Multiple sequence alignment - TraesCS5A01G351200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G351200 chr5A 100.000 2705 0 0 1 2705 554064069 554061365 0.000000e+00 4996
1 TraesCS5A01G351200 chr5A 86.447 546 47 11 266 801 554171314 554170786 8.400000e-160 573
2 TraesCS5A01G351200 chr5A 85.171 263 34 3 14 271 554148380 554148118 5.740000e-67 265
3 TraesCS5A01G351200 chr5A 93.519 108 7 0 623 730 663713754 663713647 7.750000e-36 161
4 TraesCS5A01G351200 chr5A 95.745 94 4 0 728 821 554170766 554170673 4.660000e-33 152
5 TraesCS5A01G351200 chr5D 87.550 1992 197 32 734 2684 438547660 438545679 0.000000e+00 2257
6 TraesCS5A01G351200 chr5D 79.577 1890 313 46 822 2669 438457479 438455621 0.000000e+00 1284
7 TraesCS5A01G351200 chr5D 89.407 236 17 6 392 627 438461826 438461599 9.470000e-75 291
8 TraesCS5A01G351200 chr5D 89.362 141 13 2 266 406 438462254 438462116 2.770000e-40 176
9 TraesCS5A01G351200 chr5D 95.745 94 4 0 728 821 438461603 438461510 4.660000e-33 152
10 TraesCS5A01G351200 chr5B 81.928 1992 304 37 728 2684 533392212 533390242 0.000000e+00 1633
11 TraesCS5A01G351200 chr5B 79.076 1883 323 52 834 2662 533093419 533091554 0.000000e+00 1229
12 TraesCS5A01G351200 chr5B 79.192 1783 318 34 923 2668 533386025 533384259 0.000000e+00 1188
13 TraesCS5A01G351200 chr5B 88.333 360 25 10 266 624 533392556 533392213 1.500000e-112 416
14 TraesCS5A01G351200 chr5B 77.011 435 86 8 1895 2321 533380671 533380243 1.250000e-58 237
15 TraesCS5A01G351200 chrUn 79.083 1984 321 62 728 2658 63296604 63294662 0.000000e+00 1279
16 TraesCS5A01G351200 chrUn 79.032 1984 323 61 728 2658 319150811 319148868 0.000000e+00 1273
17 TraesCS5A01G351200 chrUn 81.718 1362 205 31 728 2063 63395133 63396476 0.000000e+00 1096
18 TraesCS5A01G351200 chrUn 81.718 1362 205 31 728 2063 312227099 312225756 0.000000e+00 1096
19 TraesCS5A01G351200 chrUn 92.593 108 8 0 623 730 98087547 98087440 3.610000e-34 156
20 TraesCS5A01G351200 chrUn 73.737 396 63 24 2290 2658 63397156 63397537 1.700000e-22 117
21 TraesCS5A01G351200 chr2A 73.578 1283 294 34 1022 2279 14723359 14722097 1.480000e-122 449
22 TraesCS5A01G351200 chr2A 90.435 115 10 1 615 729 565370802 565370915 1.680000e-32 150
23 TraesCS5A01G351200 chr4B 94.495 109 6 0 623 731 330522473 330522365 4.630000e-38 169
24 TraesCS5A01G351200 chr4B 90.435 115 11 0 616 730 172646552 172646438 4.660000e-33 152
25 TraesCS5A01G351200 chr4A 91.525 118 9 1 614 731 603342231 603342347 7.750000e-36 161
26 TraesCS5A01G351200 chr2D 92.661 109 8 0 622 730 447505419 447505527 1.000000e-34 158
27 TraesCS5A01G351200 chr3A 90.351 114 11 0 617 730 99381672 99381785 1.680000e-32 150
28 TraesCS5A01G351200 chr2B 88.618 123 12 2 608 729 58336997 58337118 6.030000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G351200 chr5A 554061365 554064069 2704 True 4996.000000 4996 100.000000 1 2705 1 chr5A.!!$R1 2704
1 TraesCS5A01G351200 chr5A 554170673 554171314 641 True 362.500000 573 91.096000 266 821 2 chr5A.!!$R4 555
2 TraesCS5A01G351200 chr5D 438545679 438547660 1981 True 2257.000000 2257 87.550000 734 2684 1 chr5D.!!$R2 1950
3 TraesCS5A01G351200 chr5D 438455621 438457479 1858 True 1284.000000 1284 79.577000 822 2669 1 chr5D.!!$R1 1847
4 TraesCS5A01G351200 chr5D 438461510 438462254 744 True 206.333333 291 91.504667 266 821 3 chr5D.!!$R3 555
5 TraesCS5A01G351200 chr5B 533091554 533093419 1865 True 1229.000000 1229 79.076000 834 2662 1 chr5B.!!$R1 1828
6 TraesCS5A01G351200 chr5B 533390242 533392556 2314 True 1024.500000 1633 85.130500 266 2684 2 chr5B.!!$R3 2418
7 TraesCS5A01G351200 chr5B 533380243 533386025 5782 True 712.500000 1188 78.101500 923 2668 2 chr5B.!!$R2 1745
8 TraesCS5A01G351200 chrUn 63294662 63296604 1942 True 1279.000000 1279 79.083000 728 2658 1 chrUn.!!$R1 1930
9 TraesCS5A01G351200 chrUn 319148868 319150811 1943 True 1273.000000 1273 79.032000 728 2658 1 chrUn.!!$R4 1930
10 TraesCS5A01G351200 chrUn 312225756 312227099 1343 True 1096.000000 1096 81.718000 728 2063 1 chrUn.!!$R3 1335
11 TraesCS5A01G351200 chrUn 63395133 63397537 2404 False 606.500000 1096 77.727500 728 2658 2 chrUn.!!$F1 1930
12 TraesCS5A01G351200 chr2A 14722097 14723359 1262 True 449.000000 449 73.578000 1022 2279 1 chr2A.!!$R1 1257

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.106868 TCCTCCAGCCATTGAGCATG 60.107 55.0 0.00 0.0 34.23 4.06 F
193 194 0.108804 CATCGGCGTGTAGACCAGTT 60.109 55.0 6.85 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 2066 0.101219 CCAGATGATCGCGAGTGTCA 59.899 55.0 16.66 14.49 0.00 3.58 R
1746 2297 0.107703 ATGTCATCACCGTTGCCGAT 60.108 50.0 0.00 0.00 35.63 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.425577 AAGCTTAACAATGTAGCAGCAC 57.574 40.909 10.37 0.00 37.37 4.40
22 23 2.749621 AGCTTAACAATGTAGCAGCACC 59.250 45.455 10.37 0.00 37.37 5.01
23 24 2.487762 GCTTAACAATGTAGCAGCACCA 59.512 45.455 3.47 0.00 35.05 4.17
24 25 3.057596 GCTTAACAATGTAGCAGCACCAA 60.058 43.478 3.47 0.00 35.05 3.67
25 26 4.380867 GCTTAACAATGTAGCAGCACCAAT 60.381 41.667 3.47 0.00 35.05 3.16
26 27 5.163663 GCTTAACAATGTAGCAGCACCAATA 60.164 40.000 3.47 0.00 35.05 1.90
27 28 4.970662 AACAATGTAGCAGCACCAATAG 57.029 40.909 0.00 0.00 0.00 1.73
28 29 4.220693 ACAATGTAGCAGCACCAATAGA 57.779 40.909 0.00 0.00 0.00 1.98
29 30 3.941483 ACAATGTAGCAGCACCAATAGAC 59.059 43.478 0.00 0.00 0.00 2.59
30 31 4.194640 CAATGTAGCAGCACCAATAGACT 58.805 43.478 0.00 0.00 0.00 3.24
31 32 5.104941 ACAATGTAGCAGCACCAATAGACTA 60.105 40.000 0.00 0.00 0.00 2.59
32 33 4.655762 TGTAGCAGCACCAATAGACTAG 57.344 45.455 0.00 0.00 0.00 2.57
33 34 4.023980 TGTAGCAGCACCAATAGACTAGT 58.976 43.478 0.00 0.00 0.00 2.57
34 35 3.533606 AGCAGCACCAATAGACTAGTG 57.466 47.619 0.00 2.89 0.00 2.74
41 42 3.644884 CCAATAGACTAGTGGCTACCG 57.355 52.381 15.58 0.00 37.09 4.02
42 43 3.220110 CCAATAGACTAGTGGCTACCGA 58.780 50.000 15.58 0.00 37.09 4.69
43 44 3.827302 CCAATAGACTAGTGGCTACCGAT 59.173 47.826 15.58 0.00 37.09 4.18
44 45 4.321304 CCAATAGACTAGTGGCTACCGATG 60.321 50.000 15.58 0.00 37.09 3.84
45 46 1.693627 AGACTAGTGGCTACCGATGG 58.306 55.000 0.00 0.00 0.00 3.51
46 47 1.214673 AGACTAGTGGCTACCGATGGA 59.785 52.381 0.00 0.00 0.00 3.41
47 48 2.158445 AGACTAGTGGCTACCGATGGAT 60.158 50.000 0.00 0.00 0.00 3.41
48 49 2.628657 GACTAGTGGCTACCGATGGATT 59.371 50.000 0.00 0.00 0.00 3.01
49 50 2.365617 ACTAGTGGCTACCGATGGATTG 59.634 50.000 0.00 0.00 0.00 2.67
50 51 0.469917 AGTGGCTACCGATGGATTGG 59.530 55.000 0.00 0.00 37.36 3.16
51 52 1.148273 TGGCTACCGATGGATTGGC 59.852 57.895 0.00 0.00 34.49 4.52
52 53 1.600916 GGCTACCGATGGATTGGCC 60.601 63.158 0.00 0.00 34.49 5.36
53 54 1.961277 GCTACCGATGGATTGGCCG 60.961 63.158 0.00 0.00 40.66 6.13
54 55 1.301716 CTACCGATGGATTGGCCGG 60.302 63.158 0.00 0.00 46.65 6.13
