Multiple sequence alignment - TraesCS5A01G351900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G351900 chr5A 100.000 5987 0 0 1 5987 554219527 554213541 0.000000e+00 11057.0
1 TraesCS5A01G351900 chr5A 90.178 3533 277 40 2478 5987 100521473 100524958 0.000000e+00 4538.0
2 TraesCS5A01G351900 chr5A 100.000 2035 0 0 6459 8493 554213069 554211035 0.000000e+00 3759.0
3 TraesCS5A01G351900 chr5A 88.355 1812 172 24 4187 5987 100513640 100515423 0.000000e+00 2141.0
4 TraesCS5A01G351900 chr5A 95.084 1363 51 10 674 2032 554236331 554234981 0.000000e+00 2132.0
5 TraesCS5A01G351900 chr5A 82.736 1367 193 34 696 2036 554201452 554200103 0.000000e+00 1177.0
6 TraesCS5A01G351900 chr5A 83.905 1224 160 24 819 2032 554182809 554181613 0.000000e+00 1134.0
7 TraesCS5A01G351900 chr5A 92.232 708 47 8 6507 7210 637494625 637493922 0.000000e+00 996.0
8 TraesCS5A01G351900 chr5A 88.064 687 51 19 1 680 554237026 554236364 0.000000e+00 785.0
9 TraesCS5A01G351900 chr5A 87.818 550 50 7 7210 7743 554234986 554234438 5.600000e-176 628.0
10 TraesCS5A01G351900 chr5A 80.392 510 79 18 7210 7709 554181618 554181120 1.350000e-97 368.0
11 TraesCS5A01G351900 chr5A 82.840 169 29 0 190 358 554202156 554201988 1.480000e-32 152.0
12 TraesCS5A01G351900 chr5A 90.566 53 3 2 5780 5832 600632572 600632522 1.530000e-07 69.4
13 TraesCS5A01G351900 chr5A 88.679 53 4 2 5780 5832 600625725 600625675 7.120000e-06 63.9
14 TraesCS5A01G351900 chr1A 92.922 3617 233 17 2036 5642 174740239 174736636 0.000000e+00 5240.0
15 TraesCS5A01G351900 chr1A 92.646 3617 244 17 2036 5642 174698121 174694517 0.000000e+00 5186.0
16 TraesCS5A01G351900 chr1A 94.123 3216 174 14 2478 5685 86667059 86670267 0.000000e+00 4878.0
17 TraesCS5A01G351900 chr1A 85.732 1577 155 48 2033 3567 309409000 309410548 0.000000e+00 1602.0
18 TraesCS5A01G351900 chr1A 94.940 751 37 1 6461 7210 439647327 439648077 0.000000e+00 1175.0
19 TraesCS5A01G351900 chr1A 92.939 694 40 8 6521 7210 574983878 574984566 0.000000e+00 1002.0
20 TraesCS5A01G351900 chr1A 72.247 454 83 29 8018 8461 331521042 331521462 5.420000e-17 100.0
21 TraesCS5A01G351900 chr2A 94.372 3216 167 13 2478 5685 321873337 321876546 0.000000e+00 4924.0
22 TraesCS5A01G351900 chr2A 89.895 3533 301 40 2478 5987 115648634 115645135 0.000000e+00 4495.0
23 TraesCS5A01G351900 chr2A 85.660 3703 421 78 2030 5686 364715974 364719612 0.000000e+00 3795.0
24 TraesCS5A01G351900 chr2A 91.111 2430 196 13 3571 5987 572729488 572731910 0.000000e+00 3273.0
25 TraesCS5A01G351900 chr2A 83.208 3603 467 106 2036 5564 541313229 541309691 0.000000e+00 3175.0
26 TraesCS5A01G351900 chr2A 91.435 2265 173 15 3571 5825 658437905 658435652 0.000000e+00 3088.0
27 TraesCS5A01G351900 chr2A 84.294 2152 222 71 2036 4114 156883568 156881460 0.000000e+00 1995.0
28 TraesCS5A01G351900 chr2A 92.653 735 49 4 6478 7210 658435292 658434561 0.000000e+00 1053.0
29 TraesCS5A01G351900 chr2A 91.788 755 55 5 6459 7210 271037615 271038365 0.000000e+00 1044.0
30 TraesCS5A01G351900 chr2A 91.678 757 52 7 6459 7210 150994919 150995669 0.000000e+00 1038.0
31 TraesCS5A01G351900 chr2A 89.112 845 73 15 2036 2871 371360983 371360149 0.000000e+00 1033.0
32 TraesCS5A01G351900 chr2A 91.534 756 52 9 6459 7210 271047238 271047985 0.000000e+00 1031.0
33 TraesCS5A01G351900 chr2A 77.432 514 60 40 5513 5987 271037117 271037613 1.090000e-63 255.0
34 TraesCS5A01G351900 chr2A 78.836 189 17 14 5802 5987 271047068 271047236 1.170000e-18 106.0
35 TraesCS5A01G351900 chr2A 87.500 80 7 2 5909 5987 738139812 738139889 1.170000e-13 89.8
36 TraesCS5A01G351900 chr2A 85.185 81 9 3 8018 8097 173413684 173413762 7.070000e-11 80.5
37 TraesCS5A01G351900 chr3A 94.441 3202 157 18 2492 5686 396699323 396702510 0.000000e+00 4907.0
38 TraesCS5A01G351900 chr3A 79.538 303 49 12 8049 8345 57028632 57028337 4.020000e-48 204.0
39 TraesCS5A01G351900 chr7A 93.896 3244 184 11 2492 5731 370481328 370478095 0.000000e+00 4881.0
40 TraesCS5A01G351900 chr7A 94.230 3206 166 12 2478 5676 251074632 251077825 0.000000e+00 4878.0
