Multiple sequence alignment - TraesCS5A01G348800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G348800 chr5A 100.000 5252 0 0 1 5252 552265977 552271228 0.000000e+00 9699.0
1 TraesCS5A01G348800 chr5A 90.428 794 68 4 4467 5252 52218949 52219742 0.000000e+00 1038.0
2 TraesCS5A01G348800 chr5A 83.821 649 105 0 2827 3475 563255050 563254402 7.470000e-173 617.0
3 TraesCS5A01G348800 chr5A 79.514 864 147 17 1437 2273 563256422 563255562 5.860000e-164 588.0
4 TraesCS5A01G348800 chr5A 83.591 518 83 2 1437 1953 552298394 552298910 7.910000e-133 484.0
5 TraesCS5A01G348800 chr5A 90.256 195 11 4 4363 4550 328721355 328721162 1.130000e-61 248.0
6 TraesCS5A01G348800 chr5A 94.792 96 4 1 4313 4408 92431510 92431604 1.180000e-31 148.0
7 TraesCS5A01G348800 chr5A 83.582 134 22 0 9 142 369853658 369853791 5.520000e-25 126.0
8 TraesCS5A01G348800 chr5A 85.593 118 17 0 24 141 692326540 692326423 1.990000e-24 124.0
9 TraesCS5A01G348800 chr5D 94.200 1862 66 15 904 2750 436980468 436982302 0.000000e+00 2802.0
10 TraesCS5A01G348800 chr5D 94.708 1455 65 1 2767 4209 436982293 436983747 0.000000e+00 2250.0
11 TraesCS5A01G348800 chr5D 80.645 1240 208 19 1450 2670 445492360 445491134 0.000000e+00 931.0
12 TraesCS5A01G348800 chr5D 82.897 649 111 0 2827 3475 445404374 445403726 7.580000e-163 584.0
13 TraesCS5A01G348800 chr5D 81.790 637 107 6 2815 3444 445490919 445490285 4.660000e-145 525.0
14 TraesCS5A01G348800 chr5D 88.657 432 21 13 268 695 436979856 436980263 7.850000e-138 501.0
15 TraesCS5A01G348800 chr5D 82.983 523 89 0 1436 1958 553910501 553911023 1.710000e-129 473.0
16 TraesCS5A01G348800 chr5D 80.576 417 61 12 3644 4044 553912496 553912908 2.380000e-78 303.0
17 TraesCS5A01G348800 chr5D 77.758 553 81 23 3795 4319 437017247 437017785 8.550000e-78 302.0
18 TraesCS5A01G348800 chr5D 84.488 303 44 1 3747 4046 445490012 445489710 3.980000e-76 296.0
19 TraesCS5A01G348800 chr5D 76.411 496 92 11 3677 4152 445403673 445403183 1.460000e-60 244.0
20 TraesCS5A01G348800 chr5D 89.571 163 6 4 691 848 436980300 436980456 4.150000e-46 196.0
21 TraesCS5A01G348800 chr5D 87.324 142 18 0 1 142 450373187 450373328 4.210000e-36 163.0
22 TraesCS5A01G348800 chr5B 93.727 1642 68 17 1117 2750 531192088 531193702 0.000000e+00 2429.0
23 TraesCS5A01G348800 chr5B 93.613 1456 80 5 2767 4209 531193693 531195148 0.000000e+00 2161.0
24 TraesCS5A01G348800 chr5B 84.304 618 97 0 2827 3444 543244966 543244349 5.820000e-169 604.0
25 TraesCS5A01G348800 chr5B 83.176 636 100 4 2815 3444 543298651 543298017 4.560000e-160 575.0
26 TraesCS5A01G348800 chr5B 78.935 826 152 13 1437 2242 543246338 543245515 4.630000e-150 542.0
27 TraesCS5A01G348800 chr5B 95.833 312 12 1 3265 3576 531200477 531200787 2.180000e-138 503.0
28 TraesCS5A01G348800 chr5B 82.302 582 53 22 3578 4146 531202249 531202793 4.790000e-125 459.0
29 TraesCS5A01G348800 chr5B 81.006 537 94 6 1435 1964 543282510 543281975 2.260000e-113 420.0
30 TraesCS5A01G348800 chr5B 84.712 399 30 19 185 569 531190404 531190785 2.310000e-98 370.0
31 TraesCS5A01G348800 chr5B 77.875 574 116 9 2107 2670 543299438 543298866 3.890000e-91 346.0
32 TraesCS5A01G348800 chr5B 83.135 421 26 21 690 1102 531191659 531192042 5.040000e-90 342.0
33 TraesCS5A01G348800 chr5B 88.889 243 27 0 3804 4046 543297729 543297487 3.070000e-77 300.0
34 TraesCS5A01G348800 chr5B 77.117 555 81 25 3795 4319 531206719 531207257 4.010000e-71 279.0
35 TraesCS5A01G348800 chr5B 84.127 252 36 3 3799 4049 543244135 543243887 1.890000e-59 241.0
36 TraesCS5A01G348800 chr5B 86.555 119 15 1 24 142 474051487 474051604 4.270000e-26 130.0
37 TraesCS5A01G348800 chr5B 84.874 119 18 0 24 142 208704786 208704904 2.570000e-23 121.0
38 TraesCS5A01G348800 chr7A 90.880 943 38 17 4322 5252 119792724 119793630 0.000000e+00 1221.0
39 TraesCS5A01G348800 chr7A 91.613 465 36 3 4467 4928 119802574 119803038 1.590000e-179 640.0
40 TraesCS5A01G348800 chr7A 88.933 506 48 7 4424 4928 574117769 574118267 7.470000e-173 617.0
41 TraesCS5A01G348800 chr7A 93.264 386 14 1 4322 4695 119798086 119798471 4.590000e-155 558.0
42 TraesCS5A01G348800 chr7A 79.656 349 29 26 4322 4655 2381805 2381484 4.120000e-51 213.0
43 TraesCS5A01G348800 chr7A 83.951 243 13 13 4317 4550 2387208 2386983 5.330000e-50 209.0
44 TraesCS5A01G348800 chr1A 90.360 944 42 15 4321 5252 326207891 326206985 0.000000e+00 1194.0
45 TraesCS5A01G348800 chr1A 93.237 621 29 2 4321 4928 5071816 5071196 0.000000e+00 902.0
46 TraesCS5A01G348800 chr1A 94.872 156 8 0 5097 5252 5071174 5071019 1.460000e-60 244.0
