0
17 TraesCS5A01G352200 chr1D 73.905 1644 396 31 5 1636 463533052 463531430 1.740000e-176 628.0
18 TraesCS5A01G352200 chr1D 89.494 257 25 2 2367 2622 479740197 479740452 9.180000e-85 324.0
19 TraesCS5A01G352200 chr1D 98.295 176 2 1 1 176 468026687 468026861 9.250000e-80 307.0
20 TraesCS5A01G352200 chr5D 73.828 1643 393 34 5 1633 322187860 322189479 3.760000e-173 617.0
21 TraesCS5A01G352200 chr5D 91.009 456 32 4 1911 2366 438781848 438782294 8.140000e-170 606.0
22 TraesCS5A01G352200 chr5D 90.632 459 33 4 1908 2366 438828815 438829263 3.790000e-168 601.0
23 TraesCS5A01G352200 chr5D 83.550 462 48 11 1908 2364 438825291 438825729 8.860000e-110 407.0
24 TraesCS5A01G352200 chr5D 89.723 253 18 2 1911 2163 438921104 438921348 1.540000e-82 316.0
25 TraesCS5A01G352200 chr5D 88.148 135 7 3 2056 2190 438810466 438810591 4.590000e-33 152.0
26 TraesCS5A01G352200 chr5D 94.872 78 4 0 2271 2348 438921344 438921421 3.600000e-24 122.0
27 TraesCS5A01G352200 chr5D 92.063 63 1 2 1848 1910 438783786 438783728 4.720000e-13 86.1
28 TraesCS5A01G352200 chr5B 90.632 459 29 4 1908 2366 534022315 534022759 4.900000e-167 597.0
29 TraesCS5A01G352200 chr5B 88.889 432 30 5 1911 2334 533752554 533752975 1.410000e-142 516.0
30 TraesCS5A01G352200 chr5B 82.505 463 60 10 1908 2364 534012703 534013150 1.150000e-103 387.0
31 TraesCS5A01G352200 chr5B 92.195 205 11 2 2163 2367 533989650 533989849 4.330000e-73 285.0
32 TraesCS5A01G352200 chr5B 79.176 461 49 24 1915 2367 533980585 533981006 2.610000e-70 276.0
33 TraesCS5A01G352200 chr5B 85.321 109 8 2 2056 2164 533984353 533984453 3.620000e-19 106.0
34 TraesCS5A01G352200 chr5B 90.164 61 2 2 1850 1910 534024210 534024154 2.840000e-10 76.8
35 TraesCS5A01G352200 chr6B 90.152 264 21 4 2360 2621 354318274 354318534 3.280000e-89 339.0
36 TraesCS5A01G352200 chr6B 87.984 258 28 3 2367 2622 480831432 480831176 4.300000e-78 302.0
37 TraesCS5A01G352200 chr6B 87.739 261 27 5 2366 2622 688871935 688871676 1.550000e-77 300.0
38 TraesCS5A01G352200 chr3A 89.575 259 24 3 2366 2622 60295170 60295427 2.550000e-85 326.0
39 TraesCS5A01G352200 chr7D 88.372 258 25 4 2367 2622 219898466 219898212 3.330000e-79 305.0
40 TraesCS5A01G352200 chr7D 87.984 258 29 2 2366 2622 538167346 538167602 1.200000e-78 303.0
41 TraesCS5A01G352200 chr7D 83.465 127 19 1 20 146 167522494 167522370 1.670000e-22 117.0
42 TraesCS5A01G352200 chr4B 88.031 259 27 4 2367 2622 647599149 647599406 1.200000e-78 303.0
43 TraesCS5A01G352200 chr1A 93.750 48 2 1 2613 2660 588020867 588020913 1.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G352200 chr5A 554299386 554302045 2659 False 4913 4913 100.000 1 2660 1 chr5A.!!$F2 2659
1 TraesCS5A01G352200 chr5A 566607789 566609634 1845 False 3295 3295 98.864 1 1849 1 chr5A.!!$F4 1848
2 TraesCS5A01G352200 chrUn 1182637 1184488 1851 True 3227 3227 98.110 1 1852 1 chrUn.!!$R1 1851
3 TraesCS5A01G352200 chrUn 338574386 338575690 1304 False 2242 2242 97.632 541 1849 1 chrUn.!!$F2 1308
4 TraesCS5A01G352200 chrUn 329518811 329520113 1302 True 2241 2241 97.632 541 1849 1 chrUn.!!$R2 1308
5 TraesCS5A01G352200 chrUn 329529157 329530459 1302 False 2241 2241 97.632 541 1849 1 chrUn.!!$F1 1308
6 TraesCS5A01G352200 chr7A 43039002 43040845 1843 True 3158 3158 97.518 1 1852 1 chr7A.!!$R1 1851
7 TraesCS5A01G352200 chr7A 75598003 75599848 1845 False 3157 3157 97.514 1 1849 1 chr7A.!!$F1 1848
8 TraesCS5A01G352200 chr7A 75607021 75609628 2607 False 2254 2254 97.785 541 1849 2 chr7A.!!$F2 1308
9 TraesCS5A01G352200 chr2A 768615449 768617094 1645 False 1363 1363 81.714 5 1653 1 chr2A.!!$F1 1648
10 TraesCS5A01G352200 chr3D 538178134 538179756 1622 True 640 640 74.043 5 1636 1 chr3D.!!$R1 1631
11 TraesCS5A01G352200 chr3D 585176953 585177607 654 True 409 409 78.228 85 742 1 chr3D.!!$R2 657
12 TraesCS5A01G352200 chr1D 463531430 463533052 1622 True 628 628 73.905 5 1636 1 chr1D.!!$R1 1631
13 TraesCS5A01G352200 chr5D 322187860 322189479 1619 False 617 617 73.828 5 1633 1 chr5D.!!$F1 1628
14 TraesCS5A01G352200 chr5D 438825291 438829263 3972 False 504 601 87.091 1908 2366 2 chr5D.!!$F4 458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 534 5.491982 ACATGGCAAAAACTTGTGGTAAAA 58.508 33.333 0.0 0.0 0.0 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 4089 0.035317 TTGTCAAGATGCTGGCGTCT 59.965 50.0 11.07 11.07 43.46 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
526 534 5.491982 ACATGGCAAAAACTTGTGGTAAAA 58.508 33.333 0.00 0.00 0.00 1.52
1376 2692 5.418524 TCATTCCAAATGATAATATGGGGCG 59.581 40.000 0.00 0.00 33.66 6.13
1390 2706 0.472471 GGGGCGGGTTGATATCTTGA 59.528 55.000 3.98 0.00 0.00 3.02
1615 2935 8.854117 GGGTTGCTTATGAAGATCTAATTGAAT 58.146 33.333 0.00 0.00 0.00 2.57
1799 3120 6.388619 ACTTGACTTTCTTATACATGGGGT 57.611 37.500 0.00 0.00 0.00 4.95
1852 3173 1.362717 CGAGGTACGGCCCTGTATG 59.637 63.158 0.00 0.00 38.26 2.39
1853 3174 1.105167 CGAGGTACGGCCCTGTATGA 61.105 60.000 0.00 0.00 38.26 2.15
1855 3176 1.069258 GGTACGGCCCTGTATGAGC 59.931 63.158 0.00 0.00 0.00 4.26
1856 3177 1.682451 GGTACGGCCCTGTATGAGCA 61.682 60.000 0.00 0.00 0.00 4.26
1857 3178 0.177141 GTACGGCCCTGTATGAGCAA 59.823 55.000 0.00 0.00 0.00 3.91
1858 3179 1.128200 TACGGCCCTGTATGAGCAAT 58.872 50.000 0.00 0.00 0.00 3.56
1859 3180 0.255890 ACGGCCCTGTATGAGCAATT 59.744 50.000 0.00 0.00 0.00 2.32
1860 3181 1.340991 ACGGCCCTGTATGAGCAATTT 60.341 47.619 0.00 0.00 0.00 1.82
1861 3182 1.750778 CGGCCCTGTATGAGCAATTTT 59.249 47.619 0.00 0.00 0.00 1.82
