Multiple sequence alignment - TraesCS5A01G351700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G351700 chr5A 100.000 3290 0 0 1 3290 554204773 554201484 0.000000e+00 6076.0
1 TraesCS5A01G351700 chr5A 79.908 1309 224 22 981 2282 554221266 554219990 0.000000e+00 924.0
2 TraesCS5A01G351700 chr5A 78.566 1423 260 28 972 2378 554238490 554237097 0.000000e+00 896.0
3 TraesCS5A01G351700 chr5A 82.840 169 29 0 2618 2786 554219338 554219170 5.690000e-33 152.0
4 TraesCS5A01G351700 chr5A 81.657 169 31 0 2618 2786 554236831 554236663 1.230000e-29 141.0
5 TraesCS5A01G351700 chr5A 90.625 64 6 0 512 575 554186988 554186925 5.850000e-13 86.1
6 TraesCS5A01G351700 chr5D 94.120 2228 85 12 626 2823 438592386 438590175 0.000000e+00 3347.0
7 TraesCS5A01G351700 chr5D 93.760 625 31 2 1202 1818 438688950 438688326 0.000000e+00 931.0
8 TraesCS5A01G351700 chr5D 78.786 1433 257 30 964 2378 438660799 438659396 0.000000e+00 918.0
9 TraesCS5A01G351700 chr5D 78.531 1430 264 26 964 2378 438724711 438723310 0.000000e+00 900.0
10 TraesCS5A01G351700 chr5D 90.495 505 18 4 2214 2694 438666019 438665521 9.950000e-180 640.0
11 TraesCS5A01G351700 chr5D 92.664 259 12 2 1958 2216 438684149 438683898 1.870000e-97 366.0
12 TraesCS5A01G351700 chr5D 84.267 375 46 6 2919 3290 438590175 438589811 1.450000e-93 353.0
13 TraesCS5A01G351700 chr5D 93.103 203 10 4 435 634 438592626 438592425 8.930000e-76 294.0
14 TraesCS5A01G351700 chr5D 90.000 190 14 5 264 450 438592986 438592799 1.180000e-59 241.0
15 TraesCS5A01G351700 chr5D 87.586 145 11 2 1811 1955 438685040 438684903 9.450000e-36 161.0
16 TraesCS5A01G351700 chr5D 95.050 101 5 0 264 364 438689093 438688993 3.400000e-35 159.0
17 TraesCS5A01G351700 chr5D 88.136 118 12 2 512 628 438572003 438571887 4.430000e-29 139.0
18 TraesCS5A01G351700 chr5D 81.988 161 29 0 2626 2786 438659137 438658977 1.590000e-28 137.0
19 TraesCS5A01G351700 chr5D 81.366 161 30 0 2626 2786 438723026 438722866 7.410000e-27 132.0
20 TraesCS5A01G351700 chr5B 92.960 2230 89 14 626 2823 533496958 533494765 0.000000e+00 3186.0
21 TraesCS5A01G351700 chr5B 79.176 1359 240 26 1038 2378 533575323 533573990 0.000000e+00 902.0
22 TraesCS5A01G351700 chr5B 77.444 1565 279 42 826 2352 533568060 533566532 0.000000e+00 867.0
23 TraesCS5A01G351700 chr5B 83.733 375 48 6 2919 3290 533494765 533494401 3.140000e-90 342.0
24 TraesCS5A01G351700 chr5B 94.186 172 9 1 260 430 533498317 533498146 9.060000e-66 261.0
25 TraesCS5A01G351700 chr5B 84.892 139 21 0 2619 2757 533523684 533523546 1.230000e-29 141.0
26 TraesCS5A01G351700 chr5B 81.657 169 31 0 2618 2786 533573725 533573557 1.230000e-29 141.0
27 TraesCS5A01G351700 chr4B 99.623 265 0 1 1 265 481232146 481232409 1.780000e-132 483.0
28 TraesCS5A01G351700 chr4A 99.251 267 2 0 1 267 740217665 740217931 1.780000e-132 483.0
29 TraesCS5A01G351700 chr4A 100.000 260 0 0 1 260 729294461 729294202 6.380000e-132 481.0
30 TraesCS5A01G351700 chr7A 100.000 260 0 0 1 260 732908085 732908344 6.380000e-132 481.0
31 TraesCS5A01G351700 chr2B 100.000 260 0 0 1 260 77770583 77770842 6.380000e-132 481.0
32 TraesCS5A01G351700 chr6B 100.000 259 0 0 1 259 179705157 179704899 2.300000e-131 479.0
33 TraesCS5A01G351700 chr6B 95.000 40 2 0 2569 2608 11029364 11029325 2.740000e-06 63.9
34 TraesCS5A01G351700 chr3A 99.617 261 1 0 1 261 120322 120582 8.260000e-131 477.0
35 TraesCS5A01G351700 chr3A 99.609 256 1 0 1 256 738616106 738616361 4.970000e-128 468.0
36 TraesCS5A01G351700 chrUn 99.609 256 1 0 1 256 340645949 340646204 4.970000e-128 468.0
37 TraesCS5A01G351700 chr6A 93.038 158 10 1 260 416 100742082 100742239 2.550000e-56 230.0
38 TraesCS5A01G351700 chr1D 93.333 45 2 1 2568 2612 13354791 13354834 7.620000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G351700 chr5A 554201484 554204773 3289 True 6076.00 6076 100.0000 1 3290 1 chr5A.!!$R2 3289
1 TraesCS5A01G351700 chr5A 554219170 554221266 2096 True 538.00 924 81.3740 981 2786 2 chr5A.!!$R3 1805
2 TraesCS5A01G351700 chr5A 554236663 554238490 1827 True 518.50 896 80.1115 972 2786 2 chr5A.!!$R4 1814
3 TraesCS5A01G351700 chr5D 438589811 438592986 3175 True 1058.75 3347 90.3725 264 3290 4 chr5D.!!$R3 3026
4 TraesCS5A01G351700 chr5D 438658977 438660799 1822 True 527.50 918 80.3870 964 2786 2 chr5D.!!$R4 1822
5 TraesCS5A01G351700 chr5D 438722866 438724711 1845 True 516.00 900 79.9485 964 2786 2 chr5D.!!$R6 1822
6 TraesCS5A01G351700 chr5D 438683898 438689093 5195 True 404.25 931 92.2650 264 2216 4 chr5D.!!$R5 1952
7 TraesCS5A01G351700 chr5B 533494401 533498317 3916 True 1263.00 3186 90.2930 260 3290 3 chr5B.!!$R3 3030
8 TraesCS5A01G351700 chr5B 533566532 533568060 1528 True 867.00 867 77.4440 826 2352 1 chr5B.!!$R2 1526
9 TraesCS5A01G351700 chr5B 533573557 533575323 1766 True 521.50 902 80.4165 1038 2786 2 chr5B.!!$R4 1748


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.035036 TTTGGATGGCGGTCGTGTAA 59.965 50.0 0.00 0.00 0.00 2.41 F
217 218 0.169672 GATGGCCGTATGCATCATGC 59.830 55.0 0.19 1.35 45.29 4.06 F
786 1784 0.246086 CTCAGAGGTGGACAGCTGAC 59.754 60.0 23.35 15.15 39.57 3.51 F
2170 7250 0.240145 TACGTTCGAGGAGTGCACAG 59.760 55.0 21.04 4.83 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 2220 0.472044 ATGCCGGTGTACCATATGCA 59.528 50.000 1.9 0.0 35.14 3.96 R
2147 7227 0.520404 GCACTCCTCGAACGTACTCA 59.480 55.000 0.0 0.0 0.00 3.41 R
2257 7340 1.475280 CCATTCCACACCAAGCATCTG 59.525 52.381 0.0 0.0 0.00 2.90 R
3172 8637 0.026674 CCATTCTGTGTGTATGCGCG 59.973 55.000 0.0 0.0 0.00 6.86 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
21 22 3.496131 CGGTTTGGATGGCGGTCG 61.496 66.667 0.00 0.00 0.00 4.79
22 23 2.359478 GGTTTGGATGGCGGTCGT 60.359 61.111 0.00 0.00 0.00 4.34
23 24 2.686816 GGTTTGGATGGCGGTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
24 25 1.964373 GTTTGGATGGCGGTCGTGT 60.964 57.895 0.00 0.00 0.00 4.49
25 26 0.671163 GTTTGGATGGCGGTCGTGTA 60.671 55.000 0.00 0.00 0.00 2.90
26 27 0.035036 TTTGGATGGCGGTCGTGTAA 59.965 50.000 0.00 0.00 0.00 2.41
27 28 0.671163 TTGGATGGCGGTCGTGTAAC 60.671 55.000 0.00 0.00 0.00 2.50
28 29 1.079681 GGATGGCGGTCGTGTAACA 60.080 57.895 0.00 0.00 35.74 2.41