47 TraesCS5A01G348800 chr4D 80.280 1288 211 29 1415 2670 1687296 1688572 0.000000e+00 931.0
48 TraesCS5A01G348800 chr4D 77.653 1159 206 34 1510 2632 2973625 2974766 0.000000e+00 656.0
49 TraesCS5A01G348800 chr3A 93.661 631 25 2 4320 4938 203992466 203991839 0.000000e+00 929.0
50 TraesCS5A01G348800 chr3A 84.116 831 95 20 4424 5252 35429230 35430025 0.000000e+00 769.0
51 TraesCS5A01G348800 chr3A 78.656 848 124 27 4418 5252 706929894 706929091 1.300000e-140 510.0
52 TraesCS5A01G348800 chr3A 91.829 257 8 3 4996 5252 203991543 203991300 3.890000e-91 346.0
53 TraesCS5A01G348800 chr6A 91.362 683 45 4 4459 5128 352155574 352156255 0.000000e+00 922.0
54 TraesCS5A01G348800 chr6A 81.116 842 115 27 4418 5250 381089442 381090248 7.420000e-178 634.0
55 TraesCS5A01G348800 chr6A 88.235 119 14 0 24 142 576223367 576223249 5.480000e-30 143.0
56 TraesCS5A01G348800 chr6A 93.617 47 1 2 140 184 48761420 48761466 9.440000e-08 69.4
57 TraesCS5A01G348800 chr1B 83.402 729 104 8 1438 2153 553015703 553014979 0.000000e+00 660.0
58 TraesCS5A01G348800 chr1B 82.770 621 107 0 2827 3447 553014248 553013628 5.940000e-154 555.0
59 TraesCS5A01G348800 chr1D 85.069 576 74 6 1450 2015 410460383 410459810 1.270000e-160 577.0
60 TraesCS5A01G348800 chr1D 82.268 626 103 4 2826 3444 410458679 410458055 7.740000e-148 534.0
61 TraesCS5A01G348800 chr7B 85.246 122 18 0 21 142 532154751 532154630 5.520000e-25 126.0
62 TraesCS5A01G348800 chr2A 85.714 119 17 0 24 142 752862093 752862211 5.520000e-25 126.0
63 TraesCS5A01G348800 chr4A 78.873 142 28 2 1 142 26766929 26766790 1.560000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G348800 chr5A 552265977 552271228 5251 False 9699.000000 9699 100.000000 1 5252 1 chr5A.!!$F4 5251
1 TraesCS5A01G348800 chr5A 52218949 52219742 793 False 1038.000000 1038 90.428000 4467 5252 1 chr5A.!!$F1 785
2 TraesCS5A01G348800 chr5A 563254402 563256422 2020 True 602.500000 617 81.667500 1437 3475 2 chr5A.!!$R3 2038
3 TraesCS5A01G348800 chr5A 552298394 552298910 516 False 484.000000 484 83.591000 1437 1953 1 chr5A.!!$F5 516
4 TraesCS5A01G348800 chr5D 436979856 436983747 3891 False 1437.250000 2802 91.784000 268 4209 4 chr5D.!!$F3 3941
5 TraesCS5A01G348800 chr5D 445489710 445492360 2650 True 584.000000 931 82.307667 1450 4046 3 chr5D.!!$R2 2596
6 TraesCS5A01G348800 chr5D 445403183 445404374 1191 True 414.000000 584 79.654000 2827 4152 2 chr5D.!!$R1 1325
7 TraesCS5A01G348800 chr5D 553910501 553912908 2407 False 388.000000 473 81.779500 1436 4044 2 chr5D.!!$F4 2608
8 TraesCS5A01G348800 chr5D 437017247 437017785 538 False 302.000000 302 77.758000 3795 4319 1 chr5D.!!$F1 524
9 TraesCS5A01G348800 chr5B 531190404 531195148 4744 False 1325.500000 2429 88.796750 185 4209 4 chr5B.!!$F3 4024
10 TraesCS5A01G348800 chr5B 543243887 543246338 2451 True 462.333333 604 82.455333 1437 4049 3 chr5B.!!$R2 2612
11 TraesCS5A01G348800 chr5B 543281975 543282510 535 True 420.000000 420 81.006000 1435 1964 1 chr5B.!!$R1 529
12 TraesCS5A01G348800 chr5B 531200477 531207257 6780 False 413.666667 503 85.084000 3265 4319 3 chr5B.!!$F4 1054
13 TraesCS5A01G348800 chr5B 543297487 543299438 1951 True 407.000000 575 83.313333 2107 4046 3 chr5B.!!$R3 1939
14 TraesCS5A01G348800 chr7A 119792724 119793630 906 False 1221.000000 1221 90.880000 4322 5252 1 chr7A.!!$F1 930
15 TraesCS5A01G348800 chr1A 326206985 326207891 906 True 1194.000000 1194 90.360000 4321 5252 1 chr1A.!!$R1 931
16 TraesCS5A01G348800 chr1A 5071019 5071816 797 True 573.000000 902 94.054500 4321 5252 2 chr1A.!!$R2 931
17 TraesCS5A01G348800 chr4D 1687296 1688572 1276 False 931.000000 931 80.280000 1415 2670 1 chr4D.!!$F1 1255
18 TraesCS5A01G348800 chr4D 2973625 2974766 1141 False 656.000000 656 77.653000 1510 2632 1 chr4D.!!$F2 1122
19 TraesCS5A01G348800 chr3A 35429230 35430025 795 False 769.000000 769 84.116000 4424 5252 1 chr3A.!!$F1 828
20 TraesCS5A01G348800 chr3A 203991300 203992466 1166 True 637.500000 929 92.745000 4320 5252 2 chr3A.!!$R2 932
21 TraesCS5A01G348800 chr3A 706929091 706929894 803 True 510.000000 510 78.656000 4418 5252 1 chr3A.!!$R1 834
22 TraesCS5A01G348800 chr6A 352155574 352156255 681 False 922.000000 922 91.362000 4459 5128 1 chr6A.!!$F2 669
23 TraesCS5A01G348800 chr6A 381089442 381090248 806 False 634.000000 634 81.116000 4418 5250 1 chr6A.!!$F3 832
24 TraesCS5A01G348800 chr1B 553013628 553015703 2075 True 607.500000 660 83.086000 1438 3447 2 chr1B.!!$R1 2009
25 TraesCS5A01G348800 chr1D 410458055 410460383 2328 True 555.500000 577 83.668500 1450 3444 2 chr1D.!!$R1 1994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 402 0.107945 GAGCCAGTGGACCTGATCAC 60.108 60.0 15.20 0.0 44.49 3.06 F
