Multiple sequence alignment - TraesCS5A01G350300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5A01G350300
chr5A
100.000
2498
0
0
1
2498
553098456
553095959
0.000000e+00
4614.0
1
TraesCS5A01G350300
chr6A
97.353
1020
21
4
1482
2498
234065300
234064284
0.000000e+00
1729.0
2
TraesCS5A01G350300
chr6A
97.047
1016
26
3
1486
2498
208573935
208574949
0.000000e+00
1707.0
3
TraesCS5A01G350300
chr6A
96.961
1020
25
4
1482
2498
268847696
268846680
0.000000e+00
1707.0
4
TraesCS5A01G350300
chr6A
96.866
1021
27
4
1482
2498
241768487
241767468
0.000000e+00
1703.0
5
TraesCS5A01G350300
chr2A
97.056
1019
27
2
1482
2497
128817104
128816086
0.000000e+00
1712.0
6
TraesCS5A01G350300
chr4A
96.866
1021
29
2
1480
2498
576322400
576323419
0.000000e+00
1705.0
7
TraesCS5A01G350300
chr4A
96.676
1023
29
3
1479
2498
325774654
325775674
0.000000e+00
1696.0
8
TraesCS5A01G350300
chr4A
78.488
172
35
2
1141
1311
725785706
725785536
7.300000e-21
111.0
9
TraesCS5A01G350300
chr3A
96.866
1021
26
4
1482
2498
207300972
207299954
0.000000e+00
1703.0
10
TraesCS5A01G350300
chr1A
96.863
1020
29
2
1482
2498
404753912
404754931
0.000000e+00
1703.0
11
TraesCS5A01G350300
chr5D
90.582
807
52
9
1
786
438151473
438150670
0.000000e+00
1048.0
12
TraesCS5A01G350300
chr7B
82.378
698
114
9
790
1483
713133785
713134477
1.280000e-167
599.0
13
TraesCS5A01G350300
chr5B
85.326
552
45
19
4
522
532702840
532702292
2.830000e-149
538.0
14
TraesCS5A01G350300
chr5B
91.549
71
2
4
655
724
532700958
532700891
7.360000e-16
95.3
15
TraesCS5A01G350300
chr2B
78.107
169
35
2
1141
1308
753634536
753634703
3.400000e-19
106.0
16
TraesCS5A01G350300
chr2B
94.444
36
2
0
324
359
215851811
215851776
3.470000e-04
56.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5A01G350300
chr5A
553095959
553098456
2497
True
4614.00
4614
100.0000
1
2498
1
chr5A.!!$R1
2497
1
TraesCS5A01G350300
chr6A
234064284
234065300
1016
True
1729.00
1729
97.3530
1482
2498
1
chr6A.!!$R1
1016
2
TraesCS5A01G350300
chr6A
208573935
208574949
1014
False
1707.00
1707
97.0470
1486
2498
1
chr6A.!!$F1
1012
3
TraesCS5A01G350300
chr6A
268846680
268847696
1016
True
1707.00
1707
96.9610
1482
2498
1
chr6A.!!$R3
1016
4
TraesCS5A01G350300
chr6A
241767468
241768487
1019
True
1703.00
1703
96.8660
1482
2498
1
chr6A.!!$R2
1016
5
TraesCS5A01G350300
chr2A
128816086
128817104
1018
True
1712.00
1712
97.0560
1482
2497
1
chr2A.!!$R1
1015
6
TraesCS5A01G350300
chr4A
576322400
576323419
1019
False
1705.00
1705
96.8660
1480
2498
1
chr4A.!!$F2
1018
7
TraesCS5A01G350300
chr4A
325774654
325775674
1020
False
1696.00
1696
96.6760
1479
2498
1
chr4A.!!$F1
1019
8
TraesCS5A01G350300
chr3A
207299954
207300972
1018
True
1703.00
1703
96.8660
1482
2498
1
chr3A.!!$R1
1016
9
TraesCS5A01G350300
chr1A
404753912
404754931
1019
False
1703.00
1703
96.8630
