Multiple sequence alignment - TraesCS5A01G350900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G350900 chr5A 100.000 2677 0 0 1 2677 553480575 553477899 0.000000e+00 4944
1 TraesCS5A01G350900 chr5A 81.789 615 94 15 758 1361 553491200 553490593 1.430000e-137 499
2 TraesCS5A01G350900 chr5A 93.333 285 19 0 2393 2677 349368957 349368673 3.190000e-114 422
3 TraesCS5A01G350900 chr5B 90.298 2319 175 31 1 2309 533019084 533016806 0.000000e+00 2990
4 TraesCS5A01G350900 chr5B 80.745 1127 183 24 262 1362 533035457 533034339 0.000000e+00 848
5 TraesCS5A01G350900 chr5B 77.252 1099 215 24 278 1355 532550011 532551095 1.760000e-171 612
6 TraesCS5A01G350900 chr5B 76.678 1132 217 39 251 1361 533509295 533508190 3.840000e-163 584
7 TraesCS5A01G350900 chr5D 93.952 744 40 2 223 961 438433469 438432726 0.000000e+00 1120
8 TraesCS5A01G350900 chr5D 81.289 1117 185 19 262 1362 438438827 438437719 0.000000e+00 883
9 TraesCS5A01G350900 chr5D 84.444 630 42 28 1523 2142 438432689 438432106 1.080000e-158 569
10 TraesCS5A01G350900 chr5D 76.542 989 209 14 329 1301 438056790 438057771 1.100000e-143 520
11 TraesCS5A01G350900 chr5D 93.684 285 17 1 2393 2676 236449344 236449628 2.460000e-115 425
12 TraesCS5A01G350900 chr5D 93.684 285 17 1 2394 2677 507863220 507863504 2.460000e-115 425
13 TraesCS5A01G350900 chr2A 79.946 1112 194 19 269 1362 14721224 14720124 0.000000e+00 791
14 TraesCS5A01G350900 chr2A 79.769 1038 171 30 343 1361 14740604 14739587 0.000000e+00 717
15 TraesCS5A01G350900 chr2A 78.292 1124 211 26 257 1361 14730566 14729457 0.000000e+00 693
16 TraesCS5A01G350900 chr2A 79.639 997 170 20 372 1348 14703614 14702631 0.000000e+00 686
17 TraesCS5A01G350900 chr2D 79.874 1113 191 25 269 1362 12632550 12631452 0.000000e+00 784
18 TraesCS5A01G350900 chr2B 79.483 1121 193 28 257 1355 20146447 20147552 0.000000e+00 761
19 TraesCS5A01G350900 chr7D 75.144 1392 268 53 372 1712 101738443 101739807 1.380000e-162 582
20 TraesCS5A01G350900 chr7D 95.789 285 11 1 2393 2677 567794732 567795015 2.430000e-125 459
21 TraesCS5A01G350900 chr7D 93.750 288 15 2 2393 2677 616553187 616552900 1.900000e-116 429
22 TraesCS5A01G350900 chr1A 96.140 285 9 2 2394 2677 25680740 25680457 5.220000e-127 464
23 TraesCS5A01G350900 chr7A 95.789 285 12 0 2393 2677 696875314 696875598 6.750000e-126 460
24 TraesCS5A01G350900 chr7A 94.386 285 16 0 2393 2677 696944776 696945060 3.160000e-119 438
25 TraesCS5A01G350900 chr7A 88.660 97 11 0 372 468 105503899 105503995 4.680000e-23 119
26 TraesCS5A01G350900 chr3A 95.105 286 13 1 2393 2677 32830677 32830962 1.460000e-122 449


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G350900 chr5A 553477899 553480575 2676 True 4944.0 4944 100.000 1 2677 1 chr5A.!!$R2 2676
1 TraesCS5A01G350900 chr5A 553490593 553491200 607 True 499.0 499 81.789 758 1361 1 chr5A.!!$R3 603
2 TraesCS5A01G350900 chr5B 533016806 533019084 2278 True 2990.0 2990 90.298 1 2309 1 chr5B.!!$R1 2308
3 TraesCS5A01G350900 chr5B 533034339 533035457 1118 True 848.0 848 80.745 262 1362 1 chr5B.!!$R2 1100
4 TraesCS5A01G350900 chr5B 532550011 532551095 1084 False 612.0 612 77.252 278 1355 1 chr5B.!!$F1 1077
5 TraesCS5A01G350900 chr5B 533508190 533509295 1105 True 584.0 584 76.678 251 1361 1 chr5B.!!$R3 1110
6 TraesCS5A01G350900 chr5D 438437719 438438827 1108 True 883.0 883 81.289 262 1362 1 chr5D.!!$R1 1100
7 TraesCS5A01G350900 chr5D 438432106 438433469 1363 True 844.5 1120 89.198 223 2142 2 chr5D.!!$R2 1919
8 TraesCS5A01G350900 chr5D 438056790 438057771 981 False 520.0 520 76.542 329 1301 1 chr5D.!!$F2 972
9 TraesCS5A01G350900 chr2A 14720124 14721224 1100 True 791.0 791 79.946 269 1362 1 chr2A.!!$R2 1093
10 TraesCS5A01G350900 chr2A 14739587 14740604 1017 True 717.0 717 79.769 343 1361 1 chr2A.!!$R4 1018
11 TraesCS5A01G350900 chr2A 14729457 14730566 1109 True 693.0 693 78.292 257 1361 1 chr2A.!!$R3 1104
12 TraesCS5A01G350900 chr2A 14702631 14703614 983 True 686.0 686 79.639 372 1348 1 chr2A.!!$R1 976
13 TraesCS5A01G350900 chr2D 12631452 12632550 1098 True 784.0 784 79.874 269 1362 1 chr2D.!!$R1 1093
14 TraesCS5A01G350900 chr2B 20146447 20147552 1105 False 761.0 761 79.483 257 1355 1 chr2B.!!$F1 1098
15 TraesCS5A01G350900 chr7D 101738443 101739807 1364 False 582.0 582 75.144 372 1712 1 chr7D.!!$F1 1340

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 986 1.35135 GGGACTTCTTTACCTGCACCT 59.649 52.381 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 2553 0.109913 ATGCCTGCACGGATCATGAT 59.89 50.0 8.25 8.25 33.16 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.368213 ACTCGAAAATTGACGTGTTTAATCC 58.632 36.000 0.00 0.00 33.63 3.01
46 47 4.019681 TGACGTGTTTAATCCAGGGAGAAT 60.020 41.667 0.00 0.00 0.00 2.40
104 105 2.076100 TCAAGCGATGACCACATTGTC 58.924 47.619 0.00 0.00 39.41 3.18
124 125 3.372206 GTCATCTCGATGGTTTCCACAAG 59.628 47.826 7.03 0.00 39.24 3.16
142 143 5.600484 CCACAAGGAGAGAAGTAGACCATAT 59.400 44.000 0.00 0.00 36.89 1.78
200 201 9.208022 CAGAAATAATAGACTGACACAAGTGAA 57.792 33.333 7.28 0.00 32.90 3.18
218 219 5.641155 AGTGAATTTAGGGGTAAAGCAACT 58.359 37.500 0.00 0.00 0.00 3.16
303 305 4.991056 GGCAAGAAAGAAAATGGGAGAAAC 59.009 41.667 0.00 0.00 0.00 2.78
534 559 9.638176 ATCAAGAGATTTGGAAGCTAATGTAAT 57.362 29.630 0.00 0.00 0.00 1.89
592 618 4.497291 TGTTAGGTGGTCAAGAAGTTGT 57.503 40.909 0.00 0.00 34.98 3.32
676 702 6.164417 TCTAATTGCCAAATTGCAGCATAT 57.836 33.333 0.00 0.00 43.21 1.78
714 740 2.112297 GGTGTTGTGCGGAGGGAA 59.888 61.111 0.00 0.00 0.00 3.97
812 845 5.722021 ACACACCATGATTCCCTAAAAAC 57.278 39.130 0.00 0.00 0.00 2.43
936 986 1.351350 GGGACTTCTTTACCTGCACCT 59.649 52.381 0.00 0.00 0.00 4.00
1080 1131 3.987547 TGCAAATACCCAACATGTTGTG 58.012 40.909 31.20 25.03 38.85 3.33
1090 1141 4.078537 CCAACATGTTGTGGGAACATAGA 58.921 43.478 31.20 0.00 44.46 1.98
1111 1166 9.775854 CATAGAGAGTATCCTTTGAAACATCAT 57.224 33.333 0.00 0.00 33.66 2.45