1864 3185 3.954258 GGCCCTGTATGAGCAATTTTACT 59.046 43.478 0.00 0.00 0.00 2.24
1865 3186 4.036852 GGCCCTGTATGAGCAATTTTACTC 59.963 45.833 0.00 0.00 0.00 2.59
1866 3187 4.884164 GCCCTGTATGAGCAATTTTACTCT 59.116 41.667 0.00 0.00 33.92 3.24
1867 3188 5.220931 GCCCTGTATGAGCAATTTTACTCTG 60.221 44.000 0.00 0.00 33.92 3.35
1868 3189 5.882557 CCCTGTATGAGCAATTTTACTCTGT 59.117 40.000 0.00 0.00 33.92 3.41
1869 3190 6.375455 CCCTGTATGAGCAATTTTACTCTGTT 59.625 38.462 0.00 0.00 33.92 3.16
1870 3191 7.552687 CCCTGTATGAGCAATTTTACTCTGTTA 59.447 37.037 0.00 0.00 33.92 2.41
1871 3192 8.607459 CCTGTATGAGCAATTTTACTCTGTTAG 58.393 37.037 0.00 0.00 33.92 2.34
1872 3193 7.974675 TGTATGAGCAATTTTACTCTGTTAGC 58.025 34.615 0.00 0.00 33.92 3.09
1873 3194 5.880054 TGAGCAATTTTACTCTGTTAGCC 57.120 39.130 0.00 0.00 33.92 3.93
1874 3195 4.700213 TGAGCAATTTTACTCTGTTAGCCC 59.300 41.667 0.00 0.00 33.92 5.19
1875 3196 4.017126 AGCAATTTTACTCTGTTAGCCCC 58.983 43.478 0.00 0.00 0.00 5.80
1876 3197 3.761752 GCAATTTTACTCTGTTAGCCCCA 59.238 43.478 0.00 0.00 0.00 4.96
1877 3198 4.380550 GCAATTTTACTCTGTTAGCCCCAC 60.381 45.833 0.00 0.00 0.00 4.61
1878 3199 4.650972 ATTTTACTCTGTTAGCCCCACA 57.349 40.909 0.00 0.00 0.00 4.17
1879 3200 4.440826 TTTTACTCTGTTAGCCCCACAA 57.559 40.909 0.00 0.00 0.00 3.33
1883 3204 1.073923 CTCTGTTAGCCCCACAAGGTT 59.926 52.381 0.00 0.00 0.00 3.50
1884 3205 2.304761 CTCTGTTAGCCCCACAAGGTTA 59.695 50.000 0.00 0.00 0.00 2.85
1885 3206 2.712087 TCTGTTAGCCCCACAAGGTTAA 59.288 45.455 0.00 0.00 30.95 2.01
1886 3207 3.138653 TCTGTTAGCCCCACAAGGTTAAA 59.861 43.478 0.00 0.00 34.78 1.52
1888 3209 2.823747 GTTAGCCCCACAAGGTTAAAGG 59.176 50.000 0.00 0.00 34.78 3.11
1889 3210 0.857675 AGCCCCACAAGGTTAAAGGT 59.142 50.000 0.00 0.00 0.00 3.50
1890 3211 2.067386 AGCCCCACAAGGTTAAAGGTA 58.933 47.619 0.00 0.00 0.00 3.08
1891 3212 2.165167 GCCCCACAAGGTTAAAGGTAC 58.835 52.381 0.00 0.00 0.00 3.34
1910 3231 7.370905 AGGTACTTCAGTTAACTGGTAGTTT 57.629 36.000 31.12 21.14 43.91 2.66
1911 3232 7.215085 AGGTACTTCAGTTAACTGGTAGTTTG 58.785 38.462 31.12 19.03 43.91 2.93
1951 3569 5.820404 TCAGCTGATGGATAAGATCATGT 57.180 39.130 13.74 0.00 0.00 3.21
1952 3570 5.548406 TCAGCTGATGGATAAGATCATGTG 58.452 41.667 13.74 0.00 0.00 3.21
1976 3594 6.425721 TGGAATCTCCACGTGTTAGTTTTAAG 59.574 38.462 15.65 0.00 42.67 1.85
1982 3600 5.702209 TCCACGTGTTAGTTTTAAGAATCCC 59.298 40.000 15.65 0.00 0.00 3.85
1985 3603 5.178067 ACGTGTTAGTTTTAAGAATCCCACG 59.822 40.000 12.84 12.84 45.16 4.94
2027 3645 5.115480 GTGTTGAAAAGAAAGAAATGGGCA 58.885 37.500 0.00 0.00 0.00 5.36
2054 3672 6.511767 CGATACATGCTTGTTTAATCCTGTCC 60.512 42.308 10.85 0.00 37.28 4.02
2058 3676 4.479158 TGCTTGTTTAATCCTGTCCCTTT 58.521 39.130 0.00 0.00 0.00 3.11
2062 3680 6.295292 GCTTGTTTAATCCTGTCCCTTTCAAT 60.295 38.462 0.00 0.00 0.00 2.57
2063 3681 7.610580 TTGTTTAATCCTGTCCCTTTCAATT 57.389 32.000 0.00 0.00 0.00 2.32
2064 3682 7.610580 TGTTTAATCCTGTCCCTTTCAATTT 57.389 32.000 0.00 0.00 0.00 1.82
2065 3683 8.028652 TGTTTAATCCTGTCCCTTTCAATTTT 57.971 30.769 0.00 0.00 0.00 1.82
2099 3717 3.839979 CCTTGTTGGGAACTTGGGA 57.160 52.632 0.00 0.00 0.00 4.37
2121 3739 1.475751 GGTGCCTTGTCCGATGATGAT 60.476 52.381 0.00 0.00 0.00 2.45
2123 3741 3.466836 GTGCCTTGTCCGATGATGATAA 58.533 45.455 0.00 0.00 0.00 1.75
2124 3742 3.876914 GTGCCTTGTCCGATGATGATAAA 59.123 43.478 0.00 0.00 0.00 1.40
2128 3746 6.096705 TGCCTTGTCCGATGATGATAAATTTT 59.903 34.615 0.00 0.00 0.00 1.82
2180 3798 4.018141 TGGTTCAAGTCTGAATGATCCCAT 60.018 41.667 14.45 0.00 43.39 4.00
2183 3801 3.781965 TCAAGTCTGAATGATCCCATGGA 59.218 43.478 15.22 0.00 35.55 3.41
2293 3911 4.378459 GGTTCGTCCTTGTGAATTGTGATC 60.378 45.833 0.00 0.00 0.00 2.92
2341 3959 3.117589 CAGCAAATGTTGGAGCTGC 57.882 52.632 0.00 0.00 46.51 5.25
2354 3972 1.340405 GGAGCTGCCAGGAAGATTCAA 60.340 52.381 0.00 0.00 36.34 2.69
2356 3974 3.434167 GGAGCTGCCAGGAAGATTCAATA 60.434 47.826 0.00 0.00 36.34 1.90
2366 3984 7.014038 GCCAGGAAGATTCAATATTCTTGTCAT 59.986 37.037 13.92 0.00 36.29 3.06
2367 3985 8.910944 CCAGGAAGATTCAATATTCTTGTCATT 58.089 33.333 13.92 0.00 36.29 2.57
2390 4008 6.911250 TTTTTAGAAAAAGAGGATGACCCC 57.089 37.500 0.00 0.00 33.29 4.95
2391 4009 5.592587 TTTAGAAAAAGAGGATGACCCCA 57.407 39.130 0.00 0.00 36.73 4.96
2392 4010 3.728385 AGAAAAAGAGGATGACCCCAG 57.272 47.619 0.00 0.00 36.73 4.45
2393 4011 2.095461 GAAAAAGAGGATGACCCCAGC 58.905 52.381 0.00 0.00 36.73 4.85
2398 4016 2.914289 GGATGACCCCAGCCTCTG 59.086 66.667 0.00 0.00 45.12 3.35
2399 4017 2.191641 GATGACCCCAGCCTCTGC 59.808 66.667 0.00 0.00 37.95 4.26
2400 4018 2.611800 ATGACCCCAGCCTCTGCA 60.612 61.111 0.00 0.00 41.13 4.41
2401 4019 1.992519 GATGACCCCAGCCTCTGCAT 61.993 60.000 0.00 0.00 41.13 3.96
2402 4020 1.992519 ATGACCCCAGCCTCTGCATC 61.993 60.000 0.00 0.00 41.13 3.91
2403 4021 2.285969 ACCCCAGCCTCTGCATCT 60.286 61.111 0.00 0.00 41.13 2.90
2404 4022 2.322638 GACCCCAGCCTCTGCATCTC 62.323 65.000 0.00 0.00 41.13 2.75
2405 4023 2.108566 CCCAGCCTCTGCATCTCG 59.891 66.667 0.00 0.00 41.13 4.04
2406 4024 2.108566 CCAGCCTCTGCATCTCGG 59.891 66.667 0.00 0.00 41.13 4.63
2407 4025 2.588314 CAGCCTCTGCATCTCGGC 60.588 66.667 7.40 7.40 42.79 5.54
2408 4026 4.218578 AGCCTCTGCATCTCGGCG 62.219 66.667 0.00 0.00 46.85 6.46
2409 4027 4.212913 GCCTCTGCATCTCGGCGA 62.213 66.667 10.14 10.14 37.47 5.54
2410 4028 2.733301 CCTCTGCATCTCGGCGAT 59.267 61.111 11.27 0.00 36.28 4.58
2416 4034 2.554775 CATCTCGGCGATGCATGC 59.445 61.111 11.27 11.82 42.75 4.06