1482
2498
1
chr1A.!!$F1
1016
10
TraesCS5A01G350300
chr5D
438150670
438151473
803
True
1048.00
1048
90.5820
1
786
1
chr5D.!!$R1
785
11
TraesCS5A01G350300
chr7B
713133785
713134477
692
False
599.00
599
82.3780
790
1483
1
chr7B.!!$F1
693
12
TraesCS5A01G350300
chr5B
532700891
532702840
1949
True
316.65
538
88.4375
4
724
2
chr5B.!!$R1
720
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
866
2151
0.105453
TGCCTCCCTACCTCTCCATC
60.105
60.0
0.0
0.0
0.0
3.51
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1923
3214
0.912006
GGTGGGCTTCCCTCTCTCTT
60.912
60.0
3.27
0.0
45.7
2.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
89
91
7.408756
TTTCATTGTTTCTAGCATGGCTAAT
57.591
32.000
0.00
0.00
40.82
1.73
242
256
7.772757
TGTCTTGGCAAATTTAATTTTTGACCT
59.227
29.630
12.34
0.00
40.65
3.85
328
342
4.627035
GCATTTGCTTCCCATTTGTAAGAC
59.373
41.667
0.00
0.00
38.21
3.01
330
344
2.432444
TGCTTCCCATTTGTAAGACCG
58.568
47.619
0.00
0.00
0.00
4.79
405
420
1.980036
AGGCCACCATTTCTTTTGCAT
59.020
42.857
5.01
0.00
0.00
3.96
419
446
5.522456
TCTTTTGCATGAACAAGTGTCATC
58.478
37.500
0.00
0.00
0.00
2.92
428
455
4.141733
TGAACAAGTGTCATCTCCAACAGA
60.142
41.667
0.00
0.00
34.78
3.41
469
496
3.192541
ACACCTTTTTGGGCATGAAAC
57.807
42.857
0.00
0.00
41.11
2.78
527
561
1.202770
GGCGGCAAGTATATGAGGGTT
60.203
52.381
3.07
0.00
0.00
4.11
530
564
3.244112
GCGGCAAGTATATGAGGGTTACT
60.244
47.826
0.00
0.00
0.00
2.24
540
574
1.078159
TGAGGGTTACTGCTAGGGTCA
59.922
52.381
0.00
0.00
0.00
4.02
549
583
0.618680
TGCTAGGGTCACAGGAGCAT
60.619
55.000
0.00
0.00
43.32
3.79
628
662
2.361992
TCCGGAACTAGCCTCGCA
60.362
61.111
0.00
0.00
0.00
5.10
716
2000
2.063015
AATGCACGGACCCCTCAACA
62.063
55.000
0.00
0.00
0.00
3.33
732
2016
4.815308
CCTCAACAAAAATGAAATGCACCA
59.185
37.500
0.00
0.00
0.00
4.17
747
2031
4.567318
CCAGCACTGGGCCTATTC
57.433
61.111
8.93
0.00
46.81
1.75
786
2070
6.147821
CCTAATGCTAATTTGATACGGGAGTG
59.852
42.308
0.00
0.00
46.80
3.51
787
2071
4.746535
TGCTAATTTGATACGGGAGTGA
57.253
40.909
0.00
0.00
46.80
3.41
788
2072
4.693283
TGCTAATTTGATACGGGAGTGAG
58.307
43.478
0.00
0.00
46.80
3.51
817
2101
5.652324
TCTAGTTAGGGTTTCTGTTCCTCT
58.348
41.667
0.00
0.00
32.46
3.69
818
2102
4.893829
AGTTAGGGTTTCTGTTCCTCTC
57.106
45.455
0.00
0.00
32.46
3.20
819
2103
4.232091
AGTTAGGGTTTCTGTTCCTCTCA
58.768
43.478
0.00
0.00
32.46
3.27
821
2105
1.981495
AGGGTTTCTGTTCCTCTCAGG
59.019
52.381
0.00
0.00
36.46
3.86
823
2107
1.700186
GGTTTCTGTTCCTCTCAGGGT
59.300
52.381
0.00
0.00
35.59
4.34
840
2124
4.595538
TGACTTGTCGCCGCCGTT
62.596
61.111
0.00
0.00
35.54
4.44
844
2128
4.287781
TTGTCGCCGCCGTTGAGA
62.288
61.111
0.00
0.00
35.54
3.27
862
2147
1.146982
AGATCTGCCTCCCTACCTCTC
59.853
57.143
0.00
0.00
0.00
3.20
866
2151
0.105453
TGCCTCCCTACCTCTCCATC
60.105
60.000
0.00
0.00
0.00
3.51
867
2152
0.105453