1158 1223 9.787532 GCTCTAATACATTAACTTTTGCAATCA 57.212 29.630 0.00 0.00 0.00 2.57
1223 1288 4.283722 GGAAGGTGTCTTCTCTACCAAGAA 59.716 45.833 6.16 0.00 46.42 2.52
1226 1291 4.841246 AGGTGTCTTCTCTACCAAGAATGT 59.159 41.667 0.00 0.00 36.94 2.71
1246 1311 3.187700 GTTGTCTATAGCTTCGGTGTGG 58.812 50.000 0.00 0.00 0.00 4.17
1363 1428 9.265901 CAAGAGTTCTCTCAAGTTCTATTTTCA 57.734 33.333 2.69 0.00 42.66 2.69
1368 1433 9.818796 GTTCTCTCAAGTTCTATTTTCATCAAC 57.181 33.333 0.00 0.00 0.00 3.18
1373 1438 8.781067 TCAAGTTCTATTTTCATCAACAAACG 57.219 30.769 0.00 0.00 0.00 3.60
1394 1488 9.917139 CAAACGAAACAAAAATAATACGATGTC 57.083 29.630 0.00 0.00 0.00 3.06
1408 1502 7.931578 AATACGATGTCCTTGGTTATTTCAA 57.068 32.000 0.00 0.00 0.00 2.69
1412 1506 5.643777 CGATGTCCTTGGTTATTTCAAGTCT 59.356 40.000 0.00 0.00 39.78 3.24
1436 1530 3.435169 GGAATATGTGGAAGGAAGGGGAC 60.435 52.174 0.00 0.00 0.00 4.46
1459 1553 1.689273 AGAGAAACTGCCAGACTCGTT 59.311 47.619 0.00 0.00 33.53 3.85
1472 1566 2.828520 AGACTCGTTGATCATGGACACT 59.171 45.455 0.00 0.00 0.00 3.55
1490 1584 9.510402 ATGGACACTTGTTCACTAGACGAAGTT 62.510 40.741 0.00 0.00 37.30 2.66
1512 1606 0.734889 GCTTTGCATCCATGTAGCGT 59.265 50.000 0.00 0.00 0.00 5.07
1535 1629 0.462937 TGTGTGTCCAAGACAACCCG 60.463 55.000 0.00 0.00 44.49 5.28
1536 1630 1.525077 TGTGTCCAAGACAACCCGC 60.525 57.895 0.00 0.00 44.49 6.13
1545 1639 1.204146 AGACAACCCGCATGATAGGT 58.796 50.000 0.00 0.00 34.60 3.08
1604 1698 2.776526 ACCACACTTCCAGCCCCA 60.777 61.111 0.00 0.00 0.00 4.96
1652 1746 0.939106 GCGTTGAAGCGGTGCAAATT 60.939 50.000 10.17 0.00 0.00 1.82
1717 1812 5.534654 CGAGATAGAGGGGAGATGATATTCC 59.465 48.000 0.00 0.00 0.00 3.01
1718 1813 5.454062 AGATAGAGGGGAGATGATATTCCG 58.546 45.833 0.00 0.00 34.17 4.30
1719 1814 3.835478 AGAGGGGAGATGATATTCCGA 57.165 47.619 0.00 0.00 34.17 4.55
1720 1815 3.436243 AGAGGGGAGATGATATTCCGAC 58.564 50.000 0.00 0.00 34.17 4.79
1721 1816 3.076785 AGAGGGGAGATGATATTCCGACT 59.923 47.826 0.00 0.00 34.17 4.18
1722 1817 3.835395 GAGGGGAGATGATATTCCGACTT 59.165 47.826 0.00 0.00 34.17 3.01
1723 1818 3.835395 AGGGGAGATGATATTCCGACTTC 59.165 47.826 0.00 0.00 34.17 3.01
1724 1819 3.578716 GGGGAGATGATATTCCGACTTCA 59.421 47.826 0.00 0.00 34.17 3.02
1725 1820 4.223923 GGGGAGATGATATTCCGACTTCAT 59.776 45.833 0.00 0.00 34.17 2.57
1726 1821 5.174395 GGGAGATGATATTCCGACTTCATG 58.826 45.833 0.00 0.00 34.17 3.07
1727 1822 5.279708 GGGAGATGATATTCCGACTTCATGT 60.280 44.000 0.00 0.00 34.17 3.21
1728 1823 6.226787 GGAGATGATATTCCGACTTCATGTT 58.773 40.000 0.00 0.00 0.00 2.71
1729 1824 6.708054 GGAGATGATATTCCGACTTCATGTTT 59.292 38.462 0.00 0.00 0.00 2.83
1730 1825 7.227512 GGAGATGATATTCCGACTTCATGTTTT 59.772 37.037 0.00 0.00 0.00 2.43
1731 1826 8.511604 AGATGATATTCCGACTTCATGTTTTT 57.488 30.769 0.00 0.00 0.00 1.94
1767 1862 3.961477 TCATGTGTTGTTTGGAAGTCG 57.039 42.857 0.00 0.00 0.00 4.18
1782 1880 3.440228 GAAGTCGCTATCTCTGGTTGTC 58.560 50.000 0.00 0.00 0.00 3.18
1792 1890 7.307751 CGCTATCTCTGGTTGTCTTTTGTTTTA 60.308 37.037 0.00 0.00 0.00 1.52
1799 1897 7.123547 TCTGGTTGTCTTTTGTTTTATGTTCCT 59.876 33.333 0.00 0.00 0.00 3.36
1801 1899 7.762159 TGGTTGTCTTTTGTTTTATGTTCCTTC 59.238 33.333 0.00 0.00 0.00 3.46
1805 1903 9.936759 TGTCTTTTGTTTTATGTTCCTTCTTTT 57.063 25.926 0.00 0.00 0.00 2.27
1831 1935 0.036010 ATCACAGCCTCGGTTTGGAG 60.036 55.000 0.00 0.00 0.00 3.86
1845 1950 5.247564 TCGGTTTGGAGAAGAAAGGAAGATA 59.752 40.000 0.00 0.00 0.00 1.98
1852 1957 6.445139 TGGAGAAGAAAGGAAGATATCAAGGT 59.555 38.462 5.32 0.00 0.00 3.50
1978 2085 1.144969 TTTCTGCGACAACGATCCAC 58.855 50.000 0.00 0.00 42.66 4.02
1994 2101 0.819582 CCACCCCGTGTACGTAAGAT 59.180 55.000 0.00 0.00 43.62 2.40
2024 2131 1.668793 CTGTCGTGGAGTGCATGCA 60.669 57.895 18.46 18.46 0.00 3.96
2033 2144 3.566742 GTGGAGTGCATGCATTCATATGA 59.433 43.478 35.03 16.32 34.86 2.15
2062 2173 2.607187 AGTCTAAACCGCAAGTCATCG 58.393 47.619 0.00 0.00 0.00 3.84
2067 2178 3.017323 CCGCAAGTCATCGGCATC 58.983 61.111 0.00 0.00 39.14 3.91
2068 2179 2.622629 CGCAAGTCATCGGCATCG 59.377 61.111 0.00 0.00 37.82 3.84
2069 2180 2.874694 CGCAAGTCATCGGCATCGG 61.875 63.158 0.00 0.00 36.95 4.18
2070 2181 3.017323 CAAGTCATCGGCATCGGC 58.983 61.111 0.00 0.00 40.13 5.54
2071 2182 1.815003 CAAGTCATCGGCATCGGCA 60.815 57.895 0.00 0.00 43.71 5.69
2072 2183 1.146930 AAGTCATCGGCATCGGCAT 59.853 52.632 0.00 0.00 43.71 4.40
2073 2184 0.464373 AAGTCATCGGCATCGGCATT 60.464 50.000 0.00 0.00 43.71 3.56
2074 2185 1.162181 AGTCATCGGCATCGGCATTG 61.162 55.000 0.00 0.00 43.71 2.82
2104 2215 5.526111 GCCATTTGATGAATTTCCATCCAAG 59.474 40.000 5.04 0.00 41.60 3.61
2108 2219 5.943349 TGATGAATTTCCATCCAAGCATT 57.057 34.783 5.04 0.00 41.60 3.56
2127 2238 1.080434 GTGGGCGACTCTCTGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
2144 2255 8.035394 TCTCTGTGACTACAAGGTGATTTAATC 58.965 37.037 0.00 0.00 36.14 1.75
2150 2261 7.016153 ACTACAAGGTGATTTAATCTGGTCA 57.984 36.000 6.50 0.00 0.00 4.02
2151 2262 7.106239 ACTACAAGGTGATTTAATCTGGTCAG 58.894 38.462 6.50 0.00 0.00 3.51
2164 2275 6.760440 AATCTGGTCAGATCTATGAATGGT 57.240 37.500 13.16 0.00 46.75 3.55
2168 2279 6.385176 TCTGGTCAGATCTATGAATGGTTTCT 59.615 38.462 0.00 0.00 30.78 2.52
2213 2324 0.539986 ATCACCAGATTTACGCCGGT 59.460 50.000 1.90 0.00 0.00 5.28
2217 2328 3.575256 TCACCAGATTTACGCCGGTATAT 59.425 43.478 1.90 0.00 0.00 0.86
2218 2329 4.766373 TCACCAGATTTACGCCGGTATATA 59.234 41.667 1.90 0.00 0.00 0.86
2219 2330 4.860907 CACCAGATTTACGCCGGTATATAC 59.139 45.833 1.90 4.14 0.00 1.47
2220 2331 4.523943 ACCAGATTTACGCCGGTATATACA 59.476 41.667 14.70 0.00 0.00 2.29
2221 2332 5.010922 ACCAGATTTACGCCGGTATATACAA 59.989 40.000 14.70 0.00 0.00 2.41
2222 2333 5.575606 CCAGATTTACGCCGGTATATACAAG 59.424 44.000 14.70 7.74 0.00 3.16
2223 2334 5.061808 CAGATTTACGCCGGTATATACAAGC 59.938 44.000 14.70 14.10 0.00 4.01
2224 2335 4.589216 TTTACGCCGGTATATACAAGCT 57.411 40.909 14.70 8.63 0.00 3.74
2225 2336 5.703978 TTTACGCCGGTATATACAAGCTA 57.296 39.130 14.70 7.85 0.00 3.32