2417 4035 2.109593 ATCTCGGCGATGCATGCA 59.890 55.556 25.04 25.04 0.00 3.96
2418 4036 1.524393 ATCTCGGCGATGCATGCAA 60.524 52.632 26.68 8.49 0.00 4.08
2419 4037 1.779025 ATCTCGGCGATGCATGCAAC 61.779 55.000 26.68 21.63 0.00 4.17
2420 4038 3.459378 CTCGGCGATGCATGCAACC 62.459 63.158 26.68 23.64 0.00 3.77
2421 4039 3.813143 CGGCGATGCATGCAACCA 61.813 61.111 26.68 0.00 0.00 3.67
2422 4040 2.809706 GGCGATGCATGCAACCAT 59.190 55.556 26.68 8.07 0.00 3.55
2423 4041 1.142314 GGCGATGCATGCAACCATT 59.858 52.632 26.68 7.61 0.00 3.16
2424 4042 0.460635 GGCGATGCATGCAACCATTT 60.461 50.000 26.68 6.72 0.00 2.32
2425 4043 1.361793 GCGATGCATGCAACCATTTT 58.638 45.000 26.68 5.83 0.00 1.82
2426 4044 2.538437 GCGATGCATGCAACCATTTTA 58.462 42.857 26.68 0.00 0.00 1.52
2427 4045 3.125316 GCGATGCATGCAACCATTTTAT 58.875 40.909 26.68 4.06 0.00 1.40
2428 4046 3.556775 GCGATGCATGCAACCATTTTATT 59.443 39.130 26.68 3.17 0.00 1.40
2429 4047 4.744137 GCGATGCATGCAACCATTTTATTA 59.256 37.500 26.68 0.00 0.00 0.98
2430 4048 5.233902 GCGATGCATGCAACCATTTTATTAA 59.766 36.000 26.68 0.00 0.00 1.40
2431 4049 6.073657 GCGATGCATGCAACCATTTTATTAAT 60.074 34.615 26.68 1.78 0.00 1.40
2432 4050 7.518689 GCGATGCATGCAACCATTTTATTAATT 60.519 33.333 26.68 1.01 0.00 1.40
2433 4051 8.976471 CGATGCATGCAACCATTTTATTAATTA 58.024 29.630 26.68 0.00 0.00 1.40
2460 4078 9.616156 TTCACAAAGACCTTACAAAGTTATACA 57.384 29.630 0.00 0.00 0.00 2.29
2461 4079 9.787435 TCACAAAGACCTTACAAAGTTATACAT 57.213 29.630 0.00 0.00 0.00 2.29
2463 4081 9.787435 ACAAAGACCTTACAAAGTTATACATCA 57.213 29.630 0.00 0.00 0.00 3.07
2469 4087 9.880157 ACCTTACAAAGTTATACATCAATACGT 57.120 29.630 0.00 0.00 0.00 3.57
2474 4092 9.084164 ACAAAGTTATACATCAATACGTCAGAC 57.916 33.333 0.00 0.00 0.00 3.51
2484 4102 2.182791 CGTCAGACGCCAGCATCT 59.817 61.111 10.66 0.00 33.65 2.90
2485 4103 1.446792 CGTCAGACGCCAGCATCTT 60.447 57.895 10.66 0.00 33.65 2.40
2486 4104 1.690283 CGTCAGACGCCAGCATCTTG 61.690 60.000 10.66 0.00 33.65 3.02
2487 4105 0.390340 GTCAGACGCCAGCATCTTGA 60.390 55.000 0.00 0.00 0.00 3.02
2488 4106 0.390340 TCAGACGCCAGCATCTTGAC 60.390 55.000 0.00 0.00 0.00 3.18
2489 4107 0.671472 CAGACGCCAGCATCTTGACA 60.671 55.000 0.00 0.00 0.00 3.58
2490 4108 0.035317 AGACGCCAGCATCTTGACAA 59.965 50.000 0.00 0.00 0.00 3.18
2491 4109 0.166814 GACGCCAGCATCTTGACAAC 59.833 55.000 0.00 0.00 0.00 3.32
2492 4110 0.534877 ACGCCAGCATCTTGACAACA 60.535 50.000 0.00 0.00 0.00 3.33
2493 4111 0.806868 CGCCAGCATCTTGACAACAT 59.193 50.000 0.00 0.00 0.00 2.71
2494 4112 1.202110 CGCCAGCATCTTGACAACATC 60.202 52.381 0.00 0.00 0.00 3.06
2495 4113 2.089980 GCCAGCATCTTGACAACATCT 58.910 47.619 0.00 0.00 0.00 2.90
2496 4114 2.159421 GCCAGCATCTTGACAACATCTG 60.159 50.000 0.00 0.00 0.00 2.90
2497 4115 3.079578 CCAGCATCTTGACAACATCTGT 58.920 45.455 0.00 0.00 42.61 3.41
2506 4124 2.531206 GACAACATCTGTCGCTACTCC 58.469 52.381 0.00 0.00 44.95 3.85
2507 4125 2.164624 GACAACATCTGTCGCTACTCCT 59.835 50.000 0.00 0.00 44.95 3.69
2508 4126 3.353557 ACAACATCTGTCGCTACTCCTA 58.646 45.455 0.00 0.00 29.87 2.94
2509 4127 3.954904 ACAACATCTGTCGCTACTCCTAT 59.045 43.478 0.00 0.00 29.87 2.57
2510 4128 4.036971 ACAACATCTGTCGCTACTCCTATC 59.963 45.833 0.00 0.00 29.87 2.08
2511 4129 3.150767 ACATCTGTCGCTACTCCTATCC 58.849 50.000 0.00 0.00 0.00 2.59
2512 4130 3.149981 CATCTGTCGCTACTCCTATCCA 58.850 50.000 0.00 0.00 0.00 3.41
2513 4131 3.510531 TCTGTCGCTACTCCTATCCAT 57.489 47.619 0.00 0.00 0.00 3.41
2514 4132 3.833732 TCTGTCGCTACTCCTATCCATT 58.166 45.455 0.00 0.00 0.00 3.16
2515 4133 3.570125 TCTGTCGCTACTCCTATCCATTG 59.430 47.826 0.00 0.00 0.00 2.82
2516 4134 3.562182 TGTCGCTACTCCTATCCATTGA 58.438 45.455 0.00 0.00 0.00 2.57
2517 4135 4.152647 TGTCGCTACTCCTATCCATTGAT 58.847 43.478 0.00 0.00 34.87 2.57
2518 4136 4.021981 TGTCGCTACTCCTATCCATTGATG 60.022 45.833 0.00 0.00 32.18 3.07
2519 4137 4.218635 GTCGCTACTCCTATCCATTGATGA 59.781 45.833 0.00 0.00 32.18 2.92
2520 4138 4.832823 TCGCTACTCCTATCCATTGATGAA 59.167 41.667 0.00 0.00 32.18 2.57
2521 4139 5.047731 TCGCTACTCCTATCCATTGATGAAG 60.048 44.000 0.00 0.00 32.18 3.02
2522 4140 5.486526 GCTACTCCTATCCATTGATGAAGG 58.513 45.833 0.00 0.00 32.18 3.46
2523 4141 4.989875 ACTCCTATCCATTGATGAAGGG 57.010 45.455 0.00 0.00 34.07 3.95
2524 4142 4.310740 ACTCCTATCCATTGATGAAGGGT 58.689 43.478 0.00 0.00 34.44 4.34
2525 4143 4.103785 ACTCCTATCCATTGATGAAGGGTG 59.896 45.833 0.00 0.00 34.44 4.61
2526 4144 3.152341 CCTATCCATTGATGAAGGGTGC 58.848 50.000 0.00 0.00 34.44 5.01
2527 4145 2.832643 ATCCATTGATGAAGGGTGCA 57.167 45.000 0.00 0.00 34.44 4.57
2528 4146 2.133281 TCCATTGATGAAGGGTGCAG 57.867 50.000 0.00 0.00 34.44 4.41
2529 4147 1.634973 TCCATTGATGAAGGGTGCAGA 59.365 47.619 0.00 0.00 34.44 4.26
2530 4148 2.041485 TCCATTGATGAAGGGTGCAGAA 59.959 45.455 0.00 0.00 34.44 3.02
2531 4149 2.827322 CCATTGATGAAGGGTGCAGAAA 59.173 45.455 0.00 0.00 0.00 2.52
2532 4150 3.119245 CCATTGATGAAGGGTGCAGAAAG 60.119 47.826 0.00 0.00 0.00 2.62
2533 4151 2.957402 TGATGAAGGGTGCAGAAAGT 57.043 45.000 0.00 0.00 0.00 2.66
2534 4152 2.507484 TGATGAAGGGTGCAGAAAGTG 58.493 47.619 0.00 0.00 0.00 3.16
2535 4153 2.158623 TGATGAAGGGTGCAGAAAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
2536 4154 1.679139 TGAAGGGTGCAGAAAGTGTG 58.321 50.000 0.00 0.00 0.00 3.82
2537 4155 1.211703 TGAAGGGTGCAGAAAGTGTGA 59.788 47.619 0.00 0.00 0.00 3.58
2538 4156 1.876156 GAAGGGTGCAGAAAGTGTGAG 59.124 52.381 0.00 0.00 0.00 3.51
2539 4157 0.536006 AGGGTGCAGAAAGTGTGAGC 60.536 55.000 0.00 0.00 0.00 4.26