29 30 1.082117 GGATGGCGGTCGTGTAACAG 61.082 60.000 0.00 0.00 35.74 3.16
30 31 1.079405 ATGGCGGTCGTGTAACAGG 60.079 57.895 0.00 0.00 35.74 4.00
31 32 1.537814 ATGGCGGTCGTGTAACAGGA 61.538 55.000 0.00 0.00 35.74 3.86
32 33 1.217244 GGCGGTCGTGTAACAGGAT 59.783 57.895 0.00 0.00 35.74 3.24
33 34 0.457035 GGCGGTCGTGTAACAGGATA 59.543 55.000 0.00 0.00 35.74 2.59
34 35 1.535437 GGCGGTCGTGTAACAGGATAG 60.535 57.143 0.00 0.00 35.74 2.08
35 36 1.535437 GCGGTCGTGTAACAGGATAGG 60.535 57.143 0.00 0.00 35.74 2.57
36 37 1.535437 CGGTCGTGTAACAGGATAGGC 60.535 57.143 0.00 0.00 35.74 3.93
37 38 1.479323 GGTCGTGTAACAGGATAGGCA 59.521 52.381 0.00 0.00 35.74 4.75
38 39 2.093869 GGTCGTGTAACAGGATAGGCAA 60.094 50.000 0.00 0.00 35.74 4.52
39 40 3.431766 GGTCGTGTAACAGGATAGGCAAT 60.432 47.826 0.00 0.00 35.74 3.56
40 41 4.189231 GTCGTGTAACAGGATAGGCAATT 58.811 43.478 0.00 0.00 35.74 2.32
41 42 5.353938 GTCGTGTAACAGGATAGGCAATTA 58.646 41.667 0.00 0.00 35.74 1.40
42 43 5.462398 GTCGTGTAACAGGATAGGCAATTAG 59.538 44.000 0.00 0.00 35.74 1.73
43 44 5.128171 TCGTGTAACAGGATAGGCAATTAGT 59.872 40.000 0.00 0.00 35.74 2.24
44 45 5.815740 CGTGTAACAGGATAGGCAATTAGTT 59.184 40.000 0.00 0.00 35.74 2.24
45 46 6.315393 CGTGTAACAGGATAGGCAATTAGTTT 59.685 38.462 0.00 0.00 35.74 2.66
46 47 7.493320 CGTGTAACAGGATAGGCAATTAGTTTA 59.507 37.037 0.00 0.00 35.74 2.01
47 48 8.610035 GTGTAACAGGATAGGCAATTAGTTTAC 58.390 37.037 0.00 0.00 36.32 2.01
48 49 7.771826 TGTAACAGGATAGGCAATTAGTTTACC 59.228 37.037 0.00 0.00 0.00 2.85
49 50 6.576778 ACAGGATAGGCAATTAGTTTACCT 57.423 37.500 0.00 0.00 34.42 3.08
50 51 6.357367 ACAGGATAGGCAATTAGTTTACCTG 58.643 40.000 0.00 0.00 44.25 4.00
51 52 6.069615 ACAGGATAGGCAATTAGTTTACCTGT 60.070 38.462 0.00 0.00 45.88 4.00
52 53 6.483640 CAGGATAGGCAATTAGTTTACCTGTC 59.516 42.308 0.00 0.00 37.77 3.51
53 54 6.387220 AGGATAGGCAATTAGTTTACCTGTCT 59.613 38.462 11.02 0.00 38.35 3.41
54 55 7.567622 AGGATAGGCAATTAGTTTACCTGTCTA 59.432 37.037 11.02 0.00 38.35 2.59
55 56 8.376270 GGATAGGCAATTAGTTTACCTGTCTAT 58.624 37.037 11.02 0.00 37.57 1.98
56 57 9.780186 GATAGGCAATTAGTTTACCTGTCTATT 57.220 33.333 0.00 0.00 35.59 1.73
58 59 8.879427 AGGCAATTAGTTTACCTGTCTATTTT 57.121 30.769 0.00 0.00 0.00 1.82
59 60 8.739972 AGGCAATTAGTTTACCTGTCTATTTTG 58.260 33.333 0.00 0.00 0.00 2.44
60 61 7.973944 GGCAATTAGTTTACCTGTCTATTTTGG 59.026 37.037 0.00 0.00 0.00 3.28
61 62 8.736244 GCAATTAGTTTACCTGTCTATTTTGGA 58.264 33.333 0.00 0.00 0.00 3.53
63 64 7.916914 TTAGTTTACCTGTCTATTTTGGAGC 57.083 36.000 0.00 0.00 0.00 4.70
64 65 5.254115 AGTTTACCTGTCTATTTTGGAGCC 58.746 41.667 0.00 0.00 0.00 4.70
65 66 4.919774 TTACCTGTCTATTTTGGAGCCA 57.080 40.909 0.00 0.00 0.00 4.75
66 67 3.806949 ACCTGTCTATTTTGGAGCCAA 57.193 42.857 0.00 0.00 0.00 4.52
67 68 4.112634 ACCTGTCTATTTTGGAGCCAAA 57.887 40.909 10.49 10.49 43.23 3.28
68 69 3.826729 ACCTGTCTATTTTGGAGCCAAAC 59.173 43.478 13.90 4.37 44.39 2.93
69 70 3.119849 CCTGTCTATTTTGGAGCCAAACG 60.120 47.826 13.90 6.51 44.39 3.60
70 71 2.817258 TGTCTATTTTGGAGCCAAACGG 59.183 45.455 13.90 7.67 44.39 4.44
79 80 3.354678 GCCAAACGGCTGTGATGT 58.645 55.556 0.00 0.00 46.85 3.06
80 81 2.550487 GCCAAACGGCTGTGATGTA 58.450 52.632 0.00 0.00 46.85 2.29
81 82 1.094785 GCCAAACGGCTGTGATGTAT 58.905 50.000 0.00 0.00 46.85 2.29
82 83 2.285083 GCCAAACGGCTGTGATGTATA 58.715 47.619 0.00 0.00 46.85 1.47
83 84 2.680841 GCCAAACGGCTGTGATGTATAA 59.319 45.455 0.00 0.00 46.85 0.98
84 85 3.242739 GCCAAACGGCTGTGATGTATAAG 60.243 47.826 0.00 0.00 46.85 1.73
85 86 3.938963 CCAAACGGCTGTGATGTATAAGT 59.061 43.478 0.00 0.00 0.00 2.24
86 87 4.201812 CCAAACGGCTGTGATGTATAAGTG 60.202 45.833 0.00 0.00 0.00 3.16
87 88 2.550978 ACGGCTGTGATGTATAAGTGC 58.449 47.619 0.00 0.00 0.00 4.40
88 89 2.168521 ACGGCTGTGATGTATAAGTGCT 59.831 45.455 0.00 0.00 0.00 4.40
89 90 3.198068 CGGCTGTGATGTATAAGTGCTT 58.802 45.455 0.00 0.00 0.00 3.91
90 91 3.623060 CGGCTGTGATGTATAAGTGCTTT 59.377 43.478 0.00 0.00 0.00 3.51
91 92 4.494690 CGGCTGTGATGTATAAGTGCTTTG 60.495 45.833 0.00 0.00 0.00 2.77
92 93 4.201950 GGCTGTGATGTATAAGTGCTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
93 94 4.731773 GCTGTGATGTATAAGTGCTTTGGC 60.732 45.833 0.00 0.00 39.26 4.52
94 95 4.588899 TGTGATGTATAAGTGCTTTGGCT 58.411 39.130 0.00 0.00 39.59 4.75
95 96 5.739959 TGTGATGTATAAGTGCTTTGGCTA 58.260 37.500 0.00 0.00 39.59 3.93
96 97 5.817296 TGTGATGTATAAGTGCTTTGGCTAG 59.183 40.000 0.00 0.00 39.59 3.42
97 98 4.816385 TGATGTATAAGTGCTTTGGCTAGC 59.184 41.667 6.04 6.04 41.59 3.42
98 99 4.487714 TGTATAAGTGCTTTGGCTAGCT 57.512 40.909 15.72 0.00 41.76 3.32
99 100 4.843728 TGTATAAGTGCTTTGGCTAGCTT 58.156 39.130 15.72 0.47 41.76 3.74
100 101 4.635765 TGTATAAGTGCTTTGGCTAGCTTG 59.364 41.667 15.72 3.73 41.76 4.01
101 102 1.986882 AAGTGCTTTGGCTAGCTTGT 58.013 45.000 15.72 0.00 41.76 3.16
102 103 1.242076 AGTGCTTTGGCTAGCTTGTG 58.758 50.000 15.72 4.44 41.76 3.33
103 104 0.954452 GTGCTTTGGCTAGCTTGTGT 59.046 50.000 15.72 0.00 41.76 3.72
104 105 2.151202 GTGCTTTGGCTAGCTTGTGTA 58.849 47.619 15.72 0.04 41.76 2.90
105 106 2.749621 GTGCTTTGGCTAGCTTGTGTAT 59.250 45.455 15.72 0.00 41.76 2.29
106 107 3.009723 TGCTTTGGCTAGCTTGTGTATC 58.990 45.455 15.72 0.00 41.76 2.24
107 108 3.274288 GCTTTGGCTAGCTTGTGTATCT 58.726 45.455 15.72 0.00 38.15 1.98
108 109 4.081142 TGCTTTGGCTAGCTTGTGTATCTA 60.081 41.667 15.72 0.00 41.76 1.98
109 110 4.509600 GCTTTGGCTAGCTTGTGTATCTAG 59.490 45.833 15.72 0.00 38.15 2.43
113 114 4.329462 GCTAGCTTGTGTATCTAGCCTT 57.671 45.455 7.70 0.00 45.70 4.35
114 115 4.303282 GCTAGCTTGTGTATCTAGCCTTC 58.697 47.826 7.70 0.00 45.70 3.46
115 116 3.444703 AGCTTGTGTATCTAGCCTTCG 57.555 47.619 0.00 0.00 43.81 3.79
116 117 2.101582 AGCTTGTGTATCTAGCCTTCGG 59.898 50.000 0.00 0.00 43.81 4.30
117 118 2.803492 GCTTGTGTATCTAGCCTTCGGG 60.803 54.545 0.00 0.00 38.58 5.14
127 128 3.059982 CCTTCGGGCTCTGTGTGA 58.940 61.111 0.00 0.00 0.00 3.58
128 129 1.079543 CCTTCGGGCTCTGTGTGAG 60.080 63.158 0.00 0.00 45.33 3.51
139 140 4.999751 CTCTGTGTGAGCCTTTTCTTAC 57.000 45.455 0.00 0.00 35.84 2.34
140 141 4.636249 CTCTGTGTGAGCCTTTTCTTACT 58.364 43.478 0.00 0.00 35.84 2.24
141 142 5.036117 TCTGTGTGAGCCTTTTCTTACTT 57.964 39.130 0.00 0.00 0.00 2.24