GCCTCCCTACCTCTCCATCA
60.105
60.000
0.00
0.00
0.00
3.07
871
2156
3.439260
CCTCCCTACCTCTCCATCAATCT
60.439
52.174
0.00
0.00
0.00
2.40
876
2161
1.063183
CCTCTCCATCAATCTCCCCC
58.937
60.000
0.00
0.00
0.00
5.40
878
2163
0.764369
TCTCCATCAATCTCCCCCGG
60.764
60.000
0.00
0.00
0.00
5.73
879
2164
0.764369
CTCCATCAATCTCCCCCGGA
60.764
60.000
0.73
0.00
0.00
5.14
898
2183
3.771160
CTGCTCGCGGTTAGGGGT
61.771
66.667
6.13
0.00
0.00
4.95
903
2188
2.125673
CGCGGTTAGGGGTGTCTG
60.126
66.667
0.00
0.00
0.00
3.51
912
2197
2.920912
GGGTGTCTGGTGGGACGA
60.921
66.667
0.00
0.00
38.91
4.20
917
2202
1.906824
GTCTGGTGGGACGACCTGA
60.907
63.158
3.44
8.58
40.56
3.86
919
2204
3.302347
CTGGTGGGACGACCTGAGC
62.302
68.421
3.44
1.61
41.11
4.26
921
2206
2.997897
GTGGGACGACCTGAGCCT
60.998
66.667
3.44
0.00
41.11
4.58
922
2207
2.680352
TGGGACGACCTGAGCCTC
60.680
66.667
3.44
0.00
41.11
4.70
925
2210
2.341101
GGACGACCTGAGCCTCGAA
61.341
63.158
4.99
0.00
33.96
3.71
926
2211
1.585006
GACGACCTGAGCCTCGAAA
59.415
57.895
4.99
0.00
33.96
3.46
928
2213
1.179814
ACGACCTGAGCCTCGAAAGT
61.180
55.000
4.99
0.00
33.96
2.66
931
2216
0.526662
ACCTGAGCCTCGAAAGTACG
59.473
55.000
0.00
0.00
0.00
3.67
932
2217
0.179134
CCTGAGCCTCGAAAGTACGG
60.179
60.000
0.00
0.00
0.00
4.02
937
2222
1.880819
GCCTCGAAAGTACGGGTGGA
61.881
60.000
0.00
0.00
31.23
4.02
944
2229
0.408700
AAGTACGGGTGGAGGAGAGT
59.591
55.000
0.00
0.00
0.00
3.24
945
2230
0.323542
AGTACGGGTGGAGGAGAGTG
60.324
60.000
0.00
0.00
0.00
3.51
946
2231
1.000019
TACGGGTGGAGGAGAGTGG
60.000
63.158
0.00
0.00
0.00
4.00
947
2232
1.797018
TACGGGTGGAGGAGAGTGGT
61.797
60.000
0.00
0.00
0.00
4.16
956
2241
2.236644
GGAGGAGAGTGGTTTAGGGTTC
59.763
54.545
0.00
0.00
0.00
3.62
957
2242
1.900486
AGGAGAGTGGTTTAGGGTTCG
59.100
52.381
0.00
0.00
0.00
3.95
958
2243
1.622312
GGAGAGTGGTTTAGGGTTCGT
59.378
52.381
0.00
0.00
0.00
3.85
959
2244
2.353505
GGAGAGTGGTTTAGGGTTCGTC
60.354
54.545
0.00
0.00
0.00
4.20
962
2247
1.071228
AGTGGTTTAGGGTTCGTCCAC
59.929
52.381
0.00
0.00
43.61
4.02
965
2250
2.148768
GGTTTAGGGTTCGTCCACAAG
58.851
52.381
2.42
0.00
38.11
3.16
966
2251
1.534163
GTTTAGGGTTCGTCCACAAGC
59.466
52.381
2.42
0.00
38.11
4.01
974
2259
1.520787
CGTCCACAAGCCCCGATAC
60.521
63.158
0.00
0.00
0.00
2.24
976
2261
1.117150
GTCCACAAGCCCCGATACTA
58.883
55.000
0.00
0.00
0.00
1.82
980
2265
2.550208
CCACAAGCCCCGATACTATTCC
60.550
54.545
0.00
0.00
0.00
3.01
983
2268
3.394606
ACAAGCCCCGATACTATTCCATT
59.605
43.478
0.00
0.00
0.00
3.16
987
2272
2.618045
CCCCGATACTATTCCATTGGGC
60.618
54.545
2.09
0.00
42.57
5.36
1012
2297
2.552315
GGTTTCGAGATGGCTTCAAACA
59.448
45.455
13.25
0.00
32.05
2.83
1014
2299
4.499019
GGTTTCGAGATGGCTTCAAACAAA
60.499
41.667
13.25
2.00
32.05
2.83
1015
2300
3.896648
TCGAGATGGCTTCAAACAAAC
57.103
42.857
3.03
0.00
0.00
2.93
1022
2307
1.679153
GGCTTCAAACAAACCTTCGGA