2231 2342 7.591165 ACGCCGGTATATACAAGCTATATATG 58.409 38.462 14.70 1.54 0.00 1.78
2259 2370 4.438744 GCCTATACTTTGTTGTGTGCATCC 60.439 45.833 0.00 0.00 0.00 3.51
2263 2374 2.358898 ACTTTGTTGTGTGCATCCACTC 59.641 45.455 8.70 3.54 42.54 3.51
2275 2386 1.033746 ATCCACTCATGCAAAGGCCG 61.034 55.000 0.00 0.00 40.13 6.13
2280 2391 2.361610 CATGCAAAGGCCGGGAGT 60.362 61.111 2.18 0.00 40.13 3.85
2286 2397 0.878961 CAAAGGCCGGGAGTATACGC 60.879 60.000 2.18 0.00 0.00 4.42
2289 2400 2.028631 GCCGGGAGTATACGCACC 59.971 66.667 2.18 8.29 0.00 5.01
2292 2403 1.658673 CGGGAGTATACGCACCCTC 59.341 63.158 23.20 6.63 40.12 4.30
2296 2407 1.761198 GGAGTATACGCACCCTCCTTT 59.239 52.381 8.93 0.00 40.30 3.11
2303 2414 1.581447 GCACCCTCCTTTTGCGAAG 59.419 57.895 0.00 0.00 0.00 3.79
2309 2420 3.263425 ACCCTCCTTTTGCGAAGAAGATA 59.737 43.478 0.00 0.00 0.00 1.98
2310 2421 3.623510 CCCTCCTTTTGCGAAGAAGATAC 59.376 47.826 0.00 0.00 0.00 2.24
2311 2422 4.508662 CCTCCTTTTGCGAAGAAGATACT 58.491 43.478 0.00 0.00 0.00 2.12
2312 2423 4.568760 CCTCCTTTTGCGAAGAAGATACTC 59.431 45.833 0.00 0.00 0.00 2.59
2313 2424 4.504858 TCCTTTTGCGAAGAAGATACTCC 58.495 43.478 0.00 0.00 0.00 3.85
2314 2425 3.623510 CCTTTTGCGAAGAAGATACTCCC 59.376 47.826 0.00 0.00 0.00 4.30
2315 2426 4.508662 CTTTTGCGAAGAAGATACTCCCT 58.491 43.478 0.00 0.00 0.00 4.20
2316 2427 3.526931 TTGCGAAGAAGATACTCCCTG 57.473 47.619 0.00 0.00 0.00 4.45
2317 2428 1.137086 TGCGAAGAAGATACTCCCTGC 59.863 52.381 0.00 0.00 0.00 4.85
2318 2429 1.137086 GCGAAGAAGATACTCCCTGCA 59.863 52.381 0.00 0.00 0.00 4.41
2319 2430 2.801342 GCGAAGAAGATACTCCCTGCAG 60.801 54.545 6.78 6.78 0.00 4.41
2320 2431 2.428890 CGAAGAAGATACTCCCTGCAGT 59.571 50.000 13.81 0.00 0.00 4.40
2321 2432 3.490078 CGAAGAAGATACTCCCTGCAGTC 60.490 52.174 13.81 2.01 0.00 3.51
2322 2433 2.393646 AGAAGATACTCCCTGCAGTCC 58.606 52.381 13.81 0.00 0.00 3.85
2323 2434 2.111384 GAAGATACTCCCTGCAGTCCA 58.889 52.381 13.81 0.00 0.00 4.02
2324 2435 2.485966 AGATACTCCCTGCAGTCCAT 57.514 50.000 13.81 0.00 0.00 3.41
2325 2436 3.619900 AGATACTCCCTGCAGTCCATA 57.380 47.619 13.81 0.13 0.00 2.74
2326 2437 4.139162 AGATACTCCCTGCAGTCCATAT 57.861 45.455 13.81 5.30 0.00 1.78
2327 2438 4.497516 AGATACTCCCTGCAGTCCATATT 58.502 43.478 13.81 0.00 0.00 1.28
2328 2439 5.655394 AGATACTCCCTGCAGTCCATATTA 58.345 41.667 13.81 0.00 0.00 0.98
2329 2440 6.084738 AGATACTCCCTGCAGTCCATATTAA 58.915 40.000 13.81 0.00 0.00 1.40
2330 2441 6.732862 AGATACTCCCTGCAGTCCATATTAAT 59.267 38.462 13.81 0.00 0.00 1.40
2331 2442 5.653255 ACTCCCTGCAGTCCATATTAATT 57.347 39.130 13.81 0.00 0.00 1.40
2332 2443 5.380043 ACTCCCTGCAGTCCATATTAATTG 58.620 41.667 13.81 0.00 0.00 2.32
2333 2444 5.132648 ACTCCCTGCAGTCCATATTAATTGA 59.867 40.000 13.81 0.00 0.00 2.57
2334 2445 5.624159 TCCCTGCAGTCCATATTAATTGAG 58.376 41.667 13.81 0.00 0.00 3.02
2335 2446 4.763793 CCCTGCAGTCCATATTAATTGAGG 59.236 45.833 13.81 0.00 0.00 3.86
2336 2447 4.217118 CCTGCAGTCCATATTAATTGAGGC 59.783 45.833 13.81 0.00 0.00 4.70
2337 2448 4.790937 TGCAGTCCATATTAATTGAGGCA 58.209 39.130 0.00 0.00 0.00 4.75
2338 2449 5.199723 TGCAGTCCATATTAATTGAGGCAA 58.800 37.500 0.00 0.00 0.00 4.52
2339 2450 5.655974 TGCAGTCCATATTAATTGAGGCAAA 59.344 36.000 0.00 0.00 0.00 3.68
2340 2451 5.979517 GCAGTCCATATTAATTGAGGCAAAC 59.020 40.000 0.00 0.00 0.00 2.93
2341 2452 6.183360 GCAGTCCATATTAATTGAGGCAAACT 60.183 38.462 0.00 0.00 0.00 2.66
2342 2453 7.631377 GCAGTCCATATTAATTGAGGCAAACTT 60.631 37.037 0.00 0.00 0.00 2.66
2343 2454 8.253113 CAGTCCATATTAATTGAGGCAAACTTT 58.747 33.333 0.00 0.00 0.00 2.66
2344 2455 9.474313 AGTCCATATTAATTGAGGCAAACTTTA 57.526 29.630 0.00 0.00 0.00 1.85
2354 2465 9.558396 AATTGAGGCAAACTTTAATTTGAATCA 57.442 25.926 5.85 5.72 41.28 2.57
2355 2466 8.954950 TTGAGGCAAACTTTAATTTGAATCAA 57.045 26.923 12.83 12.83 41.28 2.57
2356 2467 8.954950 TGAGGCAAACTTTAATTTGAATCAAA 57.045 26.923 11.10 11.10 41.28 2.69
2357 2468 9.044150 TGAGGCAAACTTTAATTTGAATCAAAG 57.956 29.630 14.10 2.56 41.28 2.77
2358 2469 8.382030 AGGCAAACTTTAATTTGAATCAAAGG 57.618 30.769 14.10 4.71 41.28 3.11
2359 2470 7.445096 AGGCAAACTTTAATTTGAATCAAAGGG 59.555 33.333 14.10 5.01 41.28 3.95
2360 2471 7.443879 GGCAAACTTTAATTTGAATCAAAGGGA 59.556 33.333 14.10 0.00 41.28 4.20
2361 2472 8.498358 GCAAACTTTAATTTGAATCAAAGGGAG 58.502 33.333 14.10 10.82 41.28 4.30
2362 2473 9.546428 CAAACTTTAATTTGAATCAAAGGGAGT 57.454 29.630 14.10 11.36 41.28 3.85
2363 2474 9.546428 AAACTTTAATTTGAATCAAAGGGAGTG 57.454 29.630 14.10 5.49 36.76 3.51
2364 2475 7.154656 ACTTTAATTTGAATCAAAGGGAGTGC 58.845 34.615 14.10 0.00 36.76 4.40
2365 2476 6.662865 TTAATTTGAATCAAAGGGAGTGCA 57.337 33.333 14.10 0.00 36.76 4.57
2366 2477 5.750352 AATTTGAATCAAAGGGAGTGCAT 57.250 34.783 14.10 0.00 36.76 3.96
2367 2478 6.855763 AATTTGAATCAAAGGGAGTGCATA 57.144 33.333 14.10 0.00 36.76 3.14
2368 2479 5.643379 TTTGAATCAAAGGGAGTGCATAC 57.357 39.130 4.03 0.00 0.00 2.39
2369 2480 4.574674 TGAATCAAAGGGAGTGCATACT 57.425 40.909 0.00 0.00 40.66 2.12
2370 2481 5.692115 TGAATCAAAGGGAGTGCATACTA 57.308 39.130 0.00 0.00 37.25 1.82
2371 2482 6.061022 TGAATCAAAGGGAGTGCATACTAA 57.939 37.500 0.00 0.00 37.25 2.24
2372 2483 6.480763 TGAATCAAAGGGAGTGCATACTAAA 58.519 36.000 0.00 0.00 37.25 1.85
2373 2484 6.599244 TGAATCAAAGGGAGTGCATACTAAAG 59.401 38.462 0.00 0.00 37.25 1.85
2374 2485 5.499004 TCAAAGGGAGTGCATACTAAAGT 57.501 39.130 0.00 0.00 37.25 2.66
2375 2486 6.614694 TCAAAGGGAGTGCATACTAAAGTA 57.385 37.500 0.00 0.00 37.25 2.24
2376 2487 7.195374 TCAAAGGGAGTGCATACTAAAGTAT 57.805 36.000 0.00 0.00 41.58 2.12
2377 2488 7.272978 TCAAAGGGAGTGCATACTAAAGTATC 58.727 38.462 0.00 0.00 39.06 2.24
2378 2489 6.808321 AAGGGAGTGCATACTAAAGTATCA 57.192 37.500 0.00 0.33 39.06 2.15
2379 2490 6.808321 AGGGAGTGCATACTAAAGTATCAA 57.192 37.500 0.00 0.00 39.06 2.57
2380 2491 7.380423 AGGGAGTGCATACTAAAGTATCAAT 57.620 36.000 0.00 2.09 39.06 2.57
2381 2492 7.220030 AGGGAGTGCATACTAAAGTATCAATG 58.780 38.462 0.00 0.00 39.06 2.82