142 143 5.437060 TCTGTGTGAGCCTTTTCTTACTTT 58.563 37.500 0.00 0.00 0.00 2.66
143 144 5.885912 TCTGTGTGAGCCTTTTCTTACTTTT 59.114 36.000 0.00 0.00 0.00 2.27
144 145 6.038271 TCTGTGTGAGCCTTTTCTTACTTTTC 59.962 38.462 0.00 0.00 0.00 2.29
145 146 5.885912 TGTGTGAGCCTTTTCTTACTTTTCT 59.114 36.000 0.00 0.00 0.00 2.52
146 147 6.377146 TGTGTGAGCCTTTTCTTACTTTTCTT 59.623 34.615 0.00 0.00 0.00 2.52
147 148 6.693113 GTGTGAGCCTTTTCTTACTTTTCTTG 59.307 38.462 0.00 0.00 0.00 3.02
148 149 6.377146 TGTGAGCCTTTTCTTACTTTTCTTGT 59.623 34.615 0.00 0.00 0.00 3.16
149 150 7.093945 TGTGAGCCTTTTCTTACTTTTCTTGTT 60.094 33.333 0.00 0.00 0.00 2.83
150 151 7.220875 GTGAGCCTTTTCTTACTTTTCTTGTTG 59.779 37.037 0.00 0.00 0.00 3.33
151 152 7.122055 TGAGCCTTTTCTTACTTTTCTTGTTGA 59.878 33.333 0.00 0.00 0.00 3.18
152 153 7.258441 AGCCTTTTCTTACTTTTCTTGTTGAC 58.742 34.615 0.00 0.00 0.00 3.18
153 154 7.033185 GCCTTTTCTTACTTTTCTTGTTGACA 58.967 34.615 0.00 0.00 0.00 3.58
154 155 7.544217 GCCTTTTCTTACTTTTCTTGTTGACAA 59.456 33.333 0.00 0.00 0.00 3.18
155 156 8.860128 CCTTTTCTTACTTTTCTTGTTGACAAC 58.140 33.333 11.54 11.54 0.00 3.32
156 157 8.751302 TTTTCTTACTTTTCTTGTTGACAACC 57.249 30.769 15.59 0.00 0.00 3.77
157 158 7.696992 TTCTTACTTTTCTTGTTGACAACCT 57.303 32.000 15.59 0.00 0.00 3.50
158 159 7.696992 TCTTACTTTTCTTGTTGACAACCTT 57.303 32.000 15.59 0.00 0.00 3.50
159 160 7.535139 TCTTACTTTTCTTGTTGACAACCTTG 58.465 34.615 15.59 6.01 0.00 3.61
160 161 5.975693 ACTTTTCTTGTTGACAACCTTGA 57.024 34.783 15.59 8.12 0.00 3.02
161 162 5.954335 ACTTTTCTTGTTGACAACCTTGAG 58.046 37.500 15.59 8.41 0.00 3.02
162 163 5.710099 ACTTTTCTTGTTGACAACCTTGAGA 59.290 36.000 15.59 10.37 0.00 3.27
163 164 5.560966 TTTCTTGTTGACAACCTTGAGAC 57.439 39.130 15.59 0.00 0.00 3.36
164 165 4.487714 TCTTGTTGACAACCTTGAGACT 57.512 40.909 15.59 0.00 0.00 3.24
165 166 4.843728 TCTTGTTGACAACCTTGAGACTT 58.156 39.130 15.59 0.00 0.00 3.01
166 167 4.635765 TCTTGTTGACAACCTTGAGACTTG 59.364 41.667 15.59 0.00 0.00 3.16
167 168 3.278574 TGTTGACAACCTTGAGACTTGG 58.721 45.455 15.59 0.00 0.00 3.61
168 169 3.054728 TGTTGACAACCTTGAGACTTGGA 60.055 43.478 15.59 0.00 0.00 3.53
169 170 3.475566 TGACAACCTTGAGACTTGGAG 57.524 47.619 0.00 0.00 0.00 3.86
170 171 3.038280 TGACAACCTTGAGACTTGGAGA 58.962 45.455 0.00 0.00 0.00 3.71
171 172 3.181465 TGACAACCTTGAGACTTGGAGAC 60.181 47.826 0.00 0.00 0.00 3.36
172 173 3.041946 ACAACCTTGAGACTTGGAGACT 58.958 45.455 0.00 0.00 0.00 3.24
173 174 3.456277 ACAACCTTGAGACTTGGAGACTT 59.544 43.478 0.00 0.00 0.00 3.01
174 175 4.080299 ACAACCTTGAGACTTGGAGACTTT 60.080 41.667 0.00 0.00 0.00 2.66
175 176 4.078639 ACCTTGAGACTTGGAGACTTTG 57.921 45.455 0.00 0.00 0.00 2.77
176 177 3.456277 ACCTTGAGACTTGGAGACTTTGT 59.544 43.478 0.00 0.00 0.00 2.83
177 178 3.812053 CCTTGAGACTTGGAGACTTTGTG 59.188 47.826 0.00 0.00 0.00 3.33
178 179 3.475566 TGAGACTTGGAGACTTTGTGG 57.524 47.619 0.00 0.00 0.00 4.17
179 180 3.038280 TGAGACTTGGAGACTTTGTGGA 58.962 45.455 0.00 0.00 0.00 4.02
180 181 3.181465 TGAGACTTGGAGACTTTGTGGAC 60.181 47.826 0.00 0.00 0.00 4.02
181 182 3.041946 AGACTTGGAGACTTTGTGGACT 58.958 45.455 0.00 0.00 0.00 3.85
182 183 4.223953 AGACTTGGAGACTTTGTGGACTA 58.776 43.478 0.00 0.00 0.00 2.59
183 184 4.841246 AGACTTGGAGACTTTGTGGACTAT 59.159 41.667 0.00 0.00 0.00 2.12
184 185 5.308237 AGACTTGGAGACTTTGTGGACTATT 59.692 40.000 0.00 0.00 0.00 1.73
185 186 5.941788 ACTTGGAGACTTTGTGGACTATTT 58.058 37.500 0.00 0.00 0.00 1.40
186 187 6.365520 ACTTGGAGACTTTGTGGACTATTTT 58.634 36.000 0.00 0.00 0.00 1.82
187 188 7.514721 ACTTGGAGACTTTGTGGACTATTTTA 58.485 34.615 0.00 0.00 0.00 1.52
188 189 8.164070 ACTTGGAGACTTTGTGGACTATTTTAT 58.836 33.333 0.00 0.00 0.00 1.40
189 190 7.921786 TGGAGACTTTGTGGACTATTTTATG 57.078 36.000 0.00 0.00 0.00 1.90
190 191 6.374333 TGGAGACTTTGTGGACTATTTTATGC 59.626 38.462 0.00 0.00 0.00 3.14
191 192 6.599638 GGAGACTTTGTGGACTATTTTATGCT 59.400 38.462 0.00 0.00 0.00 3.79
192 193 7.121315 GGAGACTTTGTGGACTATTTTATGCTT 59.879 37.037 0.00 0.00 0.00 3.91
193 194 9.162764 GAGACTTTGTGGACTATTTTATGCTTA 57.837 33.333 0.00 0.00 0.00 3.09
194 195 9.515226 AGACTTTGTGGACTATTTTATGCTTAA 57.485 29.630 0.00 0.00 0.00 1.85
205 206 8.730680 ACTATTTTATGCTTAATAAGATGGCCG 58.269 33.333 3.88 0.00 30.98 6.13
206 207 6.952773 TTTTATGCTTAATAAGATGGCCGT 57.047 33.333 0.00 0.00 32.30 5.68
207 208 8.630054 ATTTTATGCTTAATAAGATGGCCGTA 57.370 30.769 3.88 0.00 32.30 4.02
208 209 8.630054 TTTTATGCTTAATAAGATGGCCGTAT 57.370 30.769 3.88 0.00 32.30 3.06
209 210 7.609760 TTATGCTTAATAAGATGGCCGTATG 57.390 36.000 3.88 0.00 0.00 2.39
210 211 3.751175 TGCTTAATAAGATGGCCGTATGC 59.249 43.478 3.88 0.00 40.16 3.14
211 212 3.751175 GCTTAATAAGATGGCCGTATGCA 59.249 43.478 3.88 0.00 43.89 3.96
212 213 4.396166 GCTTAATAAGATGGCCGTATGCAT 59.604 41.667 3.79 3.79 43.89 3.96
213 214 5.447818 GCTTAATAAGATGGCCGTATGCATC 60.448 44.000 0.19 0.00 43.89 3.91
214 215 3.701205 ATAAGATGGCCGTATGCATCA 57.299 42.857 0.19 0.00 43.89 3.07
215 216 2.574006 AAGATGGCCGTATGCATCAT 57.426 45.000 0.19 0.00 43.89 2.45
216 217 1.817357 AGATGGCCGTATGCATCATG 58.183 50.000 0.19 0.00 43.89 3.07
217 218 0.169672 GATGGCCGTATGCATCATGC 59.830 55.000 0.19 1.35 45.29 4.06
218 219 0.251033 ATGGCCGTATGCATCATGCT 60.251 50.000 11.84 0.00 45.31 3.79
219 220 1.167781 TGGCCGTATGCATCATGCTG 61.168 55.000 11.84 0.00 45.31 4.41
220 221 0.886043 GGCCGTATGCATCATGCTGA 60.886 55.000 11.84 0.00 45.31 4.26
221 222 1.162698 GCCGTATGCATCATGCTGAT 58.837 50.000 11.84 0.00 45.31 2.90
232 233 4.478371 TGCTGATGCAGAGGCCGG 62.478 66.667 0.00 0.00 45.31 6.13
234 235 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
236 237 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
237 238 3.764160 GATGCAGAGGCCGGGGAAG 62.764 68.421 2.18 0.00 40.13 3.46
404 406 1.392407 ACCCAGATTTGAATCCCCCA 58.608 50.000 0.27 0.00 36.04 4.96
455 1393 2.173356 TGGAAGAGGAATGAATGCGGAT 59.827 45.455 0.00 0.00 0.00 4.18
511 1449 3.186702 TCAGACATTCCACAACGTTCA 57.813 42.857 0.00 0.00 0.00 3.18
545 1483 4.527509 ATGTTTCACGACTGATCTCACT 57.472 40.909 0.00 0.00 0.00 3.41
558 1496 6.571605 ACTGATCTCACTGTGATAACATCTG 58.428 40.000 11.45 14.58 0.00 2.90