59.321
47.619
0.00
0.00
0.00
4.55
1023
2308
2.296190
GGCTTCAAACAAACCTTCGGAT
59.704
45.455
0.00
0.00
0.00
4.18
1027
2312
3.745799
TCAAACAAACCTTCGGATGCTA
58.254
40.909
0.00
0.00
0.00
3.49
1030
2315
3.418684
ACAAACCTTCGGATGCTACTT
57.581
42.857
0.00
0.00
0.00
2.24
1032
2317
3.244422
ACAAACCTTCGGATGCTACTTCA
60.244
43.478
0.00
0.00
0.00
3.02
1050
2335
4.496336
GCAGGGGCGCAGGAGATT
62.496
66.667
10.83
0.00
0.00
2.40
1056
2341
1.227380
GGCGCAGGAGATTGACGAT
60.227
57.895
10.83
0.00
0.00
3.73
1059
2344
0.926155
CGCAGGAGATTGACGATGTG
59.074
55.000
0.00
0.00
0.00
3.21
1063
2348
3.193263
CAGGAGATTGACGATGTGGAAG
58.807
50.000
0.00
0.00
0.00
3.46
1085
2370
3.028850
CAATGATGCAGGAATTGGGTCT
58.971
45.455
9.74
0.00
0.00
3.85
1087
2372
3.173953
TGATGCAGGAATTGGGTCTTT
57.826
42.857
0.00
0.00
0.00
2.52
1089
2374
1.631405
TGCAGGAATTGGGTCTTTGG
58.369
50.000
0.00
0.00
0.00
3.28
1113
2398
2.366916
GGAGGACCTAGATGATGTGGTG
59.633
54.545
0.00
0.00
32.30
4.17
1117
2402
3.941483
GGACCTAGATGATGTGGTGTTTG
59.059
47.826
0.00
0.00
32.30
2.93
1125
2410
4.097551
TGATGTGGTGTTTGATGAGGAA
57.902
40.909
0.00
0.00
0.00
3.36
1126
2411
4.665451
TGATGTGGTGTTTGATGAGGAAT
58.335
39.130
0.00
0.00
0.00
3.01
1128
2413
4.371624
TGTGGTGTTTGATGAGGAATCT
57.628
40.909
0.00
0.00
36.15
2.40
1137
2422
1.211457
GATGAGGAATCTGCACCACCT
59.789
52.381
0.00
0.00
32.01
4.00
1139
2424
0.326264
GAGGAATCTGCACCACCTGT
59.674
55.000
0.00
0.00
0.00
4.00
1155
2440
4.175337
GTGGCTGCCCGCTGGATA
62.175
66.667
17.53
0.00
38.62
2.59
1177
2462
0.034186
CCTGGCTAGGGTTCATTGCA
60.034
55.000
8.57
0.00
40.63
4.08
1188
2473
3.554129
GGGTTCATTGCACCAAAACCTAC
60.554
47.826
7.78
1.71
35.65
3.18
1191
2476
2.295909
TCATTGCACCAAAACCTACAGC
59.704
45.455
0.00
0.00
0.00
4.40
1205
2490
3.844211
ACCTACAGCCAATTCTGGTTCTA
59.156
43.478
0.00
0.00
45.53
2.10
1224
2509
1.800805
ACAGGAACATGAGAACAGCG
58.199
50.000
0.00
0.00
0.00
5.18
1228
2513
1.608025
GGAACATGAGAACAGCGTGGA
60.608
52.381
0.00
0.00
0.00
4.02
1236
2521
0.955428
GAACAGCGTGGAATCTGGCA
60.955
55.000
0.00
0.00
34.76
4.92
1258
2543
2.943033
CAAGAGGTGAAGTTCAAACCGT
59.057
45.455
7.25
0.00
39.07
4.83
1272
2557
2.185004
AACCGTTGGAGGACAATCTG
57.815
50.000
0.00
0.00
41.95
2.90
1279
2564
3.961480
TGGAGGACAATCTGTACACAG
57.039
47.619
2.84
2.84
45.08
3.66
1281
2566
3.646162
TGGAGGACAATCTGTACACAGTT
59.354
43.478
9.11
0.00
44.12
3.16
1311
2596
2.124151
CTTGGGGATTGGGAGCGG
60.124
66.667
0.00
0.00
0.00
5.52
1312
2597
2.612430
TTGGGGATTGGGAGCGGA
60.612
61.111
0.00
0.00
0.00
5.54
1315
2600
0.696143
TGGGGATTGGGAGCGGATTA
60.696
55.000
0.00
0.00
0.00
1.75
1320
2605
2.548920
GGATTGGGAGCGGATTACTCAG
60.549
54.545
0.00
0.00
35.79
3.35
1326
2611
1.757699
GAGCGGATTACTCAGGAAGGT
59.242
52.381
0.00
0.00
34.18
3.50
1329
2614
2.108168
CGGATTACTCAGGAAGGTCCA
58.892
52.381
0.00
0.00
39.61