2382 2493 6.992715 GGGAGTGCATACTAAAGTATCAATGT 59.007 38.462 0.00 0.00 39.06 2.71
2383 2494 7.499232 GGGAGTGCATACTAAAGTATCAATGTT 59.501 37.037 0.00 0.00 39.06 2.71
2384 2495 8.338259 GGAGTGCATACTAAAGTATCAATGTTG 58.662 37.037 0.00 0.00 39.06 3.33
2385 2496 8.792830 AGTGCATACTAAAGTATCAATGTTGT 57.207 30.769 0.00 0.00 39.06 3.32
2386 2497 9.231297 AGTGCATACTAAAGTATCAATGTTGTT 57.769 29.630 0.00 0.00 39.06 2.83
2387 2498 9.840427 GTGCATACTAAAGTATCAATGTTGTTT 57.160 29.630 0.00 0.00 39.06 2.83
2396 2507 7.750229 AGTATCAATGTTGTTTCTCATGTGT 57.250 32.000 0.00 0.00 0.00 3.72
2397 2508 8.846943 AGTATCAATGTTGTTTCTCATGTGTA 57.153 30.769 0.00 0.00 0.00 2.90
2398 2509 8.939929 AGTATCAATGTTGTTTCTCATGTGTAG 58.060 33.333 0.00 0.00 0.00 2.74
2399 2510 6.000891 TCAATGTTGTTTCTCATGTGTAGC 57.999 37.500 0.00 0.00 0.00 3.58
2400 2511 5.764686 TCAATGTTGTTTCTCATGTGTAGCT 59.235 36.000 0.00 0.00 0.00 3.32
2401 2512 5.869753 ATGTTGTTTCTCATGTGTAGCTC 57.130 39.130 0.00 0.00 0.00 4.09
2402 2513 4.702831 TGTTGTTTCTCATGTGTAGCTCA 58.297 39.130 0.00 0.00 0.00 4.26
2403 2514 5.122519 TGTTGTTTCTCATGTGTAGCTCAA 58.877 37.500 0.00 0.00 0.00 3.02
2404 2515 5.237127 TGTTGTTTCTCATGTGTAGCTCAAG 59.763 40.000 0.00 0.00 0.00 3.02
2405 2516 3.748048 TGTTTCTCATGTGTAGCTCAAGC 59.252 43.478 0.00 0.00 42.49 4.01
2416 2527 3.046280 GCTCAAGCTACGTGGTACC 57.954 57.895 4.43 4.43 38.21 3.34
2417 2528 0.459759 GCTCAAGCTACGTGGTACCC 60.460 60.000 10.07 0.00 38.21 3.69
2418 2529 0.175073 CTCAAGCTACGTGGTACCCC 59.825 60.000 10.07 0.00 0.00 4.95
2419 2530 0.251922 TCAAGCTACGTGGTACCCCT 60.252 55.000 10.07 0.00 0.00 4.79
2420 2531 0.611714 CAAGCTACGTGGTACCCCTT 59.388 55.000 10.07 0.00 0.00 3.95
2421 2532 1.826720 CAAGCTACGTGGTACCCCTTA 59.173 52.381 10.07 0.00 0.00 2.69
2422 2533 2.433239 CAAGCTACGTGGTACCCCTTAT 59.567 50.000 10.07 0.00 0.00 1.73
2423 2534 2.314246 AGCTACGTGGTACCCCTTATC 58.686 52.381 10.07 0.00 0.00 1.75
2424 2535 2.091444 AGCTACGTGGTACCCCTTATCT 60.091 50.000 10.07 0.00 0.00 1.98
2425 2536 2.697229 GCTACGTGGTACCCCTTATCTT 59.303 50.000 10.07 0.00 0.00 2.40
2426 2537 3.891366 GCTACGTGGTACCCCTTATCTTA 59.109 47.826 10.07 0.00 0.00 2.10
2427 2538 4.022503 GCTACGTGGTACCCCTTATCTTAG 60.023 50.000 10.07 0.39 0.00 2.18
2428 2539 2.697229 ACGTGGTACCCCTTATCTTAGC 59.303 50.000 10.07 0.00 0.00 3.09
2429 2540 2.036862 CGTGGTACCCCTTATCTTAGCC 59.963 54.545 10.07 0.00 0.00 3.93
2430 2541 3.043418 GTGGTACCCCTTATCTTAGCCA 58.957 50.000 10.07 0.00 0.00 4.75
2431 2542 3.651423 GTGGTACCCCTTATCTTAGCCAT 59.349 47.826 10.07 0.00 0.00 4.40
2432 2543 4.104261 GTGGTACCCCTTATCTTAGCCATT 59.896 45.833 10.07 0.00 0.00 3.16
2433 2544 4.349930 TGGTACCCCTTATCTTAGCCATTC 59.650 45.833 10.07 0.00 0.00 2.67
2434 2545 4.349930 GGTACCCCTTATCTTAGCCATTCA 59.650 45.833 0.00 0.00 0.00 2.57
2435 2546 5.014228 GGTACCCCTTATCTTAGCCATTCAT 59.986 44.000 0.00 0.00 0.00 2.57
2436 2547 5.669798 ACCCCTTATCTTAGCCATTCATT 57.330 39.130 0.00 0.00 0.00 2.57
2437 2548 6.030727 ACCCCTTATCTTAGCCATTCATTT 57.969 37.500 0.00 0.00 0.00 2.32
2438 2549 6.443832 ACCCCTTATCTTAGCCATTCATTTT 58.556 36.000 0.00 0.00 0.00 1.82
2439 2550 6.902974 ACCCCTTATCTTAGCCATTCATTTTT 59.097 34.615 0.00 0.00 0.00 1.94
2440 2551 7.147672 ACCCCTTATCTTAGCCATTCATTTTTG 60.148 37.037 0.00 0.00 0.00 2.44
2441 2552 6.703165 CCCTTATCTTAGCCATTCATTTTTGC 59.297 38.462 0.00 0.00 0.00 3.68
2442 2553 7.267128 CCTTATCTTAGCCATTCATTTTTGCA 58.733 34.615 0.00 0.00 0.00 4.08
2443 2554 7.929785 CCTTATCTTAGCCATTCATTTTTGCAT 59.070 33.333 0.00 0.00 0.00 3.96
2444 2555 8.876275 TTATCTTAGCCATTCATTTTTGCATC 57.124 30.769 0.00 0.00 0.00 3.91
2445 2556 6.283544 TCTTAGCCATTCATTTTTGCATCA 57.716 33.333 0.00 0.00 0.00 3.07
2446 2557 6.880484 TCTTAGCCATTCATTTTTGCATCAT 58.120 32.000 0.00 0.00 0.00 2.45
2447 2558 6.759356 TCTTAGCCATTCATTTTTGCATCATG 59.241 34.615 0.00 0.00 0.00 3.07
2448 2559 5.092554 AGCCATTCATTTTTGCATCATGA 57.907 34.783 0.00 0.00 0.00 3.07
2449 2560 5.680619 AGCCATTCATTTTTGCATCATGAT 58.319 33.333 1.18 1.18 0.00 2.45
2450 2561 5.758296 AGCCATTCATTTTTGCATCATGATC 59.242 36.000 4.86 1.82 0.00 2.92
2451 2562 5.049680 GCCATTCATTTTTGCATCATGATCC 60.050 40.000 4.86 0.00 0.00 3.36
2452 2563 5.176774 CCATTCATTTTTGCATCATGATCCG 59.823 40.000 4.86 0.00 0.00 4.18
2453 2564 4.987408 TCATTTTTGCATCATGATCCGT 57.013 36.364 4.86 0.00 0.00 4.69
2454 2565 4.674475 TCATTTTTGCATCATGATCCGTG 58.326 39.130 4.86 0.00 0.00 4.94
2455 2566 2.565210 TTTTGCATCATGATCCGTGC 57.435 45.000 4.86 8.70 38.05 5.34
2456 2567 1.461559 TTTGCATCATGATCCGTGCA 58.538 45.000 15.90 15.90 44.97 4.57
2457 2568 1.018910 TTGCATCATGATCCGTGCAG 58.981 50.000 18.31 2.77 46.80 4.41
2458 2569 0.816421 TGCATCATGATCCGTGCAGG 60.816 55.000 15.90 0.00 42.13 4.85
2459 2570 1.947013 CATCATGATCCGTGCAGGC 59.053 57.895 4.86 0.00 40.77 4.85
2460 2571 0.816421 CATCATGATCCGTGCAGGCA 60.816 55.000 4.86 0.00 40.77 4.75
2461 2572 0.109913 ATCATGATCCGTGCAGGCAT 59.890 50.000 1.18 0.00 40.77 4.40
2462 2573 0.758123 TCATGATCCGTGCAGGCATA 59.242 50.000 0.00 0.00 40.77 3.14
2463 2574 1.348696 TCATGATCCGTGCAGGCATAT 59.651 47.619 0.00 0.00 40.77 1.78
2464 2575 2.156917 CATGATCCGTGCAGGCATATT 58.843 47.619 0.00 0.00 40.77 1.28
2465 2576 2.346766 TGATCCGTGCAGGCATATTT 57.653 45.000 0.00 0.00 40.77 1.40
2466 2577 1.948834 TGATCCGTGCAGGCATATTTG 59.051 47.619 0.00 0.00 40.77 2.32
2467 2578 1.949525 GATCCGTGCAGGCATATTTGT 59.050 47.619 0.00 0.00 40.77 2.83
2468 2579 1.378531 TCCGTGCAGGCATATTTGTC 58.621 50.000 0.00 0.00 40.77 3.18
2469 2580 1.093972 CCGTGCAGGCATATTTGTCA 58.906 50.000 0.00 0.00 0.00 3.58
2470 2581 1.677576 CCGTGCAGGCATATTTGTCAT 59.322 47.619 0.00 0.00 0.00 3.06
2471 2582 2.099592 CCGTGCAGGCATATTTGTCATT 59.900 45.455 0.00 0.00 0.00 2.57
2472 2583 3.429272 CCGTGCAGGCATATTTGTCATTT 60.429 43.478 0.00 0.00 0.00 2.32
2473 2584 4.175516 CGTGCAGGCATATTTGTCATTTT 58.824 39.130 0.00 0.00 0.00 1.82
2474 2585 4.626604 CGTGCAGGCATATTTGTCATTTTT 59.373 37.500 0.00 0.00 0.00 1.94