675 1673 3.309954 GTGAAGGTGACTGTTGAAGTGTC 59.690 47.826 0.00 0.00 42.68 3.67
681 1679 3.361053 GTGACTGTTGAAGTGTCGATACG 59.639 47.826 6.66 0.00 40.07 3.06
786 1784 0.246086 CTCAGAGGTGGACAGCTGAC 59.754 60.000 23.35 15.15 39.57 3.51
812 1810 4.594970 TCAACTCTTGACCACTTGGAAAA 58.405 39.130 1.14 0.00 38.94 2.29
849 1847 2.095567 CCAGAATTCCAAGAACACTGCG 60.096 50.000 0.65 0.00 0.00 5.18
853 1851 4.452455 AGAATTCCAAGAACACTGCGTTAG 59.548 41.667 0.65 0.00 38.19 2.34
855 1853 3.462483 TCCAAGAACACTGCGTTAGAA 57.538 42.857 0.00 0.00 38.19 2.10
865 1863 5.237815 ACACTGCGTTAGAAAATCATCTGA 58.762 37.500 0.00 0.00 0.00 3.27
886 1884 0.996462 TCCGCGATCAAACATTCGTC 59.004 50.000 8.23 0.00 37.66 4.20
1020 2042 2.586792 GATTGGCCGGCTCTCACT 59.413 61.111 28.56 10.28 0.00 3.41
1021 2043 1.522580 GATTGGCCGGCTCTCACTC 60.523 63.158 28.56 15.54 0.00 3.51
1022 2044 1.965754 GATTGGCCGGCTCTCACTCT 61.966 60.000 28.56 3.12 0.00 3.24
1023 2045 1.965754 ATTGGCCGGCTCTCACTCTC 61.966 60.000 28.56 6.48 0.00 3.20
1024 2046 3.071206 GGCCGGCTCTCACTCTCA 61.071 66.667 28.56 0.00 0.00 3.27
1025 2047 2.183046 GCCGGCTCTCACTCTCAC 59.817 66.667 22.15 0.00 0.00 3.51
1068 2093 4.607239 TCCTTATCTTCCTACCGTTGAGT 58.393 43.478 0.00 0.00 0.00 3.41
1195 2220 0.260816 TCCGACCAGCCTGTACCTAT 59.739 55.000 0.00 0.00 0.00 2.57
1288 2313 0.393077 CACTTCCTCTCCACCAACGT 59.607 55.000 0.00 0.00 0.00 3.99
1322 2347 6.183361 ACCAACAACTCTAATCTGGTTCTCTT 60.183 38.462 0.00 0.00 33.37 2.85
1342 2367 1.152963 GATGGTAATGGTGGCCGCT 60.153 57.895 17.49 0.00 0.00 5.52
1469 2494 0.957395 ATGTTGTGGCAGAGCTTCGG 60.957 55.000 0.00 0.00 0.00 4.30
1515 2540 3.876914 CTGGCATGAAGCTACGGATAAAA 59.123 43.478 0.00 0.00 44.79 1.52
1617 2647 1.006758 AGTGACCCGAACAGATCCCTA 59.993 52.381 0.00 0.00 0.00 3.53
2044 7121 1.028868 GTGGACTGCAGGCAGATTCC 61.029 60.000 26.63 22.24 46.30 3.01
2088 7168 4.794439 CCGCGATGCAGTGACGGA 62.794 66.667 8.23 0.00 46.71 4.69
2170 7250 0.240145 TACGTTCGAGGAGTGCACAG 59.760 55.000 21.04 4.83 0.00 3.66
2171 7251 2.375766 CGTTCGAGGAGTGCACAGC 61.376 63.158 21.04 10.48 0.00 4.40
2172 7252 1.300931 GTTCGAGGAGTGCACAGCA 60.301 57.895 21.04 0.00 35.60 4.41
2173 7253 1.005748 TTCGAGGAGTGCACAGCAG 60.006 57.895 21.04 6.32 40.08 4.24
2174 7254 1.463553 TTCGAGGAGTGCACAGCAGA 61.464 55.000 21.04 8.70 40.08 4.26
2175 7255 1.445754 CGAGGAGTGCACAGCAGAG 60.446 63.158 21.04 1.61 40.08 3.35
2176 7256 1.670590 GAGGAGTGCACAGCAGAGT 59.329 57.895 21.04 0.00 40.08 3.24
2257 7340 1.884444 GTCTGGAGGAGACGTGACC 59.116 63.158 0.00 0.00 41.91 4.02
2458 7901 5.694231 TCATCCATTTTTGTGACAGTCAG 57.306 39.130 2.53 0.00 0.00 3.51
2459 7902 5.132502 TCATCCATTTTTGTGACAGTCAGT 58.867 37.500 2.53 0.00 0.00 3.41
2460 7903 5.593909 TCATCCATTTTTGTGACAGTCAGTT 59.406 36.000 2.53 0.00 0.00 3.16
2461 7904 6.770303 TCATCCATTTTTGTGACAGTCAGTTA 59.230 34.615 2.53 0.00 0.00 2.24
2532 7980 9.793259 AGTTCCACAATCTGATCTTTAAGTTAA 57.207 29.630 0.00 0.00 0.00 2.01
2585 8044 4.178545 TGCTCTCAAAATAGGCTTTTGC 57.821 40.909 6.76 0.00 46.64 3.68
2681 8140 7.556275 ACAAAGAGAAAAACAGTGAGGATTGTA 59.444 33.333 0.00 0.00 0.00 2.41
2688 8147 4.032960 ACAGTGAGGATTGTATTGCCAA 57.967 40.909 0.00 0.00 0.00 4.52
2721 8180 2.094494 AGTGTTCTGGTACTCATCTGCG 60.094 50.000 0.00 0.00 0.00 5.18
2777 8236 4.281898 TCCTTGACCCTGCTAAGTAAAC 57.718 45.455 0.00 0.00 0.00 2.01
2818 8280 6.469915 GCGGGGAAAGTAAAACGTTATATTTG 59.530 38.462 0.00 0.00 0.00 2.32
2823 8285 9.333497 GGAAAGTAAAACGTTATATTTGACCAC 57.667 33.333 0.00 0.00 0.00 4.16
2824 8286 9.333497 GAAAGTAAAACGTTATATTTGACCACC 57.667 33.333 0.00 0.00 0.00 4.61
2825 8287 8.625786 AAGTAAAACGTTATATTTGACCACCT 57.374 30.769 0.00 0.00 0.00 4.00
2826 8288 8.625786 AGTAAAACGTTATATTTGACCACCTT 57.374 30.769 0.00 0.00 0.00 3.50
2827 8289 9.723601 AGTAAAACGTTATATTTGACCACCTTA 57.276 29.630 0.00 0.00 0.00 2.69
2841 8303 4.138487 CCACCTTATGGGAGTGTAAGTC 57.862 50.000 0.00 0.00 45.95 3.01
2842 8304 3.775316 CCACCTTATGGGAGTGTAAGTCT 59.225 47.826 0.00 0.00 45.95 3.24
2843 8305 4.141914 CCACCTTATGGGAGTGTAAGTCTC 60.142 50.000 0.00 0.00 45.95 3.36
2847 8309 2.391926 TGGGAGTGTAAGTCTCACCA 57.608 50.000 0.00 0.00 43.19 4.17
2848 8310 1.968493 TGGGAGTGTAAGTCTCACCAC 59.032 52.381 0.00 0.00 43.19 4.16
2849 8311 1.275573 GGGAGTGTAAGTCTCACCACC 59.724 57.143 0.00 0.00 36.53 4.61
2850 8312 1.968493 GGAGTGTAAGTCTCACCACCA 59.032 52.381 0.00 0.00 36.25 4.17
2851 8313 2.367567 GGAGTGTAAGTCTCACCACCAA 59.632 50.000 0.00 0.00 36.25 3.67
2852 8314 3.181458 GGAGTGTAAGTCTCACCACCAAA 60.181 47.826 0.00 0.00 36.25 3.28
2853 8315 4.448210 GAGTGTAAGTCTCACCACCAAAA 58.552 43.478 0.00 0.00 36.58 2.44
2854 8316 4.196971 AGTGTAAGTCTCACCACCAAAAC 58.803 43.478 0.00 0.00 36.58 2.43
2855 8317 4.080526 AGTGTAAGTCTCACCACCAAAACT 60.081 41.667 0.00 0.00 36.58 2.66
2856 8318 4.638865 GTGTAAGTCTCACCACCAAAACTT 59.361 41.667 0.00 0.00 0.00 2.66
2857 8319 4.638421 TGTAAGTCTCACCACCAAAACTTG 59.362 41.667 0.00 0.00 0.00 3.16
2870 8332 4.247267 CAAAACTTGGACTGCATCATGT 57.753 40.909 0.00 0.00 0.00 3.21
2871 8333 5.375417 CAAAACTTGGACTGCATCATGTA 57.625 39.130 0.00 0.00 0.00 2.29
2872 8334 5.156355 CAAAACTTGGACTGCATCATGTAC 58.844 41.667 0.00 0.00 0.00 2.90
2873 8335 3.988976 ACTTGGACTGCATCATGTACT 57.011 42.857 0.00 0.00 0.00 2.73
2874 8336 5.420725 AACTTGGACTGCATCATGTACTA 57.579 39.130 0.00 0.00 0.00 1.82
2875 8337 4.759782 ACTTGGACTGCATCATGTACTAC 58.240 43.478 0.00 0.00 0.00 2.73
2876 8338 3.819564 TGGACTGCATCATGTACTACC 57.180 47.619 0.00 0.00 0.00 3.18
2877 8339 3.103742 TGGACTGCATCATGTACTACCA 58.896 45.455 0.00 0.00 0.00 3.25
2878 8340 3.711190 TGGACTGCATCATGTACTACCAT 59.289 43.478 0.00 0.00 0.00 3.55
2879 8341 4.898861 TGGACTGCATCATGTACTACCATA 59.101 41.667 0.00 0.00 0.00 2.74
2880 8342 5.365314 TGGACTGCATCATGTACTACCATAA 59.635 40.000 0.00 0.00 0.00 1.90
2881 8343 6.043127 TGGACTGCATCATGTACTACCATAAT 59.957 38.462 0.00 0.00 0.00 1.28
2882 8344 7.234577 TGGACTGCATCATGTACTACCATAATA 59.765 37.037 0.00 0.00 0.00 0.98
2883 8345 8.094548 GGACTGCATCATGTACTACCATAATAA 58.905 37.037 0.00 0.00 0.00 1.40
2884 8346 9.658799 GACTGCATCATGTACTACCATAATAAT 57.341 33.333 0.00 0.00 0.00 1.28