41 TraesCS5A01G351900 chr7A 95.359 711 29 2 2033 2742 609347678 609348385 0.000000e+00 1127.0
42 TraesCS5A01G351900 chr7A 77.686 484 82 20 7999 8466 206586993 206586520 1.090000e-68 272.0
43 TraesCS5A01G351900 chr7A 85.366 82 8 4 8018 8097 35589898 35589819 1.960000e-11 82.4
44 TraesCS5A01G351900 chr7A 74.500 200 28 17 7914 8103 45685700 45685886 1.980000e-06 65.8
45 TraesCS5A01G351900 chr6A 94.222 3202 172 12 2492 5687 487648441 487645247 0.000000e+00 4876.0
46 TraesCS5A01G351900 chr6A 94.017 3226 166 25 2492 5706 158255955 158259164 0.000000e+00 4863.0
47 TraesCS5A01G351900 chr6A 92.175 754 54 3 6459 7210 249574515 249573765 0.000000e+00 1061.0
48 TraesCS5A01G351900 chr6A 90.559 752 63 5 6461 7210 322368759 322369504 0.000000e+00 989.0
49 TraesCS5A01G351900 chr6A 77.000 300 53 14 8176 8466 603087594 603087886 3.170000e-34 158.0
50 TraesCS5A01G351900 chr6A 89.610 77 6 2 5913 5987 322368679 322368755 7.020000e-16 97.1
51 TraesCS5A01G351900 chr6A 92.982 57 3 1 5932 5987 249574573 249574517 1.960000e-11 82.4
52 TraesCS5A01G351900 chr4A 89.978 3622 305 40 2033 5637 344478824 344482404 0.000000e+00 4625.0
53 TraesCS5A01G351900 chr4A 80.392 255 33 15 8090 8334 38726255 38726008 2.440000e-40 178.0
54 TraesCS5A01G351900 chr5D 96.473 1361 46 2 674 2032 438722533 438721173 0.000000e+00 2246.0
55 TraesCS5A01G351900 chr5D 94.429 1113 39 7 675 1785 438658642 438657551 0.000000e+00 1690.0
56 TraesCS5A01G351900 chr5D 83.382 1366 183 27 685 2032 438569614 438568275 0.000000e+00 1225.0
57 TraesCS5A01G351900 chr5D 83.128 1381 185 38 681 2036 438589794 438588437 0.000000e+00 1216.0
58 TraesCS5A01G351900 chr5D 91.568 676 38 11 7210 7870 438721178 438720507 0.000000e+00 915.0
59 TraesCS5A01G351900 chr5D 79.339 1331 227 38 723 2036 438545273 438543974 0.000000e+00 891.0
60 TraesCS5A01G351900 chr5D 78.664 1228 223 32 830 2036 438438823 438437614 0.000000e+00 780.0
61 TraesCS5A01G351900 chr5D 86.266 699 52 17 1 680 438723239 438722566 0.000000e+00 719.0
62 TraesCS5A01G351900 chr5D 87.023 655 49 14 38 680 438659306 438658676 0.000000e+00 706.0
63 TraesCS5A01G351900 chr5D 91.630 454 25 7 8031 8476 438720244 438719796 4.360000e-172 616.0
64 TraesCS5A01G351900 chr5D 87.216 485 59 3 7210 7693 438624064 438623582 4.480000e-152 549.0
65 TraesCS5A01G351900 chr5D 80.354 509 82 17 7210 7709 438568280 438567781 3.740000e-98 370.0
66 TraesCS5A01G351900 chr5B 95.081 1362 51 10 674 2032 533573226 533571878 0.000000e+00 2130.0
67 TraesCS5A01G351900 chr5B 92.962 1222 76 6 820 2032 533515388 533514168 0.000000e+00 1772.0
68 TraesCS5A01G351900 chr5B 89.662 977 73 13 1062 2032 533565266 533564312 0.000000e+00 1219.0
69 TraesCS5A01G351900 chr5B 83.849 1294 170 23 751 2032 533451460 533450194 0.000000e+00 1195.0
70 TraesCS5A01G351900 chr5B 86.900 687 59 18 1 680 533573919 533573257 0.000000e+00 741.0
71 TraesCS5A01G351900 chr5B 90.337 445 35 3 7210 7647 533571883 533571440 2.060000e-160 577.0
72 TraesCS5A01G351900 chr5B 91.479 399 32 2 681 1077 533565679 533565281 1.610000e-151 547.0
73 TraesCS5A01G351900 chr5B 88.046 435 44 5 7210 7638 533514173 533513741 7.610000e-140 508.0
74 TraesCS5A01G351900 chr5B 86.607 448 50 7 7210 7650 533564317 533563873 3.560000e-133 486.0
75 TraesCS5A01G351900 chr5B 91.193 352 26 2 1 347 533523879 533523528 2.770000e-129 473.0
76 TraesCS5A01G351900 chr5B 86.091 417 51 5 86 498 533566373 533565960 7.820000e-120 442.0
77 TraesCS5A01G351900 chr5B 80.315 508 81 17 7210 7708 533450199 533449702 4.840000e-97 366.0
78 TraesCS5A01G351900 chr5B 79.337 513 87 14 2 503 533473027 533472523 8.160000e-90 342.0
79 TraesCS5A01G351900 chr5B 83.566 286 40 6 400 680 533519590 533519307 2.350000e-65 261.0
80 TraesCS5A01G351900 chr5B 82.249 169 30 0 190 358 533494971 533494803 6.870000e-31 147.0
81 TraesCS5A01G351900 chrUn 82.087 1083 159 24 843 1910 63291953 63290891 0.000000e+00 893.0
82 TraesCS5A01G351900 chr7B 78.125 416 71 17 7996 8399 243277444 243277037 6.580000e-61 246.0