2475 2586 5.444877 CGTGCAGGCATATTTGTCATTTTTG 60.445 40.000 0.00 0.00 0.00 2.44
2476 2587 5.409214 GTGCAGGCATATTTGTCATTTTTGT 59.591 36.000 0.00 0.00 0.00 2.83
2477 2588 5.996513 TGCAGGCATATTTGTCATTTTTGTT 59.003 32.000 0.00 0.00 0.00 2.83
2478 2589 6.485984 TGCAGGCATATTTGTCATTTTTGTTT 59.514 30.769 0.00 0.00 0.00 2.83
2479 2590 7.017055 GCAGGCATATTTGTCATTTTTGTTTC 58.983 34.615 0.00 0.00 0.00 2.78
2480 2591 7.095102 GCAGGCATATTTGTCATTTTTGTTTCT 60.095 33.333 0.00 0.00 0.00 2.52
2481 2592 8.437742 CAGGCATATTTGTCATTTTTGTTTCTC 58.562 33.333 0.00 0.00 0.00 2.87
2482 2593 8.370182 AGGCATATTTGTCATTTTTGTTTCTCT 58.630 29.630 0.00 0.00 0.00 3.10
2483 2594 8.650714 GGCATATTTGTCATTTTTGTTTCTCTC 58.349 33.333 0.00 0.00 0.00 3.20
2484 2595 9.195411 GCATATTTGTCATTTTTGTTTCTCTCA 57.805 29.630 0.00 0.00 0.00 3.27
2488 2599 7.504922 TTGTCATTTTTGTTTCTCTCAAACG 57.495 32.000 0.00 0.00 35.05 3.60
2489 2600 6.847400 TGTCATTTTTGTTTCTCTCAAACGA 58.153 32.000 0.00 0.00 35.05 3.85
2490 2601 7.309177 TGTCATTTTTGTTTCTCTCAAACGAA 58.691 30.769 0.00 0.00 35.05 3.85
2491 2602 7.810282 TGTCATTTTTGTTTCTCTCAAACGAAA 59.190 29.630 8.06 8.06 40.07 3.46
2492 2603 8.102112 GTCATTTTTGTTTCTCTCAAACGAAAC 58.898 33.333 10.74 7.68 45.59 2.78
2497 2608 4.644954 GTTTCTCTCAAACGAAACAACGT 58.355 39.130 9.30 0.00 45.05 3.99
2498 2609 5.788467 GTTTCTCTCAAACGAAACAACGTA 58.212 37.500 9.30 0.00 45.05 3.57
2499 2610 6.416514 GTTTCTCTCAAACGAAACAACGTAT 58.583 36.000 9.30 0.00 45.05 3.06
2500 2611 7.558137 GTTTCTCTCAAACGAAACAACGTATA 58.442 34.615 9.30 0.00 45.05 1.47
2501 2612 7.697352 TTCTCTCAAACGAAACAACGTATAA 57.303 32.000 0.00 0.00 45.83 0.98
2502 2613 7.697352 TCTCTCAAACGAAACAACGTATAAA 57.303 32.000 0.00 0.00 45.83 1.40
2503 2614 7.558137 TCTCTCAAACGAAACAACGTATAAAC 58.442 34.615 0.00 0.00 45.83 2.01
2504 2615 7.436080 TCTCTCAAACGAAACAACGTATAAACT 59.564 33.333 0.00 0.00 45.83 2.66
2505 2616 7.908230 TCTCAAACGAAACAACGTATAAACTT 58.092 30.769 0.00 0.00 45.83 2.66
2506 2617 8.057742 TCTCAAACGAAACAACGTATAAACTTC 58.942 33.333 0.00 0.00 45.83 3.01
2507 2618 7.682824 TCAAACGAAACAACGTATAAACTTCA 58.317 30.769 0.00 0.00 45.83 3.02
2508 2619 8.173775 TCAAACGAAACAACGTATAAACTTCAA 58.826 29.630 0.00 0.00 45.83 2.69
2509 2620 8.786955 CAAACGAAACAACGTATAAACTTCAAA 58.213 29.630 0.00 0.00 45.83 2.69
2510 2621 7.881516 ACGAAACAACGTATAAACTTCAAAC 57.118 32.000 0.00 0.00 44.72 2.93
2511 2622 7.687445 ACGAAACAACGTATAAACTTCAAACT 58.313 30.769 0.00 0.00 44.72 2.66
2512 2623 8.177013 ACGAAACAACGTATAAACTTCAAACTT 58.823 29.630 0.00 0.00 44.72 2.66
2513 2624 9.002080 CGAAACAACGTATAAACTTCAAACTTT 57.998 29.630 0.00 0.00 0.00 2.66
2515 2626 7.673810 ACAACGTATAAACTTCAAACTTTGC 57.326 32.000 0.00 0.00 0.00 3.68
2516 2627 7.251994 ACAACGTATAAACTTCAAACTTTGCA 58.748 30.769 0.00 0.00 0.00 4.08
2517 2628 7.755822 ACAACGTATAAACTTCAAACTTTGCAA 59.244 29.630 0.00 0.00 0.00 4.08
2518 2629 7.908193 ACGTATAAACTTCAAACTTTGCAAG 57.092 32.000 0.00 4.87 0.00 4.01
2519 2630 7.699566 ACGTATAAACTTCAAACTTTGCAAGA 58.300 30.769 15.10 0.00 0.00 3.02
2520 2631 7.642586 ACGTATAAACTTCAAACTTTGCAAGAC 59.357 33.333 15.10 6.58 0.00 3.01
2521 2632 7.642194 CGTATAAACTTCAAACTTTGCAAGACA 59.358 33.333 15.10 0.00 0.00 3.41
2522 2633 9.296400 GTATAAACTTCAAACTTTGCAAGACAA 57.704 29.630 15.10 0.00 36.13 3.18
2523 2634 6.466308 AAACTTCAAACTTTGCAAGACAAC 57.534 33.333 15.10 0.00 38.23 3.32
2524 2635 5.132897 ACTTCAAACTTTGCAAGACAACA 57.867 34.783 15.10 0.00 38.23 3.33
2525 2636 5.537188 ACTTCAAACTTTGCAAGACAACAA 58.463 33.333 15.10 0.00 38.23 2.83
2526 2637 5.988561 ACTTCAAACTTTGCAAGACAACAAA 59.011 32.000 15.10 0.00 38.23 2.83
2527 2638 6.481644 ACTTCAAACTTTGCAAGACAACAAAA 59.518 30.769 15.10 0.00 38.23 2.44
2528 2639 6.221858 TCAAACTTTGCAAGACAACAAAAC 57.778 33.333 0.00 0.00 38.23 2.43
2529 2640 5.755375 TCAAACTTTGCAAGACAACAAAACA 59.245 32.000 0.00 0.00 38.23 2.83
2530 2641 6.426328 TCAAACTTTGCAAGACAACAAAACAT 59.574 30.769 0.00 0.00 38.23 2.71
2531 2642 6.799926 AACTTTGCAAGACAACAAAACATT 57.200 29.167 0.00 0.00 38.23 2.71
2532 2643 6.407475 ACTTTGCAAGACAACAAAACATTC 57.593 33.333 0.00 0.00 38.23 2.67
2533 2644 6.165577 ACTTTGCAAGACAACAAAACATTCT 58.834 32.000 0.00 0.00 38.23 2.40
2534 2645 7.319646 ACTTTGCAAGACAACAAAACATTCTA 58.680 30.769 0.00 0.00 38.23 2.10
2535 2646 7.816995 ACTTTGCAAGACAACAAAACATTCTAA 59.183 29.630 0.00 0.00 38.23 2.10
2536 2647 8.715191 TTTGCAAGACAACAAAACATTCTAAT 57.285 26.923 0.00 0.00 38.23 1.73
2537 2648 8.715191 TTGCAAGACAACAAAACATTCTAATT 57.285 26.923 0.00 0.00 31.73 1.40
2538 2649 9.809096 TTGCAAGACAACAAAACATTCTAATTA 57.191 25.926 0.00 0.00 31.73 1.40
2539 2650 9.243637 TGCAAGACAACAAAACATTCTAATTAC 57.756 29.630 0.00 0.00 0.00 1.89
2540 2651 9.463443 GCAAGACAACAAAACATTCTAATTACT 57.537 29.630 0.00 0.00 0.00 2.24
2548 2659 9.747898 ACAAAACATTCTAATTACTATGTGGGA 57.252 29.630 7.94 0.00 31.98 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.494625 ACACGTCAATTTTCGAGTCCATAATAT 59.505 33.333 6.12 0.00 0.00 1.28
37 38 9.231297 TGTTAGAAGAAACATAAATTCTCCCTG 57.769 33.333 0.00 0.00 36.14 4.45
98 99 3.940852 TGGAAACCATCGAGATGACAATG 59.059 43.478 14.12 0.44 41.20 2.82
104 105 2.679837 CCTTGTGGAAACCATCGAGATG 59.320 50.000 6.12 6.12 35.28 2.90
106 107 1.974957 TCCTTGTGGAAACCATCGAGA 59.025 47.619 0.00 0.00 39.87 4.04
110 111 3.703001 TCTCTCCTTGTGGAAACCATC 57.297 47.619 0.00 0.00 42.66 3.51
200 201 6.740944 AAACAAGTTGCTTTACCCCTAAAT 57.259 33.333 1.81 0.00 0.00 1.40
249 250 7.747888 TCACAATGTATAACAATTTCACCTCG 58.252 34.615 0.00 0.00 0.00 4.63
303 305 5.418524 TGGATCCAACAATACATTCTTGTGG 59.581 40.000 13.46 0.00 36.95 4.17
521 534 5.698545 CCTAGCTGTCCATTACATTAGCTTC 59.301 44.000 0.00 0.00 37.98 3.86
522 535 5.131142 ACCTAGCTGTCCATTACATTAGCTT 59.869 40.000 0.00 0.00 37.98 3.74
592 618 1.464734 CCTACTCAGCCTCTTGACGA 58.535 55.000 0.00 0.00 0.00 4.20
676 702 2.875933 CCGAGCAGTTGAACCAAGTTTA 59.124 45.455 0.00 0.00 0.00 2.01