2900 8362 8.720537 ACCATAATAATAATATACCCTTCCCCG 58.279 37.037 0.00 0.00 0.00 5.73
2901 8363 7.664318 CCATAATAATAATATACCCTTCCCCGC 59.336 40.741 0.00 0.00 0.00 6.13
2902 8364 6.645884 AATAATAATATACCCTTCCCCGCA 57.354 37.500 0.00 0.00 0.00 5.69
2903 8365 6.645884 ATAATAATATACCCTTCCCCGCAA 57.354 37.500 0.00 0.00 0.00 4.85
2904 8366 5.327737 AATAATATACCCTTCCCCGCAAA 57.672 39.130 0.00 0.00 0.00 3.68
2905 8367 3.673543 AATATACCCTTCCCCGCAAAA 57.326 42.857 0.00 0.00 0.00 2.44
2906 8368 3.673543 ATATACCCTTCCCCGCAAAAA 57.326 42.857 0.00 0.00 0.00 1.94
2907 8369 2.543037 ATACCCTTCCCCGCAAAAAT 57.457 45.000 0.00 0.00 0.00 1.82
2908 8370 3.673543 ATACCCTTCCCCGCAAAAATA 57.326 42.857 0.00 0.00 0.00 1.40
2909 8371 2.312424 ACCCTTCCCCGCAAAAATAA 57.688 45.000 0.00 0.00 0.00 1.40
2910 8372 2.827755 ACCCTTCCCCGCAAAAATAAT 58.172 42.857 0.00 0.00 0.00 1.28
2911 8373 3.983821 ACCCTTCCCCGCAAAAATAATA 58.016 40.909 0.00 0.00 0.00 0.98
2912 8374 4.354662 ACCCTTCCCCGCAAAAATAATAA 58.645 39.130 0.00 0.00 0.00 1.40
2913 8375 4.966168 ACCCTTCCCCGCAAAAATAATAAT 59.034 37.500 0.00 0.00 0.00 1.28
2914 8376 6.137559 ACCCTTCCCCGCAAAAATAATAATA 58.862 36.000 0.00 0.00 0.00 0.98
2915 8377 6.612049 ACCCTTCCCCGCAAAAATAATAATAA 59.388 34.615 0.00 0.00 0.00 1.40
2916 8378 7.291416 ACCCTTCCCCGCAAAAATAATAATAAT 59.709 33.333 0.00 0.00 0.00 1.28
2917 8379 8.808092 CCCTTCCCCGCAAAAATAATAATAATA 58.192 33.333 0.00 0.00 0.00 0.98
2960 8422 7.698163 ACAGAATCTTATAAATCCCCTGAGT 57.302 36.000 0.00 0.00 0.00 3.41
2961 8423 8.798975 ACAGAATCTTATAAATCCCCTGAGTA 57.201 34.615 0.00 0.00 0.00 2.59
2962 8424 9.398921 ACAGAATCTTATAAATCCCCTGAGTAT 57.601 33.333 0.00 0.00 0.00 2.12
2974 8436 7.850935 ATCCCCTGAGTATATAAAACGAGAA 57.149 36.000 0.00 0.00 0.00 2.87
2978 8440 7.767198 CCCCTGAGTATATAAAACGAGAACAAA 59.233 37.037 0.00 0.00 0.00 2.83
2994 8456 7.064728 ACGAGAACAAATAACTTCTTAGATGGC 59.935 37.037 0.00 0.00 0.00 4.40
3015 8477 9.930693 GATGGCTTATAGCATAGTTTAACTACT 57.069 33.333 7.00 3.99 44.75 2.57
3034 8496 3.538634 CTCTGAGGAGTGATGCAATGA 57.461 47.619 0.00 0.00 35.03 2.57
3036 8498 5.211174 CTCTGAGGAGTGATGCAATGATA 57.789 43.478 0.00 0.00 35.03 2.15
3043 8505 4.085055 GGAGTGATGCAATGATAACGTACG 60.085 45.833 15.01 15.01 0.00 3.67
3049 8514 6.801862 TGATGCAATGATAACGTACGATCTAG 59.198 38.462 24.41 10.09 0.00 2.43
3070 8535 7.363031 TCTAGTACCAAATAAGATGGAGTCCT 58.637 38.462 11.33 0.00 40.56 3.85
3079 8544 7.921041 AATAAGATGGAGTCCTCATGTTAGA 57.079 36.000 11.33 0.00 35.05 2.10
3091 8556 6.535508 GTCCTCATGTTAGAGAAACCACATAC 59.464 42.308 0.00 0.00 37.87 2.39
3094 8559 7.278868 CCTCATGTTAGAGAAACCACATACTTC 59.721 40.741 0.00 0.00 37.87 3.01
3103 8568 1.115467 CCACATACTTCTCTCGCCCT 58.885 55.000 0.00 0.00 0.00 5.19
3107 8572 4.302455 CACATACTTCTCTCGCCCTATTG 58.698 47.826 0.00 0.00 0.00 1.90
3114 8579 0.750249 TCTCGCCCTATTGCAATCGA 59.250 50.000 16.86 16.92 0.00 3.59
3127 8592 1.254570 GCAATCGATCGTTCGTACACC 59.745 52.381 15.94 0.00 45.65 4.16
3135 8600 1.680105 CGTTCGTACACCATGTCCGC 61.680 60.000 0.00 0.00 29.48 5.54
3140 8605 0.460284 GTACACCATGTCCGCCAGAG 60.460 60.000 0.00 0.00 0.00 3.35
3150 8615 4.711949 CGCCAGAGCCCTTGCACT 62.712 66.667 0.00 0.00 39.12 4.40
3151 8616 2.282745 GCCAGAGCCCTTGCACTT 60.283 61.111 0.00 0.00 36.17 3.16
3152 8617 1.905354 GCCAGAGCCCTTGCACTTT 60.905 57.895 0.00 0.00 36.17 2.66
3153 8618 1.962144 CCAGAGCCCTTGCACTTTG 59.038 57.895 0.00 0.00 36.17 2.77
3154 8619 0.825010 CCAGAGCCCTTGCACTTTGT 60.825 55.000 0.00 0.00 36.17 2.83
3156 8621 0.106519 AGAGCCCTTGCACTTTGTGT 60.107 50.000 0.00 0.00 41.13 3.72
3166 8631 2.987413 CACTTTGTGTGTGTGTGTGT 57.013 45.000 0.00 0.00 41.53 3.72
3167 8632 2.583739 CACTTTGTGTGTGTGTGTGTG 58.416 47.619 0.00 0.00 41.53 3.82
3168 8633 1.068610 ACTTTGTGTGTGTGTGTGTGC 60.069 47.619 0.00 0.00 0.00 4.57
3169 8634 0.110010 TTTGTGTGTGTGTGTGTGCG 60.110 50.000 0.00 0.00 0.00 5.34
3170 8635 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
3171 8636 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
3222 8687 1.985159 TCATAGGGGTTGCTGTCTTGT 59.015 47.619 0.00 0.00 0.00 3.16
3224 8689 3.157087 CATAGGGGTTGCTGTCTTGTTT 58.843 45.455 0.00 0.00 0.00 2.83
3239 8704 7.487189 GCTGTCTTGTTTCTTTCCATATCATTG 59.513 37.037 0.00 0.00 0.00 2.82
3261 8726 1.323412 ATCGCTGCTCGGAGATACTT 58.677 50.000 9.69 0.00 39.05 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.814268 CGCCATCCAAACCGGCTG 61.814 66.667 0.00 0.00 43.95 4.85
3 4 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
4 5 3.496131 CGACCGCCATCCAAACCG 61.496 66.667 0.00 0.00 0.00 4.44
5 6 2.359478 ACGACCGCCATCCAAACC 60.359 61.111 0.00 0.00 0.00 3.27
6 7 0.671163 TACACGACCGCCATCCAAAC 60.671 55.000 0.00 0.00 0.00 2.93
7 8 0.035036 TTACACGACCGCCATCCAAA 59.965 50.000 0.00 0.00 0.00 3.28
8 9 0.671163 GTTACACGACCGCCATCCAA 60.671 55.000 0.00 0.00 0.00 3.53
9 10 1.079681 GTTACACGACCGCCATCCA 60.080 57.895 0.00 0.00 0.00 3.41
10 11 1.079681 TGTTACACGACCGCCATCC 60.080 57.895 0.00 0.00 0.00 3.51
11 12 1.082117 CCTGTTACACGACCGCCATC 61.082 60.000 0.00 0.00 0.00 3.51
12 13 1.079405 CCTGTTACACGACCGCCAT 60.079 57.895 0.00 0.00 0.00 4.40
13 14 1.537814 ATCCTGTTACACGACCGCCA 61.538 55.000 0.00 0.00 0.00 5.69
14 15 0.457035 TATCCTGTTACACGACCGCC 59.543 55.000 0.00 0.00 0.00 6.13
15 16 1.535437 CCTATCCTGTTACACGACCGC 60.535 57.143 0.00 0.00 0.00 5.68
16 17 1.535437 GCCTATCCTGTTACACGACCG 60.535 57.143 0.00 0.00 0.00 4.79
17 18 1.479323 TGCCTATCCTGTTACACGACC 59.521 52.381 0.00 0.00 0.00 4.79
18 19 2.953466 TGCCTATCCTGTTACACGAC 57.047 50.000 0.00 0.00 0.00 4.34
19 20 4.481368 AATTGCCTATCCTGTTACACGA 57.519 40.909 0.00 0.00 0.00 4.35
20 21 5.357257 ACTAATTGCCTATCCTGTTACACG 58.643 41.667 0.00 0.00 0.00 4.49
21 22 7.625828 AAACTAATTGCCTATCCTGTTACAC 57.374 36.000 0.00 0.00 0.00 2.90
22 23 7.771826 GGTAAACTAATTGCCTATCCTGTTACA 59.228 37.037 0.00 0.00 40.38 2.41
23 24 8.151141 GGTAAACTAATTGCCTATCCTGTTAC 57.849 38.462 0.00 0.00 40.38 2.50
34 35 7.973944 CCAAAATAGACAGGTAAACTAATTGCC 59.026 37.037 0.00 0.00 43.60 4.52
35 36 8.736244 TCCAAAATAGACAGGTAAACTAATTGC 58.264 33.333 0.00 0.00 0.00 3.56
37 38 8.957466 GCTCCAAAATAGACAGGTAAACTAATT 58.043 33.333 0.00 0.00 0.00 1.40