83 TraesCS5A01G351900 chr2B 75.439 627 87 38 7898 8467 212111585 212112201 8.520000e-60 243.0
84 TraesCS5A01G351900 chr1B 77.778 369 44 21 8089 8432 614273238 614273593 8.700000e-45 193.0
85 TraesCS5A01G351900 chr4D 78.571 308 45 17 8184 8478 481204970 481205269 5.240000e-42 183.0
86 TraesCS5A01G351900 chr6B 81.405 242 26 17 7996 8226 46976730 46976497 6.770000e-41 180.0
87 TraesCS5A01G351900 chr7D 78.378 259 44 10 8095 8345 55226659 55226913 3.170000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G351900 chr5A 554211035 554219527 8492 True 7408.000000 11057 100.000000 1 8493 2 chr5A.!!$R6 8492
1 TraesCS5A01G351900 chr5A 100521473 100524958 3485 False 4538.000000 4538 90.178000 2478 5987 1 chr5A.!!$F2 3509
2 TraesCS5A01G351900 chr5A 100513640 100515423 1783 False 2141.000000 2141 88.355000 4187 5987 1 chr5A.!!$F1 1800
3 TraesCS5A01G351900 chr5A 554234438 554237026 2588 True 1181.666667 2132 90.322000 1 7743 3 chr5A.!!$R7 7742
4 TraesCS5A01G351900 chr5A 637493922 637494625 703 True 996.000000 996 92.232000 6507 7210 1 chr5A.!!$R3 703
5 TraesCS5A01G351900 chr5A 554181120 554182809 1689 True 751.000000 1134 82.148500 819 7709 2 chr5A.!!$R4 6890
6 TraesCS5A01G351900 chr5A 554200103 554202156 2053 True 664.500000 1177 82.788000 190 2036 2 chr5A.!!$R5 1846
7 TraesCS5A01G351900 chr1A 174736636 174740239 3603 True 5240.000000 5240 92.922000 2036 5642 1 chr1A.!!$R2 3606
8 TraesCS5A01G351900 chr1A 174694517 174698121 3604 True 5186.000000 5186 92.646000 2036 5642 1 chr1A.!!$R1 3606
9 TraesCS5A01G351900 chr1A 86667059 86670267 3208 False 4878.000000 4878 94.123000 2478 5685 1 chr1A.!!$F1 3207
10 TraesCS5A01G351900 chr1A 309409000 309410548 1548 False 1602.000000 1602 85.732000 2033 3567 1 chr1A.!!$F2 1534
11 TraesCS5A01G351900 chr1A 439647327 439648077 750 False 1175.000000 1175 94.940000 6461 7210 1 chr1A.!!$F4 749
12 TraesCS5A01G351900 chr1A 574983878 574984566 688 False 1002.000000 1002 92.939000 6521 7210 1 chr1A.!!$F5 689
13 TraesCS5A01G351900 chr2A 321873337 321876546 3209 False 4924.000000 4924 94.372000 2478 5685 1 chr2A.!!$F3 3207
14 TraesCS5A01G351900 chr2A 115645135 115648634 3499 True 4495.000000 4495 89.895000 2478 5987 1 chr2A.!!$R1 3509
15 TraesCS5A01G351900 chr2A 364715974 364719612 3638 False 3795.000000 3795 85.660000 2030 5686 1 chr2A.!!$F4 3656
16 TraesCS5A01G351900 chr2A 572729488 572731910 2422 False 3273.000000 3273 91.111000 3571 5987 1 chr2A.!!$F5 2416
17 TraesCS5A01G351900 chr2A 541309691 541313229 3538 True 3175.000000 3175 83.208000 2036 5564 1 chr2A.!!$R4 3528
18 TraesCS5A01G351900 chr2A 658434561 658437905 3344 True 2070.500000 3088 92.044000 3571 7210 2 chr2A.!!$R5 3639
19 TraesCS5A01G351900 chr2A 156881460 156883568 2108 True 1995.000000 1995 84.294000 2036 4114 1 chr2A.!!$R2 2078
20 TraesCS5A01G351900 chr2A 150994919 150995669 750 False 1038.000000 1038 91.678000 6459 7210 1 chr2A.!!$F1 751
21 TraesCS5A01G351900 chr2A 371360149 371360983 834 True 1033.000000 1033 89.112000 2036 2871 1 chr2A.!!$R3 835
22 TraesCS5A01G351900 chr2A 271037117 271038365 1248 False 649.500000 1044 84.610000 5513 7210 2 chr2A.!!$F7 1697
23 TraesCS5A01G351900 chr2A 271047068 271047985 917 False 568.500000 1031 85.185000 5802 7210 2 chr2A.!!$F8 1408
24 TraesCS5A01G351900 chr3A 396699323 396702510 3187 False 4907.000000 4907 94.441000 2492 5686 1 chr3A.!!$F1 3194
25 TraesCS5A01G351900 chr7A 370478095 370481328 3233 True 4881.000000 4881 93.896000 2492 5731 1 chr7A.!!$R3 3239
26 TraesCS5A01G351900 chr7A 251074632 251077825 3193 False 4878.000000 4878 94.230000 2478 5676 1 chr7A.!!$F2 3198
27 TraesCS5A01G351900 chr7A 609347678 609348385 707 False 1127.000000 1127 95.359000 2033 2742 1 chr7A.!!$F3 709
28 TraesCS5A01G351900 chr6A 487645247 487648441 3194 True 4876.000000 4876 94.222000 2492 5687 1 chr6A.!!$R1 3195
29 TraesCS5A01G351900 chr6A 158255955 158259164 3209 False 4863.000000 4863 94.017000 2492 5706 1 chr6A.!!$F1 3214