4.02
1331
2616
3.493350
CGGATTACTCAGGAAGGTCCATG
60.493
52.174
0.00
0.00
39.61
3.66
1332
2617
3.181450
GGATTACTCAGGAAGGTCCATGG
60.181
52.174
4.97
4.97
39.61
3.66
1341
2626
2.026262
GGAAGGTCCATGGCACTTTAGA
60.026
50.000
18.11
0.00
36.28
2.10
1348
2633
4.345257
GTCCATGGCACTTTAGAGGAGATA
59.655
45.833
6.96
0.00
0.00
1.98
1353
2638
7.445121
CATGGCACTTTAGAGGAGATATTGTA
58.555
38.462
0.00
0.00
0.00
2.41
1356
2641
9.154632
TGGCACTTTAGAGGAGATATTGTAATA
57.845
33.333
0.00
0.00
0.00
0.98
1375
2660
2.747396
ACTAAAACCGTACGATGGCA
57.253
45.000
18.76
0.00
0.00
4.92
1395
2680
3.792401
CATAGCCAAACCATCGACAGTA
58.208
45.455
0.00
0.00
0.00
2.74
1397
2682
1.346395
AGCCAAACCATCGACAGTACA
59.654
47.619
0.00
0.00
0.00
2.90
1404
2689
2.497675
ACCATCGACAGTACAGCTTGAT
59.502
45.455
0.00
0.00
0.00
2.57
1405
2690
3.055819
ACCATCGACAGTACAGCTTGATT
60.056
43.478
0.00
0.00
0.00
2.57
1410
2695
3.553511
CGACAGTACAGCTTGATTCCATC
59.446
47.826
0.00
0.00
0.00
3.51
1413
2698
4.141846
ACAGTACAGCTTGATTCCATCGAT
60.142
41.667
0.00
0.00
0.00
3.59
1440
2725
2.539003
GCAAGTGCATGACGTACCA
58.461
52.632
0.00
0.00
41.59
3.25
1446
2731
0.973632
TGCATGACGTACCACCTCTT
59.026
50.000
0.00
0.00
0.00
2.85
1449
2734
3.196901
TGCATGACGTACCACCTCTTTAT
59.803
43.478
0.00
0.00
0.00
1.40
1470
2755
2.187946
CATCTGGTGCCGTCCCTC
59.812
66.667
0.00
0.00
0.00
4.30
2029
3322
4.069232
CCTCGCGCCAGAAGGACA
62.069
66.667
2.64
0.00
36.89
4.02
2125
3418
4.715523
CCACGCGACCCCCATGTT
62.716
66.667
15.93
0.00
0.00
2.71
2187
3480
3.080765
TCCCGCACCATGGTCGAT
61.081
61.111
27.55
2.78
0.00
3.59
2295
3588
2.690881
CCCTCCCCACCGATCCAA
60.691
66.667
0.00
0.00
0.00
3.53
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
318
332
5.116882
GCTATTGGAGACGGTCTTACAAAT
58.883
41.667
23.61
15.08
31.06
2.32
328
342
1.227674
GGGCTGCTATTGGAGACGG
60.228
63.158
0.00
0.00
40.96
4.79
330
344
3.778954
AATAGGGCTGCTATTGGAGAC
57.221
47.619
0.00
0.00
39.13
3.36
397
412
5.526115
AGATGACACTTGTTCATGCAAAAG
58.474
37.500
0.00
0.00
0.00
2.27
405
420
4.129380
CTGTTGGAGATGACACTTGTTCA
58.871
43.478
0.00
0.00
0.00
3.18
419
446
4.884164
CCTTTTATAGGGCTTCTGTTGGAG
59.116
45.833
0.00
0.00
40.67
3.86
445
472
4.227864
TCATGCCCAAAAAGGTGTTTTT
57.772
36.364
0.00
0.00
45.01
1.94
501
535
0.249398
ATATACTTGCCGCCGATCCC
59.751
55.000
0.00
0.00
0.00
3.85
505
539
0.317160
CCTCATATACTTGCCGCCGA
59.683
55.000
0.00
0.00
0.00
5.54
513
547
5.780793
CCCTAGCAGTAACCCTCATATACTT
59.219
44.000
0.00
0.00
0.00
2.24
527
561
1.960471
GCTCCTGTGACCCTAGCAGTA
60.960
57.143
0.00
0.00
33.38
2.74
530
564
0.618680
ATGCTCCTGTGACCCTAGCA
60.619
55.000
5.51
5.51
46.30
3.49
540
574
2.441532
GCCATGGCATGCTCCTGT
60.442
61.111
32.08
0.00
41.49
4.00
575
609
0.696143
TAAATCCCTGGATCCGCCCA
60.696
55.000
7.39
0.00
33.08
5.36
579
613
0.602905
GCCGTAAATCCCTGGATCCG
60.603
60.000