38 39 7.556635 GGCTCCAAAATAGACAGGTAAACTAAT 59.443 37.037 0.00 0.00 0.00 1.73
39 40 6.882678 GGCTCCAAAATAGACAGGTAAACTAA 59.117 38.462 0.00 0.00 0.00 2.24
40 41 6.013206 TGGCTCCAAAATAGACAGGTAAACTA 60.013 38.462 0.00 0.00 0.00 2.24
41 42 5.222048 TGGCTCCAAAATAGACAGGTAAACT 60.222 40.000 0.00 0.00 0.00 2.66
42 43 5.007682 TGGCTCCAAAATAGACAGGTAAAC 58.992 41.667 0.00 0.00 0.00 2.01
43 44 5.249780 TGGCTCCAAAATAGACAGGTAAA 57.750 39.130 0.00 0.00 0.00 2.01
44 45 4.919774 TGGCTCCAAAATAGACAGGTAA 57.080 40.909 0.00 0.00 0.00 2.85
45 46 4.919774 TTGGCTCCAAAATAGACAGGTA 57.080 40.909 0.00 0.00 32.36 3.08
46 47 3.806949 TTGGCTCCAAAATAGACAGGT 57.193 42.857 0.00 0.00 32.36 4.00
47 48 3.119849 CGTTTGGCTCCAAAATAGACAGG 60.120 47.826 14.97 0.00 45.86 4.00
48 49 3.119849 CCGTTTGGCTCCAAAATAGACAG 60.120 47.826 14.97 1.92 45.86 3.51
49 50 2.817258 CCGTTTGGCTCCAAAATAGACA 59.183 45.455 14.97 0.00 45.86 3.41
50 51 3.487563 CCGTTTGGCTCCAAAATAGAC 57.512 47.619 14.97 3.42 45.86 2.59
63 64 3.938963 ACTTATACATCACAGCCGTTTGG 59.061 43.478 0.00 0.00 38.77 3.28
64 65 4.727734 GCACTTATACATCACAGCCGTTTG 60.728 45.833 0.00 0.00 0.00 2.93
65 66 3.374058 GCACTTATACATCACAGCCGTTT 59.626 43.478 0.00 0.00 0.00 3.60
66 67 2.936498 GCACTTATACATCACAGCCGTT 59.064 45.455 0.00 0.00 0.00 4.44
67 68 2.168521 AGCACTTATACATCACAGCCGT 59.831 45.455 0.00 0.00 0.00 5.68
68 69 2.826428 AGCACTTATACATCACAGCCG 58.174 47.619 0.00 0.00 0.00 5.52
69 70 4.201950 CCAAAGCACTTATACATCACAGCC 60.202 45.833 0.00 0.00 0.00 4.85
70 71 4.731773 GCCAAAGCACTTATACATCACAGC 60.732 45.833 0.00 0.00 39.53 4.40
71 72 4.637534 AGCCAAAGCACTTATACATCACAG 59.362 41.667 0.00 0.00 43.56 3.66
72 73 4.588899 AGCCAAAGCACTTATACATCACA 58.411 39.130 0.00 0.00 43.56 3.58
73 74 5.277538 GCTAGCCAAAGCACTTATACATCAC 60.278 44.000 2.29 0.00 43.56 3.06
74 75 4.816385 GCTAGCCAAAGCACTTATACATCA 59.184 41.667 2.29 0.00 43.56 3.07
75 76 5.059833 AGCTAGCCAAAGCACTTATACATC 58.940 41.667 12.13 0.00 45.30 3.06
76 77 5.041191 AGCTAGCCAAAGCACTTATACAT 57.959 39.130 12.13 0.00 45.30 2.29
77 78 4.487714 AGCTAGCCAAAGCACTTATACA 57.512 40.909 12.13 0.00 45.30 2.29
78 79 4.636206 ACAAGCTAGCCAAAGCACTTATAC 59.364 41.667 12.13 0.00 45.30 1.47
79 80 4.635765 CACAAGCTAGCCAAAGCACTTATA 59.364 41.667 12.13 0.00 45.30 0.98
80 81 3.441572 CACAAGCTAGCCAAAGCACTTAT 59.558 43.478 12.13 0.00 45.30 1.73
81 82 2.813754 CACAAGCTAGCCAAAGCACTTA 59.186 45.455 12.13 0.00 45.30 2.24
82 83 1.610522 CACAAGCTAGCCAAAGCACTT 59.389 47.619 12.13 0.00 45.30 3.16
83 84 1.242076 CACAAGCTAGCCAAAGCACT 58.758 50.000 12.13 0.00 45.30 4.40
84 85 0.954452 ACACAAGCTAGCCAAAGCAC 59.046 50.000 12.13 0.00 45.30 4.40
85 86 2.559698 TACACAAGCTAGCCAAAGCA 57.440 45.000 12.13 0.00 45.30 3.91
86 87 3.274288 AGATACACAAGCTAGCCAAAGC 58.726 45.455 12.13 0.00 43.11 3.51
93 94 4.541779 CGAAGGCTAGATACACAAGCTAG 58.458 47.826 0.00 0.00 36.48 3.42
94 95 3.318275 CCGAAGGCTAGATACACAAGCTA 59.682 47.826 0.00 0.00 46.14 3.32
95 96 2.101582 CCGAAGGCTAGATACACAAGCT 59.898 50.000 0.00 0.00 46.14 3.74
96 97 2.474816 CCGAAGGCTAGATACACAAGC 58.525 52.381 0.00 0.00 46.14 4.01
110 111 1.079543 CTCACACAGAGCCCGAAGG 60.080 63.158 0.00 0.00 41.40 3.46
111 112 4.586618 CTCACACAGAGCCCGAAG 57.413 61.111 0.00 0.00 37.59 3.79
119 120 4.689612 AGTAAGAAAAGGCTCACACAGA 57.310 40.909 0.00 0.00 0.00 3.41
120 121 5.757850 AAAGTAAGAAAAGGCTCACACAG 57.242 39.130 0.00 0.00 0.00 3.66
121 122 5.885912 AGAAAAGTAAGAAAAGGCTCACACA 59.114 36.000 0.00 0.00 0.00 3.72
122 123 6.378710 AGAAAAGTAAGAAAAGGCTCACAC 57.621 37.500 0.00 0.00 0.00 3.82
123 124 6.377146 ACAAGAAAAGTAAGAAAAGGCTCACA 59.623 34.615 0.00 0.00 0.00 3.58
124 125 6.796426 ACAAGAAAAGTAAGAAAAGGCTCAC 58.204 36.000 0.00 0.00 0.00 3.51
125 126 7.122055 TCAACAAGAAAAGTAAGAAAAGGCTCA 59.878 33.333 0.00 0.00 0.00 4.26
126 127 7.432545 GTCAACAAGAAAAGTAAGAAAAGGCTC 59.567 37.037 0.00 0.00 0.00 4.70
127 128 7.093945 TGTCAACAAGAAAAGTAAGAAAAGGCT 60.094 33.333 0.00 0.00 0.00 4.58
128 129 7.033185 TGTCAACAAGAAAAGTAAGAAAAGGC 58.967 34.615 0.00 0.00 0.00 4.35
129 130 8.860128 GTTGTCAACAAGAAAAGTAAGAAAAGG 58.140 33.333 10.93 0.00 36.39 3.11
130 131 8.860128 GGTTGTCAACAAGAAAAGTAAGAAAAG 58.140 33.333 17.29 0.00 36.39 2.27
131 132 8.581578 AGGTTGTCAACAAGAAAAGTAAGAAAA 58.418 29.630 17.29 0.00 36.39 2.29
132 133 8.117813 AGGTTGTCAACAAGAAAAGTAAGAAA 57.882 30.769 17.29 0.00 36.39 2.52
133 134 7.696992 AGGTTGTCAACAAGAAAAGTAAGAA 57.303 32.000 17.29 0.00 36.39 2.52
134 135 7.392113 TCAAGGTTGTCAACAAGAAAAGTAAGA 59.608 33.333 17.29 0.00 36.39 2.10
135 136 7.535139 TCAAGGTTGTCAACAAGAAAAGTAAG 58.465 34.615 17.29 0.00 36.39 2.34
136 137 7.392113 TCTCAAGGTTGTCAACAAGAAAAGTAA 59.608 33.333 17.29 0.00 36.39 2.24
137 138 6.882140 TCTCAAGGTTGTCAACAAGAAAAGTA 59.118 34.615 17.29 0.00 36.39 2.24
138 139 5.710099 TCTCAAGGTTGTCAACAAGAAAAGT 59.290 36.000 17.29 0.00 36.39 2.66
139 140 6.030228 GTCTCAAGGTTGTCAACAAGAAAAG 58.970 40.000 17.29 6.83 36.39 2.27
140 141 5.710099 AGTCTCAAGGTTGTCAACAAGAAAA 59.290 36.000 17.29 1.38 36.39 2.29
141 142 5.253330 AGTCTCAAGGTTGTCAACAAGAAA 58.747 37.500 17.29 0.00 36.39 2.52
142 143 4.843728 AGTCTCAAGGTTGTCAACAAGAA 58.156 39.130 17.29 0.00 36.39 2.52
143 144 4.487714 AGTCTCAAGGTTGTCAACAAGA 57.512 40.909 17.29 10.62 36.39 3.02
144 145 4.201950 CCAAGTCTCAAGGTTGTCAACAAG 60.202 45.833 17.29 8.69 36.39 3.16
145 146 3.694072 CCAAGTCTCAAGGTTGTCAACAA 59.306 43.478 17.29 0.00 0.00 2.83
146 147 3.054728 TCCAAGTCTCAAGGTTGTCAACA 60.055 43.478 17.29 0.00 0.00 3.33
147 148 3.541632 TCCAAGTCTCAAGGTTGTCAAC 58.458 45.455 7.20 7.20 0.00 3.18
148 149 3.454447 TCTCCAAGTCTCAAGGTTGTCAA 59.546 43.478 0.00 0.00 0.00 3.18
149 150 3.038280 TCTCCAAGTCTCAAGGTTGTCA 58.962 45.455 0.00 0.00 0.00 3.58
150 151 3.070302 AGTCTCCAAGTCTCAAGGTTGTC 59.930 47.826 0.00 0.00 0.00 3.18
151 152 3.041946 AGTCTCCAAGTCTCAAGGTTGT 58.958 45.455 0.00 0.00 0.00 3.32
152 153 3.760580 AGTCTCCAAGTCTCAAGGTTG 57.239 47.619 0.00 0.00 0.00 3.77
153 154 4.080299 ACAAAGTCTCCAAGTCTCAAGGTT 60.080 41.667 0.00 0.00 0.00 3.50
154 155 3.456277 ACAAAGTCTCCAAGTCTCAAGGT 59.544 43.478 0.00 0.00 0.00 3.50
155 156 3.812053 CACAAAGTCTCCAAGTCTCAAGG 59.188 47.826 0.00 0.00 0.00 3.61