30 TraesCS5A01G351900 chr6A 249573765 249574573 808 True 571.700000 1061 92.578500 5932 7210 2 chr6A.!!$R2 1278
31 TraesCS5A01G351900 chr6A 322368679 322369504 825 False 543.050000 989 90.084500 5913 7210 2 chr6A.!!$F3 1297
32 TraesCS5A01G351900 chr4A 344478824 344482404 3580 False 4625.000000 4625 89.978000 2033 5637 1 chr4A.!!$F1 3604
33 TraesCS5A01G351900 chr5D 438588437 438589794 1357 True 1216.000000 1216 83.128000 681 2036 1 chr5D.!!$R3 1355
34 TraesCS5A01G351900 chr5D 438657551 438659306 1755 True 1198.000000 1690 90.726000 38 1785 2 chr5D.!!$R6 1747
35 TraesCS5A01G351900 chr5D 438719796 438723239 3443 True 1124.000000 2246 91.484250 1 8476 4 chr5D.!!$R7 8475
36 TraesCS5A01G351900 chr5D 438543974 438545273 1299 True 891.000000 891 79.339000 723 2036 1 chr5D.!!$R2 1313
37 TraesCS5A01G351900 chr5D 438567781 438569614 1833 True 797.500000 1225 81.868000 685 7709 2 chr5D.!!$R5 7024
38 TraesCS5A01G351900 chr5D 438437614 438438823 1209 True 780.000000 780 78.664000 830 2036 1 chr5D.!!$R1 1206
39 TraesCS5A01G351900 chr5B 533571440 533573919 2479 True 1149.333333 2130 90.772667 1 7647 3 chr5B.!!$R6 7646
40 TraesCS5A01G351900 chr5B 533449702 533451460 1758 True 780.500000 1195 82.082000 751 7708 2 chr5B.!!$R3 6957
41 TraesCS5A01G351900 chr5B 533513741 533523879 10138 True 753.500000 1772 88.941750 1 7638 4 chr5B.!!$R4 7637
42 TraesCS5A01G351900 chr5B 533563873 533566373 2500 True 673.500000 1219 88.459750 86 7650 4 chr5B.!!$R5 7564
43 TraesCS5A01G351900 chr5B 533472523 533473027 504 True 342.000000 342 79.337000 2 503 1 chr5B.!!$R1 501
44 TraesCS5A01G351900 chrUn 63290891 63291953 1062 True 893.000000 893 82.087000 843 1910 1 chrUn.!!$R1 1067
45 TraesCS5A01G351900 chr2B 212111585 212112201 616 False 243.000000 243 75.439000 7898 8467 1 chr2B.!!$F1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 4714 2.365293 ACAAACCACATTCCCTTCTTGC 59.635 45.455 0.00 0.00 0.00 4.01 F
718 5008 4.110482 CGTGGGTTATTTCCTCTAGTTCG 58.890 47.826 0.00 0.00 0.00 3.95 F
1890 9897 1.274728 CCATGGGATTCTCTAGCCTCG 59.725 57.143 2.85 0.00 0.00 4.63 F
2396 10418 0.459411 CGGTACATGTGCCATGTCGA 60.459 55.000 29.27 5.65 34.83 4.20 F
3937 12054 0.037790 GCTATAAGAGGGGCTGAGCG 60.038 60.000 0.00 0.00 0.00 5.03 F
5584 13728 0.741326 TGATGTACTCTCTGAGGCGC 59.259 55.000 0.00 0.00 33.35 6.53 F
5738 13891 0.031585 CGATTTACGAGGATGGCCGA 59.968 55.000 0.00 0.00 45.77 5.54 F
7214 15435 0.909623 ATCCGGGGTGTTACAGGAAG 59.090 55.000 0.00 0.00 34.35 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 9749 0.249120 TCAGGAGCCATGTAACCACG 59.751 55.000 0.00 0.00 0.00 4.94 R
2073 10094 1.457831 GGGCCAGTCTAGATCCCGT 60.458 63.158 4.39 0.00 0.00 5.28 R
2856 10894 0.400975 AGATGCAGGGCCTGATGATC 59.599 55.000 37.07 28.67 32.44 2.92 R
4016 12136 0.108138 ACGATGCCTACCACTTGCTC 60.108 55.000 0.00 0.00 0.00 4.26 R
5721 13874 0.828022 TGTCGGCCATCCTCGTAAAT 59.172 50.000 2.24 0.00 0.00 1.40 R
6822 15042 0.030369 CGATTAACCGAGGGACCGAG 59.970 60.000 0.00 0.00 0.00 4.63 R
7216 15437 0.323178 CCTGCAGCTCATTGGTCCTT 60.323 55.000 8.66 0.00 0.00 3.36 R
8319 16692 9.719279 ACAAGCATTTGAAAAATGTTAAATGTG 57.281 25.926 12.82 5.88 40.70 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 270 2.854963 ACAAAGAGCAATGCAGTGAGA 58.145 42.857 20.00 0.00 0.00 3.27
283 306 6.309980 CAGTTGTAAGCTCTAGTGTTCTGATG 59.690 42.308 0.00 0.00 0.00 3.07
292 315 6.721704 TCTAGTGTTCTGATGCTCATATGT 57.278 37.500 1.90 0.00 0.00 2.29
389 4339 2.791655 TGAGAGAGTATGTGTCACCGT 58.208 47.619 0.00 0.00 0.00 4.83
406 4356 4.341806 TCACCGTCTAAACTTGGACTACAA 59.658 41.667 4.70 0.00 36.63 2.41
413 4363 6.580416 GTCTAAACTTGGACTACAACGTCTAC 59.420 42.308 0.00 0.00 35.98 2.59
452 4443 9.907229 ACCCTTAGATTACAAAATCCTCTAAAG 57.093 33.333 0.00 0.00 42.20 1.85
473 4467 4.769688 AGCACATGAATGGAAACGAGATA 58.230 39.130 0.00 0.00 0.00 1.98
598 4714 2.365293 ACAAACCACATTCCCTTCTTGC 59.635 45.455 0.00 0.00 0.00 4.01
718 5008 4.110482 CGTGGGTTATTTCCTCTAGTTCG 58.890 47.826 0.00 0.00 0.00 3.95