2540 4158 1.518903 GGGTGCAGAAAGTGTGAGCC 61.519 60.000 0.00 0.00 0.00 4.70
2541 4159 1.571460 GTGCAGAAAGTGTGAGCCG 59.429 57.895 0.00 0.00 0.00 5.52
2542 4160 0.880278 GTGCAGAAAGTGTGAGCCGA 60.880 55.000 0.00 0.00 0.00 5.54
2543 4161 0.179059 TGCAGAAAGTGTGAGCCGAA 60.179 50.000 0.00 0.00 0.00 4.30
2544 4162 1.160137 GCAGAAAGTGTGAGCCGAAT 58.840 50.000 0.00 0.00 0.00 3.34
2545 4163 2.289382 TGCAGAAAGTGTGAGCCGAATA 60.289 45.455 0.00 0.00 0.00 1.75
2546 4164 2.094417 GCAGAAAGTGTGAGCCGAATAC 59.906 50.000 0.00 0.00 0.00 1.89
2547 4165 2.673368 CAGAAAGTGTGAGCCGAATACC 59.327 50.000 0.00 0.00 0.00 2.73
2548 4166 2.007608 GAAAGTGTGAGCCGAATACCC 58.992 52.381 0.00 0.00 0.00 3.69
2549 4167 0.981183 AAGTGTGAGCCGAATACCCA 59.019 50.000 0.00 0.00 0.00 4.51
2550 4168 0.537188 AGTGTGAGCCGAATACCCAG 59.463 55.000 0.00 0.00 0.00 4.45
2551 4169 0.535335 GTGTGAGCCGAATACCCAGA 59.465 55.000 0.00 0.00 0.00 3.86
2552 4170 0.535335 TGTGAGCCGAATACCCAGAC 59.465 55.000 0.00 0.00 0.00 3.51
2553 4171 0.824759 GTGAGCCGAATACCCAGACT 59.175 55.000 0.00 0.00 0.00 3.24
2554 4172 1.207329 GTGAGCCGAATACCCAGACTT 59.793 52.381 0.00 0.00 0.00 3.01
2555 4173 1.480954 TGAGCCGAATACCCAGACTTC 59.519 52.381 0.00 0.00 0.00 3.01
2556 4174 1.757699 GAGCCGAATACCCAGACTTCT 59.242 52.381 0.00 0.00 0.00 2.85
2557 4175 1.757699 AGCCGAATACCCAGACTTCTC 59.242 52.381 0.00 0.00 0.00 2.87
2558 4176 1.480954 GCCGAATACCCAGACTTCTCA 59.519 52.381 0.00 0.00 0.00 3.27
2559 4177 2.738964 GCCGAATACCCAGACTTCTCAC 60.739 54.545 0.00 0.00 0.00 3.51
2560 4178 2.159085 CCGAATACCCAGACTTCTCACC 60.159 54.545 0.00 0.00 0.00 4.02
2561 4179 2.761208 CGAATACCCAGACTTCTCACCT 59.239 50.000 0.00 0.00 0.00 4.00
2562 4180 3.952323 CGAATACCCAGACTTCTCACCTA 59.048 47.826 0.00 0.00 0.00 3.08
2563 4181 4.036971 CGAATACCCAGACTTCTCACCTAG 59.963 50.000 0.00 0.00 0.00 3.02
2564 4182 1.562783 ACCCAGACTTCTCACCTAGC 58.437 55.000 0.00 0.00 0.00 3.42
2565 4183 0.827368 CCCAGACTTCTCACCTAGCC 59.173 60.000 0.00 0.00 0.00 3.93
2566 4184 1.621072 CCCAGACTTCTCACCTAGCCT 60.621 57.143 0.00 0.00 0.00 4.58
2567 4185 2.358300 CCCAGACTTCTCACCTAGCCTA 60.358 54.545 0.00 0.00 0.00 3.93
2568 4186 3.366396 CCAGACTTCTCACCTAGCCTAA 58.634 50.000 0.00 0.00 0.00 2.69
2569 4187 3.769844 CCAGACTTCTCACCTAGCCTAAA 59.230 47.826 0.00 0.00 0.00 1.85
2570 4188 4.223032 CCAGACTTCTCACCTAGCCTAAAA 59.777 45.833 0.00 0.00 0.00 1.52
2571 4189 5.104735 CCAGACTTCTCACCTAGCCTAAAAT 60.105 44.000 0.00 0.00 0.00 1.82
2572 4190 6.098409 CCAGACTTCTCACCTAGCCTAAAATA 59.902 42.308 0.00 0.00 0.00 1.40
2573 4191 7.202047 CCAGACTTCTCACCTAGCCTAAAATAT 60.202 40.741 0.00 0.00 0.00 1.28
2574 4192 8.861086 CAGACTTCTCACCTAGCCTAAAATATA 58.139 37.037 0.00 0.00 0.00 0.86
2575 4193 9.435570 AGACTTCTCACCTAGCCTAAAATATAA 57.564 33.333 0.00 0.00 0.00 0.98
2580 4198 8.358148 TCTCACCTAGCCTAAAATATAAAGTCG 58.642 37.037 0.00 0.00 0.00 4.18
2581 4199 7.439381 TCACCTAGCCTAAAATATAAAGTCGG 58.561 38.462 0.00 0.00 0.00 4.79
2582 4200 7.070322 TCACCTAGCCTAAAATATAAAGTCGGT 59.930 37.037 0.00 0.00 0.00 4.69
2583 4201 7.170998 CACCTAGCCTAAAATATAAAGTCGGTG 59.829 40.741 0.00 0.00 0.00 4.94
2584 4202 6.649557 CCTAGCCTAAAATATAAAGTCGGTGG 59.350 42.308 0.00 0.00 0.00 4.61
2585 4203 4.820173 AGCCTAAAATATAAAGTCGGTGGC 59.180 41.667 0.00 0.00 36.11 5.01
2586 4204 4.023450 GCCTAAAATATAAAGTCGGTGGCC 60.023 45.833 0.00 0.00 0.00 5.36
2587 4205 4.517832 CCTAAAATATAAAGTCGGTGGCCC 59.482 45.833 0.00 0.00 0.00 5.80
2588 4206 2.651382 AATATAAAGTCGGTGGCCCC 57.349 50.000 0.00 0.00 0.00 5.80
2597 4215 4.815108 GGTGGCCCCGACCAATCC 62.815 72.222 0.00 0.00 42.70 3.01
2598 4216 4.041762 GTGGCCCCGACCAATCCA 62.042 66.667 0.00 0.00 42.70 3.41
2599 4217 4.041762 TGGCCCCGACCAATCCAC 62.042 66.667 0.00 0.00 36.55 4.02
2600 4218 4.041762 GGCCCCGACCAATCCACA 62.042 66.667 0.00 0.00 0.00 4.17
2601 4219 2.275418 GCCCCGACCAATCCACAT 59.725 61.111 0.00 0.00 0.00 3.21
2602 4220 1.529796 GCCCCGACCAATCCACATA 59.470 57.895 0.00 0.00 0.00 2.29
2603 4221 0.818040 GCCCCGACCAATCCACATAC 60.818 60.000 0.00 0.00 0.00 2.39
2604 4222 0.179029 CCCCGACCAATCCACATACC 60.179 60.000 0.00 0.00 0.00 2.73
2605 4223 0.837272 CCCGACCAATCCACATACCT 59.163 55.000 0.00 0.00 0.00 3.08
2606 4224 1.475034 CCCGACCAATCCACATACCTG 60.475 57.143 0.00 0.00 0.00 4.00
2607 4225 1.475034 CCGACCAATCCACATACCTGG 60.475 57.143 0.00 0.00 0.00 4.45
2608 4226 1.209504 CGACCAATCCACATACCTGGT 59.790 52.381 4.05 4.05 43.08 4.00
2609 4227 2.919228 GACCAATCCACATACCTGGTC 58.081 52.381 0.63 3.95 46.70 4.02
2610 4228 2.562296 ACCAATCCACATACCTGGTCT 58.438 47.619 0.63 0.00 35.44 3.85
2611 4229 3.731431 ACCAATCCACATACCTGGTCTA 58.269 45.455 0.63 0.00 35.44 2.59
2612 4230 3.711704 ACCAATCCACATACCTGGTCTAG 59.288 47.826 0.63 0.00 35.44 2.43
2622 4240 1.813513 CCTGGTCTAGGTGCACAAAG 58.186 55.000 20.43 14.84 42.00 2.77
2623 4241 1.072331 CCTGGTCTAGGTGCACAAAGT 59.928 52.381 20.43 2.19 42.00 2.66
2624 4242 2.146342 CTGGTCTAGGTGCACAAAGTG 58.854 52.381 20.43 3.78 36.51 3.16
2625 4243 1.488812 TGGTCTAGGTGCACAAAGTGT 59.511 47.619 20.43 0.00 35.75 3.55
2636 4254 0.593128 ACAAAGTGTGAGCCGAATGC 59.407 50.000 0.00 0.00 41.71 3.56
2637 4255 0.109597 CAAAGTGTGAGCCGAATGCC 60.110 55.000 0.00 0.00 42.71 4.40
2638 4256 1.244019 AAAGTGTGAGCCGAATGCCC 61.244 55.000 0.00 0.00 42.71 5.36
2639 4257 2.359850 GTGTGAGCCGAATGCCCA 60.360 61.111 0.00 0.00 42.71 5.36
2640 4258 2.046023 TGTGAGCCGAATGCCCAG 60.046 61.111 0.00 0.00 42.71 4.45
2641 4259 2.268920 GTGAGCCGAATGCCCAGA 59.731 61.111 0.00 0.00 42.71 3.86