55 56 3.469863 TACCGATGGATTGGCCGGC 62.470 63.158 21.18 21.18 45.29 6.13
56 57 4.569180 CCGATGGATTGGCCGGCT 62.569 66.667 28.56 6.33 40.66 5.52
57 58 2.974698 CGATGGATTGGCCGGCTC 60.975 66.667 28.56 16.50 40.66 4.70
58 59 2.192979 GATGGATTGGCCGGCTCA 59.807 61.111 28.56 19.91 40.66 4.26
59 60 2.124151 ATGGATTGGCCGGCTCAC 60.124 61.111 28.56 10.74 40.66 3.51
60 61 3.721370 ATGGATTGGCCGGCTCACC 62.721 63.158 28.56 22.99 40.66 4.02
62 63 4.424711 GATTGGCCGGCTCACCCA 62.425 66.667 28.56 12.88 0.00 4.51
63 64 3.721370 GATTGGCCGGCTCACCCAT 62.721 63.158 28.56 12.81 0.00 4.00
64 65 3.301222 ATTGGCCGGCTCACCCATT 62.301 57.895 28.56 8.79 0.00 3.16
65 66 3.936772 TTGGCCGGCTCACCCATTC 62.937 63.158 28.56 6.48 0.00 2.67
66 67 4.115199 GGCCGGCTCACCCATTCT 62.115 66.667 28.56 0.00 0.00 2.40
67 68 2.044946 GCCGGCTCACCCATTCTT 60.045 61.111 22.15 0.00 0.00 2.52
68 69 2.115291 GCCGGCTCACCCATTCTTC 61.115 63.158 22.15 0.00 0.00 2.87
69 70 1.299648 CCGGCTCACCCATTCTTCA 59.700 57.895 0.00 0.00 0.00 3.02
70 71 1.026718 CCGGCTCACCCATTCTTCAC 61.027 60.000 0.00 0.00 0.00 3.18
71 72 1.026718 CGGCTCACCCATTCTTCACC 61.027 60.000 0.00 0.00 0.00 4.02
72 73 0.681243 GGCTCACCCATTCTTCACCC 60.681 60.000 0.00 0.00 0.00 4.61
73 74 1.026718 GCTCACCCATTCTTCACCCG 61.027 60.000 0.00 0.00 0.00 5.28
74 75 1.002624 TCACCCATTCTTCACCCGC 60.003 57.895 0.00 0.00 0.00 6.13
75 76 1.303236 CACCCATTCTTCACCCGCA 60.303 57.895 0.00 0.00 0.00 5.69
76 77 1.303317 ACCCATTCTTCACCCGCAC 60.303 57.895 0.00 0.00 0.00 5.34
77 78 1.002134 CCCATTCTTCACCCGCACT 60.002 57.895 0.00 0.00 0.00 4.40
78 79 1.308069 CCCATTCTTCACCCGCACTG 61.308 60.000 0.00 0.00 0.00 3.66
79 80 1.503542 CATTCTTCACCCGCACTGC 59.496 57.895 0.00 0.00 0.00 4.40
80 81 1.073025 ATTCTTCACCCGCACTGCA 59.927 52.632 1.11 0.00 0.00 4.41
81 82 0.957395 ATTCTTCACCCGCACTGCAG 60.957 55.000 13.48 13.48 0.00 4.41
82 83 2.281070 CTTCACCCGCACTGCAGT 60.281 61.111 15.25 15.25 0.00 4.40
83 84 1.893808 CTTCACCCGCACTGCAGTT 60.894 57.895 18.94 0.00 0.00 3.16
84 85 1.845809 CTTCACCCGCACTGCAGTTC 61.846 60.000 18.94 12.30 0.00 3.01
85 86 2.281070 CACCCGCACTGCAGTTCT 60.281 61.111 18.94 0.00 0.00 3.01
86 87 2.281070 ACCCGCACTGCAGTTCTG 60.281 61.111 18.94 8.99 0.00 3.02
87 88 2.031012 CCCGCACTGCAGTTCTGA 59.969 61.111 18.94 0.00 0.00 3.27
88 89 1.376424 CCCGCACTGCAGTTCTGAT 60.376 57.895 18.94 0.00 0.00 2.90
89 90 1.364626 CCCGCACTGCAGTTCTGATC 61.365 60.000 18.94 1.45 0.00 2.92
90 91 1.364626 CCGCACTGCAGTTCTGATCC 61.365 60.000 18.94 0.00 0.00 3.36
91 92 0.390866 CGCACTGCAGTTCTGATCCT 60.391 55.000 18.94 0.00 0.00 3.24
92 93 1.818642 GCACTGCAGTTCTGATCCTT 58.181 50.000 18.94 0.00 0.00 3.36
93 94 1.736681 GCACTGCAGTTCTGATCCTTC 59.263 52.381 18.94 0.00 0.00 3.46
94 95 2.614987 GCACTGCAGTTCTGATCCTTCT 60.615 50.000 18.94 0.00 0.00 2.85
95 96 3.368843 GCACTGCAGTTCTGATCCTTCTA 60.369 47.826 18.94 0.00 0.00 2.10
96 97 4.825422 CACTGCAGTTCTGATCCTTCTAA 58.175 43.478 18.94 0.00 0.00 2.10
97 98 5.426504 CACTGCAGTTCTGATCCTTCTAAT 58.573 41.667 18.94 0.00 0.00 1.73
98 99 5.523188 CACTGCAGTTCTGATCCTTCTAATC 59.477 44.000 18.94 0.00 0.00 1.75
99 100 5.028549 TGCAGTTCTGATCCTTCTAATCC 57.971 43.478 3.84 0.00 0.00 3.01
100 101 4.718774 TGCAGTTCTGATCCTTCTAATCCT 59.281 41.667 3.84 0.00 0.00 3.24
101 102 5.163364 TGCAGTTCTGATCCTTCTAATCCTC 60.163 44.000 3.84 0.00 0.00 3.71
102 103 5.741673 GCAGTTCTGATCCTTCTAATCCTCC 60.742 48.000 3.84 0.00 0.00 4.30
103 104 5.365025 CAGTTCTGATCCTTCTAATCCTCCA 59.635 44.000 0.00 0.00 0.00 3.86
104 105 5.602145 AGTTCTGATCCTTCTAATCCTCCAG 59.398 44.000 0.00 0.00 0.00 3.86
105 106 3.900601 TCTGATCCTTCTAATCCTCCAGC 59.099 47.826 0.00 0.00 0.00 4.85
106 107 2.975489 TGATCCTTCTAATCCTCCAGCC 59.025 50.000 0.00 0.00 0.00 4.85
107 108 2.568546 TCCTTCTAATCCTCCAGCCA 57.431 50.000 0.00 0.00 0.00 4.75
108 109 3.066208 TCCTTCTAATCCTCCAGCCAT 57.934 47.619 0.00 0.00 0.00 4.40
109 110 3.397527 TCCTTCTAATCCTCCAGCCATT 58.602 45.455 0.00 0.00 0.00 3.16
110 111 3.137176 TCCTTCTAATCCTCCAGCCATTG 59.863 47.826 0.00 0.00 0.00 2.82
111 112 3.137176 CCTTCTAATCCTCCAGCCATTGA 59.863 47.826 0.00 0.00 0.00 2.57
112 113 4.387598 CTTCTAATCCTCCAGCCATTGAG 58.612 47.826 0.00 0.00 0.00 3.02
113 114 2.105477 TCTAATCCTCCAGCCATTGAGC 59.895 50.000 0.00 0.00 0.00 4.26
114 115 0.627451 AATCCTCCAGCCATTGAGCA 59.373 50.000 0.00 0.00 34.23 4.26
115 116 0.851469 ATCCTCCAGCCATTGAGCAT 59.149 50.000 0.00 0.00 34.23 3.79
116 117 0.106868 TCCTCCAGCCATTGAGCATG 60.107 55.000 0.00 0.00 34.23 4.06
117 118 0.395311 CCTCCAGCCATTGAGCATGT 60.395 55.000 0.00 0.00 34.23 3.21
118 119 1.022735 CTCCAGCCATTGAGCATGTC 58.977 55.000 0.00 0.00 34.23 3.06
119 120 0.394762 TCCAGCCATTGAGCATGTCC 60.395 55.000 0.00 0.00 34.23 4.02
120 121 1.389609 CCAGCCATTGAGCATGTCCC 61.390 60.000 0.00 0.00 34.23 4.46
121 122 0.681887 CAGCCATTGAGCATGTCCCA 60.682 55.000 0.00 0.00 34.23 4.37
122 123 0.682209 AGCCATTGAGCATGTCCCAC 60.682 55.000 0.00 0.00 34.23 4.61
123 124 1.996786 GCCATTGAGCATGTCCCACG 61.997 60.000 0.00 0.00 0.00 4.94
124 125 0.392863 CCATTGAGCATGTCCCACGA 60.393 55.000 0.00 0.00 0.00 4.35
125 126 0.729116 CATTGAGCATGTCCCACGAC 59.271 55.000 0.00 0.00 39.66 4.34
132 133 3.625897 TGTCCCACGACAGGCTGG 61.626 66.667 20.34 4.16 44.20 4.85
133 134 3.626924 GTCCCACGACAGGCTGGT 61.627 66.667 20.34 4.89 38.99 4.00
134 135 3.311110 TCCCACGACAGGCTGGTC 61.311 66.667 20.34 12.55 34.42 4.02
135 136 3.314331 CCCACGACAGGCTGGTCT 61.314 66.667 20.34 0.00 35.63 3.85
136 137 2.262915 CCACGACAGGCTGGTCTC 59.737 66.667 20.34 6.49 35.63 3.36
137 138 2.262915 CACGACAGGCTGGTCTCC 59.737 66.667 20.34 1.51 35.63 3.71
138 139 3.374402 ACGACAGGCTGGTCTCCG 61.374 66.667 20.34 15.08 35.63 4.63
139 140 4.135153 CGACAGGCTGGTCTCCGG 62.135 72.222 20.34 0.00 35.63 5.14
146 147 2.435586 CTGGTCTCCGGCAAGCTG 60.436 66.667 0.00 0.00 0.00 4.24
147 148 3.965539 CTGGTCTCCGGCAAGCTGG 62.966 68.421 13.78 13.78 43.69 4.85
148 149 4.021925 GGTCTCCGGCAAGCTGGT 62.022 66.667 18.80 0.00 42.88 4.00
149 150 2.435059 GTCTCCGGCAAGCTGGTC 60.435 66.667 18.80 7.98 42.88 4.02
150 151 2.604686 TCTCCGGCAAGCTGGTCT 60.605 61.111 18.80 0.00 42.88 3.85
151 152 2.125350 CTCCGGCAAGCTGGTCTC 60.125 66.667 18.80 0.00 42.88 3.36
152 153 3.672295 CTCCGGCAAGCTGGTCTCC 62.672 68.421 18.80 0.00 42.88 3.71
153 154 4.020617 CCGGCAAGCTGGTCTCCA 62.021 66.667 11.80 0.00 37.68 3.86
154 155 2.743928 CGGCAAGCTGGTCTCCAC 60.744 66.667 0.00 0.00 0.00 4.02
155 156 2.753029 GGCAAGCTGGTCTCCACT 59.247 61.111 0.00 0.00 0.00 4.00
156 157 1.673665 GGCAAGCTGGTCTCCACTG 60.674 63.158 0.00 0.00 0.00 3.66
157 158 2.331132 GCAAGCTGGTCTCCACTGC 61.331 63.158 0.00 0.00 0.00 4.40
158 159 1.673665 CAAGCTGGTCTCCACTGCC 60.674 63.158 0.00 0.00 0.00 4.85
159 160 2.149383 AAGCTGGTCTCCACTGCCA 61.149 57.895 0.00 0.00 0.00 4.92