995 8935 4.280677 CCTTTGCAACCCACAATTTCTCTA 59.719 41.667 0.00 0.00 0.00 2.43
1334 9314 5.749462 AGTATCTGCCAAACAAGAGCTTAT 58.251 37.500 0.00 0.00 0.00 1.73
1672 9661 6.407202 GTTGTTGGAACATAGTGAGTATCCT 58.593 40.000 0.00 0.00 39.30 3.24
1881 9888 5.044179 TCCATTAGTCAAACCATGGGATTCT 60.044 40.000 18.09 9.93 37.39 2.40
1890 9897 1.274728 CCATGGGATTCTCTAGCCTCG 59.725 57.143 2.85 0.00 0.00 4.63
1925 9935 7.747799 GTGAGTACACATGAATTCTGTCAAATG 59.252 37.037 7.05 3.51 45.32 2.32
1954 9967 6.254281 ACGAAAAGTGGATCAAATACAAGG 57.746 37.500 0.00 0.00 0.00 3.61
1956 9969 6.149474 ACGAAAAGTGGATCAAATACAAGGAG 59.851 38.462 0.00 0.00 0.00 3.69
2051 10072 3.819877 GAAACGCCCCGGACACACT 62.820 63.158 0.73 0.00 0.00 3.55
2073 10094 1.246056 CCGGTGGTCGTTACTCCTGA 61.246 60.000 0.00 0.00 37.11 3.86
2122 10143 1.419374 ACTAGTCTTTTCTGCGCACG 58.581 50.000 5.66 2.75 0.00 5.34
2156 10177 2.597510 GCACCCGGGAGCAACTTT 60.598 61.111 34.66 3.75 0.00 2.66
2190 10211 2.169352 CCATCCTGACACTACTCCAAGG 59.831 54.545 0.00 0.00 0.00 3.61
2285 10307 5.224441 AGTCTACCATCCCTAATAAGCCAA 58.776 41.667 0.00 0.00 0.00 4.52
2396 10418 0.459411 CGGTACATGTGCCATGTCGA 60.459 55.000 29.27 5.65 34.83 4.20
2589 10611 3.375299 GTCGCAAGTTAGGCAATCTTCAT 59.625 43.478 0.00 0.00 39.48 2.57
2924 10967 1.078918 CTCAGCAATCTCGCACCCA 60.079 57.895 0.00 0.00 0.00 4.51
3072 11139 3.166679 AGCGAGAAACTAGAGGGAAACT 58.833 45.455 0.00 0.00 0.00 2.66
3109 11177 0.253610 AACACCGTGTTCACTTCCCA 59.746 50.000 11.24 0.00 35.27 4.37
3937 12054 0.037790 GCTATAAGAGGGGCTGAGCG 60.038 60.000 0.00 0.00 0.00 5.03
4016 12136 3.582998 TGGAAATATGGGAGGCTTGAG 57.417 47.619 0.00 0.00 0.00 3.02
4226 12356 4.470334 AACAAGCAACAAGGACACAATT 57.530 36.364 0.00 0.00 0.00 2.32
4329 12464 3.084039 GACAAGGAATGCATGAACCTGA 58.916 45.455 17.20 0.00 32.73 3.86
4339 12474 3.072330 TGCATGAACCTGACCTCAACTTA 59.928 43.478 0.00 0.00 0.00 2.24
4353 12488 6.365520 ACCTCAACTTAGAAATCCAAGTGTT 58.634 36.000 0.00 0.00 35.23 3.32
4376 12511 5.879763 TCCACTGGAAAGATGAGATGAAAA 58.120 37.500 0.00 0.00 0.00 2.29
4387 12522 6.738114 AGATGAGATGAAAACGCTTGAAAAA 58.262 32.000 0.00 0.00 0.00 1.94
4522 12657 1.240641 TACAGCACCCAAACATGGCG 61.241 55.000 0.00 0.00 0.00 5.69
4552 12687 0.757561 TGGCAGGGATGCATTCATGG 60.758 55.000 20.66 3.74 36.33 3.66
4640 12777 6.233434 TGGCAAAAATGCATATGGTAAACAA 58.767 32.000 0.00 0.00 36.33 2.83
4737 12875 1.279271 GCTACAGGACCTGAACATGGT 59.721 52.381 28.56 6.12 41.07 3.55
4917 13058 7.564793 ACAGATATCAAGTAGGCATGTTTACA 58.435 34.615 5.32 0.00 0.00 2.41
4919 13060 8.892723 CAGATATCAAGTAGGCATGTTTACAAA 58.107 33.333 5.32 0.00 0.00 2.83
5025 13166 5.981315 GCAAGAACAATAACATAGCATGCAT 59.019 36.000 21.98 8.63 0.00 3.96
5075 13217 5.386958 TCGCTAACAAGTAGACAATCTGT 57.613 39.130 0.00 0.00 30.50 3.41
5150 13292 6.812656 TGCTCCATAATTGCAAACAAATACAG 59.187 34.615 1.71 0.00 39.77 2.74
5162 13304 6.491403 GCAAACAAATACAGGGATGGATAGAT 59.509 38.462 0.00 0.00 0.00 1.98
5298 13440 3.252974 ACTGCTAAGTCCCTGAAATCG 57.747 47.619 0.00 0.00 26.77 3.34
5584 13728 0.741326 TGATGTACTCTCTGAGGCGC 59.259 55.000 0.00 0.00 33.35 6.53
5606 13750 5.450066 CGCACATTTTGATATGCTATATGCG 59.550 40.000 0.00 0.00 46.63 4.73
5687 13838 1.358152 TCGGGAGAAAGTCAACCCAT 58.642 50.000 0.00 0.00 42.16 4.00
5693 13844 4.100963 GGGAGAAAGTCAACCCATGTTTTT 59.899 41.667 0.00 0.00 41.72 1.94
5707 13858 7.872138 ACCCATGTTTTTGGATCTAGATCTAA 58.128 34.615 27.65 25.50 39.25 2.10
5708 13859 7.995488 ACCCATGTTTTTGGATCTAGATCTAAG 59.005 37.037 27.65 16.97 39.05 2.18
5709 13860 8.213679 CCCATGTTTTTGGATCTAGATCTAAGA 58.786 37.037 27.65 21.43 39.05 2.10
5710 13861 9.790344 CCATGTTTTTGGATCTAGATCTAAGAT 57.210 33.333 27.65 17.84 39.05 2.40
5721 13874 3.149981 AGATCTAAGATCCGATGCACGA 58.850 45.455 9.75 0.00 45.77 4.35
5738 13891 0.031585 CGATTTACGAGGATGGCCGA 59.968 55.000 0.00 0.00 45.77 5.54
5825 14007 3.459063 GGAGTAGAAGGCGGCGGT 61.459 66.667 9.78 0.00 0.00 5.68
5875 14087 4.821589 GGAAGTGGCTCCGGCGAG 62.822 72.222 9.30 5.11 39.81 5.03