698 1450 0.179018 AACTGCCGGAGTGCTTCTTT 60.179 50.0 5.05 0.0 34.02 2.52 F
700 1452 0.603707 CTGCCGGAGTGCTTCTTTCA 60.604 55.0 5.05 0.0 0.00 2.69 F
2140 3240 0.250513 AAGATGAAGCGGTGGACCTC 59.749 55.0 0.00 0.0 0.00 3.85 F
3192 4340 0.179702 GGAGCATCAGCAGATCACCA 59.820 55.0 0.00 0.0 45.49 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 2361 0.035915 GGAAGAGGAGCCACTGAACC 60.036 60.0 0.00 0.0 0.00 3.62 R
2140 3240 0.877649 CAGGTTGATGATCGGCCTCG 60.878 60.0 0.00 0.0 37.82 4.63 R
2392 3534 2.859165 ATGCTTGTTTTCCCTCGAGA 57.141 45.0 15.71 0.0 0.00 4.04 R
3525 7061 0.030101 GCTCCTCGAGATGTCCTTCG 59.970 60.0 15.71 0.0 0.00 3.79 R
4295 8090 0.029300 ATGCGCGTTGGATATTGCAC 59.971 50.0 8.43 0.0 34.86 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.367023 GCGGCTCGGGTGTACACA 62.367 66.667 26.51 6.34 0.00 3.72
18 19 2.577059 CGGCTCGGGTGTACACAT 59.423 61.111 26.51 0.00 0.00 3.21
20 21 1.153429 GGCTCGGGTGTACACATCC 60.153 63.158 26.51 18.01 43.70 3.51
27 28 3.261981 GGGTGTACACATCCGAGATTT 57.738 47.619 26.51 0.00 37.40 2.17
28 29 2.936498 GGGTGTACACATCCGAGATTTG 59.064 50.000 26.51 0.00 37.40 2.32
29 30 2.351726 GGTGTACACATCCGAGATTTGC 59.648 50.000 26.51 1.52 0.00 3.68
30 31 3.000041 GTGTACACATCCGAGATTTGCA 59.000 45.455 21.14 0.00 0.00 4.08
31 32 3.623060 GTGTACACATCCGAGATTTGCAT 59.377 43.478 21.14 0.00 0.00 3.96
32 33 3.871006 TGTACACATCCGAGATTTGCATC 59.129 43.478 0.00 0.00 0.00 3.91
33 34 1.935873 ACACATCCGAGATTTGCATCG 59.064 47.619 0.42 0.42 38.65 3.84
34 35 1.935873 CACATCCGAGATTTGCATCGT 59.064 47.619 6.68 0.00 37.23 3.73
37 38 4.212004 CACATCCGAGATTTGCATCGTATT 59.788 41.667 6.68 0.00 37.23 1.89
39 40 4.794248 TCCGAGATTTGCATCGTATTTG 57.206 40.909 6.68 0.00 37.23 2.32
47 48 0.315059 GCATCGTATTTGCACGTCCG 60.315 55.000 0.00 0.00 42.51 4.79
48 49 1.273688 CATCGTATTTGCACGTCCGA 58.726 50.000 0.00 0.00 42.51 4.55
50 51 1.074319 TCGTATTTGCACGTCCGAGC 61.074 55.000 2.09 2.09 42.51 5.03
51 52 1.713830 GTATTTGCACGTCCGAGCC 59.286 57.895 6.65 0.00 0.00 4.70
53 54 0.320858 TATTTGCACGTCCGAGCCAA 60.321 50.000 6.65 2.67 0.00 4.52
54 55 1.577328 ATTTGCACGTCCGAGCCAAG 61.577 55.000 6.65 0.00 0.00 3.61
56 57 2.665185 GCACGTCCGAGCCAAGTT 60.665 61.111 0.00 0.00 0.00 2.66
57 58 2.954753 GCACGTCCGAGCCAAGTTG 61.955 63.158 0.00 0.00 0.00 3.16
58 59 1.594293 CACGTCCGAGCCAAGTTGT 60.594 57.895 1.45 0.00 0.00 3.32
59 60 1.145377 ACGTCCGAGCCAAGTTGTT 59.855 52.632 1.45 0.00 0.00 2.83
60 61 0.390124 ACGTCCGAGCCAAGTTGTTA 59.610 50.000 1.45 0.00 0.00 2.41
61 62 0.788391 CGTCCGAGCCAAGTTGTTAC 59.212 55.000 1.45 0.00 0.00 2.50
62 63 1.870580 CGTCCGAGCCAAGTTGTTACA 60.871 52.381 1.45 0.00 0.00 2.41
63 64 1.529865 GTCCGAGCCAAGTTGTTACAC 59.470 52.381 1.45 0.00 0.00 2.90
64 65 0.872388 CCGAGCCAAGTTGTTACACC 59.128 55.000 1.45 0.00 0.00 4.16
66 67 0.872388 GAGCCAAGTTGTTACACCGG 59.128 55.000 0.00 0.00 0.00 5.28
67 68 0.181824 AGCCAAGTTGTTACACCGGT 59.818 50.000 0.00 0.00 0.00 5.28
68 69 1.026584 GCCAAGTTGTTACACCGGTT 58.973 50.000 2.97 0.00 0.00 4.44
69 70 1.002142 GCCAAGTTGTTACACCGGTTC 60.002 52.381 2.97 0.00 0.00 3.62
70 71 2.290464 CCAAGTTGTTACACCGGTTCA 58.710 47.619 2.97 0.00 0.00 3.18
71 72 2.683867 CCAAGTTGTTACACCGGTTCAA 59.316 45.455 2.97 5.74 0.00 2.69
72 73 3.316868 CCAAGTTGTTACACCGGTTCAAT 59.683 43.478 2.97 0.00 0.00 2.57
73 74 4.286910 CAAGTTGTTACACCGGTTCAATG 58.713 43.478 2.97 0.00 0.00 2.82
74 75 3.547746 AGTTGTTACACCGGTTCAATGT 58.452 40.909 2.97 1.10 0.00 2.71
75 76 3.949113 AGTTGTTACACCGGTTCAATGTT 59.051 39.130 2.97 0.00 0.00 2.71
76 77 4.399934 AGTTGTTACACCGGTTCAATGTTT 59.600 37.500 2.97 0.00 0.00 2.83
77 78 4.294416 TGTTACACCGGTTCAATGTTTG 57.706 40.909 2.97 0.00 0.00 2.93
79 80 4.201930 TGTTACACCGGTTCAATGTTTGTC 60.202 41.667 2.97 0.00 0.00 3.18
80 81 1.332375 ACACCGGTTCAATGTTTGTCG 59.668 47.619 2.97 0.00 0.00 4.35
81 82 0.309612 ACCGGTTCAATGTTTGTCGC 59.690 50.000 0.00 0.00 0.00 5.19
83 84 1.268794 CCGGTTCAATGTTTGTCGCAA 60.269 47.619 0.00 0.00 0.00 4.85
84 85 2.043411 CGGTTCAATGTTTGTCGCAAG 58.957 47.619 0.00 0.00 0.00 4.01
85 86 2.540769 CGGTTCAATGTTTGTCGCAAGT 60.541 45.455 0.00 0.00 39.48 3.16
86 87 3.443976 GGTTCAATGTTTGTCGCAAGTT 58.556 40.909 0.00 0.00 39.48 2.66
88 89 4.351192 GTTCAATGTTTGTCGCAAGTTCT 58.649 39.130 0.00 0.00 39.48 3.01
89 90 5.504994 GGTTCAATGTTTGTCGCAAGTTCTA 60.505 40.000 0.00 0.00 39.48 2.10
94 95 2.526304 TTGTCGCAAGTTCTAGCACT 57.474 45.000 0.00 0.00 39.48 4.40
96 97 3.653539 TGTCGCAAGTTCTAGCACTAA 57.346 42.857 0.00 0.00 39.48 2.24
98 99 3.987868 TGTCGCAAGTTCTAGCACTAAAG 59.012 43.478 0.00 0.00 39.48 1.85