160 161 1.708993 AAGCTGGTCTCCACTGCCAA 61.709 55.000 0.00 0.00 0.00 4.52
161 162 1.673665 GCTGGTCTCCACTGCCAAG 60.674 63.158 0.00 0.00 0.00 3.61
162 163 1.673665 CTGGTCTCCACTGCCAAGC 60.674 63.158 0.00 0.00 0.00 4.01
163 164 2.360475 GGTCTCCACTGCCAAGCC 60.360 66.667 0.00 0.00 0.00 4.35
164 165 2.743928 GTCTCCACTGCCAAGCCG 60.744 66.667 0.00 0.00 0.00 5.52
165 166 3.241530 TCTCCACTGCCAAGCCGT 61.242 61.111 0.00 0.00 0.00 5.68
166 167 2.281761 CTCCACTGCCAAGCCGTT 60.282 61.111 0.00 0.00 0.00 4.44
167 168 2.594303 TCCACTGCCAAGCCGTTG 60.594 61.111 0.00 0.00 0.00 4.10
175 176 4.347096 CAAGCCGTTGGTCGTACA 57.653 55.556 0.00 0.00 37.94 2.90
176 177 2.835605 CAAGCCGTTGGTCGTACAT 58.164 52.632 0.00 0.00 37.94 2.29
177 178 0.719465 CAAGCCGTTGGTCGTACATC 59.281 55.000 0.00 0.00 37.94 3.06
178 179 0.734942 AAGCCGTTGGTCGTACATCG 60.735 55.000 0.00 5.87 41.41 3.84
179 180 4.082192 CCGTTGGTCGTACATCGG 57.918 61.111 13.91 13.91 44.32 4.18
180 181 2.162754 CCGTTGGTCGTACATCGGC 61.163 63.158 14.91 0.00 43.95 5.54
181 182 2.502123 CGTTGGTCGTACATCGGCG 61.502 63.158 0.00 0.00 45.92 6.46
182 183 1.444895 GTTGGTCGTACATCGGCGT 60.445 57.895 6.85 0.00 45.92 5.68
183 184 1.444724 TTGGTCGTACATCGGCGTG 60.445 57.895 6.85 7.38 45.92 5.34
184 185 2.144833 TTGGTCGTACATCGGCGTGT 62.145 55.000 16.72 16.72 45.92 4.49
185 186 1.304509 TGGTCGTACATCGGCGTGTA 61.305 55.000 6.85 12.15 45.92 2.90
186 187 0.590732 GGTCGTACATCGGCGTGTAG 60.591 60.000 18.07 13.49 45.92 2.74
187 188 0.374758 GTCGTACATCGGCGTGTAGA 59.625 55.000 18.07 14.92 40.32 2.59
188 189 0.374758 TCGTACATCGGCGTGTAGAC 59.625 55.000 18.07 11.71 40.32 2.59
189 190 0.590732 CGTACATCGGCGTGTAGACC 60.591 60.000 18.07 9.32 35.40 3.85
190 191 0.452987 GTACATCGGCGTGTAGACCA 59.547 55.000 18.07 1.65 35.40 4.02
191 192 0.736636 TACATCGGCGTGTAGACCAG 59.263 55.000 6.85 0.00 33.62 4.00
192 193 1.248785 ACATCGGCGTGTAGACCAGT 61.249 55.000 6.85 0.00 0.00 4.00
193 194 0.108804 CATCGGCGTGTAGACCAGTT 60.109 55.000 6.85 0.00 0.00 3.16
194 195 0.606604 ATCGGCGTGTAGACCAGTTT 59.393 50.000 6.85 0.00 0.00 2.66
195 196 0.319211 TCGGCGTGTAGACCAGTTTG 60.319 55.000 6.85 0.00 0.00 2.93
196 197 0.599204 CGGCGTGTAGACCAGTTTGT 60.599 55.000 0.00 0.00 0.00 2.83
197 198 1.145803 GGCGTGTAGACCAGTTTGTC 58.854 55.000 0.00 0.00 35.43 3.18
198 199 1.145803 GCGTGTAGACCAGTTTGTCC 58.854 55.000 0.00 0.00 35.83 4.02
199 200 1.539496 GCGTGTAGACCAGTTTGTCCA 60.539 52.381 0.00 0.00 35.83 4.02
200 201 2.828877 CGTGTAGACCAGTTTGTCCAA 58.171 47.619 0.00 0.00 35.83 3.53
201 202 2.800544 CGTGTAGACCAGTTTGTCCAAG 59.199 50.000 0.00 0.00 35.83 3.61
202 203 3.491964 CGTGTAGACCAGTTTGTCCAAGA 60.492 47.826 0.00 0.00 35.83 3.02
203 204 4.448210 GTGTAGACCAGTTTGTCCAAGAA 58.552 43.478 0.00 0.00 35.83 2.52
204 205 5.063880 GTGTAGACCAGTTTGTCCAAGAAT 58.936 41.667 0.00 0.00 35.83 2.40
205 206 5.531287 GTGTAGACCAGTTTGTCCAAGAATT 59.469 40.000 0.00 0.00 35.83 2.17
220 221 4.937201 AAGAATTGAAACACTGGGGTTC 57.063 40.909 0.00 0.00 0.00 3.62
221 222 3.909732 AGAATTGAAACACTGGGGTTCA 58.090 40.909 6.22 6.22 0.00 3.18
222 223 4.285863 AGAATTGAAACACTGGGGTTCAA 58.714 39.130 23.93 23.93 0.00 2.69
223 224 4.099419 AGAATTGAAACACTGGGGTTCAAC 59.901 41.667 24.16 13.23 0.00 3.18
224 225 1.770294 TGAAACACTGGGGTTCAACC 58.230 50.000 8.15 0.00 37.60 3.77
225 226 0.666374 GAAACACTGGGGTTCAACCG 59.334 55.000 2.08 0.00 39.83 4.44
242 243 2.661866 GCGCGGCCGTATGAGAAT 60.662 61.111 28.70 0.00 36.67 2.40
243 244 1.372499 GCGCGGCCGTATGAGAATA 60.372 57.895 28.70 0.00 36.67 1.75
244 245 0.736325 GCGCGGCCGTATGAGAATAT 60.736 55.000 28.70 0.00 36.67 1.28
245 246 1.468565 GCGCGGCCGTATGAGAATATA 60.469 52.381 28.70 0.00 36.67 0.86
246 247 2.871133 CGCGGCCGTATGAGAATATAA 58.129 47.619 28.70 0.00 0.00 0.98
247 248 2.597305 CGCGGCCGTATGAGAATATAAC 59.403 50.000 28.70 3.02 0.00 1.89
248 249 2.928116 GCGGCCGTATGAGAATATAACC 59.072 50.000 28.70 0.00 0.00 2.85
249 250 3.518590 CGGCCGTATGAGAATATAACCC 58.481 50.000 19.50 0.00 0.00 4.11
250 251 3.056393 CGGCCGTATGAGAATATAACCCA 60.056 47.826 19.50 0.00 0.00 4.51
251 252 4.504858 GGCCGTATGAGAATATAACCCAG 58.495 47.826 0.00 0.00 0.00 4.45
252 253 4.504858 GCCGTATGAGAATATAACCCAGG 58.495 47.826 0.00 0.00 0.00 4.45
253 254 4.504858 CCGTATGAGAATATAACCCAGGC 58.495 47.826 0.00 0.00 0.00 4.85
254 255 4.504858 CGTATGAGAATATAACCCAGGCC 58.495 47.826 0.00 0.00 0.00 5.19
255 256 3.703001 ATGAGAATATAACCCAGGCCG 57.297 47.619 0.00 0.00 0.00 6.13
256 257 1.697432 TGAGAATATAACCCAGGCCGG 59.303 52.381 0.00 0.00 0.00 6.13
293 294 2.435693 GGCACCCGAGAGCTACCAT 61.436 63.158 0.00 0.00 0.00 3.55
300 301 2.434702 CCCGAGAGCTACCATACCTTTT 59.565 50.000 0.00 0.00 0.00 2.27
379 380 7.908827 TGCACATTAAGACGTTAGGAAATTA 57.091 32.000 0.00 0.00 0.00 1.40
380 381 8.500753 TGCACATTAAGACGTTAGGAAATTAT 57.499 30.769 0.00 0.00 0.00 1.28
384 386 9.886132 ACATTAAGACGTTAGGAAATTATGTCT 57.114 29.630 0.00 0.00 36.83 3.41
408 712 1.534729 ATGGAAGCACCTTTTCCGTC 58.465 50.000 1.91 0.00 45.70 4.79
504 808 1.749334 CTGGGCCCGGTCAGTATCTC 61.749 65.000 23.90 0.00 0.00 2.75
508 812 1.968493 GGCCCGGTCAGTATCTCAATA 59.032 52.381 0.00 0.00 0.00 1.90
534 838 3.605749 CTCACCCACCGCGGTCATT 62.606 63.158 31.80 12.54 32.17 2.57
535 839 3.124921 CACCCACCGCGGTCATTC 61.125 66.667 31.80 0.00 32.17 2.67
536 840 4.752879 ACCCACCGCGGTCATTCG 62.753 66.667 31.80 17.37 0.00 3.34
579 883 8.671028 GCTATTACGGATTTTTCCTTTTAGTGA 58.329 33.333 0.00 0.00 0.00 3.41
582 886 8.680039 TTACGGATTTTTCCTTTTAGTGAGAA 57.320 30.769 0.00 0.00 0.00 2.87
592 896 3.678056 TTTAGTGAGAAGCGATGTGGT 57.322 42.857 0.00 0.00 0.00 4.16
629 1038 7.981475 AAAAAGAACTAGCTATCTACTCCCT 57.019 36.000 0.00 0.00 0.00 4.20
630 1039 7.591421 AAAAGAACTAGCTATCTACTCCCTC 57.409 40.000 0.00 0.00 0.00 4.30
631 1040 5.251182 AGAACTAGCTATCTACTCCCTCC 57.749 47.826 0.00 0.00 0.00 4.30
632 1041 4.665957 AGAACTAGCTATCTACTCCCTCCA 59.334 45.833 0.00 0.00 0.00 3.86
633 1042 5.314841 AGAACTAGCTATCTACTCCCTCCAT 59.685 44.000 0.00 0.00 0.00 3.41
634 1043 5.608798 ACTAGCTATCTACTCCCTCCATT 57.391 43.478 0.00 0.00 0.00 3.16
635 1044 5.971493 ACTAGCTATCTACTCCCTCCATTT 58.029 41.667 0.00 0.00 0.00 2.32
636 1045 6.014012 ACTAGCTATCTACTCCCTCCATTTC 58.986 44.000 0.00 0.00 0.00 2.17
637 1046 3.829601 AGCTATCTACTCCCTCCATTTCG 59.170 47.826 0.00 0.00 0.00 3.46
638 1047 3.827302 GCTATCTACTCCCTCCATTTCGA 59.173 47.826 0.00 0.00 0.00 3.71
639 1048 4.281182 GCTATCTACTCCCTCCATTTCGAA 59.719 45.833 0.00 0.00 0.00 3.71
640 1049 5.046950 GCTATCTACTCCCTCCATTTCGAAT 60.047 44.000 0.00 0.00 0.00 3.34
641 1050 5.896073 ATCTACTCCCTCCATTTCGAATT 57.104 39.130 0.00 0.00 0.00 2.17
642 1051 6.996180 ATCTACTCCCTCCATTTCGAATTA 57.004 37.500 0.00 0.00 0.00 1.40
643 1052 6.158023 TCTACTCCCTCCATTTCGAATTAC 57.842 41.667 0.00 0.00 0.00 1.89
644 1053 5.897824 TCTACTCCCTCCATTTCGAATTACT 59.102 40.000 0.00 0.00 0.00 2.24