5876 14088 4.821589 GAAGTGGCTCCGGCGAGG 62.822 72.222 9.30 0.83 39.81 4.63
6702 14922 4.798882 CATAGAGGGAGTTAGGAGTGTCT 58.201 47.826 0.00 0.00 0.00 3.41
6822 15042 1.941812 CAACACACACGAGGCCTTC 59.058 57.895 6.77 0.00 0.00 3.46
6839 15059 1.755380 CTTCTCGGTCCCTCGGTTAAT 59.245 52.381 0.00 0.00 0.00 1.40
6868 15088 5.642063 GGAGTATCAAACGAAGTCCAAATGA 59.358 40.000 0.00 0.00 36.47 2.57
6950 15170 6.127451 GGTCCAATCCGAAAATGTTTAATCCT 60.127 38.462 0.00 0.00 0.00 3.24
6983 15203 3.581332 AGAAAGGTAGAAATGACCACCGA 59.419 43.478 0.00 0.00 39.65 4.69
6986 15206 3.170717 AGGTAGAAATGACCACCGAAGA 58.829 45.455 0.00 0.00 39.65 2.87
7033 15253 1.241315 ACAACGGGGAAAATGCTCGG 61.241 55.000 0.00 0.00 0.00 4.63
7058 15278 3.544834 GCATGAGATGAACACGTATGCAC 60.545 47.826 8.79 0.00 39.25 4.57
7191 15412 8.747538 AGAGTTGGATTACATATTGGGTAAAC 57.252 34.615 0.00 0.00 34.67 2.01
7210 15431 1.766496 ACCATATCCGGGGTGTTACAG 59.234 52.381 0.00 0.00 35.67 2.74
7211 15432 1.071699 CCATATCCGGGGTGTTACAGG 59.928 57.143 0.00 0.00 0.00 4.00
7212 15433 2.043992 CATATCCGGGGTGTTACAGGA 58.956 52.381 0.00 0.00 35.24 3.86
7213 15434 2.250921 TATCCGGGGTGTTACAGGAA 57.749 50.000 0.00 0.00 34.35 3.36
7214 15435 0.909623 ATCCGGGGTGTTACAGGAAG 59.090 55.000 0.00 0.00 34.35 3.46
7215 15436 0.178926 TCCGGGGTGTTACAGGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
7216 15437 0.688487 CCGGGGTGTTACAGGAAGAA 59.312 55.000 0.00 0.00 0.00 2.52
7233 15454 1.074405 AGAAAGGACCAATGAGCTGCA 59.926 47.619 1.02 0.00 0.00 4.41
7250 15471 4.280677 AGCTGCAGGACTCATCTATCTTAC 59.719 45.833 17.12 0.00 0.00 2.34
7316 15537 1.128188 GTGTGTCCAGGAGAACCCCT 61.128 60.000 0.00 0.00 36.90 4.79
7446 15673 6.041511 CGAATCAGATCAGAACTGACATTCT 58.958 40.000 12.35 3.97 45.19 2.40
7447 15674 6.534436 CGAATCAGATCAGAACTGACATTCTT 59.466 38.462 12.35 3.23 45.19 2.52
7451 15678 7.542890 TCAGATCAGAACTGACATTCTTAGAC 58.457 38.462 6.29 0.00 43.11 2.59
7497 15724 4.895889 TGAGATAGAGGGACGATGAAACAT 59.104 41.667 0.00 0.00 0.00 2.71
7538 15769 1.927174 CGAAATGCTCTCGACGGAAAT 59.073 47.619 0.00 0.00 38.61 2.17
7757 16007 5.238650 AGACGTTTTTGCAAGCTATGTTAGT 59.761 36.000 0.00 0.00 0.00 2.24
7814 16074 8.622948 AATCGTTTCTTTCTCCATTCTTACTT 57.377 30.769 0.00 0.00 0.00 2.24
7873 16135 7.609760 ATTCAGGTTGTTTTTCTTTTTGTCC 57.390 32.000 0.00 0.00 0.00 4.02
7875 16137 7.469537 TCAGGTTGTTTTTCTTTTTGTCCTA 57.530 32.000 0.00 0.00 0.00 2.94
7876 16138 8.073467 TCAGGTTGTTTTTCTTTTTGTCCTAT 57.927 30.769 0.00 0.00 0.00 2.57
7877 16139 8.536175 TCAGGTTGTTTTTCTTTTTGTCCTATT 58.464 29.630 0.00 0.00 0.00 1.73
7878 16140 8.817100 CAGGTTGTTTTTCTTTTTGTCCTATTC 58.183 33.333 0.00 0.00 0.00 1.75
7879 16141 7.985184 AGGTTGTTTTTCTTTTTGTCCTATTCC 59.015 33.333 0.00 0.00 0.00 3.01
7880 16142 7.985184 GGTTGTTTTTCTTTTTGTCCTATTCCT 59.015 33.333 0.00 0.00 0.00 3.36
7881 16143 9.378551 GTTGTTTTTCTTTTTGTCCTATTCCTT 57.621 29.630 0.00 0.00 0.00 3.36
7882 16144 9.952030 TTGTTTTTCTTTTTGTCCTATTCCTTT 57.048 25.926 0.00 0.00 0.00 3.11
7883 16145 9.952030 TGTTTTTCTTTTTGTCCTATTCCTTTT 57.048 25.926 0.00 0.00 0.00 2.27
7885 16147 9.952030 TTTTTCTTTTTGTCCTATTCCTTTTGT 57.048 25.926 0.00 0.00 0.00 2.83
7886 16148 9.952030 TTTTCTTTTTGTCCTATTCCTTTTGTT 57.048 25.926 0.00 0.00 0.00 2.83
7887 16149 9.952030 TTTCTTTTTGTCCTATTCCTTTTGTTT 57.048 25.926 0.00 0.00 0.00 2.83
7888 16150 9.952030 TTCTTTTTGTCCTATTCCTTTTGTTTT 57.048 25.926 0.00 0.00 0.00 2.43
7889 16151 9.952030 TCTTTTTGTCCTATTCCTTTTGTTTTT 57.048 25.926 0.00 0.00 0.00 1.94
7927 16189 7.821846 TGCATTTCTTTCTTTGGTTTACTTTGT 59.178 29.630 0.00 0.00 0.00 2.83
7937 16199 9.990360 TCTTTGGTTTACTTTGTTTCTTTTTCT 57.010 25.926 0.00 0.00 0.00 2.52
8015 16300 7.555554 TCAACAACATTTCAACATTTTCCCAAT 59.444 29.630 0.00 0.00 0.00 3.16
8356 16755 9.688592 TTTTTCAAATGCTTGTTCAATGTTTTT 57.311 22.222 0.00 0.00 33.94 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 270 3.384467 AGCTTACAACTGGCAACACAATT 59.616 39.130 0.00 0.00 46.17 2.32
283 306 4.277515 TGCAAGGGAGATACATATGAGC 57.722 45.455 10.38 0.00 0.00 4.26