156 157 3.812053 CCACAAAGTCTCCAAGTCTCAAG 59.188 47.826 0.00 0.00 0.00 3.02
157 158 3.454447 TCCACAAAGTCTCCAAGTCTCAA 59.546 43.478 0.00 0.00 0.00 3.02
158 159 3.038280 TCCACAAAGTCTCCAAGTCTCA 58.962 45.455 0.00 0.00 0.00 3.27
159 160 3.070302 AGTCCACAAAGTCTCCAAGTCTC 59.930 47.826 0.00 0.00 0.00 3.36
160 161 3.041946 AGTCCACAAAGTCTCCAAGTCT 58.958 45.455 0.00 0.00 0.00 3.24
161 162 3.477210 AGTCCACAAAGTCTCCAAGTC 57.523 47.619 0.00 0.00 0.00 3.01
162 163 5.568620 AATAGTCCACAAAGTCTCCAAGT 57.431 39.130 0.00 0.00 0.00 3.16
163 164 6.884280 AAAATAGTCCACAAAGTCTCCAAG 57.116 37.500 0.00 0.00 0.00 3.61
164 165 7.094377 GCATAAAATAGTCCACAAAGTCTCCAA 60.094 37.037 0.00 0.00 0.00 3.53
165 166 6.374333 GCATAAAATAGTCCACAAAGTCTCCA 59.626 38.462 0.00 0.00 0.00 3.86
166 167 6.599638 AGCATAAAATAGTCCACAAAGTCTCC 59.400 38.462 0.00 0.00 0.00 3.71
167 168 7.617041 AGCATAAAATAGTCCACAAAGTCTC 57.383 36.000 0.00 0.00 0.00 3.36
168 169 9.515226 TTAAGCATAAAATAGTCCACAAAGTCT 57.485 29.630 0.00 0.00 0.00 3.24
179 180 8.730680 CGGCCATCTTATTAAGCATAAAATAGT 58.269 33.333 2.24 0.00 0.00 2.12
180 181 8.730680 ACGGCCATCTTATTAAGCATAAAATAG 58.269 33.333 2.24 0.00 0.00 1.73
181 182 8.630054 ACGGCCATCTTATTAAGCATAAAATA 57.370 30.769 2.24 0.00 0.00 1.40
182 183 7.524717 ACGGCCATCTTATTAAGCATAAAAT 57.475 32.000 2.24 0.00 0.00 1.82
183 184 6.952773 ACGGCCATCTTATTAAGCATAAAA 57.047 33.333 2.24 0.00 0.00 1.52
184 185 7.361713 GCATACGGCCATCTTATTAAGCATAAA 60.362 37.037 2.24 0.00 36.11 1.40
185 186 6.093495 GCATACGGCCATCTTATTAAGCATAA 59.907 38.462 2.24 0.00 36.11 1.90
186 187 5.584649 GCATACGGCCATCTTATTAAGCATA 59.415 40.000 2.24 0.00 36.11 3.14
187 188 4.396166 GCATACGGCCATCTTATTAAGCAT 59.604 41.667 2.24 0.00 36.11 3.79
188 189 3.751175 GCATACGGCCATCTTATTAAGCA 59.249 43.478 2.24 0.00 36.11 3.91
189 190 3.751175 TGCATACGGCCATCTTATTAAGC 59.249 43.478 2.24 0.00 43.89 3.09
190 191 5.643348 TGATGCATACGGCCATCTTATTAAG 59.357 40.000 2.24 0.00 43.89 1.85
191 192 5.555966 TGATGCATACGGCCATCTTATTAA 58.444 37.500 2.24 0.00 43.89 1.40
192 193 5.159273 TGATGCATACGGCCATCTTATTA 57.841 39.130 2.24 0.00 43.89 0.98
193 194 4.019792 TGATGCATACGGCCATCTTATT 57.980 40.909 2.24 0.00 43.89 1.40
194 195 3.701205 TGATGCATACGGCCATCTTAT 57.299 42.857 2.24 0.00 43.89 1.73
195 196 3.337358 CATGATGCATACGGCCATCTTA 58.663 45.455 2.24 0.00 43.89 2.10
196 197 2.156917 CATGATGCATACGGCCATCTT 58.843 47.619 2.24 0.00 43.89 2.40
197 198 1.817357 CATGATGCATACGGCCATCT 58.183 50.000 2.24 0.00 43.89 2.90
198 199 0.169672 GCATGATGCATACGGCCATC 59.830 55.000 13.36 0.00 44.26 3.51
199 200 2.260247 GCATGATGCATACGGCCAT 58.740 52.632 13.36 0.00 44.26 4.40
200 201 3.748623 GCATGATGCATACGGCCA 58.251 55.556 13.36 0.00 44.26 5.36
217 218 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
219 220 3.764160 CTTCCCCGGCCTCTGCATC 62.764 68.421 0.00 0.00 40.13 3.91
220 221 3.801997 CTTCCCCGGCCTCTGCAT 61.802 66.667 0.00 0.00 40.13 3.96
279 280 7.884877 ACACATTTCTCCTCTTGTTGATTGATA 59.115 33.333 0.00 0.00 0.00 2.15
404 406 1.267806 CCGTCAATGTGCTTTCAGCTT 59.732 47.619 0.00 0.00 42.97 3.74
419 421 0.896479 TTCCACATCGTCTCCCGTCA 60.896 55.000 0.00 0.00 37.94 4.35
430 432 3.003068 CGCATTCATTCCTCTTCCACATC 59.997 47.826 0.00 0.00 0.00 3.06
431 433 2.947652 CGCATTCATTCCTCTTCCACAT 59.052 45.455 0.00 0.00 0.00 3.21
432 434 2.358957 CGCATTCATTCCTCTTCCACA 58.641 47.619 0.00 0.00 0.00 4.17
511 1449 7.165154 CAGTCGTGAAACATTACAAAAACGAAT 59.835 33.333 0.00 0.00 40.10 3.34
527 1465 3.317993 TCACAGTGAGATCAGTCGTGAAA 59.682 43.478 0.00 1.84 35.96 2.69
545 1483 4.406648 AATCCTCGCAGATGTTATCACA 57.593 40.909 0.00 0.00 37.31 3.58
558 1496 6.152379 ACAATCTCTTTTGAAAAATCCTCGC 58.848 36.000 0.00 0.00 0.00 5.03
592 1544 1.361668 CTGTACTGCGTCATGCCACC 61.362 60.000 0.00 0.00 45.60 4.61
594 1546 1.079197 CCTGTACTGCGTCATGCCA 60.079 57.895 0.00 0.00 45.60 4.92
609 1561 1.291877 GCAGGTAACGTGTCAGCCTG 61.292 60.000 15.34 15.34 46.82 4.85
675 1673 3.099362 GACGGATAGCTATTGCGTATCG 58.901 50.000 17.62 11.37 41.35 2.92
681 1679 2.150397 AACGGACGGATAGCTATTGC 57.850 50.000 7.87 0.00 40.05 3.56
751 1749 0.036388 TGAGTTGGGATGCGACCTTC 60.036 55.000 0.00 0.00 0.00 3.46
849 1847 5.234329 TCGCGGAATCAGATGATTTTCTAAC 59.766 40.000 6.13 0.00 44.14 2.34
853 1851 4.212004 TGATCGCGGAATCAGATGATTTTC 59.788 41.667 6.13 5.06 44.14 2.29
855 1853 3.732212 TGATCGCGGAATCAGATGATTT 58.268 40.909 6.13 0.00 44.14 2.17
865 1863 2.006888 ACGAATGTTTGATCGCGGAAT 58.993 42.857 6.13 0.00 42.61 3.01
1020 2042 2.343758 GCCGTGAAGCTGGTGAGA 59.656 61.111 0.00 0.00 0.00 3.27
1021 2043 3.114616 CGCCGTGAAGCTGGTGAG 61.115 66.667 0.00 0.00 38.00 3.51
1022 2044 4.680237 CCGCCGTGAAGCTGGTGA 62.680 66.667 3.03 0.00 38.00 4.02
1023 2045 4.988598 ACCGCCGTGAAGCTGGTG 62.989 66.667 0.00 0.00 37.94 4.17
1024 2046 4.681978 GACCGCCGTGAAGCTGGT 62.682 66.667 0.00 0.00 40.63 4.00
1025 2047 4.680237 TGACCGCCGTGAAGCTGG 62.680 66.667 0.00 0.00 34.13 4.85
1195 2220 0.472044 ATGCCGGTGTACCATATGCA 59.528 50.000 1.90 0.00 35.14 3.96
1288 2313 2.408565 AGAGTTGTTGGTGAGGGAGAA 58.591 47.619 0.00 0.00 0.00 2.87
1322 2347 1.145156 CGGCCACCATTACCATCGA 59.855 57.895 2.24 0.00 0.00 3.59
1469 2494 0.593128 GAATGTGTCAGTGTGGTGGC 59.407 55.000 0.00 0.00 0.00 5.01
1515 2540 0.810648 CGGTGCCATGTGTGCTATTT 59.189 50.000 0.00 0.00 0.00 1.40
1617 2647 2.704065 CCCGTCCCATAGGAATACTTGT 59.296 50.000 0.00 0.00 46.38 3.16
1827 6153 3.366476 GCTGATACTCGCCATAGTAGGTG 60.366 52.174 0.00 0.00 40.55 4.00
2088 7168 1.227383 CCCCGGCAAGGCTAAGAAT 59.773 57.895 0.00 0.00 39.21 2.40
2147 7227 0.520404 GCACTCCTCGAACGTACTCA 59.480 55.000 0.00 0.00 0.00 3.41
2257 7340 1.475280 CCATTCCACACCAAGCATCTG 59.525 52.381 0.00 0.00 0.00 2.90
2354 7737 4.599047 AGCTAGATCTGATACCAGTTGC 57.401 45.455 5.18 0.00 41.16 4.17
2531 7979 8.918202 TTTCTAAGTCATGTAACAACCATCTT 57.082 30.769 0.00 0.00 0.00 2.40
2681 8140 6.840780 ACACTAGAGCTTAAAATTGGCAAT 57.159 33.333 6.96 6.96 0.00 3.56
2688 8147 7.908453 AGTACCAGAACACTAGAGCTTAAAAT 58.092 34.615 0.00 0.00 0.00 1.82
2721 8180 6.454795 TGAATTTTAACCATGCAAGGAAGAC 58.545 36.000 16.33 0.00 0.00 3.01