99 100 3.988517 GTCGCAAGTTCTAGCACTAAAGT 59.011 43.478 0.00 0.00 39.48 2.66
100 101 3.987868 TCGCAAGTTCTAGCACTAAAGTG 59.012 43.478 5.73 5.73 43.51 3.16
101 102 4.261867 TCGCAAGTTCTAGCACTAAAGTGA 60.262 41.667 14.21 0.00 43.41 3.41
102 103 6.298562 TCGCAAGTTCTAGCACTAAAGTGAC 61.299 44.000 14.21 5.52 43.41 3.67
114 115 3.936453 ACTAAAGTGACTGTTTGCGTCAA 59.064 39.130 0.00 0.00 42.45 3.18
115 116 3.405170 AAAGTGACTGTTTGCGTCAAG 57.595 42.857 0.00 0.00 42.45 3.02
116 117 2.024176 AGTGACTGTTTGCGTCAAGT 57.976 45.000 0.00 0.00 42.45 3.16
117 118 2.356135 AGTGACTGTTTGCGTCAAGTT 58.644 42.857 0.00 0.00 42.45 2.66
121 122 4.728608 GTGACTGTTTGCGTCAAGTTTAAG 59.271 41.667 0.00 0.00 42.45 1.85
122 123 3.691498 ACTGTTTGCGTCAAGTTTAAGC 58.309 40.909 0.00 0.00 0.00 3.09
123 124 3.127895 ACTGTTTGCGTCAAGTTTAAGCA 59.872 39.130 0.00 0.00 35.90 3.91
124 125 3.430931 TGTTTGCGTCAAGTTTAAGCAC 58.569 40.909 0.00 0.00 37.57 4.40
125 126 3.127895 TGTTTGCGTCAAGTTTAAGCACT 59.872 39.130 0.00 0.00 37.57 4.40
127 128 4.461992 TTGCGTCAAGTTTAAGCACTAC 57.538 40.909 0.00 0.00 37.57 2.73
128 129 2.803956 TGCGTCAAGTTTAAGCACTACC 59.196 45.455 0.00 0.00 32.43 3.18
129 130 2.159881 GCGTCAAGTTTAAGCACTACCG 60.160 50.000 0.00 0.00 0.00 4.02
130 131 2.159881 CGTCAAGTTTAAGCACTACCGC 60.160 50.000 0.00 0.00 0.00 5.68
131 132 3.064931 GTCAAGTTTAAGCACTACCGCT 58.935 45.455 0.00 0.00 46.67 5.52
132 133 3.064207 TCAAGTTTAAGCACTACCGCTG 58.936 45.455 0.00 0.00 42.89 5.18
133 134 2.806244 CAAGTTTAAGCACTACCGCTGT 59.194 45.455 0.00 0.00 42.89 4.40
134 135 3.947910 AGTTTAAGCACTACCGCTGTA 57.052 42.857 0.00 0.00 42.89 2.74
136 137 4.828829 AGTTTAAGCACTACCGCTGTAAT 58.171 39.130 0.00 0.00 42.89 1.89
137 138 5.243207 AGTTTAAGCACTACCGCTGTAATT 58.757 37.500 0.00 0.00 42.89 1.40
138 139 5.121768 AGTTTAAGCACTACCGCTGTAATTG 59.878 40.000 0.00 0.00 42.89 2.32
139 140 3.328382 AAGCACTACCGCTGTAATTGA 57.672 42.857 0.00 0.00 42.89 2.57
142 143 2.348666 GCACTACCGCTGTAATTGACTG 59.651 50.000 0.00 0.00 0.00 3.51
143 144 3.585862 CACTACCGCTGTAATTGACTGT 58.414 45.455 0.00 0.00 0.00 3.55
144 145 3.367932 CACTACCGCTGTAATTGACTGTG 59.632 47.826 0.00 0.00 37.28 3.66
145 146 2.543777 ACCGCTGTAATTGACTGTGT 57.456 45.000 0.00 0.00 36.15 3.72
146 147 2.846193 ACCGCTGTAATTGACTGTGTT 58.154 42.857 0.00 0.00 36.15 3.32
147 148 3.211045 ACCGCTGTAATTGACTGTGTTT 58.789 40.909 0.00 0.00 36.15 2.83
149 150 4.097286 ACCGCTGTAATTGACTGTGTTTTT 59.903 37.500 0.00 0.00 36.15 1.94
213 214 4.554723 CGTTCCAAGTGAGAATCCAACAAC 60.555 45.833 0.00 0.00 0.00 3.32
215 216 3.882888 TCCAAGTGAGAATCCAACAACAC 59.117 43.478 0.00 0.00 0.00 3.32
216 217 3.004734 CCAAGTGAGAATCCAACAACACC 59.995 47.826 0.00 0.00 0.00 4.16
217 218 2.863809 AGTGAGAATCCAACAACACCC 58.136 47.619 0.00 0.00 0.00 4.61
305 313 2.507102 CGTACGCAGGCACCAGAG 60.507 66.667 0.52 0.00 0.00 3.35
320 328 2.098680 GAGACAGACTCGTCGGCG 59.901 66.667 1.15 1.15 40.98 6.46
391 399 1.997874 GGGAGCCAGTGGACCTGAT 60.998 63.158 15.20 0.00 44.49 2.90
392 400 1.524482 GGAGCCAGTGGACCTGATC 59.476 63.158 15.20 0.00 44.49 2.92
393 401 1.267574 GGAGCCAGTGGACCTGATCA 61.268 60.000 15.20 0.00 44.49 2.92
394 402 0.107945 GAGCCAGTGGACCTGATCAC 60.108 60.000 15.20 0.00 44.49 3.06
395 403 1.078143 GCCAGTGGACCTGATCACC 60.078 63.158 15.20 0.00 44.49 4.02
398 406 0.826715 CAGTGGACCTGATCACCGAT 59.173 55.000 0.00 0.00 44.49 4.18
479 505 3.022914 GGCGATTACGACGAGCCG 61.023 66.667 0.00 0.53 42.66 5.52
481 507 2.711311 CGATTACGACGAGCCGGA 59.289 61.111 5.05 0.00 42.66 5.14
482 508 1.281960 CGATTACGACGAGCCGGAT 59.718 57.895 5.05 0.00 42.66 4.18
641 1393 2.681848 CCTGAACTCCTGATACGTACGT 59.318 50.000 25.98 25.98 0.00 3.57
643 1395 4.260538 CCTGAACTCCTGATACGTACGTAC 60.261 50.000 28.99 21.48 33.01 3.67
644 1396 3.623060 TGAACTCCTGATACGTACGTACC 59.377 47.826 28.99 21.41 33.01 3.34
646 1398 4.672587 ACTCCTGATACGTACGTACCTA 57.327 45.455 28.99 16.86 33.01 3.08
648 1400 3.393800 TCCTGATACGTACGTACCTAGC 58.606 50.000 28.99 13.46 33.01 3.42
650 1402 3.812053 CCTGATACGTACGTACCTAGCTT 59.188 47.826 28.99 12.46 33.01 3.74
695 1447 1.004440 AGAACTGCCGGAGTGCTTC 60.004 57.895 5.05 0.95 37.24 3.86
697 1449 0.603975 GAACTGCCGGAGTGCTTCTT 60.604 55.000 5.05 0.00 34.02 2.52
698 1450 0.179018 AACTGCCGGAGTGCTTCTTT 60.179 50.000 5.05 0.00 34.02 2.52
699 1451 0.603975 ACTGCCGGAGTGCTTCTTTC 60.604 55.000 5.05 0.00 31.75 2.62
700 1452 0.603707 CTGCCGGAGTGCTTCTTTCA 60.604 55.000 5.05 0.00 0.00 2.69
754 1549 5.768980 TGGAGATTTGGATTCTCTCACTT 57.231 39.130 0.00 0.00 39.65 3.16
772 1567 4.560128 CACTTGTGAGTGCATACTGTAGT 58.440 43.478 0.00 0.00 46.08 2.73