292 315 6.894654 TGAATTTTAACCATGCAAGGGAGATA 59.105 34.615 13.45 0.00 43.46 1.98
389 4339 5.779529 AGACGTTGTAGTCCAAGTTTAGA 57.220 39.130 0.00 0.00 41.83 2.10
406 4356 4.022849 GGGTATATTGCGGTAAGTAGACGT 60.023 45.833 0.00 0.00 0.00 4.34
413 4363 8.308931 TGTAATCTAAGGGTATATTGCGGTAAG 58.691 37.037 0.00 0.00 0.00 2.34
452 4443 5.484173 TTATCTCGTTTCCATTCATGTGC 57.516 39.130 0.00 0.00 0.00 4.57
575 4569 2.876581 AGAAGGGAATGTGGTTTGTCC 58.123 47.619 0.00 0.00 0.00 4.02
598 4714 4.380678 CGATTGCATGAATATGAAAAGCGG 59.619 41.667 0.00 0.00 35.48 5.52
995 8935 2.094078 CCCGTCCAATCATGCATGTTTT 60.094 45.455 25.43 17.14 0.00 2.43
1334 9314 2.088423 CGCACCAAAAAGGGTAGCATA 58.912 47.619 0.00 0.00 43.89 3.14
1698 9697 5.414765 GGTGTCTAATGGGAGTTAAACTTGG 59.585 44.000 0.00 0.00 0.00 3.61
1746 9749 0.249120 TCAGGAGCCATGTAACCACG 59.751 55.000 0.00 0.00 0.00 4.94
1881 9888 6.111669 ACTCACATATACTACGAGGCTAGA 57.888 41.667 0.28 0.00 0.00 2.43
1925 9935 4.977741 TTGATCCACTTTTCGTAACGAC 57.022 40.909 0.00 0.00 34.89 4.34
2051 10072 2.981560 GAGTAACGACCACCGGCGA 61.982 63.158 9.30 0.00 43.93 5.54
2073 10094 1.457831 GGGCCAGTCTAGATCCCGT 60.458 63.158 4.39 0.00 0.00 5.28
2122 10143 2.658707 GCGCACGAGTGAGGACAAC 61.659 63.158 0.30 0.00 0.00 3.32
2190 10211 1.871039 TCCAAAGTTAAGCGTGCTCAC 59.129 47.619 0.00 0.00 0.00 3.51
2285 10307 1.768870 GTGGGGGTGTATGTGATAGCT 59.231 52.381 0.00 0.00 0.00 3.32
2396 10418 4.295119 GTGACCCGTCGTGGCACT 62.295 66.667 16.72 0.00 35.87 4.40
2476 10498 5.512576 GGGTGTTACAAGTTGGTATCAGAGT 60.513 44.000 7.96 0.00 0.00 3.24
2537 10559 5.239306 CCTTCAATGCGATTATGCCTCTAAA 59.761 40.000 0.00 0.00 0.00 1.85
2791 10829 5.333492 CGAGGACTCTCAATGATACTACGTC 60.333 48.000 0.00 0.00 39.95 4.34
2856 10894 0.400975 AGATGCAGGGCCTGATGATC 59.599 55.000 37.07 28.67 32.44 2.92
2924 10967 4.683832 AGCTTAAATAGTCTTGATCGCGT 58.316 39.130 5.77 0.00 0.00 6.01
2999 11046 2.308570 TGTGAACAGGATAGCCACCATT 59.691 45.455 0.00 0.00 36.29 3.16
3109 11177 1.027792 GTCTCTTCTCGGCGGAGTCT 61.028 60.000 19.51 0.00 41.26 3.24
3407 11479 3.054139 TGCAGCTCCTATCAGGATTTGTT 60.054 43.478 0.00 0.00 44.81 2.83
3857 11946 9.743057 CTTGTTGGAACATTATTTACTTGTTGA 57.257 29.630 0.00 0.00 39.30 3.18
3937 12054 3.202906 TGATTGGCTATGTTACCGCTTC 58.797 45.455 0.00 0.00 0.00 3.86
4016 12136 0.108138 ACGATGCCTACCACTTGCTC 60.108 55.000 0.00 0.00 0.00 4.26
4226 12356 2.550606 GTTTGATCCTTGCACGTGGTTA 59.449 45.455 18.88 0.00 0.00 2.85
4306 12441 3.128242 CAGGTTCATGCATTCCTTGTCTC 59.872 47.826 10.91 0.00 0.00 3.36
4307 12442 3.087031 CAGGTTCATGCATTCCTTGTCT 58.913 45.455 10.91 0.00 0.00 3.41
4329 12464 5.941788 ACACTTGGATTTCTAAGTTGAGGT 58.058 37.500 6.59 0.39 43.74 3.85
4353 12488 5.503634 TTTCATCTCATCTTTCCAGTGGA 57.496 39.130 8.12 8.12 0.00 4.02
4376 12511 6.741358 GCGTTCTTTATATCTTTTTCAAGCGT 59.259 34.615 0.00 0.00 0.00 5.07
4387 12522 4.235360 CGATTCCGGCGTTCTTTATATCT 58.765 43.478 6.01 0.00 0.00 1.98
4522 12657 3.491447 GCATCCCTGCCATGTATTTTGTC 60.491 47.826 0.00 0.00 42.88 3.18
4552 12687 5.696724 TCAGTGCTAGACTTTTGTTAAGCTC 59.303 40.000 0.00 0.00 39.61 4.09
4737 12875 4.706476 AGCTTCATGCCATGCTTTACTTTA 59.294 37.500 0.00 0.00 44.23 1.85
4917 13058 3.255888 TCTGTAGTGAGTGCATCGAGTTT 59.744 43.478 0.00 0.00 0.00 2.66
4919 13060 2.421775 CTCTGTAGTGAGTGCATCGAGT 59.578 50.000 0.00 0.00 0.00 4.18
5025 13166 3.118775 CCGAGGATGTTGTAGTTGATCCA 60.119 47.826 0.00 0.00 37.44 3.41
5075 13217 7.504924 ACTTTTGTTATTTCGTGAATCTGGA 57.495 32.000 0.00 0.00 0.00 3.86
5150 13292 6.865834 ATCTTGTAGTGATCTATCCATCCC 57.134 41.667 0.00 0.00 0.00 3.85
5177 13319 8.089625 TGAGGATGATCAGTAAGGATGTTTTA 57.910 34.615 0.09 0.00 0.00 1.52
5279 13421 2.555199 CCGATTTCAGGGACTTAGCAG 58.445 52.381 0.00 0.00 34.60 4.24
5584 13728 6.316319 TGCGCATATAGCATATCAAAATGTG 58.684 36.000 5.66 0.00 46.13 3.21
5606 13750 2.163412 TGCATCCATAACTCCGTTTTGC 59.837 45.455 0.00 0.00 0.00 3.68
5707 13858 2.034179 TCGTAAATCGTGCATCGGATCT 59.966 45.455 8.46 0.00 40.80 2.75
5708 13859 2.390938 TCGTAAATCGTGCATCGGATC 58.609 47.619 8.46 0.00 40.80 3.36