645 1054 5.437191 ACTCCCTCCATTTCGAATTACTT 57.563 39.130 0.00 0.00 0.00 2.24
646 1055 5.186198 ACTCCCTCCATTTCGAATTACTTG 58.814 41.667 0.00 0.00 0.00 3.16
647 1056 5.174037 TCCCTCCATTTCGAATTACTTGT 57.826 39.130 0.00 0.00 0.00 3.16
648 1057 5.183228 TCCCTCCATTTCGAATTACTTGTC 58.817 41.667 0.00 0.00 0.00 3.18
649 1058 4.034048 CCCTCCATTTCGAATTACTTGTCG 59.966 45.833 0.00 0.00 38.62 4.35
650 1059 4.494199 CCTCCATTTCGAATTACTTGTCGC 60.494 45.833 0.00 0.00 37.19 5.19
651 1060 3.997681 TCCATTTCGAATTACTTGTCGCA 59.002 39.130 0.00 0.00 37.19 5.10
652 1061 4.092821 TCCATTTCGAATTACTTGTCGCAG 59.907 41.667 0.00 0.00 37.19 5.18
653 1062 4.142902 CCATTTCGAATTACTTGTCGCAGT 60.143 41.667 0.00 0.00 37.19 4.40
654 1063 5.382303 CATTTCGAATTACTTGTCGCAGTT 58.618 37.500 0.00 0.00 37.19 3.16
655 1064 6.401688 CCATTTCGAATTACTTGTCGCAGTTA 60.402 38.462 0.00 0.00 37.19 2.24
656 1065 6.715344 TTTCGAATTACTTGTCGCAGTTAT 57.285 33.333 0.00 0.00 37.19 1.89
657 1066 5.696260 TCGAATTACTTGTCGCAGTTATG 57.304 39.130 0.00 0.00 37.19 1.90
658 1067 5.404096 TCGAATTACTTGTCGCAGTTATGA 58.596 37.500 0.00 0.00 37.19 2.15
659 1068 5.865013 TCGAATTACTTGTCGCAGTTATGAA 59.135 36.000 0.00 0.00 37.19 2.57
660 1069 6.533723 TCGAATTACTTGTCGCAGTTATGAAT 59.466 34.615 0.00 0.00 37.19 2.57
661 1070 6.624917 CGAATTACTTGTCGCAGTTATGAATG 59.375 38.462 0.00 0.00 0.00 2.67
662 1071 6.985188 ATTACTTGTCGCAGTTATGAATGT 57.015 33.333 0.00 0.00 0.00 2.71
663 1072 8.487313 AATTACTTGTCGCAGTTATGAATGTA 57.513 30.769 0.00 0.00 0.00 2.29
664 1073 8.662781 ATTACTTGTCGCAGTTATGAATGTAT 57.337 30.769 0.00 0.00 0.00 2.29
665 1074 6.589830 ACTTGTCGCAGTTATGAATGTATC 57.410 37.500 0.00 0.00 0.00 2.24
666 1075 6.341316 ACTTGTCGCAGTTATGAATGTATCT 58.659 36.000 0.00 0.00 0.00 1.98
667 1076 7.489160 ACTTGTCGCAGTTATGAATGTATCTA 58.511 34.615 0.00 0.00 0.00 1.98
668 1077 7.649705 ACTTGTCGCAGTTATGAATGTATCTAG 59.350 37.037 0.00 0.00 0.00 2.43
669 1078 7.272037 TGTCGCAGTTATGAATGTATCTAGA 57.728 36.000 0.00 0.00 0.00 2.43
670 1079 7.886338 TGTCGCAGTTATGAATGTATCTAGAT 58.114 34.615 10.73 10.73 0.00 1.98
671 1080 7.809806 TGTCGCAGTTATGAATGTATCTAGATG 59.190 37.037 15.79 0.00 0.00 2.90
672 1081 7.810282 GTCGCAGTTATGAATGTATCTAGATGT 59.190 37.037 15.79 0.00 0.00 3.06
673 1082 9.010029 TCGCAGTTATGAATGTATCTAGATGTA 57.990 33.333 15.79 4.44 0.00 2.29
674 1083 9.794685 CGCAGTTATGAATGTATCTAGATGTAT 57.205 33.333 15.79 6.61 0.00 2.29
702 1111 9.929180 TTAATTCTAGATACATCCATTTCTCCG 57.071 33.333 0.00 0.00 0.00 4.63
703 1112 7.782897 ATTCTAGATACATCCATTTCTCCGA 57.217 36.000 0.00 0.00 0.00 4.55
704 1113 6.576662 TCTAGATACATCCATTTCTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
705 1114 4.244425 AGATACATCCATTTCTCCGACG 57.756 45.455 0.00 0.00 0.00 5.12
706 1115 3.889538 AGATACATCCATTTCTCCGACGA 59.110 43.478 0.00 0.00 0.00 4.20
707 1116 2.586258 ACATCCATTTCTCCGACGAG 57.414 50.000 0.00 0.00 37.48 4.18
708 1117 1.825474 ACATCCATTTCTCCGACGAGT 59.175 47.619 0.00 0.00 37.40 4.18
709 1118 3.021695 ACATCCATTTCTCCGACGAGTA 58.978 45.455 0.00 0.00 37.40 2.59
710 1119 3.446161 ACATCCATTTCTCCGACGAGTAA 59.554 43.478 0.00 0.00 37.40 2.24
711 1120 4.099573 ACATCCATTTCTCCGACGAGTAAT 59.900 41.667 0.00 0.00 36.77 1.89
712 1121 4.730949 TCCATTTCTCCGACGAGTAATT 57.269 40.909 0.00 0.00 34.81 1.40
713 1122 5.080969 TCCATTTCTCCGACGAGTAATTT 57.919 39.130 0.00 0.00 34.81 1.82
714 1123 4.868171 TCCATTTCTCCGACGAGTAATTTG 59.132 41.667 0.00 0.00 34.81 2.32
715 1124 4.034048 CCATTTCTCCGACGAGTAATTTGG 59.966 45.833 0.00 0.00 34.81 3.28
716 1125 4.524316 TTTCTCCGACGAGTAATTTGGA 57.476 40.909 0.00 0.00 37.40 3.53
717 1126 4.524316 TTCTCCGACGAGTAATTTGGAA 57.476 40.909 0.00 0.00 37.40 3.53
718 1127 3.841643 TCTCCGACGAGTAATTTGGAAC 58.158 45.455 0.00 0.00 37.40 3.62
719 1128 3.256383 TCTCCGACGAGTAATTTGGAACA 59.744 43.478 0.00 0.00 37.40 3.18
720 1129 4.081862 TCTCCGACGAGTAATTTGGAACAT 60.082 41.667 0.00 0.00 36.19 2.71
721 1130 5.125900 TCTCCGACGAGTAATTTGGAACATA 59.874 40.000 0.00 0.00 36.19 2.29
722 1131 5.345702 TCCGACGAGTAATTTGGAACATAG 58.654 41.667 0.00 0.00 39.30 2.23
723 1132 4.506654 CCGACGAGTAATTTGGAACATAGG 59.493 45.833 0.00 0.00 39.30 2.57
724 1133 4.506654 CGACGAGTAATTTGGAACATAGGG 59.493 45.833 0.00 0.00 39.30 3.53
725 1134 5.667466 GACGAGTAATTTGGAACATAGGGA 58.333 41.667 0.00 0.00 39.30 4.20
726 1135 5.671493 ACGAGTAATTTGGAACATAGGGAG 58.329 41.667 0.00 0.00 39.30 4.30
804 1307 5.824624 ACTCCAGCACATATTATGAAACCAG 59.175 40.000 10.62 2.34 0.00 4.00
808 1311 5.297527 CAGCACATATTATGAAACCAGCTCA 59.702 40.000 10.62 0.00 0.00 4.26
871 1391 2.065993 AGAACAGTCGTGGATCGTTG 57.934 50.000 0.00 0.00 40.80 4.10
879 1399 1.069513 TCGTGGATCGTTGGTCAAACT 59.930 47.619 0.00 0.00 40.80 2.66
882 1402 3.306166 CGTGGATCGTTGGTCAAACTATC 59.694 47.826 0.00 0.00 39.24 2.08
976 1512 8.732531 CCTATAGCTTAGGTACAGCTTAGTAAG 58.267 40.741 11.06 5.47 45.82 2.34
1322 1864 4.204799 TCCAATCTCGTTATCTCCGAAGA 58.795 43.478 0.00 0.00 33.34 2.87
1417 1962 1.312815 GCTTCTGAACACTGGCAACT 58.687 50.000 0.00 0.00 37.61 3.16
1428 1973 0.389817 CTGGCAACTTCGTCATCCGA 60.390 55.000 0.00 0.00 45.66 4.55
1521 2066 2.540515 CGGATCAAATACAGCTCACGT 58.459 47.619 0.00 0.00 0.00 4.49
1587 2132 1.005569 TCTCCAGGACGCTTCTCCTTA 59.994 52.381 0.00 0.00 38.77 2.69
1620 2169 3.076785 TGGACACACCCCTCCAAATATTT 59.923 43.478 0.00 0.00 33.39 1.40
1624 2173 4.044065 ACACACCCCTCCAAATATTTCTGA 59.956 41.667 0.00 0.00 0.00 3.27
1633 2182 2.618709 CAAATATTTCTGAGGGACGGGC 59.381 50.000 0.00 0.00 0.00 6.13
1677 2228 1.537889 TGGACGGGGATCCAAGTGT 60.538 57.895 15.23 5.57 46.08 3.55
1746 2297 3.455543 TGTTCTCATCTACATGGCCATCA 59.544 43.478 17.61 5.75 0.00 3.07
1750 2301 2.027837 TCATCTACATGGCCATCATCGG 60.028 50.000 17.61 6.89 32.92 4.18
1843 2394 5.468072 CCTATTCTGGTCAGTATCACATTGC 59.532 44.000 0.00 0.00 0.00 3.56
1914 2471 2.350197 GCTGAATGCAATCGCTATGGTC 60.350 50.000 10.15 0.00 42.31 4.02
1941 2498 0.392706 CCCATATGGCTACTGCGACA 59.607 55.000 16.97 0.00 40.82 4.35
2099 2656 1.341383 GCCATGTTGGGGATGAAGTCT 60.341 52.381 0.00 0.00 38.19 3.24
2151 2708 3.253677 CAGAAGTACGTCTGAGGAGTGTT 59.746 47.826 28.37 0.00 46.76 3.32
2288 3309 1.338769 ACTGGAAAATTACGCGAGCCT 60.339 47.619 15.93 0.00 0.00 4.58
2309 3330 2.438392 TGGTGGAGAGACGCTCTATCTA 59.562 50.000 6.15 1.46 41.35 1.98
2315 3336 4.321156 GGAGAGACGCTCTATCTACGACTA 60.321 50.000 6.15 0.00 41.35 2.59
2363 3394 7.813627 ACTTTCATTTCGTCTCTTTCTACTACC 59.186 37.037 0.00 0.00 0.00 3.18
2502 3589 5.316158 AGGATTATGCTGCCAGTTCTAAT 57.684 39.130 0.00 0.00 0.00 1.73
2513 3600 6.072452 GCTGCCAGTTCTAATCAGTAGTTTTT 60.072 38.462 0.00 0.00 0.00 1.94
2548 3635 4.397103 TGCATCTCTCTTGCATGGTTAAAG 59.603 41.667 0.00 0.00 44.73 1.85
2564 3651 6.508777 TGGTTAAAGTGCAAAGGTATGTTTC 58.491 36.000 0.00 0.00 0.00 2.78