7.39
1.76
33.08
4.18
586
620
4.540735
CCGCGGCCGTAAATCCCT
62.541
66.667
28.70
0.00
0.00
4.20
618
652
1.750193
TCCCAAAAATGCGAGGCTAG
58.250
50.000
0.00
0.00
0.00
3.42
619
653
2.091541
CTTCCCAAAAATGCGAGGCTA
58.908
47.619
0.00
0.00
0.00
3.93
628
662
7.775561
AGAATATCTAGCGAACTTCCCAAAAAT
59.224
33.333
0.00
0.00
0.00
1.82
706
1990
4.141528
TGCATTTCATTTTTGTTGAGGGGT
60.142
37.500
0.00
0.00
0.00
4.95
732
2016
2.907458
AAAAGAATAGGCCCAGTGCT
57.093
45.000
0.00
0.00
40.92
4.40
762
2046
6.929049
TCACTCCCGTATCAAATTAGCATTAG
59.071
38.462
0.00
0.00
0.00
1.73
807
2091
1.148027
AGTCACCCTGAGAGGAACAGA
59.852
52.381
0.00
0.00
37.67
3.41
808
2092
1.638529
AGTCACCCTGAGAGGAACAG
58.361
55.000
0.00
0.00
37.67
3.16
810
2094
1.694696
ACAAGTCACCCTGAGAGGAAC
59.305
52.381
0.00
0.00
37.67
3.62
817
2101
2.741092
GGCGACAAGTCACCCTGA
59.259
61.111
0.72
0.00
0.00
3.86
818
2102
2.738521
CGGCGACAAGTCACCCTG
60.739
66.667
0.00
0.00
0.00
4.45
819
2103
4.681978
GCGGCGACAAGTCACCCT
62.682
66.667
12.98
0.00
0.00
4.34
823
2107
4.595538
AACGGCGGCGACAAGTCA
62.596
61.111
38.93
0.00
0.00
3.41
840
2124
0.937441
AGGTAGGGAGGCAGATCTCA
59.063
55.000
0.00
0.00
35.58
3.27
844
2128
0.189822
GGAGAGGTAGGGAGGCAGAT
59.810
60.000
0.00
0.00
0.00
2.90
862
2147
3.986054
TCCGGGGGAGATTGATGG
58.014
61.111
0.00
0.00
0.00
3.51
876
2161
4.492160
TAACCGCGAGCAGCTCCG
62.492
66.667
17.16
19.08
45.59
4.63
878
2163
2.583593
CCTAACCGCGAGCAGCTC
60.584
66.667
12.94
12.94
45.59
4.09
879
2164
4.148825
CCCTAACCGCGAGCAGCT
62.149
66.667
8.23
0.00
45.59
4.24
890
2175
0.838987
TCCCACCAGACACCCCTAAC
60.839
60.000
0.00
0.00
0.00
2.34
898
2183
2.200370
AGGTCGTCCCACCAGACA
59.800
61.111
0.00
0.00
39.16
3.41
903
2188
4.083862
GGCTCAGGTCGTCCCACC
62.084
72.222
0.00
0.00
36.58
4.61
912
2197
0.526662
CGTACTTTCGAGGCTCAGGT
59.473
55.000
15.95
5.10
0.00
4.00
917
2202
1.590147
CACCCGTACTTTCGAGGCT
59.410
57.895
0.00
0.00
0.00
4.58
919
2204
0.172803
CTCCACCCGTACTTTCGAGG
59.827
60.000
0.00
0.00
0.00
4.63
921
2206
0.251297
TCCTCCACCCGTACTTTCGA
60.251
55.000
0.00
0.00
0.00
3.71
922
2207
0.172803
CTCCTCCACCCGTACTTTCG
59.827
60.000
0.00
0.00
0.00
3.46
925
2210
0.408700
ACTCTCCTCCACCCGTACTT
59.591
55.000
0.00
0.00
0.00
2.24
926
2211
0.323542
CACTCTCCTCCACCCGTACT
60.324
60.000
0.00
0.00
0.00
2.73
928
2213
1.000019
CCACTCTCCTCCACCCGTA
60.000
63.158
0.00
0.00
0.00
4.02
931
2216
1.555533
CTAAACCACTCTCCTCCACCC
59.444
57.143
0.00
0.00
0.00
4.61
932
2217
1.555533
CCTAAACCACTCTCCTCCACC
59.444
57.143
0.00
0.00
0.00
4.61
937
2222
1.900486
CGAACCCTAAACCACTCTCCT
59.100
52.381
0.00
0.00
0.00
3.69
944
2229
1.129917
TGTGGACGAACCCTAAACCA
58.870
50.000
0.00
0.00
38.00
3.67
945
2230
2.148768
CTTGTGGACGAACCCTAAACC
58.851
52.381
0.00
0.00
38.00
3.27
946
2231
1.534163
GCTTGTGGACGAACCCTAAAC
59.466
52.381
0.00
0.00
38.00
2.01
947
2232