746 772 3.084786 GGTGGCATCTAAGCTCTTGTTT 58.915 45.455 0.00 0.00 34.17 2.83
826 860 4.851639 ATACAGAAGGAAAGGTGAGCAT 57.148 40.909 0.00 0.00 0.00 3.79
931 981 8.677148 TTATGGTTAATCTTGAATCTAGGTGC 57.323 34.615 0.00 0.00 0.00 5.01
1026 1077 3.744940 TCTCCAAAGATCCTTGCCATT 57.255 42.857 0.00 0.00 0.00 3.16
1130 1193 8.964420 TTGCAAAAGTTAATGTATTAGAGCAC 57.036 30.769 0.00 0.00 0.00 4.40
1158 1223 7.322664 CCATGTAACCACTGCTTGATTATTTT 58.677 34.615 0.00 0.00 0.00 1.82
1223 1288 4.433615 CACACCGAAGCTATAGACAACAT 58.566 43.478 3.21 0.00 0.00 2.71
1226 1291 2.829720 ACCACACCGAAGCTATAGACAA 59.170 45.455 3.21 0.00 0.00 3.18
1287 1352 0.804989 GGAAGCCCATCGTTTGACTG 59.195 55.000 0.00 0.00 0.00 3.51
1332 1397 6.744112 AGAACTTGAGAGAACTCTTGTGTAG 58.256 40.000 5.80 3.05 42.99 2.74
1342 1407 9.818796 GTTGATGAAAATAGAACTTGAGAGAAC 57.181 33.333 0.00 0.00 0.00 3.01
1368 1433 9.917139 GACATCGTATTATTTTTGTTTCGTTTG 57.083 29.630 0.00 0.00 0.00 2.93
1373 1438 9.072294 CCAAGGACATCGTATTATTTTTGTTTC 57.928 33.333 0.00 0.00 0.00 2.78
1384 1478 7.610305 ACTTGAAATAACCAAGGACATCGTATT 59.390 33.333 0.00 0.00 43.81 1.89
1394 1488 6.648879 TTCCAAGACTTGAAATAACCAAGG 57.351 37.500 16.99 0.00 43.81 3.61
1408 1502 5.339530 CCTTCCTTCCACATATTCCAAGACT 60.340 44.000 0.00 0.00 0.00 3.24
1412 1506 3.052944 CCCCTTCCTTCCACATATTCCAA 60.053 47.826 0.00 0.00 0.00 3.53
1436 1530 2.411904 GAGTCTGGCAGTTTCTCTGTG 58.588 52.381 15.27 0.00 45.23 3.66
1459 1553 4.356405 AGTGAACAAGTGTCCATGATCA 57.644 40.909 0.00 0.00 0.00 2.92
1472 1566 4.873827 AGCAAAACTTCGTCTAGTGAACAA 59.126 37.500 0.00 0.00 0.00 2.83
1490 1584 2.415759 CGCTACATGGATGCAAAGCAAA 60.416 45.455 16.11 0.00 43.62 3.68
1512 1606 3.886505 GGGTTGTCTTGGACACACAATAA 59.113 43.478 0.00 0.00 42.60 1.40
1545 1639 3.176411 AGACAACTGATGACATGAGGGA 58.824 45.455 6.85 0.00 0.00 4.20
1604 1698 1.210478 ACAAAGTATGCAGGGCGATCT 59.790 47.619 0.00 0.00 0.00 2.75
1652 1746 4.279420 CACGGAGTCTGAATATCATCTCCA 59.721 45.833 20.82 0.00 41.61 3.86
1731 1826 2.955660 ACATGAAGTCTTCCCGCAAAAA 59.044 40.909 10.12 0.00 0.00 1.94
1732 1827 2.293122 CACATGAAGTCTTCCCGCAAAA 59.707 45.455 10.12 0.00 0.00 2.44
1733 1828 1.879380 CACATGAAGTCTTCCCGCAAA 59.121 47.619 10.12 0.00 0.00 3.68
1734 1829 1.202758 ACACATGAAGTCTTCCCGCAA 60.203 47.619 10.12 0.00 0.00 4.85
1735 1830 0.396435 ACACATGAAGTCTTCCCGCA 59.604 50.000 10.12 0.00 0.00 5.69
1736 1831 1.197721 CAACACATGAAGTCTTCCCGC 59.802 52.381 10.12 0.00 0.00 6.13
1737 1832 2.494059 ACAACACATGAAGTCTTCCCG 58.506 47.619 10.12 3.74 0.00 5.14
1738 1833 4.499696 CCAAACAACACATGAAGTCTTCCC 60.500 45.833 10.12 0.00 0.00 3.97
1739 1834 4.338118 TCCAAACAACACATGAAGTCTTCC 59.662 41.667 10.12 0.00 0.00 3.46
1740 1835 5.499139 TCCAAACAACACATGAAGTCTTC 57.501 39.130 5.58 5.58 0.00 2.87
1741 1836 5.418840 ACTTCCAAACAACACATGAAGTCTT 59.581 36.000 0.00 0.00 0.00 3.01
1767 1862 5.948992 AACAAAAGACAACCAGAGATAGC 57.051 39.130 0.00 0.00 0.00 2.97
1805 1903 1.347707 ACCGAGGCTGTGATGAAGAAA 59.652 47.619 0.00 0.00 0.00 2.52
1814 1918 0.250295 TTCTCCAAACCGAGGCTGTG 60.250 55.000 0.00 0.00 0.00 3.66
1819 1923 2.038557 TCCTTTCTTCTCCAAACCGAGG 59.961 50.000 0.00 0.00 0.00 4.63
1831 1935 5.882557 TGCACCTTGATATCTTCCTTTCTTC 59.117 40.000 3.98 0.00 0.00 2.87
1845 1950 5.673514 AGAAATTTTTGTGTGCACCTTGAT 58.326 33.333 15.69 0.00 0.00 2.57
1913 2020 1.676635 CACCACCACCTGCTCCATG 60.677 63.158 0.00 0.00 0.00 3.66
1920 2027 0.535102 GACAAGGACACCACCACCTG 60.535 60.000 0.00 0.00 34.03 4.00
1978 2085 5.009010 ACATACTTATCTTACGTACACGGGG 59.991 44.000 6.72 0.00 44.95 5.73
1994 2101 4.521639 ACTCCACGACAGTCAACATACTTA 59.478 41.667 0.41 0.00 0.00 2.24
2024 2131 9.323985 GTTTAGACTTCAGAGCTTCATATGAAT 57.676 33.333 18.26 4.93 33.01 2.57
2033 2144 2.037251 TGCGGTTTAGACTTCAGAGCTT 59.963 45.455 0.00 0.00 0.00 3.74
2062 2173 2.337532 GATGCCAATGCCGATGCC 59.662 61.111 0.00 0.00 36.33 4.40
2085 2196 5.943349 ATGCTTGGATGGAAATTCATCAA 57.057 34.783 8.82 0.00 43.82 2.57
2088 2199 5.424757 CACAATGCTTGGATGGAAATTCAT 58.575 37.500 0.00 0.00 34.12 2.57
2104 2215 1.078848 AGAGAGTCGCCCACAATGC 60.079 57.895 0.00 0.00 0.00 3.56
2108 2219 1.530655 TCACAGAGAGTCGCCCACA 60.531 57.895 0.00 0.00 0.00 4.17
2127 2238 7.331026 TCTGACCAGATTAAATCACCTTGTAG 58.669 38.462 0.00 0.00 31.41 2.74
2144 2255 6.482641 CAGAAACCATTCATAGATCTGACCAG 59.517 42.308 5.18 0.00 38.06 4.00
2150 2261 8.766476 TCTCTTTCAGAAACCATTCATAGATCT 58.234 33.333 0.00 0.00 38.06 2.75
2151 2262 8.954950 TCTCTTTCAGAAACCATTCATAGATC 57.045 34.615 0.00 0.00 38.06 2.75
2153 2264 7.331934 CGTTCTCTTTCAGAAACCATTCATAGA 59.668 37.037 0.00 0.00 43.10 1.98
2184 2295 6.974622 GCGTAAATCTGGTGATTCATCATTTT 59.025 34.615 0.00 6.64 41.62 1.82
2231 2342 6.537301 TGCACACAACAAAGTATAGGCTATAC 59.463 38.462 29.16 29.16 41.00 1.47
2243 2354 2.358582 TGAGTGGATGCACACAACAAAG 59.641 45.455 20.21 0.00 43.72 2.77
2259 2370 2.703798 CCCGGCCTTTGCATGAGTG 61.704 63.158 0.00 0.00 40.13 3.51
2263 2374 0.466189 ATACTCCCGGCCTTTGCATG 60.466 55.000 0.00 0.00 40.13 4.06
2275 2386 2.047769 GGAGGGTGCGTATACTCCC 58.952 63.158 13.13 15.40 42.87 4.30
2280 2391 2.032680 GCAAAAGGAGGGTGCGTATA 57.967 50.000 0.00 0.00 0.00 1.47
2286 2397 1.537202 CTTCTTCGCAAAAGGAGGGTG 59.463 52.381 0.00 0.00 0.00 4.61
2289 2400 4.508662 AGTATCTTCTTCGCAAAAGGAGG 58.491 43.478 4.69 0.00 0.00 4.30
2292 2403 3.623510 GGGAGTATCTTCTTCGCAAAAGG 59.376 47.826 0.00 0.00 33.73 3.11
2296 2407 2.418746 GCAGGGAGTATCTTCTTCGCAA 60.419 50.000 0.00 0.00 33.73 4.85
2303 2414 2.111384 TGGACTGCAGGGAGTATCTTC 58.889 52.381 19.93 2.47 33.73 2.87
2309 2420 5.132648 TCAATTAATATGGACTGCAGGGAGT 59.867 40.000 19.93 3.91 0.00 3.85
2310 2421 5.624159 TCAATTAATATGGACTGCAGGGAG 58.376 41.667 19.93 0.00 0.00 4.30
2311 2422 5.456619 CCTCAATTAATATGGACTGCAGGGA 60.457 44.000 19.93 0.83 0.00 4.20
2312 2423 4.763793 CCTCAATTAATATGGACTGCAGGG 59.236 45.833 19.93 0.00 0.00 4.45
2313 2424 4.217118 GCCTCAATTAATATGGACTGCAGG 59.783 45.833 19.93 0.00 0.00 4.85