2566 3653 2.989422 AGTGCAAAGGTATGTTTCGC 57.011 45.000 0.00 0.00 0.00 4.70
2567 3654 1.539827 AGTGCAAAGGTATGTTTCGCC 59.460 47.619 0.00 0.00 0.00 5.54
2670 3766 2.689983 CCACAATATGCCCTCAGTTTCC 59.310 50.000 0.00 0.00 0.00 3.13
2671 3767 2.355756 CACAATATGCCCTCAGTTTCCG 59.644 50.000 0.00 0.00 0.00 4.30
2677 3773 0.529992 GCCCTCAGTTTCCGGTATCG 60.530 60.000 0.00 0.00 0.00 2.92
2684 3780 3.379372 TCAGTTTCCGGTATCGTCTAAGG 59.621 47.826 0.00 0.00 33.95 2.69
2686 3782 2.062971 TTCCGGTATCGTCTAAGGCT 57.937 50.000 0.00 0.00 33.95 4.58
2689 3785 2.369860 TCCGGTATCGTCTAAGGCTCTA 59.630 50.000 0.00 0.00 33.95 2.43
2690 3786 3.144506 CCGGTATCGTCTAAGGCTCTAA 58.855 50.000 0.00 0.00 33.95 2.10
2691 3787 3.188873 CCGGTATCGTCTAAGGCTCTAAG 59.811 52.174 0.00 0.00 33.95 2.18
2692 3788 3.365164 CGGTATCGTCTAAGGCTCTAAGC 60.365 52.174 0.00 0.00 41.46 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.191371 GGTGCTGCTACATTGTTAAGCTT 59.809 43.478 3.48 3.48 37.16 3.74
1 2 2.749621 GGTGCTGCTACATTGTTAAGCT 59.250 45.455 11.72 0.00 37.16 3.74
2 3 2.487762 TGGTGCTGCTACATTGTTAAGC 59.512 45.455 0.00 4.87 36.77 3.09
3 4 4.764679 TTGGTGCTGCTACATTGTTAAG 57.235 40.909 0.00 0.00 0.00 1.85
4 5 6.093495 GTCTATTGGTGCTGCTACATTGTTAA 59.907 38.462 0.00 0.00 0.00 2.01
5 6 5.584649 GTCTATTGGTGCTGCTACATTGTTA 59.415 40.000 0.00 0.00 0.00 2.41
6 7 4.396166 GTCTATTGGTGCTGCTACATTGTT 59.604 41.667 0.00 0.00 0.00 2.83
7 8 3.941483 GTCTATTGGTGCTGCTACATTGT 59.059 43.478 0.00 0.00 0.00 2.71
8 9 4.194640 AGTCTATTGGTGCTGCTACATTG 58.805 43.478 0.00 0.00 0.00 2.82
9 10 4.494091 AGTCTATTGGTGCTGCTACATT 57.506 40.909 0.00 0.00 0.00 2.71
10 11 4.651503 ACTAGTCTATTGGTGCTGCTACAT 59.348 41.667 0.00 0.00 0.00 2.29
11 12 4.023980 ACTAGTCTATTGGTGCTGCTACA 58.976 43.478 0.00 0.00 0.00 2.74
12 13 4.363999 CACTAGTCTATTGGTGCTGCTAC 58.636 47.826 0.00 0.00 0.00 3.58
13 14 3.384789 CCACTAGTCTATTGGTGCTGCTA 59.615 47.826 7.89 0.00 0.00 3.49
14 15 2.169352 CCACTAGTCTATTGGTGCTGCT 59.831 50.000 7.89 0.00 0.00 4.24
15 16 2.555199 CCACTAGTCTATTGGTGCTGC 58.445 52.381 7.89 0.00 0.00 5.25
16 17 2.169352 AGCCACTAGTCTATTGGTGCTG 59.831 50.000 15.61 0.00 31.64 4.41
17 18 2.472029 AGCCACTAGTCTATTGGTGCT 58.528 47.619 15.61 6.63 31.64 4.40
18 19 2.990066 AGCCACTAGTCTATTGGTGC 57.010 50.000 15.61 4.74 31.64 5.01
19 20 3.243434 CGGTAGCCACTAGTCTATTGGTG 60.243 52.174 15.61 4.83 31.64 4.17
20 21 2.957006 CGGTAGCCACTAGTCTATTGGT 59.043 50.000 15.61 7.15 31.64 3.67
21 22 3.220110 TCGGTAGCCACTAGTCTATTGG 58.780 50.000 11.13 11.13 0.00 3.16
22 23 4.321304 CCATCGGTAGCCACTAGTCTATTG 60.321 50.000 0.00 0.00 0.00 1.90
23 24 3.827302 CCATCGGTAGCCACTAGTCTATT 59.173 47.826 0.00 0.00 0.00 1.73
24 25 3.074094 TCCATCGGTAGCCACTAGTCTAT 59.926 47.826 0.00 0.00 0.00 1.98
25 26 2.440627 TCCATCGGTAGCCACTAGTCTA 59.559 50.000 0.00 0.00 0.00 2.59
26 27 1.214673 TCCATCGGTAGCCACTAGTCT 59.785 52.381 0.00 0.00 0.00 3.24
27 28 1.688772 TCCATCGGTAGCCACTAGTC 58.311 55.000 0.00 0.00 0.00 2.59
28 29 2.365617 CAATCCATCGGTAGCCACTAGT 59.634 50.000 0.00 0.00 0.00 2.57
29 30 2.289072 CCAATCCATCGGTAGCCACTAG 60.289 54.545 0.00 0.00 0.00 2.57
30 31 1.691976 CCAATCCATCGGTAGCCACTA 59.308 52.381 0.00 0.00 0.00 2.74
31 32 0.469917 CCAATCCATCGGTAGCCACT 59.530 55.000 0.00 0.00 0.00 4.00
32 33 1.166531 GCCAATCCATCGGTAGCCAC 61.167 60.000 0.00 0.00 0.00 5.01
33 34 1.148273 GCCAATCCATCGGTAGCCA 59.852 57.895 0.00 0.00 0.00 4.75
34 35 1.600916 GGCCAATCCATCGGTAGCC 60.601 63.158 0.00 0.00 34.01 3.93
35 36 1.961277 CGGCCAATCCATCGGTAGC 60.961 63.158 2.24 0.00 34.01 3.58
36 37 1.301716 CCGGCCAATCCATCGGTAG 60.302 63.158 2.24 0.00 37.92 3.18
37 38 2.825982 CCGGCCAATCCATCGGTA 59.174 61.111 2.24 0.00 37.92 4.02
38 39 4.875713 GCCGGCCAATCCATCGGT 62.876 66.667 18.11 0.00 43.87 4.69
39 40 4.569180 AGCCGGCCAATCCATCGG 62.569 66.667 26.15 0.00 44.70 4.18
40 41 2.974698 GAGCCGGCCAATCCATCG 60.975 66.667 26.15 0.00 34.01 3.84
41 42 2.189499 GTGAGCCGGCCAATCCATC 61.189 63.158 26.15 13.16 34.01 3.51
42 43 2.124151 GTGAGCCGGCCAATCCAT 60.124 61.111 26.15 0.94 34.01 3.41
43 44 4.424711 GGTGAGCCGGCCAATCCA 62.425 66.667 26.15 10.95 34.01 3.41
45 46 3.721370 ATGGGTGAGCCGGCCAATC 62.721 63.158 26.15 15.68 34.97 2.67
46 47 3.301222 AATGGGTGAGCCGGCCAAT 62.301 57.895 26.15 3.93 34.97 3.16
47 48 3.936772 GAATGGGTGAGCCGGCCAA 62.937 63.158 26.15 9.12 34.97 4.52
48 49 4.424711 GAATGGGTGAGCCGGCCA 62.425 66.667 26.15 18.56 34.97 5.36
49 50 3.645268 AAGAATGGGTGAGCCGGCC 62.645 63.158 26.15 15.80 34.97 6.13
50 51 2.044946 AAGAATGGGTGAGCCGGC 60.045 61.111 21.89 21.89 34.97 6.13
51 52 1.026718 GTGAAGAATGGGTGAGCCGG 61.027 60.000 0.00 0.00 34.97 6.13
52 53 1.026718 GGTGAAGAATGGGTGAGCCG 61.027 60.000 0.00 0.00 34.97 5.52
53 54 0.681243 GGGTGAAGAATGGGTGAGCC 60.681 60.000 0.00 0.00 0.00 4.70
54 55 1.026718 CGGGTGAAGAATGGGTGAGC 61.027 60.000 0.00 0.00 0.00 4.26
55 56 1.026718 GCGGGTGAAGAATGGGTGAG 61.027 60.000 0.00 0.00 0.00 3.51
56 57 1.002624 GCGGGTGAAGAATGGGTGA 60.003 57.895 0.00 0.00 0.00 4.02
57 58 1.303236 TGCGGGTGAAGAATGGGTG 60.303 57.895 0.00 0.00 0.00 4.61
58 59 1.303317 GTGCGGGTGAAGAATGGGT 60.303 57.895 0.00 0.00 0.00 4.51
59 60 1.002134 AGTGCGGGTGAAGAATGGG 60.002 57.895 0.00 0.00 0.00 4.00
60 61 1.926511 GCAGTGCGGGTGAAGAATGG 61.927 60.000 0.00 0.00 0.00 3.16
61 62 1.236616 TGCAGTGCGGGTGAAGAATG 61.237 55.000 11.20 0.00 0.00 2.67
62 63 0.957395 CTGCAGTGCGGGTGAAGAAT 60.957 55.000 16.66 0.00 0.00 2.40
63 64 1.597854 CTGCAGTGCGGGTGAAGAA 60.598 57.895 16.66 0.00 0.00 2.52
64 65 2.031012 CTGCAGTGCGGGTGAAGA 59.969 61.111 16.66 0.00 0.00 2.87
65 66 1.845809 GAACTGCAGTGCGGGTGAAG 61.846 60.000 27.18 12.26 33.63 3.02
66 67 1.891919 GAACTGCAGTGCGGGTGAA 60.892 57.895 27.18 0.00 33.63 3.18
67 68 2.280797 GAACTGCAGTGCGGGTGA 60.281 61.111 27.18 0.00 33.63 4.02
68 69 2.281070 AGAACTGCAGTGCGGGTG 60.281 61.111 27.18 11.64 33.63 4.61
69 70 2.116983 ATCAGAACTGCAGTGCGGGT 62.117 55.000 27.18 22.50 37.67 5.28
70 71 1.364626 GATCAGAACTGCAGTGCGGG 61.365 60.000 27.18 16.33 39.57 6.13
71 72 1.364626 GGATCAGAACTGCAGTGCGG 61.365 60.000 22.49 20.11 41.29 5.69
72 73 0.390866 AGGATCAGAACTGCAGTGCG 60.391 55.000 22.49 14.82 0.00 5.34
73 74 1.736681 GAAGGATCAGAACTGCAGTGC 59.263 52.381 22.49 20.13 0.00 4.40
74 75 3.331478 AGAAGGATCAGAACTGCAGTG 57.669 47.619 22.49 8.45 0.00 3.66
75 76 5.396213 GGATTAGAAGGATCAGAACTGCAGT 60.396 44.000 15.25 15.25 0.00 4.40
76 77 5.055812 GGATTAGAAGGATCAGAACTGCAG 58.944 45.833 13.48 13.48 0.00 4.41
77 78 4.718774 AGGATTAGAAGGATCAGAACTGCA 59.281 41.667 0.00 0.00 0.00 4.41
78 79 5.289083 AGGATTAGAAGGATCAGAACTGC 57.711 43.478 0.00 0.00 0.00 4.40
79 80 5.365025 TGGAGGATTAGAAGGATCAGAACTG 59.635 44.000 0.00 0.00 0.00 3.16
80 81 5.533112 TGGAGGATTAGAAGGATCAGAACT 58.467 41.667 0.00 0.00 0.00 3.01