773 1568 5.709966 CACTTGTGAGTGCATACTGTAGTA 58.290 41.667 0.00 0.00 46.08 1.82
774 1569 5.573282 CACTTGTGAGTGCATACTGTAGTAC 59.427 44.000 0.00 0.00 46.08 2.73
851 1657 6.852420 ACTTGAGTATTTAGGAGTAGCACA 57.148 37.500 0.00 0.00 0.00 4.57
852 1658 7.425224 ACTTGAGTATTTAGGAGTAGCACAT 57.575 36.000 0.00 0.00 0.00 3.21
853 1659 8.534954 ACTTGAGTATTTAGGAGTAGCACATA 57.465 34.615 0.00 0.00 0.00 2.29
854 1660 9.148879 ACTTGAGTATTTAGGAGTAGCACATAT 57.851 33.333 0.00 0.00 0.00 1.78
895 1701 2.815211 GAGCTGCAATGGCGACGA 60.815 61.111 1.02 0.00 45.35 4.20
907 1713 3.198409 TGGCGACGACCTCTACTATTA 57.802 47.619 0.00 0.00 0.00 0.98
908 1714 3.748083 TGGCGACGACCTCTACTATTAT 58.252 45.455 0.00 0.00 0.00 1.28
909 1715 4.139786 TGGCGACGACCTCTACTATTATT 58.860 43.478 0.00 0.00 0.00 1.40
910 1716 5.308014 TGGCGACGACCTCTACTATTATTA 58.692 41.667 0.00 0.00 0.00 0.98
911 1717 5.410746 TGGCGACGACCTCTACTATTATTAG 59.589 44.000 0.00 0.00 0.00 1.73
912 1718 5.411053 GGCGACGACCTCTACTATTATTAGT 59.589 44.000 0.00 3.02 41.57 2.24
913 1719 6.591834 GGCGACGACCTCTACTATTATTAGTA 59.408 42.308 0.00 4.81 39.42 1.82
914 1720 7.279758 GGCGACGACCTCTACTATTATTAGTAT 59.720 40.741 0.00 0.00 39.58 2.12
952 1758 2.159382 TCAGGGATGGCGAAAAGAAAC 58.841 47.619 0.00 0.00 0.00 2.78
992 1806 1.476891 TCAGAGGAGCCGTGTTGATAC 59.523 52.381 0.00 0.00 0.00 2.24
993 1807 1.478510 CAGAGGAGCCGTGTTGATACT 59.521 52.381 0.00 0.00 0.00 2.12
995 1809 2.093973 AGAGGAGCCGTGTTGATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
996 1810 1.899814 AGGAGCCGTGTTGATACTTGA 59.100 47.619 0.00 0.00 0.00 3.02
997 1811 2.501723 AGGAGCCGTGTTGATACTTGAT 59.498 45.455 0.00 0.00 0.00 2.57
998 1812 3.704566 AGGAGCCGTGTTGATACTTGATA 59.295 43.478 0.00 0.00 0.00 2.15
1055 1872 8.976986 ACAGAAAAATTCAGCTAACATGATTC 57.023 30.769 0.00 0.00 0.00 2.52
1069 1886 9.474249 GCTAACATGATTCTTTAAAGTAACGAC 57.526 33.333 14.74 3.66 0.00 4.34
1171 2024 2.607187 CGACGACTTGAGGTTGCTAAT 58.393 47.619 0.00 0.00 32.66 1.73
1173 2026 2.673368 GACGACTTGAGGTTGCTAATGG 59.327 50.000 0.00 0.00 32.66 3.16
1175 2028 2.932614 CGACTTGAGGTTGCTAATGGAG 59.067 50.000 0.00 0.00 0.00 3.86
1176 2029 3.617531 CGACTTGAGGTTGCTAATGGAGT 60.618 47.826 0.00 0.00 0.00 3.85
1177 2030 4.381612 CGACTTGAGGTTGCTAATGGAGTA 60.382 45.833 0.00 0.00 0.00 2.59
1178 2031 5.488341 GACTTGAGGTTGCTAATGGAGTAA 58.512 41.667 0.00 0.00 0.00 2.24
1188 2041 3.559384 GCTAATGGAGTAATGGTAGGGGC 60.559 52.174 0.00 0.00 0.00 5.80
1189 2042 1.056660 ATGGAGTAATGGTAGGGGCG 58.943 55.000 0.00 0.00 0.00 6.13
1233 2086 3.491964 GCCCAACGGAAAACTTAGCTTTT 60.492 43.478 0.00 0.00 0.00 2.27
1302 2156 5.535783 TGTCCAATTGTCTGTGTGAATTGAT 59.464 36.000 4.43 0.00 38.72 2.57
1507 2361 2.045536 GTCCTGGGCAGCCTCTTG 60.046 66.667 12.43 0.00 0.00 3.02
1573 2427 2.342406 TCCCTTCCTGGTTCAGATCA 57.658 50.000 0.00 0.00 32.44 2.92
1765 2628 2.805671 TGCGTACAACATTGAGGACAAG 59.194 45.455 0.00 0.00 39.46 3.16
1979 2869 2.060980 GCTCCGAGGAGGACCACAT 61.061 63.158 19.64 0.00 45.98 3.21
2081 3133 4.210331 AGCACAAGAAAGTGATGGAGTTT 58.790 39.130 0.00 0.00 42.05 2.66
2140 3240 0.250513 AAGATGAAGCGGTGGACCTC 59.749 55.000 0.00 0.00 0.00 3.85
2392 3534 4.079730 GGTATCCTGAAATCCTTCTGGGTT 60.080 45.833 9.94 0.00 45.94 4.11
2745 3893 1.606531 GATCTCTGGTTGCTGGCCT 59.393 57.895 3.32 0.00 0.00 5.19
2746 3894 0.833287 GATCTCTGGTTGCTGGCCTA 59.167 55.000 3.32 0.00 0.00 3.93
2747 3895 1.419387 GATCTCTGGTTGCTGGCCTAT 59.581 52.381 3.32 0.00 0.00 2.57
2748 3896 2.174685 TCTCTGGTTGCTGGCCTATA 57.825 50.000 3.32 0.00 0.00 1.31
2749 3897 2.694397 TCTCTGGTTGCTGGCCTATAT 58.306 47.619 3.32 0.00 0.00 0.86
2750 3898 2.369860 TCTCTGGTTGCTGGCCTATATG 59.630 50.000 3.32 0.00 0.00 1.78
2751 3899 2.369860 CTCTGGTTGCTGGCCTATATGA 59.630 50.000 3.32 0.00 0.00 2.15
2752 3900 2.777114 TCTGGTTGCTGGCCTATATGAA 59.223 45.455 3.32 0.00 0.00 2.57
2753 3901 2.880890 CTGGTTGCTGGCCTATATGAAC 59.119 50.000 3.32 0.00 0.00 3.18
2754 3902 2.240921 TGGTTGCTGGCCTATATGAACA 59.759 45.455 3.32 0.00 0.00 3.18
2755 3903 2.618709 GGTTGCTGGCCTATATGAACAC 59.381 50.000 3.32 0.00 0.00 3.32
2757 3905 0.868406 GCTGGCCTATATGAACACGC 59.132 55.000 3.32 0.00 0.00 5.34
2761 3909 3.348119 TGGCCTATATGAACACGCAAAA 58.652 40.909 3.32 0.00 0.00 2.44
2762 3910 3.759086 TGGCCTATATGAACACGCAAAAA 59.241 39.130 3.32 0.00 0.00 1.94
2763 3911 4.102649 GGCCTATATGAACACGCAAAAAC 58.897 43.478 0.00 0.00 0.00 2.43
2766 3914 5.060446 GCCTATATGAACACGCAAAAACAAC 59.940 40.000 0.00 0.00 0.00 3.32
2767 3915 6.378582 CCTATATGAACACGCAAAAACAACT 58.621 36.000 0.00 0.00 0.00 3.16