2314 2425 4.823442 TGCCTCAATTAATATGGACTGCAG 59.177 41.667 13.48 13.48 0.00 4.41
2315 2426 4.790937 TGCCTCAATTAATATGGACTGCA 58.209 39.130 5.74 0.00 0.00 4.41
2316 2427 5.772825 TTGCCTCAATTAATATGGACTGC 57.227 39.130 5.74 0.00 0.00 4.40
2317 2428 7.338800 AGTTTGCCTCAATTAATATGGACTG 57.661 36.000 5.74 0.00 0.00 3.51
2318 2429 7.961326 AAGTTTGCCTCAATTAATATGGACT 57.039 32.000 5.74 0.00 0.00 3.85
2328 2439 9.558396 TGATTCAAATTAAAGTTTGCCTCAATT 57.442 25.926 0.00 0.00 38.61 2.32
2329 2440 9.558396 TTGATTCAAATTAAAGTTTGCCTCAAT 57.442 25.926 0.00 2.60 38.61 2.57
2330 2441 8.954950 TTGATTCAAATTAAAGTTTGCCTCAA 57.045 26.923 0.00 10.96 38.61 3.02
2331 2442 8.954950 TTTGATTCAAATTAAAGTTTGCCTCA 57.045 26.923 7.74 1.24 38.61 3.86
2332 2443 8.498358 CCTTTGATTCAAATTAAAGTTTGCCTC 58.502 33.333 12.04 0.00 39.18 4.70
2333 2444 7.445096 CCCTTTGATTCAAATTAAAGTTTGCCT 59.555 33.333 12.04 0.00 39.18 4.75
2334 2445 7.443879 TCCCTTTGATTCAAATTAAAGTTTGCC 59.556 33.333 12.04 0.00 39.18 4.52
2335 2446 8.376889 TCCCTTTGATTCAAATTAAAGTTTGC 57.623 30.769 12.04 0.00 39.18 3.68
2336 2447 9.546428 ACTCCCTTTGATTCAAATTAAAGTTTG 57.454 29.630 12.04 8.99 39.18 2.93
2337 2448 9.546428 CACTCCCTTTGATTCAAATTAAAGTTT 57.454 29.630 12.04 0.00 39.18 2.66
2338 2449 7.657354 GCACTCCCTTTGATTCAAATTAAAGTT 59.343 33.333 12.04 0.00 39.18 2.66
2339 2450 7.154656 GCACTCCCTTTGATTCAAATTAAAGT 58.845 34.615 12.04 10.30 39.18 2.66
2340 2451 7.153985 TGCACTCCCTTTGATTCAAATTAAAG 58.846 34.615 12.04 11.17 40.00 1.85
2341 2452 7.060383 TGCACTCCCTTTGATTCAAATTAAA 57.940 32.000 12.04 0.00 32.70 1.52
2342 2453 6.662865 TGCACTCCCTTTGATTCAAATTAA 57.337 33.333 12.04 0.90 32.70 1.40
2343 2454 6.855763 ATGCACTCCCTTTGATTCAAATTA 57.144 33.333 12.04 1.19 32.70 1.40
2344 2455 5.750352 ATGCACTCCCTTTGATTCAAATT 57.250 34.783 12.04 0.00 32.70 1.82
2345 2456 5.954150 AGTATGCACTCCCTTTGATTCAAAT 59.046 36.000 12.04 0.00 32.70 2.32
2346 2457 5.324409 AGTATGCACTCCCTTTGATTCAAA 58.676 37.500 11.19 11.19 0.00 2.69
2347 2458 4.922206 AGTATGCACTCCCTTTGATTCAA 58.078 39.130 0.00 0.00 0.00 2.69
2348 2459 4.574674 AGTATGCACTCCCTTTGATTCA 57.425 40.909 0.00 0.00 0.00 2.57
2349 2460 6.599638 ACTTTAGTATGCACTCCCTTTGATTC 59.400 38.462 0.00 0.00 36.14 2.52
2350 2461 6.485171 ACTTTAGTATGCACTCCCTTTGATT 58.515 36.000 0.00 0.00 36.14 2.57
2351 2462 6.067217 ACTTTAGTATGCACTCCCTTTGAT 57.933 37.500 0.00 0.00 36.14 2.57
2352 2463 5.499004 ACTTTAGTATGCACTCCCTTTGA 57.501 39.130 0.00 0.00 36.14 2.69
2353 2464 7.047891 TGATACTTTAGTATGCACTCCCTTTG 58.952 38.462 7.12 0.00 40.99 2.77
2354 2465 7.195374 TGATACTTTAGTATGCACTCCCTTT 57.805 36.000 7.12 0.00 40.99 3.11
2355 2466 6.808321 TGATACTTTAGTATGCACTCCCTT 57.192 37.500 7.12 0.00 40.99 3.95
2356 2467 6.808321 TTGATACTTTAGTATGCACTCCCT 57.192 37.500 7.12 0.00 40.99 4.20
2357 2468 6.992715 ACATTGATACTTTAGTATGCACTCCC 59.007 38.462 7.12 0.00 40.99 4.30
2358 2469 8.338259 CAACATTGATACTTTAGTATGCACTCC 58.662 37.037 7.12 0.00 40.99 3.85
2359 2470 8.883731 ACAACATTGATACTTTAGTATGCACTC 58.116 33.333 7.12 0.00 40.99 3.51
2360 2471 8.792830 ACAACATTGATACTTTAGTATGCACT 57.207 30.769 7.12 0.00 40.99 4.40
2361 2472 9.840427 AAACAACATTGATACTTTAGTATGCAC 57.160 29.630 7.12 0.00 40.99 4.57
2370 2481 8.632679 ACACATGAGAAACAACATTGATACTTT 58.367 29.630 0.00 0.00 0.00 2.66
2371 2482 8.169977 ACACATGAGAAACAACATTGATACTT 57.830 30.769 0.00 0.00 0.00 2.24
2372 2483 7.750229 ACACATGAGAAACAACATTGATACT 57.250 32.000 0.00 0.00 0.00 2.12
2373 2484 7.693951 GCTACACATGAGAAACAACATTGATAC 59.306 37.037 0.00 0.00 0.00 2.24
2374 2485 7.607607 AGCTACACATGAGAAACAACATTGATA 59.392 33.333 0.00 0.00 0.00 2.15
2375 2486 6.432162 AGCTACACATGAGAAACAACATTGAT 59.568 34.615 0.00 0.00 0.00 2.57
2376 2487 5.764686 AGCTACACATGAGAAACAACATTGA 59.235 36.000 0.00 0.00 0.00 2.57
2377 2488 6.005583 AGCTACACATGAGAAACAACATTG 57.994 37.500 0.00 0.00 0.00 2.82
2378 2489 5.764686 TGAGCTACACATGAGAAACAACATT 59.235 36.000 0.00 0.00 0.00 2.71
2379 2490 5.308014 TGAGCTACACATGAGAAACAACAT 58.692 37.500 0.00 0.00 0.00 2.71
2380 2491 4.702831 TGAGCTACACATGAGAAACAACA 58.297 39.130 0.00 0.00 0.00 3.33
2381 2492 5.673337 TTGAGCTACACATGAGAAACAAC 57.327 39.130 0.00 0.00 0.00 3.32
2382 2493 4.214119 GCTTGAGCTACACATGAGAAACAA 59.786 41.667 0.00 0.00 38.21 2.83
2383 2494 3.748048 GCTTGAGCTACACATGAGAAACA 59.252 43.478 0.00 0.00 38.21 2.83
2384 2495 4.333633 GCTTGAGCTACACATGAGAAAC 57.666 45.455 0.00 0.00 38.21 2.78
2398 2509 3.046280 GGTACCACGTAGCTTGAGC 57.954 57.895 7.15 0.00 42.49 4.26
2412 2523 5.562298 TGAATGGCTAAGATAAGGGGTAC 57.438 43.478 0.00 0.00 0.00 3.34
2413 2524 6.780198 AATGAATGGCTAAGATAAGGGGTA 57.220 37.500 0.00 0.00 0.00 3.69
2414 2525 5.669798 AATGAATGGCTAAGATAAGGGGT 57.330 39.130 0.00 0.00 0.00 4.95
2415 2526 6.983906 AAAATGAATGGCTAAGATAAGGGG 57.016 37.500 0.00 0.00 0.00 4.79
2416 2527 6.703165 GCAAAAATGAATGGCTAAGATAAGGG 59.297 38.462 0.00 0.00 0.00 3.95
2417 2528 7.267128 TGCAAAAATGAATGGCTAAGATAAGG 58.733 34.615 0.00 0.00 0.00 2.69
2418 2529 8.882415 ATGCAAAAATGAATGGCTAAGATAAG 57.118 30.769 0.00 0.00 0.00 1.73
2419 2530 8.476447 TGATGCAAAAATGAATGGCTAAGATAA 58.524 29.630 0.00 0.00 0.00 1.75
2420 2531 8.009622 TGATGCAAAAATGAATGGCTAAGATA 57.990 30.769 0.00 0.00 0.00 1.98
2421 2532 6.880484 TGATGCAAAAATGAATGGCTAAGAT 58.120 32.000 0.00 0.00 0.00 2.40
2422 2533 6.283544 TGATGCAAAAATGAATGGCTAAGA 57.716 33.333 0.00 0.00 0.00 2.10
2423 2534 6.759356 TCATGATGCAAAAATGAATGGCTAAG 59.241 34.615 6.81 0.00 0.00 2.18
2424 2535 6.641474 TCATGATGCAAAAATGAATGGCTAA 58.359 32.000 6.81 0.00 0.00 3.09
2425 2536 6.223351 TCATGATGCAAAAATGAATGGCTA 57.777 33.333 6.81 0.00 0.00 3.93
2426 2537 5.092554 TCATGATGCAAAAATGAATGGCT 57.907 34.783 6.81 0.00 0.00 4.75
2427 2538 5.049680 GGATCATGATGCAAAAATGAATGGC 60.050 40.000 21.09 0.00 34.21 4.40
2428 2539 5.176774 CGGATCATGATGCAAAAATGAATGG 59.823 40.000 24.65 2.50 34.21 3.16
2429 2540 5.751509 ACGGATCATGATGCAAAAATGAATG 59.248 36.000 24.65 8.55 34.21 2.67