81 82 5.741673 GCTGGAGGATTAGAAGGATCAGAAC 60.742 48.000 0.00 0.00 0.00 3.01
82 83 4.346418 GCTGGAGGATTAGAAGGATCAGAA 59.654 45.833 0.00 0.00 0.00 3.02
83 84 3.900601 GCTGGAGGATTAGAAGGATCAGA 59.099 47.826 0.00 0.00 0.00 3.27
84 85 3.007831 GGCTGGAGGATTAGAAGGATCAG 59.992 52.174 0.00 0.00 0.00 2.90
85 86 2.975489 GGCTGGAGGATTAGAAGGATCA 59.025 50.000 0.00 0.00 0.00 2.92
86 87 2.975489 TGGCTGGAGGATTAGAAGGATC 59.025 50.000 0.00 0.00 0.00 3.36
87 88 3.066208 TGGCTGGAGGATTAGAAGGAT 57.934 47.619 0.00 0.00 0.00 3.24
88 89 2.568546 TGGCTGGAGGATTAGAAGGA 57.431 50.000 0.00 0.00 0.00 3.36
89 90 3.137176 TCAATGGCTGGAGGATTAGAAGG 59.863 47.826 0.00 0.00 0.00 3.46
90 91 4.387598 CTCAATGGCTGGAGGATTAGAAG 58.612 47.826 0.00 0.00 0.00 2.85
91 92 3.434167 GCTCAATGGCTGGAGGATTAGAA 60.434 47.826 0.00 0.00 0.00 2.10
92 93 2.105477 GCTCAATGGCTGGAGGATTAGA 59.895 50.000 0.00 0.00 0.00 2.10
93 94 2.158711 TGCTCAATGGCTGGAGGATTAG 60.159 50.000 0.00 0.00 0.00 1.73
94 95 1.845791 TGCTCAATGGCTGGAGGATTA 59.154 47.619 0.00 0.00 0.00 1.75
95 96 0.627451 TGCTCAATGGCTGGAGGATT 59.373 50.000 0.00 0.00 0.00 3.01
96 97 0.851469 ATGCTCAATGGCTGGAGGAT 59.149 50.000 0.00 0.00 37.37 3.24
97 98 0.106868 CATGCTCAATGGCTGGAGGA 60.107 55.000 0.00 0.00 35.91 3.71
98 99 0.395311 ACATGCTCAATGGCTGGAGG 60.395 55.000 0.00 0.00 40.94 4.30
99 100 1.022735 GACATGCTCAATGGCTGGAG 58.977 55.000 0.00 0.00 41.63 3.86
100 101 0.394762 GGACATGCTCAATGGCTGGA 60.395 55.000 0.00 0.00 44.65 3.86
101 102 1.389609 GGGACATGCTCAATGGCTGG 61.390 60.000 0.00 0.00 44.65 4.85
102 103 0.681887 TGGGACATGCTCAATGGCTG 60.682 55.000 0.00 0.00 44.65 4.85
103 104 0.682209 GTGGGACATGCTCAATGGCT 60.682 55.000 0.00 0.00 44.65 4.75
104 105 1.811860 GTGGGACATGCTCAATGGC 59.188 57.895 0.00 0.00 44.51 4.40
105 106 0.392863 TCGTGGGACATGCTCAATGG 60.393 55.000 0.00 0.00 46.56 3.16
106 107 0.729116 GTCGTGGGACATGCTCAATG 59.271 55.000 0.00 0.00 46.56 2.82
107 108 3.159298 GTCGTGGGACATGCTCAAT 57.841 52.632 0.00 0.00 46.56 2.57
108 109 4.693532 GTCGTGGGACATGCTCAA 57.306 55.556 0.00 0.00 46.56 3.02
116 117 3.591254 GACCAGCCTGTCGTGGGAC 62.591 68.421 0.00 0.00 43.71 4.46
117 118 3.311110 GACCAGCCTGTCGTGGGA 61.311 66.667 0.00 0.00 38.25 4.37
118 119 3.302347 GAGACCAGCCTGTCGTGGG 62.302 68.421 0.00 0.00 40.26 4.61
119 120 2.262915 GAGACCAGCCTGTCGTGG 59.737 66.667 0.00 0.00 40.26 4.94
120 121 2.262915 GGAGACCAGCCTGTCGTG 59.737 66.667 0.00 0.00 40.26 4.35
121 122 3.374402 CGGAGACCAGCCTGTCGT 61.374 66.667 0.00 0.00 40.26 4.34
122 123 4.135153 CCGGAGACCAGCCTGTCG 62.135 72.222 0.00 0.00 40.26 4.35
123 124 4.459089 GCCGGAGACCAGCCTGTC 62.459 72.222 5.05 0.00 35.43 3.51
125 126 3.965539 CTTGCCGGAGACCAGCCTG 62.966 68.421 5.05 0.00 0.00 4.85
126 127 3.710722 CTTGCCGGAGACCAGCCT 61.711 66.667 5.05 0.00 0.00 4.58
128 129 4.400961 AGCTTGCCGGAGACCAGC 62.401 66.667 5.05 3.92 0.00 4.85
129 130 2.435586 CAGCTTGCCGGAGACCAG 60.436 66.667 5.05 0.00 0.00 4.00
130 131 4.020617 CCAGCTTGCCGGAGACCA 62.021 66.667 5.05 0.00 0.00 4.02
131 132 3.959991 GACCAGCTTGCCGGAGACC 62.960 68.421 5.05 0.00 0.00 3.85
132 133 2.435059 GACCAGCTTGCCGGAGAC 60.435 66.667 5.05 0.00 0.00 3.36
133 134 2.604686 AGACCAGCTTGCCGGAGA 60.605 61.111 5.05 0.00 0.00 3.71
134 135 2.125350 GAGACCAGCTTGCCGGAG 60.125 66.667 5.05 0.00 0.00 4.63
135 136 3.706373 GGAGACCAGCTTGCCGGA 61.706 66.667 5.05 0.00 0.00 5.14
136 137 4.020617 TGGAGACCAGCTTGCCGG 62.021 66.667 0.00 0.00 0.00 6.13
137 138 2.743928 GTGGAGACCAGCTTGCCG 60.744 66.667 0.00 0.00 32.34 5.69
138 139 1.673665 CAGTGGAGACCAGCTTGCC 60.674 63.158 0.00 0.00 32.34 4.52
139 140 2.331132 GCAGTGGAGACCAGCTTGC 61.331 63.158 0.00 0.00 32.34 4.01
140 141 1.673665 GGCAGTGGAGACCAGCTTG 60.674 63.158 0.00 0.00 32.34 4.01
141 142 1.708993 TTGGCAGTGGAGACCAGCTT 61.709 55.000 0.00 0.00 32.34 3.74
142 143 2.121992 CTTGGCAGTGGAGACCAGCT 62.122 60.000 0.00 0.00 32.34 4.24
143 144 1.673665 CTTGGCAGTGGAGACCAGC 60.674 63.158 0.00 0.00 32.34 4.85
144 145 1.673665 GCTTGGCAGTGGAGACCAG 60.674 63.158 0.00 0.00 32.34 4.00
145 146 2.431683 GCTTGGCAGTGGAGACCA 59.568 61.111 0.00 0.00 0.00 4.02
146 147 2.360475 GGCTTGGCAGTGGAGACC 60.360 66.667 0.00 0.00 0.00 3.85
147 148 2.743928 CGGCTTGGCAGTGGAGAC 60.744 66.667 0.00 0.00 0.00 3.36
148 149 2.818169 AACGGCTTGGCAGTGGAGA 61.818 57.895 0.00 0.00 37.01 3.71
149 150 2.281761 AACGGCTTGGCAGTGGAG 60.282 61.111 0.00 0.00 37.01 3.86
150 151 2.594303 CAACGGCTTGGCAGTGGA 60.594 61.111 0.00 0.00 37.01 4.02
151 152 3.673484 CCAACGGCTTGGCAGTGG 61.673 66.667 3.35 0.00 40.79 4.00
160 161 2.552585 CCGATGTACGACCAACGGCT 62.553 60.000 12.76 0.00 42.58 5.52
161 162 2.162754 CCGATGTACGACCAACGGC 61.163 63.158 12.76 0.00 42.58 5.68
163 164 2.502123 CGCCGATGTACGACCAACG 61.502 63.158 0.00 0.00 45.77 4.10
164 165 1.444895 ACGCCGATGTACGACCAAC 60.445 57.895 0.00 0.00 45.77 3.77
165 166 1.444724 CACGCCGATGTACGACCAA 60.445 57.895 0.00 0.00 45.77 3.67
166 167 1.304509 TACACGCCGATGTACGACCA 61.305 55.000 0.00 0.00 45.77 4.02
167 168 0.590732 CTACACGCCGATGTACGACC 60.591 60.000 0.00 0.00 45.77 4.79
168 169 0.374758 TCTACACGCCGATGTACGAC 59.625 55.000 0.00 0.00 45.77 4.34
169 170 0.374758 GTCTACACGCCGATGTACGA 59.625 55.000 0.00 0.00 45.77 3.43
170 171 0.590732 GGTCTACACGCCGATGTACG 60.591 60.000 0.00 0.00 42.18 3.67
171 172 0.452987 TGGTCTACACGCCGATGTAC 59.547 55.000 0.00 0.00 33.85 2.90
172 173 0.736636 CTGGTCTACACGCCGATGTA 59.263 55.000 0.00 0.00 33.85 2.29
173 174 1.248785 ACTGGTCTACACGCCGATGT 61.249 55.000 0.00 0.00 36.56 3.06
174 175 0.108804 AACTGGTCTACACGCCGATG 60.109 55.000 0.00 0.00 0.00 3.84
175 176 0.606604 AAACTGGTCTACACGCCGAT 59.393 50.000 0.00 0.00 0.00 4.18
176 177 0.319211 CAAACTGGTCTACACGCCGA 60.319 55.000 0.00 0.00 0.00 5.54
177 178 0.599204 ACAAACTGGTCTACACGCCG 60.599 55.000 0.00 0.00 0.00 6.46
178 179 1.145803 GACAAACTGGTCTACACGCC 58.854 55.000 0.00 0.00 34.92 5.68
179 180 1.145803 GGACAAACTGGTCTACACGC 58.854 55.000 0.00 0.00 37.91 5.34
180 181 2.519377 TGGACAAACTGGTCTACACG 57.481 50.000 0.00 0.00 37.91 4.49
181 182 4.067972 TCTTGGACAAACTGGTCTACAC 57.932 45.455 0.00 0.00 37.91 2.90
182 183 4.764050 TTCTTGGACAAACTGGTCTACA 57.236 40.909 0.00 0.00 37.91 2.74
183 184 5.763204 TCAATTCTTGGACAAACTGGTCTAC 59.237 40.000 0.00 0.00 37.91 2.59
184 185 5.935945 TCAATTCTTGGACAAACTGGTCTA 58.064 37.500 0.00 0.00 37.91 2.59
185 186 4.792068 TCAATTCTTGGACAAACTGGTCT 58.208 39.130 0.00 0.00 37.91 3.85
186 187 5.514274 TTCAATTCTTGGACAAACTGGTC 57.486 39.130 0.00 0.00 37.06 4.02
187 188 5.186797 TGTTTCAATTCTTGGACAAACTGGT 59.813 36.000 0.00 0.00 30.59 4.00
188 189 5.519927 GTGTTTCAATTCTTGGACAAACTGG 59.480 40.000 0.00 0.00 32.09 4.00
189 190 6.254157 CAGTGTTTCAATTCTTGGACAAACTG 59.746 38.462 0.00 0.00 32.09 3.16
190 191 6.332630 CAGTGTTTCAATTCTTGGACAAACT 58.667 36.000 0.00 0.00 32.09 2.66