2769 3917 2.600731 TGAACACGCAAAAACAACTGG 58.399 42.857 0.00 0.00 0.00 4.00
2770 3918 1.323235 GAACACGCAAAAACAACTGGC 59.677 47.619 0.00 0.00 0.00 4.85
2771 3919 0.459411 ACACGCAAAAACAACTGGCC 60.459 50.000 0.00 0.00 0.00 5.36
2782 3930 4.382386 AACAACTGGCCTTATTGGTAGT 57.618 40.909 3.32 0.00 37.10 2.73
2794 3942 6.514063 CCTTATTGGTAGTCTACTAAGTGCC 58.486 44.000 13.48 0.00 32.58 5.01
2796 3944 3.752359 TGGTAGTCTACTAAGTGCCCT 57.248 47.619 9.85 0.00 0.00 5.19
3192 4340 0.179702 GGAGCATCAGCAGATCACCA 59.820 55.000 0.00 0.00 45.49 4.17
3217 4365 2.031314 CGCCACTGCTCAATGTATTCAG 59.969 50.000 0.00 0.00 34.43 3.02
3245 4393 3.520862 GCGATGGCCATGGGTGTG 61.521 66.667 26.56 6.64 0.00 3.82
3450 6986 6.648192 TCAAGAAGATTTTCAAGGCCAAAAA 58.352 32.000 5.01 9.35 35.70 1.94
3525 7061 1.081442 CGGAAGAAAAGCAACGGCC 60.081 57.895 0.00 0.00 42.56 6.13
3529 7065 0.310854 AAGAAAAGCAACGGCCGAAG 59.689 50.000 35.90 24.08 42.56 3.79
3557 7093 3.422417 CGAGGAGCGAAGATTCAGTTA 57.578 47.619 0.00 0.00 44.57 2.24
3598 7134 1.134965 GTGTCGAAGTGGATCCTCAGG 60.135 57.143 14.23 3.07 0.00 3.86
3626 7162 2.223805 GGCTCACTTTGTTGGAAGGTTG 60.224 50.000 0.00 0.00 0.00 3.77
3628 7164 1.754226 TCACTTTGTTGGAAGGTTGGC 59.246 47.619 0.00 0.00 0.00 4.52
3635 7171 2.909965 GGAAGGTTGGCAACGGCA 60.910 61.111 22.95 0.00 43.71 5.69
3643 7179 1.804396 TTGGCAACGGCATGTCCAAG 61.804 55.000 0.00 0.00 43.71 3.61
3650 7186 0.533755 CGGCATGTCCAAGGAGATCC 60.534 60.000 0.00 1.22 34.01 3.36
3663 7199 1.474143 GGAGATCCTCAAGGCCGAAAG 60.474 57.143 0.00 0.00 34.44 2.62
3716 7252 4.645535 TGTGCAGATAATAATCTCCAGGC 58.354 43.478 0.00 0.00 40.65 4.85
3723 7259 1.138568 ATAATCTCCAGGCTGCAGCT 58.861 50.000 35.82 20.32 41.70 4.24
3796 7533 8.930760 GCAGAGATATATCCAACTACACAATTC 58.069 37.037 9.18 0.00 0.00 2.17
3911 7648 2.495270 CTCTGCTTCTCTGCAAGTAGGA 59.505 50.000 2.01 0.59 42.83 2.94
3922 7659 1.120530 CAAGTAGGAGCCGTGGGTAT 58.879 55.000 0.00 0.00 0.00 2.73
4048 7785 4.518211 ACAGAGCTTTCAAGTGGAGAAATG 59.482 41.667 0.00 0.00 34.75 2.32
4091 7841 1.064060 GCACTGCCAGTATTAAAGCCG 59.936 52.381 0.00 0.00 0.00 5.52
4116 7868 3.513680 TTGAATGATGATGCTTGTGGC 57.486 42.857 0.00 0.00 42.22 5.01
4168 7920 4.713854 TTTTAGTTTTCTGTACCGTCGC 57.286 40.909 0.00 0.00 0.00 5.19
4181 7933 1.425428 CGTCGCCATTTCAAGCTCC 59.575 57.895 0.00 0.00 0.00 4.70
4209 8001 9.787532 TTGCTTATTTGCTTATACATGAAGTTC 57.212 29.630 0.00 0.00 0.00 3.01
4221 8013 4.655963 ACATGAAGTTCTGCTGGTGTTAT 58.344 39.130 0.00 0.00 0.00 1.89
4231 8023 5.129634 TCTGCTGGTGTTATTGTTCTTCAA 58.870 37.500 0.00 0.00 40.53 2.69
4295 8090 3.520721 TGTGATCTGCCAGATATATGGGG 59.479 47.826 17.90 0.00 40.97 4.96
4297 8092 3.520721 TGATCTGCCAGATATATGGGGTG 59.479 47.826 17.90 0.00 40.97 4.61
4309 8104 1.691196 ATGGGGTGCAATATCCAACG 58.309 50.000 0.00 0.00 32.56 4.10
4313 8108 1.427419 GTGCAATATCCAACGCGCA 59.573 52.632 5.73 0.00 35.03 6.09
4330 8125 3.388308 GCGCATCAGATCTGTTATGACT 58.612 45.455 22.35 1.38 0.00 3.41
4432 8239 7.119387 AGGCAAGTTATCTTAGGCAAGTTATT 58.881 34.615 10.13 0.00 33.44 1.40
4529 8339 2.706190 ACTATTTCTATTGCCCGGCTCT 59.294 45.455 11.61 0.00 0.00 4.09
4705 8522 1.134491 GCCGCTAACACCTTGGTATCT 60.134 52.381 0.00 0.00 0.00 1.98
4910 8775 1.941999 GCAACTTCCCATCCAGCAGC 61.942 60.000 0.00 0.00 0.00 5.25
4911 8776 1.000396 AACTTCCCATCCAGCAGCC 60.000 57.895 0.00 0.00 0.00 4.85
4912 8777 1.792757 AACTTCCCATCCAGCAGCCA 61.793 55.000 0.00 0.00 0.00 4.75
4913 8778 1.229359 CTTCCCATCCAGCAGCCAT 59.771 57.895 0.00 0.00 0.00 4.40
4914 8779 0.822532 CTTCCCATCCAGCAGCCATC 60.823 60.000 0.00 0.00 0.00 3.51
4915 8780 2.593725 CCCATCCAGCAGCCATCG 60.594 66.667 0.00 0.00 0.00 3.84
4916 8781 3.285215 CCATCCAGCAGCCATCGC 61.285 66.667 0.00 0.00 0.00 4.58
4917 8782 3.285215 CATCCAGCAGCCATCGCC 61.285 66.667 0.00 0.00 34.57 5.54
4918 8783 4.923942 ATCCAGCAGCCATCGCCG 62.924 66.667 0.00 0.00 34.57 6.46
4929 8794 4.181010 ATCGCCGCAGCTTCCCAT 62.181 61.111 0.00 0.00 36.60 4.00
4930 8795 4.838152 TCGCCGCAGCTTCCCATC 62.838 66.667 0.00 0.00 36.60 3.51
4932 8797 4.802051 GCCGCAGCTTCCCATCCA 62.802 66.667 0.00 0.00 35.50 3.41
4933 8798 2.515523 CCGCAGCTTCCCATCCAG 60.516 66.667 0.00 0.00 0.00 3.86
4934 8799 3.207669 CGCAGCTTCCCATCCAGC 61.208 66.667 0.00 0.00 36.16 4.85
4935 8800 2.044650 GCAGCTTCCCATCCAGCA 60.045 61.111 0.00 0.00 38.61 4.41
4936 8801 2.119655 GCAGCTTCCCATCCAGCAG 61.120 63.158 0.00 0.00 38.61 4.24
4990 8882 0.983467 TCACACCAGAAGCTATGGCA 59.017 50.000 16.02 0.00 41.87 4.92
5046 9149 1.207089 CATCCGTCTCTACTTGGCCAA 59.793 52.381 19.25 19.25 0.00 4.52