2798 8260 9.333497 GGTGGTCAAATATAACGTTTTACTTTC 57.667 33.333 5.91 0.00 0.00 2.62
2823 8285 4.141914 GGTGAGACTTACACTCCCATAAGG 60.142 50.000 0.00 0.00 38.20 2.69
2824 8286 4.466370 TGGTGAGACTTACACTCCCATAAG 59.534 45.833 0.00 0.00 38.20 1.73
2825 8287 4.222145 GTGGTGAGACTTACACTCCCATAA 59.778 45.833 0.00 0.00 37.21 1.90
2826 8288 3.767673 GTGGTGAGACTTACACTCCCATA 59.232 47.826 0.00 0.00 37.21 2.74
2827 8289 2.567615 GTGGTGAGACTTACACTCCCAT 59.432 50.000 0.00 0.00 37.21 4.00
2828 8290 1.968493 GTGGTGAGACTTACACTCCCA 59.032 52.381 0.00 0.00 38.20 4.37
2829 8291 1.275573 GGTGGTGAGACTTACACTCCC 59.724 57.143 0.00 0.00 38.20 4.30
2830 8292 1.968493 TGGTGGTGAGACTTACACTCC 59.032 52.381 0.00 0.00 38.20 3.85
2831 8293 3.746045 TTGGTGGTGAGACTTACACTC 57.254 47.619 0.00 0.00 38.20 3.51
2832 8294 4.080526 AGTTTTGGTGGTGAGACTTACACT 60.081 41.667 0.00 0.00 38.20 3.55
2833 8295 4.196971 AGTTTTGGTGGTGAGACTTACAC 58.803 43.478 0.00 0.00 37.51 2.90
2834 8296 4.497291 AGTTTTGGTGGTGAGACTTACA 57.503 40.909 0.00 0.00 0.00 2.41
2835 8297 4.036380 CCAAGTTTTGGTGGTGAGACTTAC 59.964 45.833 0.00 0.00 45.93 2.34
2836 8298 4.204012 CCAAGTTTTGGTGGTGAGACTTA 58.796 43.478 0.00 0.00 45.93 2.24
2837 8299 3.023832 CCAAGTTTTGGTGGTGAGACTT 58.976 45.455 0.00 0.00 45.93 3.01
2838 8300 2.654863 CCAAGTTTTGGTGGTGAGACT 58.345 47.619 0.00 0.00 45.93 3.24
2849 8311 4.247267 ACATGATGCAGTCCAAGTTTTG 57.753 40.909 0.00 0.00 0.00 2.44
2850 8312 5.072741 AGTACATGATGCAGTCCAAGTTTT 58.927 37.500 0.00 0.00 0.00 2.43
2851 8313 4.655963 AGTACATGATGCAGTCCAAGTTT 58.344 39.130 0.00 0.00 0.00 2.66
2852 8314 4.292186 AGTACATGATGCAGTCCAAGTT 57.708 40.909 0.00 0.00 0.00 2.66
2853 8315 3.988976 AGTACATGATGCAGTCCAAGT 57.011 42.857 0.00 0.00 0.00 3.16
2854 8316 4.122776 GGTAGTACATGATGCAGTCCAAG 58.877 47.826 0.00 0.00 0.00 3.61
2855 8317 3.517500 TGGTAGTACATGATGCAGTCCAA 59.482 43.478 0.00 0.00 0.00 3.53
2856 8318 3.103742 TGGTAGTACATGATGCAGTCCA 58.896 45.455 0.00 0.00 0.00 4.02
2857 8319 3.819564 TGGTAGTACATGATGCAGTCC 57.180 47.619 0.00 0.00 0.00 3.85
2858 8320 9.658799 ATTATTATGGTAGTACATGATGCAGTC 57.341 33.333 0.00 0.00 30.78 3.51
2874 8336 8.720537 CGGGGAAGGGTATATTATTATTATGGT 58.279 37.037 0.00 0.00 0.00 3.55
2875 8337 7.664318 GCGGGGAAGGGTATATTATTATTATGG 59.336 40.741 0.00 0.00 0.00 2.74
2876 8338 8.215050 TGCGGGGAAGGGTATATTATTATTATG 58.785 37.037 0.00 0.00 0.00 1.90
2877 8339 8.339720 TGCGGGGAAGGGTATATTATTATTAT 57.660 34.615 0.00 0.00 0.00 1.28
2878 8340 7.752518 TGCGGGGAAGGGTATATTATTATTA 57.247 36.000 0.00 0.00 0.00 0.98
2879 8341 6.645884 TGCGGGGAAGGGTATATTATTATT 57.354 37.500 0.00 0.00 0.00 1.40
2880 8342 6.645884 TTGCGGGGAAGGGTATATTATTAT 57.354 37.500 0.00 0.00 0.00 1.28
2881 8343 6.451292 TTTGCGGGGAAGGGTATATTATTA 57.549 37.500 0.00 0.00 0.00 0.98
2882 8344 5.327737 TTTGCGGGGAAGGGTATATTATT 57.672 39.130 0.00 0.00 0.00 1.40
2883 8345 5.327737 TTTTGCGGGGAAGGGTATATTAT 57.672 39.130 0.00 0.00 0.00 1.28
2884 8346 4.792513 TTTTGCGGGGAAGGGTATATTA 57.207 40.909 0.00 0.00 0.00 0.98
2885 8347 3.673543 TTTTGCGGGGAAGGGTATATT 57.326 42.857 0.00 0.00 0.00 1.28
2886 8348 3.673543 TTTTTGCGGGGAAGGGTATAT 57.326 42.857 0.00 0.00 0.00 0.86
2887 8349 3.673543 ATTTTTGCGGGGAAGGGTATA 57.326 42.857 0.00 0.00 0.00 1.47
2888 8350 2.543037 ATTTTTGCGGGGAAGGGTAT 57.457 45.000 0.00 0.00 0.00 2.73
2889 8351 3.453059 TTATTTTTGCGGGGAAGGGTA 57.547 42.857 0.00 0.00 0.00 3.69
2890 8352 2.312424 TTATTTTTGCGGGGAAGGGT 57.688 45.000 0.00 0.00 0.00 4.34
2891 8353 5.545063 ATTATTATTTTTGCGGGGAAGGG 57.455 39.130 0.00 0.00 0.00 3.95
2951 8413 6.608405 TGTTCTCGTTTTATATACTCAGGGGA 59.392 38.462 0.00 0.00 0.00 4.81
2968 8430 7.064728 GCCATCTAAGAAGTTATTTGTTCTCGT 59.935 37.037 0.00 0.00 31.61 4.18
2999 8461 7.341445 CTCCTCAGAGTAGTTAAACTATGCT 57.659 40.000 0.00 0.00 38.34 3.79
3015 8477 5.363101 GTTATCATTGCATCACTCCTCAGA 58.637 41.667 0.00 0.00 0.00 3.27
3019 8481 4.142609 ACGTTATCATTGCATCACTCCT 57.857 40.909 0.00 0.00 0.00 3.69
3028 8490 6.522510 GGTACTAGATCGTACGTTATCATTGC 59.477 42.308 16.05 4.14 40.44 3.56
3030 8492 7.734924 TGGTACTAGATCGTACGTTATCATT 57.265 36.000 16.05 3.26 40.44 2.57
3031 8493 7.734924 TTGGTACTAGATCGTACGTTATCAT 57.265 36.000 16.05 0.00 40.44 2.45
3036 8498 8.213518 TCTTATTTGGTACTAGATCGTACGTT 57.786 34.615 16.05 6.89 40.44 3.99
3043 8505 8.308207 GGACTCCATCTTATTTGGTACTAGATC 58.692 40.741 0.00 0.00 35.64 2.75
3049 8514 6.235231 TGAGGACTCCATCTTATTTGGTAC 57.765 41.667 0.00 0.00 35.64 3.34
3070 8535 7.907389 AGAAGTATGTGGTTTCTCTAACATGA 58.093 34.615 0.00 0.00 38.55 3.07
3079 8544 3.368531 GGCGAGAGAAGTATGTGGTTTCT 60.369 47.826 0.00 0.00 34.06 2.52
3091 8556 2.315925 TTGCAATAGGGCGAGAGAAG 57.684 50.000 0.00 0.00 36.28 2.85
3094 8559 1.143305 CGATTGCAATAGGGCGAGAG 58.857 55.000 12.97 0.00 36.28 3.20
3099 8564 1.512926 ACGATCGATTGCAATAGGGC 58.487 50.000 24.34 7.14 0.00 5.19
3114 8579 2.288961 GGACATGGTGTACGAACGAT 57.711 50.000 0.00 0.00 0.00 3.73
3127 8592 3.335356 AAGGGCTCTGGCGGACATG 62.335 63.158 0.00 0.00 39.81 3.21
3135 8600 0.825010 ACAAAGTGCAAGGGCTCTGG 60.825 55.000 0.00 0.00 42.66 3.86
3140 8605 4.736165 CACACAAAGTGCAAGGGC 57.264 55.556 0.00 0.00 42.15 5.19
3150 8615 0.110010 CGCACACACACACACACAAA 60.110 50.000 0.00 0.00 0.00 2.83
3151 8616 1.499502 CGCACACACACACACACAA 59.500 52.632 0.00 0.00 0.00 3.33
3152 8617 3.033166 GCGCACACACACACACACA 62.033 57.895 0.30 0.00 0.00 3.72
3153 8618 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
3154 8619 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
3169 8634 4.851114 CTGTGTGTATGCGCGCGC 62.851 66.667 45.02 45.02 38.36 6.86
3170 8635 2.024226 ATTCTGTGTGTATGCGCGCG 62.024 55.000 28.44 28.44 38.36 6.86
3171 8636 0.587242 CATTCTGTGTGTATGCGCGC 60.587 55.000 27.26 27.26 36.27 6.86
3172 8637 0.026674 CCATTCTGTGTGTATGCGCG 59.973 55.000 0.00 0.00 0.00 6.86
3173 8638 0.378257 CCCATTCTGTGTGTATGCGC 59.622 55.000 0.00 0.00 0.00 6.09
3222 8687 5.978919 GCGATTGCAATGATATGGAAAGAAA 59.021 36.000 18.59 0.00 42.15 2.52
3224 8689 4.823442 AGCGATTGCAATGATATGGAAAGA 59.177 37.500 18.59 0.00 46.23 2.52
3261 8726 1.145571 AGCTAACCCCTTCAACACCA 58.854 50.000 0.00 0.00 0.00 4.17



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.