2642 4260 2.109126 GTGAGCCGAATGCCCAGAC 61.109 63.158 0.00 0.00 42.71 3.51
2643 4261 2.293318 TGAGCCGAATGCCCAGACT 61.293 57.895 0.00 0.00 42.71 3.24
2644 4262 1.078143 GAGCCGAATGCCCAGACTT 60.078 57.895 0.00 0.00 42.71 3.01
2645 4263 1.078143 AGCCGAATGCCCAGACTTC 60.078 57.895 0.00 0.00 42.71 3.01
2646 4264 1.078143 GCCGAATGCCCAGACTTCT 60.078 57.895 0.00 0.00 0.00 2.85
2647 4265 1.092345 GCCGAATGCCCAGACTTCTC 61.092 60.000 0.00 0.00 0.00 2.87
2648 4266 0.250234 CCGAATGCCCAGACTTCTCA 59.750 55.000 0.00 0.00 0.00 3.27
2649 4267 1.363744 CGAATGCCCAGACTTCTCAC 58.636 55.000 0.00 0.00 0.00 3.51
2650 4268 1.743996 GAATGCCCAGACTTCTCACC 58.256 55.000 0.00 0.00 0.00 4.02
2651 4269 1.280421 GAATGCCCAGACTTCTCACCT 59.720 52.381 0.00 0.00 0.00 4.00
2652 4270 2.254152 ATGCCCAGACTTCTCACCTA 57.746 50.000 0.00 0.00 0.00 3.08
2653 4271 1.561643 TGCCCAGACTTCTCACCTAG 58.438 55.000 0.00 0.00 0.00 3.02
2654 4272 0.176910 GCCCAGACTTCTCACCTAGC 59.823 60.000 0.00 0.00 0.00 3.42
2655 4273 0.827368 CCCAGACTTCTCACCTAGCC 59.173 60.000 0.00 0.00 0.00 3.93
2656 4274 1.621072 CCCAGACTTCTCACCTAGCCT 60.621 57.143 0.00 0.00 0.00 4.58
2657 4275 2.358300 CCCAGACTTCTCACCTAGCCTA 60.358 54.545 0.00 0.00 0.00 3.93
2658 4276 3.366396 CCAGACTTCTCACCTAGCCTAA 58.634 50.000 0.00 0.00 0.00 2.69
2659 4277 3.131400 CCAGACTTCTCACCTAGCCTAAC 59.869 52.174 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1390 2706 9.406828 GAAACAATCTAGCCGTTTAAGAAATTT 57.593 29.630 0.00 0.00 33.18 1.82
1615 2935 9.859427 CCTTTGAGCATTTCTTGATACAAAATA 57.141 29.630 0.00 0.00 0.00 1.40
1799 3120 3.621268 CCGGAGCGAAATCACAATTTAGA 59.379 43.478 0.00 0.00 35.21 2.10
1852 3173 4.096532 GGGGCTAACAGAGTAAAATTGCTC 59.903 45.833 3.39 3.39 39.78 4.26
1853 3174 4.017126 GGGGCTAACAGAGTAAAATTGCT 58.983 43.478 0.00 0.00 0.00 3.91
1855 3176 4.764823 TGTGGGGCTAACAGAGTAAAATTG 59.235 41.667 0.00 0.00 0.00 2.32
1856 3177 4.993028 TGTGGGGCTAACAGAGTAAAATT 58.007 39.130 0.00 0.00 0.00 1.82
1857 3178 4.650972 TGTGGGGCTAACAGAGTAAAAT 57.349 40.909 0.00 0.00 0.00 1.82
1858 3179 4.394729 CTTGTGGGGCTAACAGAGTAAAA 58.605 43.478 0.00 0.00 0.00 1.52
1859 3180 3.244770 CCTTGTGGGGCTAACAGAGTAAA 60.245 47.826 0.00 0.00 0.00 2.01
1860 3181 2.304761 CCTTGTGGGGCTAACAGAGTAA 59.695 50.000 0.00 0.00 0.00 2.24
1861 3182 1.906574 CCTTGTGGGGCTAACAGAGTA 59.093 52.381 0.00 0.00 0.00 2.59
1864 3185 1.145571 AACCTTGTGGGGCTAACAGA 58.854 50.000 0.00 0.00 40.03 3.41
1865 3186 2.871096 TAACCTTGTGGGGCTAACAG 57.129 50.000 0.00 0.00 40.03 3.16
1866 3187 3.492337 CTTTAACCTTGTGGGGCTAACA 58.508 45.455 0.00 0.00 40.03 2.41
1867 3188 2.823747 CCTTTAACCTTGTGGGGCTAAC 59.176 50.000 0.00 0.00 40.03 2.34
1868 3189 2.447811 ACCTTTAACCTTGTGGGGCTAA 59.552 45.455 0.00 0.00 40.03 3.09
1869 3190 2.067386 ACCTTTAACCTTGTGGGGCTA 58.933 47.619 0.00 0.00 40.03 3.93
1870 3191 0.857675 ACCTTTAACCTTGTGGGGCT 59.142 50.000 0.00 0.00 40.03 5.19
1871 3192 2.165167 GTACCTTTAACCTTGTGGGGC 58.835 52.381 0.00 0.00 40.03 5.80
1872 3193 3.801307 AGTACCTTTAACCTTGTGGGG 57.199 47.619 0.00 0.00 40.03 4.96
1873 3194 4.721132 TGAAGTACCTTTAACCTTGTGGG 58.279 43.478 0.00 0.00 41.89 4.61
1874 3195 5.374071 ACTGAAGTACCTTTAACCTTGTGG 58.626 41.667 0.00 0.00 39.83 4.17
1875 3196 6.937436 AACTGAAGTACCTTTAACCTTGTG 57.063 37.500 0.00 0.00 0.00 3.33
1876 3197 8.270030 AGTTAACTGAAGTACCTTTAACCTTGT 58.730 33.333 7.48 0.00 34.54 3.16
1877 3198 8.557029 CAGTTAACTGAAGTACCTTTAACCTTG 58.443 37.037 28.17 0.00 46.59 3.61
1878 3199 7.718314 CCAGTTAACTGAAGTACCTTTAACCTT 59.282 37.037 32.50 0.00 46.59 3.50
1879 3200 7.147426 ACCAGTTAACTGAAGTACCTTTAACCT 60.147 37.037 32.50 0.00 46.59 3.50
1883 3204 8.482852 ACTACCAGTTAACTGAAGTACCTTTA 57.517 34.615 32.50 9.25 46.59 1.85
1884 3205 7.370905 ACTACCAGTTAACTGAAGTACCTTT 57.629 36.000 32.50 12.10 46.59 3.11
1885 3206 6.990908 ACTACCAGTTAACTGAAGTACCTT 57.009 37.500 32.50 12.69 46.59 3.50
1886 3207 6.990908 AACTACCAGTTAACTGAAGTACCT 57.009 37.500 32.50 18.05 46.59 3.08
1888 3209 7.707893 TGACAAACTACCAGTTAACTGAAGTAC 59.292 37.037 32.50 22.77 46.59 2.73
1889 3210 7.784037 TGACAAACTACCAGTTAACTGAAGTA 58.216 34.615 32.50 24.31 46.59 2.24
1890 3211 6.646267 TGACAAACTACCAGTTAACTGAAGT 58.354 36.000 32.50 28.54 46.59 3.01
1891 3212 6.761714 ACTGACAAACTACCAGTTAACTGAAG 59.238 38.462 32.50 28.00 46.59 3.02
1892 3213 6.646267 ACTGACAAACTACCAGTTAACTGAA 58.354 36.000 32.50 20.13 46.59 3.02
1893 3214 6.229936 ACTGACAAACTACCAGTTAACTGA 57.770 37.500 32.50 15.65 46.59 3.41
1895 3216 6.988580 GGTTACTGACAAACTACCAGTTAACT 59.011 38.462 1.12 1.12 37.47 2.24
1896 3217 6.074142 CGGTTACTGACAAACTACCAGTTAAC 60.074 42.308 0.00 0.00 37.47 2.01
1898 3219 5.068987 ACGGTTACTGACAAACTACCAGTTA 59.931 40.000 0.00 0.00 37.47 2.24
1899 3220 4.141869 ACGGTTACTGACAAACTACCAGTT 60.142 41.667 0.00 0.00 40.80 3.16
1900 3221 3.385755 ACGGTTACTGACAAACTACCAGT 59.614 43.478 0.00 0.00 42.94 4.00
1901 3222 3.739300 CACGGTTACTGACAAACTACCAG 59.261 47.826 0.00 0.00 0.00 4.00
1902 3223 3.719924 CACGGTTACTGACAAACTACCA 58.280 45.455 0.00 0.00 0.00 3.25
1903 3224 2.477754 GCACGGTTACTGACAAACTACC 59.522 50.000 0.00 0.00 0.00 3.18
1905 3226 2.366266 AGGCACGGTTACTGACAAACTA 59.634 45.455 0.00 0.00 0.00 2.24
1906 3227 1.140252 AGGCACGGTTACTGACAAACT 59.860 47.619 0.00 0.00 0.00 2.66
1908 3229 2.335316 AAGGCACGGTTACTGACAAA 57.665 45.000 0.00 0.00 0.00 2.83
1910 3231 2.563620 TGATAAGGCACGGTTACTGACA 59.436 45.455 0.00 0.00 0.00 3.58
1911 3232 3.187700 CTGATAAGGCACGGTTACTGAC 58.812 50.000 0.00 0.00 0.00 3.51