1.543871
GGCTTGTGGACGAACCCTAAA
60.544
52.381
0.00
0.00
38.00
1.85
956
2241
1.520787
GTATCGGGGCTTGTGGACG
60.521
63.158
0.00
0.00
0.00
4.79
957
2242
1.117150
TAGTATCGGGGCTTGTGGAC
58.883
55.000
0.00
0.00
0.00
4.02
958
2243
2.097110
ATAGTATCGGGGCTTGTGGA
57.903
50.000
0.00
0.00
0.00
4.02
959
2244
2.550208
GGAATAGTATCGGGGCTTGTGG
60.550
54.545
0.00
0.00
0.00
4.17
962
2247
3.703001
ATGGAATAGTATCGGGGCTTG
57.297
47.619
0.00
0.00
0.00
4.01
965
2250
2.618045
CCCAATGGAATAGTATCGGGGC
60.618
54.545
0.00
0.00
0.00
5.80
966
2251
2.618045
GCCCAATGGAATAGTATCGGGG
60.618
54.545
0.00
0.00
36.12
5.73
974
2259
3.884037
AACCCTAGCCCAATGGAATAG
57.116
47.619
0.00
2.22
0.00
1.73
976
2261
2.686715
CGAAACCCTAGCCCAATGGAAT
60.687
50.000
0.00
0.00
0.00
3.01
980
2265
1.209504
TCTCGAAACCCTAGCCCAATG
59.790
52.381
0.00
0.00
0.00
2.82
983
2268
0.830648
CATCTCGAAACCCTAGCCCA
59.169
55.000
0.00
0.00
0.00
5.36
987
2272
2.168521
TGAAGCCATCTCGAAACCCTAG
59.831
50.000
0.00
0.00
0.00
3.02
1027
2312
4.711949
CTGCGCCCCTGCTGAAGT
62.712
66.667
4.18
0.00
36.04
3.01
1039
2324
0.807667
ACATCGTCAATCTCCTGCGC
60.808
55.000
0.00
0.00
0.00
6.09
1041
2326
1.134699
TCCACATCGTCAATCTCCTGC
60.135
52.381
0.00
0.00
0.00
4.85
1050
2335
2.470983
TCATTGCTTCCACATCGTCA
57.529
45.000
0.00
0.00
0.00
4.35
1072
2357
2.450476
CTCCCAAAGACCCAATTCCTG
58.550
52.381
0.00
0.00
0.00
3.86
1085
2370
2.317900
TCATCTAGGTCCTCCTCCCAAA
59.682
50.000
0.00
0.00
43.94
3.28
1087
2372
1.620515
TCATCTAGGTCCTCCTCCCA
58.379
55.000
0.00
0.00
43.94
4.37
1089
2374
2.896685
CACATCATCTAGGTCCTCCTCC
59.103
54.545
0.00
0.00
43.94
4.30
1107
2392
4.074259
CAGATTCCTCATCAAACACCACA
58.926
43.478
0.00
0.00
33.75
4.17
1113
2398
3.084039
TGGTGCAGATTCCTCATCAAAC
58.916
45.455
0.00
0.00
33.75
2.93
1117
2402
1.211457
AGGTGGTGCAGATTCCTCATC
59.789
52.381
0.00
0.00
0.00
2.92
1161
2446
0.323360
TGGTGCAATGAACCCTAGCC
60.323
55.000
8.15
0.00
36.83
3.93
1173
2458
1.036707
GGCTGTAGGTTTTGGTGCAA
58.963
50.000
0.00
0.00
0.00
4.08
1177
2462
3.573967
CAGAATTGGCTGTAGGTTTTGGT
59.426
43.478
0.00
0.00
0.00
3.67
1205
2490
1.070758
ACGCTGTTCTCATGTTCCTGT
59.929
47.619
0.00
0.00
0.00
4.00
1212
2497
2.350804
CAGATTCCACGCTGTTCTCATG
59.649
50.000
0.00
0.00
0.00
3.07
1218
2503
1.073025
TGCCAGATTCCACGCTGTT
59.927
52.632
0.00
0.00
0.00
3.16
1219
2504
1.672356
GTGCCAGATTCCACGCTGT
60.672
57.895
0.00
0.00
0.00
4.40
1224
2509
1.271597
ACCTCTTGTGCCAGATTCCAC
60.272
52.381
0.00
0.00
0.00
4.02
1228
2513
2.107204
ACTTCACCTCTTGTGCCAGATT
59.893
45.455
0.00
0.00
45.03
2.40
1236
2521
2.943033
CGGTTTGAACTTCACCTCTTGT
59.057
45.455
0.00
0.00
0.00
3.16
1254
2539
1.056660
ACAGATTGTCCTCCAACGGT
58.943
50.000
0.00
0.00
35.44
4.83
1258
2543
3.646162
ACTGTGTACAGATTGTCCTCCAA
59.354
43.478
18.18
0.00
46.59
3.53
1272
2557
4.757149
AGGCAAGAGAATTGAACTGTGTAC
59.243
41.667
0.00