191 192 5.519927 CCAGTGTTTCAATTCTTGGACAAAC 59.480 40.000 0.00 0.00 32.09 2.93
192 193 5.395103 CCCAGTGTTTCAATTCTTGGACAAA 60.395 40.000 0.00 0.00 32.09 2.83
193 194 4.099266 CCCAGTGTTTCAATTCTTGGACAA 59.901 41.667 0.00 0.00 32.09 3.18
194 195 3.636300 CCCAGTGTTTCAATTCTTGGACA 59.364 43.478 0.00 0.00 0.00 4.02
195 196 3.005791 CCCCAGTGTTTCAATTCTTGGAC 59.994 47.826 0.00 0.00 0.00 4.02
196 197 3.230134 CCCCAGTGTTTCAATTCTTGGA 58.770 45.455 0.00 0.00 0.00 3.53
197 198 2.965147 ACCCCAGTGTTTCAATTCTTGG 59.035 45.455 0.00 0.00 0.00 3.61
198 199 4.099266 TGAACCCCAGTGTTTCAATTCTTG 59.901 41.667 0.00 0.00 0.00 3.02
199 200 4.285863 TGAACCCCAGTGTTTCAATTCTT 58.714 39.130 0.00 0.00 0.00 2.52
200 201 3.909732 TGAACCCCAGTGTTTCAATTCT 58.090 40.909 0.00 0.00 0.00 2.40
201 202 4.368315 GTTGAACCCCAGTGTTTCAATTC 58.632 43.478 12.41 1.76 0.00 2.17
202 203 3.133901 GGTTGAACCCCAGTGTTTCAATT 59.866 43.478 2.08 0.00 30.04 2.32
203 204 2.698274 GGTTGAACCCCAGTGTTTCAAT 59.302 45.455 2.08 0.00 30.04 2.57
204 205 2.104170 GGTTGAACCCCAGTGTTTCAA 58.896 47.619 2.08 7.40 30.04 2.69
205 206 1.770294 GGTTGAACCCCAGTGTTTCA 58.230 50.000 2.08 0.00 30.04 2.69
206 207 0.666374 CGGTTGAACCCCAGTGTTTC 59.334 55.000 9.08 0.00 33.75 2.78
207 208 1.388837 GCGGTTGAACCCCAGTGTTT 61.389 55.000 9.08 0.00 33.75 2.83
208 209 1.826487 GCGGTTGAACCCCAGTGTT 60.826 57.895 9.08 0.00 33.75 3.32
209 210 2.203294 GCGGTTGAACCCCAGTGT 60.203 61.111 9.08 0.00 33.75 3.55
210 211 3.353836 CGCGGTTGAACCCCAGTG 61.354 66.667 9.08 0.00 33.75 3.66
224 225 4.935271 TATATTCTCATACGGCCGCGCG 62.935 54.545 28.58 25.67 0.00 6.86
225 226 0.736325 ATATTCTCATACGGCCGCGC 60.736 55.000 28.58 0.00 0.00 6.86
226 227 2.554806 TATATTCTCATACGGCCGCG 57.445 50.000 28.58 14.86 0.00 6.46
227 228 2.928116 GGTTATATTCTCATACGGCCGC 59.072 50.000 28.58 2.58 0.00 6.53
228 229 3.056393 TGGGTTATATTCTCATACGGCCG 60.056 47.826 26.86 26.86 0.00 6.13
229 230 4.504858 CTGGGTTATATTCTCATACGGCC 58.495 47.826 0.00 0.00 0.00 6.13
230 231 4.504858 CCTGGGTTATATTCTCATACGGC 58.495 47.826 0.00 0.00 0.00 5.68
231 232 4.504858 GCCTGGGTTATATTCTCATACGG 58.495 47.826 0.00 0.00 0.00 4.02
232 233 4.504858 GGCCTGGGTTATATTCTCATACG 58.495 47.826 0.00 0.00 0.00 3.06
233 234 4.504858 CGGCCTGGGTTATATTCTCATAC 58.495 47.826 0.00 0.00 0.00 2.39
234 235 3.517901 CCGGCCTGGGTTATATTCTCATA 59.482 47.826 0.00 0.00 0.00 2.15
235 236 2.305927 CCGGCCTGGGTTATATTCTCAT 59.694 50.000 0.00 0.00 0.00 2.90
236 237 1.697432 CCGGCCTGGGTTATATTCTCA 59.303 52.381 0.00 0.00 0.00 3.27
237 238 2.474410 CCGGCCTGGGTTATATTCTC 57.526 55.000 0.00 0.00 0.00 2.87
252 253 1.862602 CTAAACAACACTGCCCCGGC 61.863 60.000 0.00 0.00 42.35 6.13
253 254 0.250553 TCTAAACAACACTGCCCCGG 60.251 55.000 0.00 0.00 0.00 5.73
254 255 1.156736 CTCTAAACAACACTGCCCCG 58.843 55.000 0.00 0.00 0.00 5.73
255 256 1.534729 CCTCTAAACAACACTGCCCC 58.465 55.000 0.00 0.00 0.00 5.80
256 257 1.534729 CCCTCTAAACAACACTGCCC 58.465 55.000 0.00 0.00 0.00 5.36
257 258 1.534729 CCCCTCTAAACAACACTGCC 58.465 55.000 0.00 0.00 0.00 4.85
258 259 0.881796 GCCCCTCTAAACAACACTGC 59.118 55.000 0.00 0.00 0.00 4.40
259 260 1.880027 GTGCCCCTCTAAACAACACTG 59.120 52.381 0.00 0.00 0.00 3.66
260 261 1.202891 GGTGCCCCTCTAAACAACACT 60.203 52.381 0.00 0.00 0.00 3.55
261 262 1.244816 GGTGCCCCTCTAAACAACAC 58.755 55.000 0.00 0.00 0.00 3.32
262 263 0.111639 GGGTGCCCCTCTAAACAACA 59.888 55.000 3.16 0.00 41.34 3.33
263 264 0.958876 CGGGTGCCCCTCTAAACAAC 60.959 60.000 8.43 0.00 42.67 3.32
264 265 1.128809 TCGGGTGCCCCTCTAAACAA 61.129 55.000 8.43 0.00 42.67 2.83
300 301 8.682710 ACAGCTGAAAACATTTAACACTAGAAA 58.317 29.630 23.35 0.00 0.00 2.52
311 312 5.284079 GTCATGTCACAGCTGAAAACATTT 58.716 37.500 23.35 4.63 0.00 2.32
379 380 2.575279 AGGTGCTTCCATTCTCAGACAT 59.425 45.455 1.79 0.00 39.02 3.06
380 381 1.980765 AGGTGCTTCCATTCTCAGACA 59.019 47.619 1.79 0.00 39.02 3.41
384 386 3.157087 GGAAAAGGTGCTTCCATTCTCA 58.843 45.455 0.00 0.00 41.79 3.27
408 712 5.230726 GTCAAACCTATGAATGTACGTACCG 59.769 44.000 22.43 3.09 0.00 4.02
421 725 4.513692 TCAAAGTCGTTGGTCAAACCTATG 59.486 41.667 0.00 0.00 39.58 2.23
504 808 4.452455 GCGGTGGGTGAGATCTTAATATTG 59.548 45.833 0.00 0.00 0.00 1.90
508 812 1.202533 CGCGGTGGGTGAGATCTTAAT 60.203 52.381 0.00 0.00 0.00 1.40
537 841 2.284263 TAGCAAGACACAGCGATCAG 57.716 50.000 0.00 0.00 35.48 2.90
538 842 2.967599 ATAGCAAGACACAGCGATCA 57.032 45.000 0.00 0.00 35.48 2.92
539 843 3.180584 CGTAATAGCAAGACACAGCGATC 59.819 47.826 0.00 0.00 35.48 3.69
540 844 3.116300 CGTAATAGCAAGACACAGCGAT 58.884 45.455 0.00 0.00 35.48 4.58
579 883 4.572389 GTCATCATTAACCACATCGCTTCT 59.428 41.667 0.00 0.00 0.00 2.85
582 886 2.866156 CGTCATCATTAACCACATCGCT 59.134 45.455 0.00 0.00 0.00 4.93
624 1033 5.186198 ACAAGTAATTCGAAATGGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
625 1034 5.174037 ACAAGTAATTCGAAATGGAGGGA 57.826 39.130 0.00 0.00 0.00 4.20
626 1035 4.034048 CGACAAGTAATTCGAAATGGAGGG 59.966 45.833 0.00 0.00 37.43 4.30
627 1036 4.494199 GCGACAAGTAATTCGAAATGGAGG 60.494 45.833 0.00 0.00 37.43 4.30
628 1037 4.092821 TGCGACAAGTAATTCGAAATGGAG 59.907 41.667 0.00 0.00 37.43 3.86
629 1038 3.997681 TGCGACAAGTAATTCGAAATGGA 59.002 39.130 0.00 0.00 37.43 3.41
630 1039 4.142902 ACTGCGACAAGTAATTCGAAATGG 60.143 41.667 0.00 0.00 37.43 3.16
631 1040 4.957971 ACTGCGACAAGTAATTCGAAATG 58.042 39.130 0.00 0.00 37.43 2.32
632 1041 5.607119 AACTGCGACAAGTAATTCGAAAT 57.393 34.783 0.00 0.00 37.43 2.17
633 1042 6.366604 TCATAACTGCGACAAGTAATTCGAAA 59.633 34.615 0.00 0.00 37.43 3.46
634 1043 5.865013 TCATAACTGCGACAAGTAATTCGAA 59.135 36.000 0.00 0.00 37.43 3.71
635 1044 5.404096 TCATAACTGCGACAAGTAATTCGA 58.596 37.500 0.00 0.00 37.43 3.71
636 1045 5.696260 TCATAACTGCGACAAGTAATTCG 57.304 39.130 0.00 0.00 38.31 3.34
637 1046 7.464358 ACATTCATAACTGCGACAAGTAATTC 58.536 34.615 0.00 0.00 0.00 2.17
638 1047 7.377766 ACATTCATAACTGCGACAAGTAATT 57.622 32.000 0.00 0.00 0.00 1.40
639 1048 6.985188 ACATTCATAACTGCGACAAGTAAT 57.015 33.333 0.00 0.00 0.00 1.89
640 1049 7.979537 AGATACATTCATAACTGCGACAAGTAA 59.020 33.333 0.00 0.00 0.00 2.24
641 1050 7.489160 AGATACATTCATAACTGCGACAAGTA 58.511 34.615 0.00 0.00 0.00 2.24
642 1051 6.341316 AGATACATTCATAACTGCGACAAGT 58.659 36.000 0.00 0.00 0.00 3.16
643 1052 6.834959 AGATACATTCATAACTGCGACAAG 57.165 37.500 0.00 0.00 0.00 3.16
644 1053 7.712797 TCTAGATACATTCATAACTGCGACAA 58.287 34.615 0.00 0.00 0.00 3.18
645 1054 7.272037 TCTAGATACATTCATAACTGCGACA 57.728 36.000 0.00 0.00 0.00 4.35
646 1055 7.810282 ACATCTAGATACATTCATAACTGCGAC 59.190 37.037 4.54 0.00 0.00 5.19
647 1056 7.886338 ACATCTAGATACATTCATAACTGCGA 58.114 34.615 4.54 0.00 0.00 5.10
648 1057 9.794685 ATACATCTAGATACATTCATAACTGCG 57.205 33.333 4.54 0.00 0.00 5.18