1951 3569 4.345859 AAACTAACACGTGGAGATTCCA 57.654 40.909 21.57 0.00 45.98 3.53
1952 3570 6.647895 TCTTAAAACTAACACGTGGAGATTCC 59.352 38.462 21.57 0.00 36.96 3.01
1964 3582 5.867330 TCCGTGGGATTCTTAAAACTAACA 58.133 37.500 0.00 0.00 0.00 2.41
1966 3584 6.363167 TCTCCGTGGGATTCTTAAAACTAA 57.637 37.500 0.00 0.00 0.00 2.24
1976 3594 3.760580 ATTGAGATCTCCGTGGGATTC 57.239 47.619 20.03 0.00 0.00 2.52
1982 3600 7.776107 ACACCATATATATTGAGATCTCCGTG 58.224 38.462 20.03 11.42 0.00 4.94
2027 3645 6.767902 ACAGGATTAAACAAGCATGTATCGAT 59.232 34.615 2.16 2.16 39.40 3.59
2063 3681 7.073097 AACAAGGGTGTTAAGCACGGAAAAA 62.073 40.000 0.00 0.00 46.33 1.94
2064 3682 5.648446 AACAAGGGTGTTAAGCACGGAAAA 61.648 41.667 0.00 0.00 46.33 2.29
2065 3683 4.187176 AACAAGGGTGTTAAGCACGGAAA 61.187 43.478 0.00 0.00 46.33 3.13
2068 3686 1.001815 CAACAAGGGTGTTAAGCACGG 60.002 52.381 0.00 0.00 46.47 4.94
2086 3704 0.541764 GCACCATCCCAAGTTCCCAA 60.542 55.000 0.00 0.00 0.00 4.12
2092 3710 0.251341 GACAAGGCACCATCCCAAGT 60.251 55.000 0.00 0.00 0.00 3.16
2093 3711 0.967380 GGACAAGGCACCATCCCAAG 60.967 60.000 0.00 0.00 0.00 3.61
2094 3712 1.076549 GGACAAGGCACCATCCCAA 59.923 57.895 0.00 0.00 0.00 4.12
2095 3713 2.763215 GGACAAGGCACCATCCCA 59.237 61.111 0.00 0.00 0.00 4.37
2096 3714 2.270874 ATCGGACAAGGCACCATCCC 62.271 60.000 0.00 0.00 0.00 3.85
2097 3715 1.097547 CATCGGACAAGGCACCATCC 61.098 60.000 0.00 0.00 0.00 3.51
2098 3716 0.107703 TCATCGGACAAGGCACCATC 60.108 55.000 0.00 0.00 0.00 3.51
2099 3717 0.548031 ATCATCGGACAAGGCACCAT 59.452 50.000 0.00 0.00 0.00 3.55
2121 3739 6.122277 TGCCCCACAAACATTCAAAAATTTA 58.878 32.000 0.00 0.00 0.00 1.40
2123 3741 4.530875 TGCCCCACAAACATTCAAAAATT 58.469 34.783 0.00 0.00 0.00 1.82
2124 3742 4.162040 TGCCCCACAAACATTCAAAAAT 57.838 36.364 0.00 0.00 0.00 1.82
2128 3746 1.139853 GGTTGCCCCACAAACATTCAA 59.860 47.619 0.00 0.00 45.90 2.69
2192 3810 9.640974 GATTCAGACAATCAACAAAACAAATTG 57.359 29.630 0.00 0.00 36.37 2.32
2245 3863 7.383572 CCGGATACAGAACTAGAATCAAGATTG 59.616 40.741 0.00 0.00 0.00 2.67
2247 3865 6.551601 ACCGGATACAGAACTAGAATCAAGAT 59.448 38.462 9.46 0.00 0.00 2.40
2260 3878 1.843368 AGGACGAACCGGATACAGAA 58.157 50.000 9.46 0.00 44.74 3.02
2341 3959 7.870509 TGACAAGAATATTGAATCTTCCTGG 57.129 36.000 6.78 0.00 33.73 4.45
2367 3985 6.377912 TGGGGTCATCCTCTTTTTCTAAAAA 58.622 36.000 1.05 1.05 34.72 1.94
2368 3986 5.959512 TGGGGTCATCCTCTTTTTCTAAAA 58.040 37.500 0.00 0.00 34.72 1.52
2369 3987 5.570320 CTGGGGTCATCCTCTTTTTCTAAA 58.430 41.667 0.00 0.00 34.72 1.85
2370 3988 4.567747 GCTGGGGTCATCCTCTTTTTCTAA 60.568 45.833 0.00 0.00 34.72 2.10
2371 3989 3.054361 GCTGGGGTCATCCTCTTTTTCTA 60.054 47.826 0.00 0.00 34.72 2.10
2372 3990 2.291217 GCTGGGGTCATCCTCTTTTTCT 60.291 50.000 0.00 0.00 34.72 2.52
2373 3991 2.095461 GCTGGGGTCATCCTCTTTTTC 58.905 52.381 0.00 0.00 34.72 2.29
2374 3992 1.272704 GGCTGGGGTCATCCTCTTTTT 60.273 52.381 0.00 0.00 34.72 1.94
2375 3993 0.332972 GGCTGGGGTCATCCTCTTTT 59.667 55.000 0.00 0.00 34.72 2.27
2376 3994 0.551131 AGGCTGGGGTCATCCTCTTT 60.551 55.000 0.00 0.00 34.68 2.52
2377 3995 1.083706 AGGCTGGGGTCATCCTCTT 59.916 57.895 0.00 0.00 34.68 2.85
2378 3996 2.790766 AGGCTGGGGTCATCCTCT 59.209 61.111 0.00 0.00 34.68 3.69
2379 3997 3.235369 GAGGCTGGGGTCATCCTC 58.765 66.667 0.00 1.28 45.46 3.71
2380 3998 1.692042 CAGAGGCTGGGGTCATCCT 60.692 63.158 0.00 0.00 41.77 3.24
2381 3999 2.914289 CAGAGGCTGGGGTCATCC 59.086 66.667 0.00 0.00 0.00 3.51
2382 4000 1.992519 ATGCAGAGGCTGGGGTCATC 61.993 60.000 0.00 0.00 41.91 2.92
2383 4001 1.992519 GATGCAGAGGCTGGGGTCAT 61.993 60.000 0.00 0.00 41.91 3.06
2384 4002 2.611800 ATGCAGAGGCTGGGGTCA 60.612 61.111 0.00 0.00 41.91 4.02
2385 4003 2.191641 GATGCAGAGGCTGGGGTC 59.808 66.667 0.00 0.00 41.91 4.46
2386 4004 2.285969 AGATGCAGAGGCTGGGGT 60.286 61.111 0.00 0.00 41.91 4.95
2387 4005 2.509916 GAGATGCAGAGGCTGGGG 59.490 66.667 0.00 0.00 41.91 4.96
2388 4006 2.108566 CGAGATGCAGAGGCTGGG 59.891 66.667 0.00 0.00 41.91 4.45
2389 4007 2.108566 CCGAGATGCAGAGGCTGG 59.891 66.667 0.00 0.00 41.91 4.85
2390 4008 2.588314 GCCGAGATGCAGAGGCTG 60.588 66.667 14.69 0.00 45.67 4.85
2391 4009 4.218578 CGCCGAGATGCAGAGGCT 62.219 66.667 18.12 0.00 46.85 4.58
2392 4010 3.512223 ATCGCCGAGATGCAGAGGC 62.512 63.158 12.67 12.67 45.67 4.70
2393 4011 2.733301 ATCGCCGAGATGCAGAGG 59.267 61.111 0.00 0.00 38.36 3.69
2400 4018 1.524393 TTGCATGCATCGCCGAGAT 60.524 52.632 23.37 0.00 41.01 2.75
2401 4019 2.125188 TTGCATGCATCGCCGAGA 60.125 55.556 23.37 0.00 0.00 4.04
2402 4020 2.023741 GTTGCATGCATCGCCGAG 59.976 61.111 23.37 0.00 0.00 4.63
2403 4021 3.507924 GGTTGCATGCATCGCCGA 61.508 61.111 23.37 1.46 0.00 5.54
2404 4022 2.616786 AATGGTTGCATGCATCGCCG 62.617 55.000 23.37 0.00 0.00 6.46
2405 4023 0.460635 AAATGGTTGCATGCATCGCC 60.461 50.000 23.37 22.57 0.00 5.54
2406 4024 1.361793 AAAATGGTTGCATGCATCGC 58.638 45.000 23.37 14.45 0.00 4.58
2407 4025 6.825284 TTAATAAAATGGTTGCATGCATCG 57.175 33.333 23.37 0.00 0.00 3.84
2434 4052 9.616156 TGTATAACTTTGTAAGGTCTTTGTGAA 57.384 29.630 0.00 0.00 0.00 3.18
2435 4053 9.787435 ATGTATAACTTTGTAAGGTCTTTGTGA 57.213 29.630 0.00 0.00 0.00 3.58
2437 4055 9.787435 TGATGTATAACTTTGTAAGGTCTTTGT 57.213 29.630 0.00 0.00 0.00 2.83
2443 4061 9.880157 ACGTATTGATGTATAACTTTGTAAGGT 57.120 29.630 0.00 0.00 0.00 3.50
2448 4066 9.084164 GTCTGACGTATTGATGTATAACTTTGT 57.916 33.333 0.00 0.00 0.00 2.83
2449 4067 8.259872 CGTCTGACGTATTGATGTATAACTTTG 58.740 37.037 21.30 0.00 36.74 2.77