5145 9248 4.753662 TCTCACCGGCGGCTACCT 62.754 66.667 28.71 2.03 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.659089 ATGTGTACACCCGAGCCGC 62.659 63.158 22.91 0.00 0.00 6.53
1 2 1.518572 GATGTGTACACCCGAGCCG 60.519 63.158 22.91 0.00 0.00 5.52
6 7 0.744874 ATCTCGGATGTGTACACCCG 59.255 55.000 27.86 27.86 43.02 5.28
7 8 2.936498 CAAATCTCGGATGTGTACACCC 59.064 50.000 22.91 16.15 0.00 4.61
8 9 2.351726 GCAAATCTCGGATGTGTACACC 59.648 50.000 22.91 8.55 0.00 4.16
9 10 3.000041 TGCAAATCTCGGATGTGTACAC 59.000 45.455 19.36 19.36 0.00 2.90
10 11 3.326836 TGCAAATCTCGGATGTGTACA 57.673 42.857 0.00 0.00 0.00 2.90
11 12 3.060272 CGATGCAAATCTCGGATGTGTAC 60.060 47.826 0.00 0.00 0.00 2.90
12 13 3.123050 CGATGCAAATCTCGGATGTGTA 58.877 45.455 0.00 2.74 0.00 2.90
14 15 1.935873 ACGATGCAAATCTCGGATGTG 59.064 47.619 11.73 0.99 39.16 3.21
15 16 2.315925 ACGATGCAAATCTCGGATGT 57.684 45.000 11.73 0.00 39.16 3.06
16 17 4.997905 AATACGATGCAAATCTCGGATG 57.002 40.909 5.94 0.00 37.45 3.51
17 18 4.319766 GCAAATACGATGCAAATCTCGGAT 60.320 41.667 11.73 5.90 43.29 4.18
18 19 3.002246 GCAAATACGATGCAAATCTCGGA 59.998 43.478 11.73 3.59 43.29 4.55
28 29 0.315059 CGGACGTGCAAATACGATGC 60.315 55.000 8.11 0.00 46.46 3.91
29 30 1.255342 CTCGGACGTGCAAATACGATG 59.745 52.381 8.11 0.00 46.46 3.84
30 31 1.556564 CTCGGACGTGCAAATACGAT 58.443 50.000 8.11 0.00 46.46 3.73
31 32 1.074319 GCTCGGACGTGCAAATACGA 61.074 55.000 8.11 5.71 46.46 3.43
33 34 1.017177 TGGCTCGGACGTGCAAATAC 61.017 55.000 18.51 3.67 36.47 1.89
34 35 0.320858 TTGGCTCGGACGTGCAAATA 60.321 50.000 18.51 1.73 36.47 1.40
37 38 2.664851 CTTGGCTCGGACGTGCAA 60.665 61.111 18.51 6.43 36.47 4.08
39 40 2.665185 AACTTGGCTCGGACGTGC 60.665 61.111 9.96 9.96 0.00 5.34
42 43 0.788391 GTAACAACTTGGCTCGGACG 59.212 55.000 0.00 0.00 0.00 4.79
43 44 1.529865 GTGTAACAACTTGGCTCGGAC 59.470 52.381 0.00 0.00 36.32 4.79
45 46 0.872388 GGTGTAACAACTTGGCTCGG 59.128 55.000 0.00 0.00 39.98 4.63
47 48 0.872388 CCGGTGTAACAACTTGGCTC 59.128 55.000 0.00 0.00 39.98 4.70
48 49 0.181824 ACCGGTGTAACAACTTGGCT 59.818 50.000 6.12 0.00 39.98 4.75
50 51 2.290464 TGAACCGGTGTAACAACTTGG 58.710 47.619 8.52 0.00 39.98 3.61
51 52 4.201970 ACATTGAACCGGTGTAACAACTTG 60.202 41.667 8.52 11.09 39.98 3.16
53 54 3.547746 ACATTGAACCGGTGTAACAACT 58.452 40.909 8.52 0.00 39.98 3.16
54 55 3.974871 ACATTGAACCGGTGTAACAAC 57.025 42.857 8.52 0.00 39.98 3.32
56 57 3.695060 ACAAACATTGAACCGGTGTAACA 59.305 39.130 8.52 3.66 39.98 2.41
57 58 4.284485 GACAAACATTGAACCGGTGTAAC 58.716 43.478 8.52 0.58 0.00 2.50
58 59 3.002451 CGACAAACATTGAACCGGTGTAA 59.998 43.478 8.52 7.11 0.00 2.41
59 60 2.544686 CGACAAACATTGAACCGGTGTA 59.455 45.455 8.52 0.00 0.00 2.90
60 61 1.332375 CGACAAACATTGAACCGGTGT 59.668 47.619 8.52 0.00 0.00 4.16
61 62 1.924191 GCGACAAACATTGAACCGGTG 60.924 52.381 8.52 0.00 0.00 4.94
62 63 0.309612 GCGACAAACATTGAACCGGT 59.690 50.000 0.00 0.00 0.00 5.28
63 64 0.309302 TGCGACAAACATTGAACCGG 59.691 50.000 0.00 0.00 0.00 5.28
64 65 2.043411 CTTGCGACAAACATTGAACCG 58.957 47.619 0.00 0.00 0.00 4.44
66 67 4.351192 AGAACTTGCGACAAACATTGAAC 58.649 39.130 0.00 0.00 0.00 3.18
67 68 4.630894 AGAACTTGCGACAAACATTGAA 57.369 36.364 0.00 0.00 0.00 2.69
68 69 4.319477 GCTAGAACTTGCGACAAACATTGA 60.319 41.667 0.00 0.00 0.00 2.57
69 70 3.908382 GCTAGAACTTGCGACAAACATTG 59.092 43.478 0.00 0.00 0.00 2.82
70 71 3.563808 TGCTAGAACTTGCGACAAACATT 59.436 39.130 0.00 0.00 34.11 2.71
71 72 3.058914 GTGCTAGAACTTGCGACAAACAT 60.059 43.478 0.00 0.00 34.11 2.71
72 73 2.286833 GTGCTAGAACTTGCGACAAACA 59.713 45.455 0.00 0.00 34.11 2.83
73 74 2.544267 AGTGCTAGAACTTGCGACAAAC 59.456 45.455 0.00 0.00 34.11 2.93
74 75 2.833794 AGTGCTAGAACTTGCGACAAA 58.166 42.857 0.00 0.00 34.11 2.83
75 76 2.526304 AGTGCTAGAACTTGCGACAA 57.474 45.000 0.00 0.00 34.11 3.18
76 77 3.653539 TTAGTGCTAGAACTTGCGACA 57.346 42.857 9.19 0.00 34.11 4.35
77 78 3.988517 ACTTTAGTGCTAGAACTTGCGAC 59.011 43.478 9.19 4.14 34.11 5.19
79 80 3.987868 TCACTTTAGTGCTAGAACTTGCG 59.012 43.478 9.19 0.15 45.25 4.85
80 81 4.991687 AGTCACTTTAGTGCTAGAACTTGC 59.008 41.667 9.19 0.00 45.25 4.01
81 82 5.986135 ACAGTCACTTTAGTGCTAGAACTTG 59.014 40.000 9.19 0.91 45.25 3.16
83 84 5.793030 ACAGTCACTTTAGTGCTAGAACT 57.207 39.130 8.84 8.84 45.25 3.01
84 85 6.650372 CAAACAGTCACTTTAGTGCTAGAAC 58.350 40.000 5.00 0.00 45.25 3.01
85 86 5.236478 GCAAACAGTCACTTTAGTGCTAGAA 59.764 40.000 5.00 0.00 45.25 2.10
86 87 4.750098 GCAAACAGTCACTTTAGTGCTAGA 59.250 41.667 5.00 0.00 45.25 2.43
88 89 3.493129 CGCAAACAGTCACTTTAGTGCTA 59.507 43.478 5.00 0.00 45.25 3.49
89 90 2.287915 CGCAAACAGTCACTTTAGTGCT 59.712 45.455 5.00 3.51 45.25 4.40