5709 13860 2.394708 CTCGTAAATCGTGCATCGGAT 58.605 47.619 8.46 1.22 40.80 4.18
5710 13861 1.535226 CCTCGTAAATCGTGCATCGGA 60.535 52.381 8.46 0.00 40.80 4.55
5712 13863 1.835121 TCCTCGTAAATCGTGCATCG 58.165 50.000 0.00 0.00 40.80 3.84
5714 13867 2.483876 CCATCCTCGTAAATCGTGCAT 58.516 47.619 0.00 0.00 40.80 3.96
5715 13868 1.934589 CCATCCTCGTAAATCGTGCA 58.065 50.000 0.00 0.00 40.80 4.57
5721 13874 0.828022 TGTCGGCCATCCTCGTAAAT 59.172 50.000 2.24 0.00 0.00 1.40
5738 13891 2.279918 GTCGCCGGTGAACAGTGT 60.280 61.111 21.49 0.00 0.00 3.55
5771 13946 3.458163 CTCCACCTCGCCCGCTTA 61.458 66.667 0.00 0.00 0.00 3.09
6630 14846 0.691413 GGATCCCCTCCTCGAAACCT 60.691 60.000 0.00 0.00 41.29 3.50
6702 14922 1.807742 CCGAAAACCGCACCTCATTTA 59.192 47.619 0.00 0.00 36.84 1.40
6822 15042 0.030369 CGATTAACCGAGGGACCGAG 59.970 60.000 0.00 0.00 0.00 4.63
6839 15059 4.232221 GACTTCGTTTGATACTCCAACGA 58.768 43.478 10.87 10.87 32.34 3.85
6868 15088 1.001633 ACCGCCTGTCAAGTTTCGTAT 59.998 47.619 0.00 0.00 0.00 3.06
6936 15156 6.627395 TCGTGTGTGAGGATTAAACATTTT 57.373 33.333 0.00 0.00 0.00 1.82
6950 15170 4.659111 TCTACCTTTCTTTCGTGTGTGA 57.341 40.909 0.00 0.00 0.00 3.58
6983 15203 2.027625 CCGGCGCTTCGTTCTTCTT 61.028 57.895 7.64 0.00 0.00 2.52
6986 15206 1.375523 ATTCCGGCGCTTCGTTCTT 60.376 52.632 7.64 0.00 0.00 2.52
7033 15253 4.610007 GCATACGTGTTCATCTCATGCATC 60.610 45.833 0.00 0.00 37.74 3.91
7058 15278 3.157932 TGTCATCATGTGCATTGCATG 57.842 42.857 15.49 10.19 41.91 4.06
7085 15305 5.929415 TGTTGTTATCGTTGTCATGCTTCTA 59.071 36.000 0.00 0.00 0.00 2.10
7089 15309 3.812609 TGTGTTGTTATCGTTGTCATGCT 59.187 39.130 0.00 0.00 0.00 3.79
7191 15412 1.071699 CCTGTAACACCCCGGATATGG 59.928 57.143 0.73 0.00 0.00 2.74
7210 15431 2.751806 CAGCTCATTGGTCCTTTCTTCC 59.248 50.000 0.00 0.00 0.00 3.46
7211 15432 2.163211 GCAGCTCATTGGTCCTTTCTTC 59.837 50.000 0.00 0.00 0.00 2.87
7212 15433 2.165998 GCAGCTCATTGGTCCTTTCTT 58.834 47.619 0.00 0.00 0.00 2.52
7213 15434 1.074405 TGCAGCTCATTGGTCCTTTCT 59.926 47.619 0.00 0.00 0.00 2.52
7214 15435 1.471684 CTGCAGCTCATTGGTCCTTTC 59.528 52.381 0.00 0.00 0.00 2.62
7215 15436 1.542492 CTGCAGCTCATTGGTCCTTT 58.458 50.000 0.00 0.00 0.00 3.11
7216 15437 0.323178 CCTGCAGCTCATTGGTCCTT 60.323 55.000 8.66 0.00 0.00 3.36
7233 15454 9.073475 GTGAAGTATGTAAGATAGATGAGTCCT 57.927 37.037 0.00 0.00 0.00 3.85
7250 15471 7.318141 AGCAAAATTTCATCTGGTGAAGTATG 58.682 34.615 3.27 5.68 46.85 2.39
7316 15537 2.247358 TGACATGAGCGGCCTATCATA 58.753 47.619 16.60 2.49 34.42 2.15
7446 15673 5.069516 AGAGTAAAACTGTTCACGGGTCTAA 59.930 40.000 0.00 0.00 0.00 2.10
7447 15674 4.586001 AGAGTAAAACTGTTCACGGGTCTA 59.414 41.667 0.00 0.00 0.00 2.59
7451 15678 5.176958 CAGTAAGAGTAAAACTGTTCACGGG 59.823 44.000 0.00 0.00 36.66 5.28
7581 15815 8.715191 TTGAAAATGACATTGCTAACTTGTTT 57.285 26.923 0.34 0.00 0.00 2.83
7677 15920 5.482908 ACTGAGACTATTCTGCAAACGAAT 58.517 37.500 5.18 5.18 35.45 3.34
7782 16042 9.678941 GAATGGAGAAAGAAACGATTAAAAACT 57.321 29.630 0.00 0.00 0.00 2.66
7789 16049 8.622948 AAGTAAGAATGGAGAAAGAAACGATT 57.377 30.769 0.00 0.00 0.00 3.34
7853 16115 7.985184 GGAATAGGACAAAAAGAAAAACAACCT 59.015 33.333 0.00 0.00 0.00 3.50
7897 16159 9.225436 AGTAAACCAAAGAAAGAAATGCAAAAA 57.775 25.926 0.00 0.00 0.00 1.94
7898 16160 8.785329 AGTAAACCAAAGAAAGAAATGCAAAA 57.215 26.923 0.00 0.00 0.00 2.44
7899 16161 8.785329 AAGTAAACCAAAGAAAGAAATGCAAA 57.215 26.923 0.00 0.00 0.00 3.68
7900 16162 8.663911 CAAAGTAAACCAAAGAAAGAAATGCAA 58.336 29.630 0.00 0.00 0.00 4.08
7901 16163 7.821846 ACAAAGTAAACCAAAGAAAGAAATGCA 59.178 29.630 0.00 0.00 0.00 3.96
7902 16164 8.196802 ACAAAGTAAACCAAAGAAAGAAATGC 57.803 30.769 0.00 0.00 0.00 3.56
7906 16168 9.990360 AAGAAACAAAGTAAACCAAAGAAAGAA 57.010 25.926 0.00 0.00 0.00 2.52
8139 16504 9.796120 TCAAAAACTTTAAAGTGTGTATTGGAG 57.204 29.630 21.22 5.98 39.66 3.86
8319 16692 9.719279 ACAAGCATTTGAAAAATGTTAAATGTG 57.281 25.926 12.82 5.88 40.70 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.