2450 4068 7.043590 GCGTCTGACGTATTGATGTATAACTTT 60.044 37.037 28.38 0.00 44.73 2.66
2451 4069 6.417044 GCGTCTGACGTATTGATGTATAACTT 59.583 38.462 28.38 0.00 44.73 2.66
2452 4070 5.913514 GCGTCTGACGTATTGATGTATAACT 59.086 40.000 28.38 0.00 44.73 2.24
2453 4071 5.116680 GGCGTCTGACGTATTGATGTATAAC 59.883 44.000 28.38 8.75 44.73 1.89
2454 4072 5.217393 GGCGTCTGACGTATTGATGTATAA 58.783 41.667 28.38 0.00 44.73 0.98
2455 4073 4.276431 TGGCGTCTGACGTATTGATGTATA 59.724 41.667 28.38 2.40 44.73 1.47
2456 4074 3.067601 TGGCGTCTGACGTATTGATGTAT 59.932 43.478 28.38 0.00 44.73 2.29
2457 4075 2.424246 TGGCGTCTGACGTATTGATGTA 59.576 45.455 28.38 5.07 44.73 2.29
2458 4076 1.203758 TGGCGTCTGACGTATTGATGT 59.796 47.619 28.38 0.00 44.73 3.06
2459 4077 1.854743 CTGGCGTCTGACGTATTGATG 59.145 52.381 28.38 10.49 44.73 3.07
2460 4078 1.802880 GCTGGCGTCTGACGTATTGAT 60.803 52.381 28.38 0.00 44.73 2.57
2461 4079 0.457853 GCTGGCGTCTGACGTATTGA 60.458 55.000 28.38 9.61 44.73 2.57
2462 4080 0.735978 TGCTGGCGTCTGACGTATTG 60.736 55.000 28.38 17.61 44.73 1.90
2463 4081 0.175760 ATGCTGGCGTCTGACGTATT 59.824 50.000 28.38 7.96 44.73 1.89
2464 4082 0.249073 GATGCTGGCGTCTGACGTAT 60.249 55.000 28.38 15.97 44.73 3.06
2465 4083 1.138883 GATGCTGGCGTCTGACGTA 59.861 57.895 28.38 17.86 44.73 3.57
2466 4084 2.125912 GATGCTGGCGTCTGACGT 60.126 61.111 28.38 10.07 44.73 4.34
2467 4085 1.446792 AAGATGCTGGCGTCTGACG 60.447 57.895 24.78 24.78 45.88 4.35
2468 4086 0.390340 TCAAGATGCTGGCGTCTGAC 60.390 55.000 16.64 0.00 41.02 3.51
2469 4087 0.390340 GTCAAGATGCTGGCGTCTGA 60.390 55.000 16.64 13.07 41.02 3.27
2470 4088 0.671472 TGTCAAGATGCTGGCGTCTG 60.671 55.000 16.64 11.34 41.02 3.51
2471 4089 0.035317 TTGTCAAGATGCTGGCGTCT 59.965 50.000 11.07 11.07 43.46 4.18
2472 4090 0.166814 GTTGTCAAGATGCTGGCGTC 59.833 55.000 6.68 6.68 0.00 5.19
2473 4091 0.534877 TGTTGTCAAGATGCTGGCGT 60.535 50.000 0.00 0.00 0.00 5.68
2474 4092 0.806868 ATGTTGTCAAGATGCTGGCG 59.193 50.000 0.00 0.00 0.00 5.69
2475 4093 2.089980 AGATGTTGTCAAGATGCTGGC 58.910 47.619 0.00 0.00 0.00 4.85
2476 4094 3.079578 ACAGATGTTGTCAAGATGCTGG 58.920 45.455 17.99 3.95 33.87 4.85
2487 4105 2.171840 AGGAGTAGCGACAGATGTTGT 58.828 47.619 0.00 0.00 44.55 3.32
2488 4106 2.949451 AGGAGTAGCGACAGATGTTG 57.051 50.000 0.00 0.00 0.00 3.33
2489 4107 3.570550 GGATAGGAGTAGCGACAGATGTT 59.429 47.826 0.00 0.00 0.00 2.71
2490 4108 3.150767 GGATAGGAGTAGCGACAGATGT 58.849 50.000 0.00 0.00 0.00 3.06
2491 4109 3.149981 TGGATAGGAGTAGCGACAGATG 58.850 50.000 0.00 0.00 0.00 2.90
2492 4110 3.510531 TGGATAGGAGTAGCGACAGAT 57.489 47.619 0.00 0.00 0.00 2.90
2493 4111 3.510531 ATGGATAGGAGTAGCGACAGA 57.489 47.619 0.00 0.00 0.00 3.41
2494 4112 3.570125 TCAATGGATAGGAGTAGCGACAG 59.430 47.826 0.00 0.00 0.00 3.51
2495 4113 3.562182 TCAATGGATAGGAGTAGCGACA 58.438 45.455 0.00 0.00 0.00 4.35
2496 4114 4.218635 TCATCAATGGATAGGAGTAGCGAC 59.781 45.833 0.00 0.00 30.87 5.19
2497 4115 4.407365 TCATCAATGGATAGGAGTAGCGA 58.593 43.478 0.00 0.00 30.87 4.93
2498 4116 4.790765 TCATCAATGGATAGGAGTAGCG 57.209 45.455 0.00 0.00 30.87 4.26
2499 4117 5.486526 CCTTCATCAATGGATAGGAGTAGC 58.513 45.833 0.00 0.00 30.87 3.58
2500 4118 5.545723 ACCCTTCATCAATGGATAGGAGTAG 59.454 44.000 0.86 0.00 30.87 2.57
2501 4119 5.307976 CACCCTTCATCAATGGATAGGAGTA 59.692 44.000 0.86 0.00 30.87 2.59
2502 4120 4.103785 CACCCTTCATCAATGGATAGGAGT 59.896 45.833 0.86 0.00 30.87 3.85
2503 4121 4.649692 CACCCTTCATCAATGGATAGGAG 58.350 47.826 0.86 0.00 30.87 3.69
2504 4122 3.181440 GCACCCTTCATCAATGGATAGGA 60.181 47.826 0.86 0.00 30.87 2.94
2505 4123 3.152341 GCACCCTTCATCAATGGATAGG 58.848 50.000 0.00 0.00 30.87 2.57
2506 4124 3.819337 CTGCACCCTTCATCAATGGATAG 59.181 47.826 0.00 0.00 30.87 2.08
2507 4125 3.459227 TCTGCACCCTTCATCAATGGATA 59.541 43.478 0.00 0.00 30.87 2.59
2508 4126 2.242965 TCTGCACCCTTCATCAATGGAT 59.757 45.455 0.00 0.00 0.00 3.41
2509 4127 1.634973 TCTGCACCCTTCATCAATGGA 59.365 47.619 0.00 0.00 0.00 3.41
2510 4128 2.133281 TCTGCACCCTTCATCAATGG 57.867 50.000 0.00 0.00 0.00 3.16
2511 4129 3.508793 ACTTTCTGCACCCTTCATCAATG 59.491 43.478 0.00 0.00 0.00 2.82
2512 4130 3.508793 CACTTTCTGCACCCTTCATCAAT 59.491 43.478 0.00 0.00 0.00 2.57
2513 4131 2.886523 CACTTTCTGCACCCTTCATCAA 59.113 45.455 0.00 0.00 0.00 2.57
2514 4132 2.158623 ACACTTTCTGCACCCTTCATCA 60.159 45.455 0.00 0.00 0.00 3.07
2515 4133 2.227388 CACACTTTCTGCACCCTTCATC 59.773 50.000 0.00 0.00 0.00 2.92
2516 4134 2.158623 TCACACTTTCTGCACCCTTCAT 60.159 45.455 0.00 0.00 0.00 2.57
2517 4135 1.211703 TCACACTTTCTGCACCCTTCA 59.788 47.619 0.00 0.00 0.00 3.02
2518 4136 1.876156 CTCACACTTTCTGCACCCTTC 59.124 52.381 0.00 0.00 0.00 3.46
2519 4137 1.972872 CTCACACTTTCTGCACCCTT 58.027 50.000 0.00 0.00 0.00 3.95
2520 4138 0.536006 GCTCACACTTTCTGCACCCT 60.536 55.000 0.00 0.00 0.00 4.34
2521 4139 1.518903 GGCTCACACTTTCTGCACCC 61.519 60.000 0.00 0.00 0.00 4.61
2522 4140 1.845809 CGGCTCACACTTTCTGCACC 61.846 60.000 0.00 0.00 0.00 5.01
2523 4141 0.880278 TCGGCTCACACTTTCTGCAC 60.880 55.000 0.00 0.00 0.00 4.57
2524 4142 0.179059 TTCGGCTCACACTTTCTGCA 60.179 50.000 0.00 0.00 0.00 4.41
2525 4143 1.160137 ATTCGGCTCACACTTTCTGC 58.840 50.000 0.00 0.00 0.00 4.26
2526 4144 2.673368 GGTATTCGGCTCACACTTTCTG 59.327 50.000 0.00 0.00 0.00 3.02
2527 4145 2.354805 GGGTATTCGGCTCACACTTTCT 60.355 50.000 0.00 0.00 0.00 2.52
2528 4146 2.007608 GGGTATTCGGCTCACACTTTC 58.992 52.381 0.00 0.00 0.00 2.62
2529 4147 1.349688 TGGGTATTCGGCTCACACTTT 59.650 47.619 0.00 0.00 0.00 2.66
2530 4148 0.981183 TGGGTATTCGGCTCACACTT 59.019 50.000 0.00 0.00 0.00 3.16