0.00
0.00
2.90
1279
2564
2.232208
CCCCAAGGCAAGAGAATTGAAC
59.768
50.000
0.00
0.00
0.00
3.18
1281
2566
1.710244
TCCCCAAGGCAAGAGAATTGA
59.290
47.619
0.00
0.00
0.00
2.57
1311
2596
3.745797
GCCATGGACCTTCCTGAGTAATC
60.746
52.174
18.40
0.00
37.46
1.75
1312
2597
2.173569
GCCATGGACCTTCCTGAGTAAT
59.826
50.000
18.40
0.00
37.46
1.89
1315
2600
0.842030
TGCCATGGACCTTCCTGAGT
60.842
55.000
18.40
0.00
37.46
3.41
1320
2605
2.026262
TCTAAAGTGCCATGGACCTTCC
60.026
50.000
18.40
0.00
36.96
3.46
1326
2611
2.832838
TCTCCTCTAAAGTGCCATGGA
58.167
47.619
18.40
0.00
0.00
3.41
1329
2614
6.506538
ACAATATCTCCTCTAAAGTGCCAT
57.493
37.500
0.00
0.00
0.00
4.40
1331
2616
9.425577
GTATTACAATATCTCCTCTAAAGTGCC
57.574
37.037
0.00
0.00
0.00
5.01
1348
2633
7.042523
GCCATCGTACGGTTTTAGTATTACAAT
60.043
37.037
16.52
0.00
0.00
2.71
1353
2638
4.757594
TGCCATCGTACGGTTTTAGTATT
58.242
39.130
16.52
0.00
0.00
1.89
1356
2641
2.747396
TGCCATCGTACGGTTTTAGT
57.253
45.000
16.52
0.00
0.00
2.24
1359
2644
1.937899
GCTATGCCATCGTACGGTTTT
59.062
47.619
16.52
0.00
0.00
2.43
1375
2660
3.196901
TGTACTGTCGATGGTTTGGCTAT
59.803
43.478
0.00
0.00
0.00
2.97
1380
2665
2.688507
AGCTGTACTGTCGATGGTTTG
58.311
47.619
1.46
0.00
0.00
2.93
1386
2671
3.195610
TGGAATCAAGCTGTACTGTCGAT
59.804
43.478
1.46
0.00
0.00
3.59
1389
2674
3.553511
CGATGGAATCAAGCTGTACTGTC
59.446
47.826
1.46
0.00
45.97
3.51
1395
2680
5.236282
CAGATATCGATGGAATCAAGCTGT
58.764
41.667
8.54
0.00
45.97
4.40
1397
2682
4.323333
CCCAGATATCGATGGAATCAAGCT
60.323
45.833
8.54
0.00
45.97
3.74
1404
2689
2.046292
TGCACCCAGATATCGATGGAA
58.954
47.619
8.54
0.00
39.02
3.53
1405
2690
1.715785
TGCACCCAGATATCGATGGA
58.284
50.000
8.54
1.57
39.02
3.41
1410
2695
0.940126
GCACTTGCACCCAGATATCG
59.060
55.000
0.00
0.00
41.59
2.92
1434
2719
1.208535
TGGGCATAAAGAGGTGGTACG
59.791
52.381
0.00
0.00
0.00
3.67
1437
2722
2.092212
CAGATGGGCATAAAGAGGTGGT
60.092
50.000
0.00
0.00
0.00
4.16
1440
2725
2.092212
CACCAGATGGGCATAAAGAGGT
60.092
50.000
3.48
0.00
42.05
3.85
1446
2731
1.152984
CGGCACCAGATGGGCATAA
60.153
57.895
3.48
0.00
42.05
1.90
1449
2734
4.408821
GACGGCACCAGATGGGCA
62.409
66.667
3.48
0.00
42.05
5.36
1470
2755
1.334960
GGGTGTGACACTTTTGATGCG
60.335
52.381
16.07
0.00
34.40
4.73
1473
2758
3.073062
AGCTAGGGTGTGACACTTTTGAT
59.927
43.478
16.07
1.45
31.80
2.57
1474
2759
2.438021
AGCTAGGGTGTGACACTTTTGA
59.562
45.455
16.07
0.00
31.80
2.69
1923
3214
0.912006
GGTGGGCTTCCCTCTCTCTT
60.912
60.000
3.27
0.00
45.70
2.85
2122
3415
1.079490
AGTGAGGATGAGAGGGGAACA
59.921
52.381
0.00
0.00
0.00
3.18
2125
3418
1.010795
TGAGTGAGGATGAGAGGGGA
58.989
55.000
0.00
0.00
0.00
4.81
2366
3661
3.718210
GACCGGAGCGAGGCGAATT
62.718
63.158
9.46
0.00
0.00
2.17
2442
3737
1.535462
CAAACGCGTGGGAAAGAAGAT
59.465
47.619
14.98
0.00
0.00
2.40
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.