2430 2541 5.751509 CACGGATCATGATGCAAAAATGAAT 59.248 36.000 24.65 0.00 34.21 2.57
2431 2542 5.103687 CACGGATCATGATGCAAAAATGAA 58.896 37.500 24.65 0.00 34.21 2.57
2432 2543 4.674475 CACGGATCATGATGCAAAAATGA 58.326 39.130 24.65 10.60 34.96 2.57
2433 2544 3.244345 GCACGGATCATGATGCAAAAATG 59.756 43.478 24.65 15.10 38.00 2.32
2434 2545 3.119065 TGCACGGATCATGATGCAAAAAT 60.119 39.130 24.65 3.97 44.72 1.82
2435 2546 2.230750 TGCACGGATCATGATGCAAAAA 59.769 40.909 24.65 6.76 44.72 1.94
2436 2547 1.817447 TGCACGGATCATGATGCAAAA 59.183 42.857 24.65 6.42 44.72 2.44
2437 2548 1.402613 CTGCACGGATCATGATGCAAA 59.597 47.619 24.65 7.74 46.75 3.68
2438 2549 1.018910 CTGCACGGATCATGATGCAA 58.981 50.000 24.65 8.06 46.75 4.08
2439 2550 0.816421 CCTGCACGGATCATGATGCA 60.816 55.000 24.65 21.25 45.45 3.96
2440 2551 1.947013 CCTGCACGGATCATGATGC 59.053 57.895 14.30 15.62 38.59 3.91
2441 2552 0.816421 TGCCTGCACGGATCATGATG 60.816 55.000 14.30 1.80 33.16 3.07
2442 2553 0.109913 ATGCCTGCACGGATCATGAT 59.890 50.000 8.25 8.25 33.16 2.45
2443 2554 0.758123 TATGCCTGCACGGATCATGA 59.242 50.000 0.00 0.00 33.16 3.07
2444 2555 1.817357 ATATGCCTGCACGGATCATG 58.183 50.000 6.40 0.00 33.16 3.07
2445 2556 2.555325 CAAATATGCCTGCACGGATCAT 59.445 45.455 6.40 4.21 33.16 2.45
2446 2557 1.948834 CAAATATGCCTGCACGGATCA 59.051 47.619 6.40 0.00 33.16 2.92
2447 2558 1.949525 ACAAATATGCCTGCACGGATC 59.050 47.619 6.40 0.00 33.16 3.36
2448 2559 1.949525 GACAAATATGCCTGCACGGAT 59.050 47.619 6.40 0.90 33.16 4.18
2449 2560 1.339535 TGACAAATATGCCTGCACGGA 60.340 47.619 6.40 0.00 33.16 4.69
2450 2561 1.093972 TGACAAATATGCCTGCACGG 58.906 50.000 0.00 0.00 0.00 4.94
2451 2562 3.425577 AATGACAAATATGCCTGCACG 57.574 42.857 0.00 0.00 0.00 5.34
2452 2563 5.409214 ACAAAAATGACAAATATGCCTGCAC 59.591 36.000 0.00 0.00 0.00 4.57
2453 2564 5.549347 ACAAAAATGACAAATATGCCTGCA 58.451 33.333 0.00 0.00 0.00 4.41
2454 2565 6.484818 AACAAAAATGACAAATATGCCTGC 57.515 33.333 0.00 0.00 0.00 4.85
2455 2566 8.314143 AGAAACAAAAATGACAAATATGCCTG 57.686 30.769 0.00 0.00 0.00 4.85
2456 2567 8.370182 AGAGAAACAAAAATGACAAATATGCCT 58.630 29.630 0.00 0.00 0.00 4.75
2457 2568 8.538409 AGAGAAACAAAAATGACAAATATGCC 57.462 30.769 0.00 0.00 0.00 4.40
2458 2569 9.195411 TGAGAGAAACAAAAATGACAAATATGC 57.805 29.630 0.00 0.00 0.00 3.14
2462 2573 8.594687 CGTTTGAGAGAAACAAAAATGACAAAT 58.405 29.630 0.00 0.00 38.63 2.32
2463 2574 7.810282 TCGTTTGAGAGAAACAAAAATGACAAA 59.190 29.630 0.00 0.00 38.63 2.83
2464 2575 7.309177 TCGTTTGAGAGAAACAAAAATGACAA 58.691 30.769 0.00 0.00 38.63 3.18
2465 2576 6.847400 TCGTTTGAGAGAAACAAAAATGACA 58.153 32.000 0.00 0.00 38.63 3.58
2466 2577 7.734538 TTCGTTTGAGAGAAACAAAAATGAC 57.265 32.000 0.00 0.00 38.63 3.06
2476 2587 4.932268 ACGTTGTTTCGTTTGAGAGAAA 57.068 36.364 0.00 0.00 41.37 2.52
2477 2588 7.697352 TTATACGTTGTTTCGTTTGAGAGAA 57.303 32.000 0.00 0.00 43.80 2.87
2478 2589 7.436080 AGTTTATACGTTGTTTCGTTTGAGAGA 59.564 33.333 0.00 0.00 43.80 3.10
2479 2590 7.561556 AGTTTATACGTTGTTTCGTTTGAGAG 58.438 34.615 0.00 0.00 43.80 3.20
2480 2591 7.467557 AGTTTATACGTTGTTTCGTTTGAGA 57.532 32.000 0.00 0.00 43.80 3.27
2481 2592 7.847078 TGAAGTTTATACGTTGTTTCGTTTGAG 59.153 33.333 0.00 0.00 43.80 3.02
2482 2593 7.682824 TGAAGTTTATACGTTGTTTCGTTTGA 58.317 30.769 0.00 0.00 43.80 2.69
2483 2594 7.879962 TGAAGTTTATACGTTGTTTCGTTTG 57.120 32.000 0.00 0.00 43.80 2.93
2484 2595 8.787884 GTTTGAAGTTTATACGTTGTTTCGTTT 58.212 29.630 0.00 0.00 43.80 3.60
2485 2596 8.177013 AGTTTGAAGTTTATACGTTGTTTCGTT 58.823 29.630 0.00 0.00 43.80 3.85
2486 2597 7.687445 AGTTTGAAGTTTATACGTTGTTTCGT 58.313 30.769 0.00 0.00 45.97 3.85
2487 2598 8.537729 AAGTTTGAAGTTTATACGTTGTTTCG 57.462 30.769 0.00 0.00 0.00 3.46
2489 2600 8.588789 GCAAAGTTTGAAGTTTATACGTTGTTT 58.411 29.630 19.82 0.00 33.01 2.83
2490 2601 7.755822 TGCAAAGTTTGAAGTTTATACGTTGTT 59.244 29.630 19.82 0.00 33.01 2.83
2491 2602 7.251994 TGCAAAGTTTGAAGTTTATACGTTGT 58.748 30.769 19.82 0.00 33.01 3.32
2492 2603 7.672351 TGCAAAGTTTGAAGTTTATACGTTG 57.328 32.000 19.82 10.63 33.39 4.10
2493 2604 8.185505 TCTTGCAAAGTTTGAAGTTTATACGTT 58.814 29.630 19.82 0.00 46.34 3.99
2494 2605 7.642586 GTCTTGCAAAGTTTGAAGTTTATACGT 59.357 33.333 19.82 0.00 46.34 3.57
2495 2606 7.642194 TGTCTTGCAAAGTTTGAAGTTTATACG 59.358 33.333 19.82 0.00 46.34 3.06
2496 2607 8.850454 TGTCTTGCAAAGTTTGAAGTTTATAC 57.150 30.769 19.82 12.24 46.34 1.47
2497 2608 9.296400 GTTGTCTTGCAAAGTTTGAAGTTTATA 57.704 29.630 19.82 2.06 46.34 0.98
2498 2609 7.816995 TGTTGTCTTGCAAAGTTTGAAGTTTAT 59.183 29.630 19.82 0.00 46.34 1.40
2499 2610 7.148641 TGTTGTCTTGCAAAGTTTGAAGTTTA 58.851 30.769 19.82 7.96 46.34 2.01
2500 2611 5.988561 TGTTGTCTTGCAAAGTTTGAAGTTT 59.011 32.000 19.82 0.00 46.34 2.66
2501 2612 5.537188 TGTTGTCTTGCAAAGTTTGAAGTT 58.463 33.333 19.82 0.00 46.34 2.66
2502 2613 5.132897 TGTTGTCTTGCAAAGTTTGAAGT 57.867 34.783 19.82 0.00 46.34 3.01
2503 2614 6.464895 TTTGTTGTCTTGCAAAGTTTGAAG 57.535 33.333 19.82 17.32 46.34 3.02
2504 2615 6.258727 TGTTTTGTTGTCTTGCAAAGTTTGAA 59.741 30.769 19.82 5.89 46.34 2.69
2505 2616 5.755375 TGTTTTGTTGTCTTGCAAAGTTTGA 59.245 32.000 19.82 1.93 46.34 2.69
2506 2617 5.983475 TGTTTTGTTGTCTTGCAAAGTTTG 58.017 33.333 11.41 11.41 46.34 2.93
2507 2618 6.799926 ATGTTTTGTTGTCTTGCAAAGTTT 57.200 29.167 0.00 0.00 46.34 2.66
2508 2619 6.650390 AGAATGTTTTGTTGTCTTGCAAAGTT 59.350 30.769 0.00 0.00 46.34 2.66
2509 2620 6.165577 AGAATGTTTTGTTGTCTTGCAAAGT 58.834 32.000 0.00 0.00 46.34 2.66
2511 2622 8.715191 ATTAGAATGTTTTGTTGTCTTGCAAA 57.285 26.923 0.00 0.00 39.03 3.68
2512 2623 8.715191 AATTAGAATGTTTTGTTGTCTTGCAA 57.285 26.923 0.00 0.00 34.16 4.08
2513 2624 9.243637 GTAATTAGAATGTTTTGTTGTCTTGCA 57.756 29.630 0.00 0.00 0.00 4.08
2514 2625 9.463443 AGTAATTAGAATGTTTTGTTGTCTTGC 57.537 29.630 0.00 0.00 0.00 4.01
2522 2633 9.747898 TCCCACATAGTAATTAGAATGTTTTGT 57.252 29.630 9.04 0.00 30.32 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.