2531 4149 0.537188 CTGGGTATTCGGCTCACACT 59.463 55.000 0.00 0.00 0.00 3.55
2532 4150 0.535335 TCTGGGTATTCGGCTCACAC 59.465 55.000 0.00 0.00 0.00 3.82
2533 4151 0.535335 GTCTGGGTATTCGGCTCACA 59.465 55.000 0.00 0.00 0.00 3.58
2534 4152 0.824759 AGTCTGGGTATTCGGCTCAC 59.175 55.000 0.00 0.00 0.00 3.51
2535 4153 1.480954 GAAGTCTGGGTATTCGGCTCA 59.519 52.381 0.00 0.00 0.00 4.26
2536 4154 1.757699 AGAAGTCTGGGTATTCGGCTC 59.242 52.381 0.00 0.00 0.00 4.70
2537 4155 1.757699 GAGAAGTCTGGGTATTCGGCT 59.242 52.381 0.00 0.00 0.00 5.52
2538 4156 1.480954 TGAGAAGTCTGGGTATTCGGC 59.519 52.381 0.00 0.00 0.00 5.54
2539 4157 2.159085 GGTGAGAAGTCTGGGTATTCGG 60.159 54.545 0.00 0.00 0.00 4.30
2540 4158 2.761208 AGGTGAGAAGTCTGGGTATTCG 59.239 50.000 0.00 0.00 0.00 3.34
2541 4159 4.202172 GCTAGGTGAGAAGTCTGGGTATTC 60.202 50.000 0.00 0.00 0.00 1.75
2542 4160 3.707102 GCTAGGTGAGAAGTCTGGGTATT 59.293 47.826 0.00 0.00 0.00 1.89
2543 4161 3.301274 GCTAGGTGAGAAGTCTGGGTAT 58.699 50.000 0.00 0.00 0.00 2.73
2544 4162 2.623502 GGCTAGGTGAGAAGTCTGGGTA 60.624 54.545 0.00 0.00 0.00 3.69
2545 4163 1.562783 GCTAGGTGAGAAGTCTGGGT 58.437 55.000 0.00 0.00 0.00 4.51
2546 4164 0.827368 GGCTAGGTGAGAAGTCTGGG 59.173 60.000 0.00 0.00 0.00 4.45
2547 4165 1.859302 AGGCTAGGTGAGAAGTCTGG 58.141 55.000 0.00 0.00 0.00 3.86
2548 4166 5.407407 TTTTAGGCTAGGTGAGAAGTCTG 57.593 43.478 0.00 0.00 0.00 3.51
2549 4167 7.922699 ATATTTTAGGCTAGGTGAGAAGTCT 57.077 36.000 0.00 0.00 0.00 3.24
2554 4172 8.358148 CGACTTTATATTTTAGGCTAGGTGAGA 58.642 37.037 0.00 0.00 0.00 3.27
2555 4173 7.599245 CCGACTTTATATTTTAGGCTAGGTGAG 59.401 40.741 0.00 0.00 0.00 3.51
2556 4174 7.070322 ACCGACTTTATATTTTAGGCTAGGTGA 59.930 37.037 0.00 0.00 0.00 4.02
2557 4175 7.170998 CACCGACTTTATATTTTAGGCTAGGTG 59.829 40.741 6.41 6.41 36.40 4.00
2558 4176 7.215085 CACCGACTTTATATTTTAGGCTAGGT 58.785 38.462 0.00 0.00 0.00 3.08
2559 4177 6.649557 CCACCGACTTTATATTTTAGGCTAGG 59.350 42.308 0.00 0.00 0.00 3.02
2560 4178 6.147328 GCCACCGACTTTATATTTTAGGCTAG 59.853 42.308 0.00 0.00 34.59 3.42
2561 4179 5.993441 GCCACCGACTTTATATTTTAGGCTA 59.007 40.000 0.00 0.00 34.59 3.93
2562 4180 4.820173 GCCACCGACTTTATATTTTAGGCT 59.180 41.667 0.00 0.00 34.59 4.58
2563 4181 4.023450 GGCCACCGACTTTATATTTTAGGC 60.023 45.833 0.00 0.00 36.57 3.93
2564 4182 4.517832 GGGCCACCGACTTTATATTTTAGG 59.482 45.833 4.39 0.00 0.00 2.69
2565 4183 4.517832 GGGGCCACCGACTTTATATTTTAG 59.482 45.833 4.39 0.00 37.78 1.85
2566 4184 4.463070 GGGGCCACCGACTTTATATTTTA 58.537 43.478 4.39 0.00 37.78 1.52
2567 4185 3.293337 GGGGCCACCGACTTTATATTTT 58.707 45.455 4.39 0.00 37.78 1.82
2568 4186 2.940158 GGGGCCACCGACTTTATATTT 58.060 47.619 4.39 0.00 37.78 1.40
2569 4187 2.651382 GGGGCCACCGACTTTATATT 57.349 50.000 4.39 0.00 37.78 1.28
2580 4198 4.815108 GGATTGGTCGGGGCCACC 62.815 72.222 4.39 5.88 38.42 4.61
2581 4199 4.041762 TGGATTGGTCGGGGCCAC 62.042 66.667 4.39 0.00 38.42 5.01
2582 4200 4.041762 GTGGATTGGTCGGGGCCA 62.042 66.667 4.39 0.00 36.62 5.36
2583 4201 1.990160 TATGTGGATTGGTCGGGGCC 61.990 60.000 0.00 0.00 0.00 5.80
2584 4202 0.818040 GTATGTGGATTGGTCGGGGC 60.818 60.000 0.00 0.00 0.00 5.80
2585 4203 0.179029 GGTATGTGGATTGGTCGGGG 60.179 60.000 0.00 0.00 0.00 5.73
2586 4204 0.837272 AGGTATGTGGATTGGTCGGG 59.163 55.000 0.00 0.00 0.00 5.14
2587 4205 1.475034 CCAGGTATGTGGATTGGTCGG 60.475 57.143 0.00 0.00 40.44 4.79
2588 4206 1.209504 ACCAGGTATGTGGATTGGTCG 59.790 52.381 0.00 0.00 40.44 4.79
2590 4208 2.562296 AGACCAGGTATGTGGATTGGT 58.438 47.619 0.00 0.00 44.42 3.67
2591 4209 3.071602 CCTAGACCAGGTATGTGGATTGG 59.928 52.174 0.00 0.00 40.44 3.16
2592 4210 4.342862 CCTAGACCAGGTATGTGGATTG 57.657 50.000 0.00 0.00 40.44 2.67
2603 4221 5.629661 ACACTTTGTGCACCTAGACCAGG 62.630 52.174 15.69 4.76 43.16 4.45
2604 4222 2.146342 CACTTTGTGCACCTAGACCAG 58.854 52.381 15.69 2.18 0.00 4.00
2605 4223 1.488812 ACACTTTGTGCACCTAGACCA 59.511 47.619 15.69 0.00 36.98 4.02
2606 4224 1.873591 CACACTTTGTGCACCTAGACC 59.126 52.381 15.69 0.00 41.89 3.85
2616 4234 4.823100 GGCATTCGGCTCACACTTTGTG 62.823 54.545 0.00 0.00 43.94 3.33
2617 4235 0.593128 GCATTCGGCTCACACTTTGT 59.407 50.000 0.00 0.00 40.25 2.83
2618 4236 0.109597 GGCATTCGGCTCACACTTTG 60.110 55.000 0.00 0.00 44.01 2.77
2619 4237 1.244019 GGGCATTCGGCTCACACTTT 61.244 55.000 0.00 0.00 44.81 2.66
2620 4238 1.675641 GGGCATTCGGCTCACACTT 60.676 57.895 0.00 0.00 44.81 3.16
2621 4239 2.045926 GGGCATTCGGCTCACACT 60.046 61.111 0.00 0.00 44.81 3.55
2626 4244 1.078143 AAGTCTGGGCATTCGGCTC 60.078 57.895 0.00 0.00 46.04 4.70
2627 4245 1.078143 GAAGTCTGGGCATTCGGCT 60.078 57.895 0.00 0.00 44.01 5.52
2628 4246 1.078143 AGAAGTCTGGGCATTCGGC 60.078 57.895 0.00 0.00 43.74 5.54
2629 4247 0.250234 TGAGAAGTCTGGGCATTCGG 59.750 55.000 0.00 0.00 0.00 4.30
2630 4248 1.363744 GTGAGAAGTCTGGGCATTCG 58.636 55.000 0.00 0.00 0.00 3.34
2631 4249 1.280421 AGGTGAGAAGTCTGGGCATTC 59.720 52.381 0.00 0.00 0.00 2.67
2632 4250 1.366319 AGGTGAGAAGTCTGGGCATT 58.634 50.000 0.00 0.00 0.00 3.56
2633 4251 2.114616 CTAGGTGAGAAGTCTGGGCAT 58.885 52.381 0.00 0.00 0.00 4.40
2634 4252 1.561643 CTAGGTGAGAAGTCTGGGCA 58.438 55.000 0.00 0.00 0.00 5.36
2635 4253 0.176910 GCTAGGTGAGAAGTCTGGGC 59.823 60.000 0.00 0.00 0.00 5.36
2636 4254 0.827368 GGCTAGGTGAGAAGTCTGGG 59.173 60.000 0.00 0.00 0.00 4.45
2637 4255 1.859302 AGGCTAGGTGAGAAGTCTGG 58.141 55.000 0.00 0.00 0.00 3.86
2638 4256 4.379339 GTTAGGCTAGGTGAGAAGTCTG 57.621 50.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.