676 1085 9.929180 CGGAGAAATGGATGTATCTAGAATTAA 57.071 33.333 0.00 0.00 0.00 1.40
677 1086 9.309224 TCGGAGAAATGGATGTATCTAGAATTA 57.691 33.333 0.00 0.00 0.00 1.40
678 1087 8.091449 GTCGGAGAAATGGATGTATCTAGAATT 58.909 37.037 0.00 0.00 39.69 2.17
679 1088 7.575909 CGTCGGAGAAATGGATGTATCTAGAAT 60.576 40.741 0.00 0.00 39.69 2.40
680 1089 6.294010 CGTCGGAGAAATGGATGTATCTAGAA 60.294 42.308 0.00 0.00 39.69 2.10
681 1090 5.181433 CGTCGGAGAAATGGATGTATCTAGA 59.819 44.000 0.00 0.00 39.69 2.43
682 1091 5.181433 TCGTCGGAGAAATGGATGTATCTAG 59.819 44.000 0.00 0.00 39.69 2.43
683 1092 5.067954 TCGTCGGAGAAATGGATGTATCTA 58.932 41.667 0.00 0.00 39.69 1.98
684 1093 3.889538 TCGTCGGAGAAATGGATGTATCT 59.110 43.478 0.00 0.00 39.69 1.98
685 1094 4.230657 CTCGTCGGAGAAATGGATGTATC 58.769 47.826 0.00 0.00 43.27 2.24
686 1095 3.637229 ACTCGTCGGAGAAATGGATGTAT 59.363 43.478 0.00 0.00 43.27 2.29
687 1096 3.021695 ACTCGTCGGAGAAATGGATGTA 58.978 45.455 0.00 0.00 43.27 2.29
688 1097 1.825474 ACTCGTCGGAGAAATGGATGT 59.175 47.619 0.00 0.00 43.27 3.06
689 1098 2.586258 ACTCGTCGGAGAAATGGATG 57.414 50.000 0.00 0.00 43.27 3.51
690 1099 4.939052 ATTACTCGTCGGAGAAATGGAT 57.061 40.909 0.00 0.00 43.27 3.41
691 1100 4.730949 AATTACTCGTCGGAGAAATGGA 57.269 40.909 0.00 0.00 43.27 3.41
692 1101 4.034048 CCAAATTACTCGTCGGAGAAATGG 59.966 45.833 0.00 0.00 43.27 3.16
693 1102 4.868171 TCCAAATTACTCGTCGGAGAAATG 59.132 41.667 0.00 0.00 43.27 2.32
694 1103 5.080969 TCCAAATTACTCGTCGGAGAAAT 57.919 39.130 0.00 0.00 43.27 2.17
695 1104 4.524316 TCCAAATTACTCGTCGGAGAAA 57.476 40.909 0.00 0.00 43.27 2.52
696 1105 4.240096 GTTCCAAATTACTCGTCGGAGAA 58.760 43.478 0.00 0.00 43.27 2.87
697 1106 3.256383 TGTTCCAAATTACTCGTCGGAGA 59.744 43.478 0.00 0.00 43.27 3.71
698 1107 3.581755 TGTTCCAAATTACTCGTCGGAG 58.418 45.455 0.00 0.00 46.13 4.63
699 1108 3.663995 TGTTCCAAATTACTCGTCGGA 57.336 42.857 0.00 0.00 0.00 4.55
700 1109 4.506654 CCTATGTTCCAAATTACTCGTCGG 59.493 45.833 0.00 0.00 0.00 4.79
701 1110 4.506654 CCCTATGTTCCAAATTACTCGTCG 59.493 45.833 0.00 0.00 0.00 5.12
702 1111 5.667466 TCCCTATGTTCCAAATTACTCGTC 58.333 41.667 0.00 0.00 0.00 4.20
703 1112 5.189145 ACTCCCTATGTTCCAAATTACTCGT 59.811 40.000 0.00 0.00 0.00 4.18
704 1113 5.671493 ACTCCCTATGTTCCAAATTACTCG 58.329 41.667 0.00 0.00 0.00 4.18
705 1114 7.793036 ACTACTCCCTATGTTCCAAATTACTC 58.207 38.462 0.00 0.00 0.00 2.59
706 1115 7.402071 TGACTACTCCCTATGTTCCAAATTACT 59.598 37.037 0.00 0.00 0.00 2.24
707 1116 7.562135 TGACTACTCCCTATGTTCCAAATTAC 58.438 38.462 0.00 0.00 0.00 1.89
708 1117 7.635089 GCTGACTACTCCCTATGTTCCAAATTA 60.635 40.741 0.00 0.00 0.00 1.40
709 1118 6.636454 TGACTACTCCCTATGTTCCAAATT 57.364 37.500 0.00 0.00 0.00 1.82
710 1119 5.396884 GCTGACTACTCCCTATGTTCCAAAT 60.397 44.000 0.00 0.00 0.00 2.32
711 1120 4.081087 GCTGACTACTCCCTATGTTCCAAA 60.081 45.833 0.00 0.00 0.00 3.28
712 1121 3.451178 GCTGACTACTCCCTATGTTCCAA 59.549 47.826 0.00 0.00 0.00 3.53
713 1122 3.031736 GCTGACTACTCCCTATGTTCCA 58.968 50.000 0.00 0.00 0.00 3.53
714 1123 3.031736 TGCTGACTACTCCCTATGTTCC 58.968 50.000 0.00 0.00 0.00 3.62
715 1124 3.702045 ACTGCTGACTACTCCCTATGTTC 59.298 47.826 0.00 0.00 0.00 3.18
716 1125 3.449018 CACTGCTGACTACTCCCTATGTT 59.551 47.826 0.00 0.00 0.00 2.71
717 1126 3.027412 CACTGCTGACTACTCCCTATGT 58.973 50.000 0.00 0.00 0.00 2.29
718 1127 3.291584 TCACTGCTGACTACTCCCTATG 58.708 50.000 0.00 0.00 0.00 2.23
719 1128 3.671740 TCACTGCTGACTACTCCCTAT 57.328 47.619 0.00 0.00 0.00 2.57
720 1129 3.291584 CATCACTGCTGACTACTCCCTA 58.708 50.000 0.00 0.00 0.00 3.53
721 1130 2.106566 CATCACTGCTGACTACTCCCT 58.893 52.381 0.00 0.00 0.00 4.20
722 1131 1.137872 CCATCACTGCTGACTACTCCC 59.862 57.143 0.00 0.00 0.00 4.30
723 1132 1.827969 ACCATCACTGCTGACTACTCC 59.172 52.381 0.00 0.00 0.00 3.85
724 1133 2.417924 CCACCATCACTGCTGACTACTC 60.418 54.545 0.00 0.00 0.00 2.59
725 1134 1.552337 CCACCATCACTGCTGACTACT 59.448 52.381 0.00 0.00 0.00 2.57
726 1135 2.009042 GCCACCATCACTGCTGACTAC 61.009 57.143 0.00 0.00 0.00 2.73
804 1307 4.142534 TGCAAAGAGAATGCTACAATGAGC 60.143 41.667 0.00 0.00 44.14 4.26
808 1311 8.229253 TGATAATGCAAAGAGAATGCTACAAT 57.771 30.769 0.00 0.00 44.14 2.71
976 1512 9.736023 CATCAATTGGTTAGGCTAAAATCTTAC 57.264 33.333 8.86 0.00 0.00 2.34
1009 1545 3.745803 GCAGCAAGCCAGAGCCAC 61.746 66.667 0.00 0.00 41.25 5.01
1322 1864 0.249741 GACACGGCCGCCACTATTAT 60.250 55.000 28.58 0.00 0.00 1.28
1428 1973 1.738830 CGTGGTACCGTTTGCCGAT 60.739 57.895 7.57 0.00 39.56 4.18
1521 2066 0.101219 CCAGATGATCGCGAGTGTCA 59.899 55.000 16.66 14.49 0.00 3.58
1575 2120 1.597461 GCCACCTAAGGAGAAGCGT 59.403 57.895 0.00 0.00 0.00 5.07
1598 2143 1.748732 TATTTGGAGGGGTGTGTCCA 58.251 50.000 0.00 0.00 41.29 4.02
1620 2169 2.363018 CTCTGCCCGTCCCTCAGA 60.363 66.667 0.00 0.00 35.74 3.27
1624 2173 3.710722 CAAGCTCTGCCCGTCCCT 61.711 66.667 0.00 0.00 0.00 4.20
1633 2182 0.737715 GCTACGGTCACCAAGCTCTG 60.738 60.000 10.40 0.00 31.81 3.35
1677 2228 3.888930 AGCTGTTGTTGGCTAAAGCTAAA 59.111 39.130 5.05 0.00 43.04 1.85
1728 2279 3.259902 CGATGATGGCCATGTAGATGAG 58.740 50.000 26.56 2.08 35.17 2.90
1746 2297 0.107703 ATGTCATCACCGTTGCCGAT 60.108 50.000 0.00 0.00 35.63 4.18
1750 2301 3.198068 ACATAGATGTCATCACCGTTGC 58.802 45.455 15.20 0.00 35.87 4.17
1763 2314 7.338957 TCAGAGAGGCTATATGTGACATAGATG 59.661 40.741 11.32 4.97 0.00 2.90
1843 2394 1.478510 ACAACCTGCTACTCCAGATCG 59.521 52.381 0.00 0.00 34.77 3.69
1941 2498 0.824759 GGGATAGGCACGACTGTCTT 59.175 55.000 6.21 0.00 33.15 3.01
2099 2656 3.181511 CGACAAGCGCAAATTTATCTGGA 60.182 43.478 11.47 0.00 0.00 3.86
2244 2804 3.052262 TCAATCAAATCCCCAGCCCATAA 60.052 43.478 0.00 0.00 0.00 1.90
2288 3309 1.213182 AGATAGAGCGTCTCTCCACCA 59.787 52.381 11.80 0.00 40.34 4.17
2309 3330 3.510846 CGGCTACCTGCTAGTCGT 58.489 61.111 0.00 0.00 44.24 4.34
2325 3354 2.507339 ATGAAAGTTTGTTGCCACCG 57.493 45.000 0.00 0.00 0.00 4.94
2363 3394 8.110002 GCAAAGACAGTAAAAATGACAAAACTG 58.890 33.333 0.00 0.00 40.08 3.16
2400 3486 9.566432 AGAAAAAGAAGATGACTGATACAACTT 57.434 29.630 0.00 0.00 34.15 2.66
2439 3526 4.072131 CCTTTTACCTGCGCCATACATAT 58.928 43.478 4.18 0.00 0.00 1.78
2513 3600 3.320256 AGAGAGATGCATATGACTGCGAA 59.680 43.478 6.97 0.00 45.30 4.70
2517 3604 4.994220 GCAAGAGAGATGCATATGACTG 57.006 45.455 6.97 0.00 43.29 3.51
2548 3635 1.727857 CGGCGAAACATACCTTTGCAC 60.728 52.381 0.00 0.00 35.25 4.57
2564 3651 5.526010 AACTTGTTTAAGTAGATTCGGCG 57.474 39.130 0.00 0.00 46.14 6.46
2621 3716 9.911788 AGTAGATGATGAATTCCAAGTTATGTT 57.088 29.630 2.27 0.00 0.00 2.71
2641 3737 5.155161 TGAGGGCATATTGTGGTAGTAGAT 58.845 41.667 0.00 0.00 0.00 1.98
2670 3766 3.365164 GCTTAGAGCCTTAGACGATACCG 60.365 52.174 0.00 0.00 37.22 4.02
2671 3767 4.163458 GCTTAGAGCCTTAGACGATACC 57.837 50.000 0.00 0.00 34.48 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.