94 95 3.936453 ACTTGACGCAAACAGTCACTTTA 59.064 39.130 0.00 0.00 46.81 1.85
96 97 2.356135 ACTTGACGCAAACAGTCACTT 58.644 42.857 0.00 0.00 46.81 3.16
98 99 2.825086 AACTTGACGCAAACAGTCAC 57.175 45.000 0.00 0.00 46.81 3.67
99 100 4.729458 GCTTAAACTTGACGCAAACAGTCA 60.729 41.667 0.00 0.00 45.68 3.41
100 101 3.724257 GCTTAAACTTGACGCAAACAGTC 59.276 43.478 0.00 0.00 38.98 3.51
101 102 3.127895 TGCTTAAACTTGACGCAAACAGT 59.872 39.130 0.00 0.00 0.00 3.55
102 103 3.482110 GTGCTTAAACTTGACGCAAACAG 59.518 43.478 0.00 0.00 31.77 3.16
104 105 3.691498 AGTGCTTAAACTTGACGCAAAC 58.309 40.909 0.00 0.00 31.77 2.93
108 109 2.159881 CGGTAGTGCTTAAACTTGACGC 60.160 50.000 0.00 0.00 0.00 5.19
109 110 2.159881 GCGGTAGTGCTTAAACTTGACG 60.160 50.000 0.00 0.00 0.00 4.35
110 111 3.064931 AGCGGTAGTGCTTAAACTTGAC 58.935 45.455 0.00 0.00 44.46 3.18
112 113 2.806244 ACAGCGGTAGTGCTTAAACTTG 59.194 45.455 0.00 0.00 44.46 3.16
114 115 2.833631 ACAGCGGTAGTGCTTAAACT 57.166 45.000 0.00 0.00 44.46 2.66
115 116 5.121142 TCAATTACAGCGGTAGTGCTTAAAC 59.879 40.000 0.00 0.00 44.46 2.01
116 117 5.121142 GTCAATTACAGCGGTAGTGCTTAAA 59.879 40.000 0.00 0.00 44.46 1.52
117 118 4.628333 GTCAATTACAGCGGTAGTGCTTAA 59.372 41.667 0.00 0.00 44.46 1.85
121 122 2.348666 CAGTCAATTACAGCGGTAGTGC 59.651 50.000 0.00 0.00 0.00 4.40
122 123 3.367932 CACAGTCAATTACAGCGGTAGTG 59.632 47.826 0.00 0.61 0.00 2.74
123 124 3.006537 ACACAGTCAATTACAGCGGTAGT 59.993 43.478 0.00 0.00 0.00 2.73
124 125 3.585862 ACACAGTCAATTACAGCGGTAG 58.414 45.455 0.00 0.00 0.00 3.18
125 126 3.671008 ACACAGTCAATTACAGCGGTA 57.329 42.857 0.00 0.00 0.00 4.02
127 128 3.896648 AAACACAGTCAATTACAGCGG 57.103 42.857 0.00 0.00 0.00 5.52
179 180 3.702045 TCACTTGGAACGGGATTGTTTTT 59.298 39.130 0.00 0.00 30.75 1.94
180 181 3.292460 TCACTTGGAACGGGATTGTTTT 58.708 40.909 0.00 0.00 30.75 2.43
181 182 2.884639 CTCACTTGGAACGGGATTGTTT 59.115 45.455 0.00 0.00 30.75 2.83
213 214 3.680786 TGACGGTGAGCTCGGGTG 61.681 66.667 9.64 1.28 0.00 4.61
215 216 4.436998 GGTGACGGTGAGCTCGGG 62.437 72.222 9.64 3.00 0.00 5.14
216 217 3.343788 GAGGTGACGGTGAGCTCGG 62.344 68.421 10.85 3.38 0.00 4.63
217 218 2.142357 TTGAGGTGACGGTGAGCTCG 62.142 60.000 19.15 0.00 40.21 5.03
247 255 7.703621 CCGGTAACTCGTCTGATTCTATTTTTA 59.296 37.037 0.00 0.00 0.00 1.52
252 260 3.004524 GCCGGTAACTCGTCTGATTCTAT 59.995 47.826 1.90 0.00 0.00 1.98
255 263 1.557651 GCCGGTAACTCGTCTGATTC 58.442 55.000 1.90 0.00 0.00 2.52
305 313 3.735029 ACCGCCGACGAGTCTGTC 61.735 66.667 0.00 5.40 43.93 3.51
328 336 3.680786 CTCGTCTCCACGCCACCA 61.681 66.667 0.00 0.00 46.28 4.17
478 504 2.797156 GTTGATGAAGTGATCCGATCCG 59.203 50.000 5.91 0.00 0.00 4.18
479 505 3.134458 GGTTGATGAAGTGATCCGATCC 58.866 50.000 5.91 0.00 0.00 3.36
481 507 3.491619 CGAGGTTGATGAAGTGATCCGAT 60.492 47.826 0.00 0.00 0.00 4.18
482 508 2.159240 CGAGGTTGATGAAGTGATCCGA 60.159 50.000 0.00 0.00 0.00 4.55
533 559 2.510238 CGCTCTTCCCAGCTTCCG 60.510 66.667 0.00 0.00 37.25 4.30
593 1345 3.204382 AGTGGGACGGAATGGGAATAAAT 59.796 43.478 0.00 0.00 0.00 1.40
648 1400 4.125703 CTGGCTAACTCATCCAGCTAAAG 58.874 47.826 0.00 0.00 40.63 1.85
650 1402 3.827008 CTGGCTAACTCATCCAGCTAA 57.173 47.619 0.00 0.00 40.63 3.09
662 1414 3.311048 GCAGTTCTCATTAGCTGGCTAAC 59.689 47.826 15.91 6.41 40.76 2.34
695 1447 6.427853 TCTGTTGAGTGTTGGTGATATGAAAG 59.572 38.462 0.00 0.00 0.00 2.62
697 1449 5.863965 TCTGTTGAGTGTTGGTGATATGAA 58.136 37.500 0.00 0.00 0.00 2.57
698 1450 5.482006 CTCTGTTGAGTGTTGGTGATATGA 58.518 41.667 0.00 0.00 35.67 2.15
699 1451 5.791367 CTCTGTTGAGTGTTGGTGATATG 57.209 43.478 0.00 0.00 35.67 1.78
754 1549 3.754850 ACGTACTACAGTATGCACTCACA 59.245 43.478 8.25 0.00 42.53 3.58
771 1566 0.380024 GCTCTTCCCGTCCTACGTAC 59.620 60.000 0.00 0.00 40.58 3.67
772 1567 0.254178 AGCTCTTCCCGTCCTACGTA 59.746 55.000 0.00 0.00 40.58 3.57
773 1568 0.254178 TAGCTCTTCCCGTCCTACGT 59.746 55.000 0.00 0.00 40.58 3.57
774 1569 1.386533 TTAGCTCTTCCCGTCCTACG 58.613 55.000 0.00 0.00 42.11 3.51
871 1677 0.666913 GCCATTGCAGCTCCATAGTG 59.333 55.000 0.00 0.00 37.47 2.74
872 1678 0.816825 CGCCATTGCAGCTCCATAGT 60.817 55.000 0.00 0.00 37.32 2.12
873 1679 0.533531 TCGCCATTGCAGCTCCATAG 60.534 55.000 0.00 0.00 37.32 2.23
875 1681 2.117156 GTCGCCATTGCAGCTCCAT 61.117 57.895 0.00 0.00 37.32 3.41
876 1682 2.747460 GTCGCCATTGCAGCTCCA 60.747 61.111 0.00 0.00 37.32 3.86
913 1719 9.741198 ATCCCTGAATCATATAGGTAGATGAAT 57.259 33.333 0.00 0.00 37.45 2.57
914 1720 8.985922 CATCCCTGAATCATATAGGTAGATGAA 58.014 37.037 0.00 0.00 37.45 2.57
916 1722 7.688820 GCCATCCCTGAATCATATAGGTAGATG 60.689 44.444 0.00 0.00 33.60 2.90
919 1725 5.452496 CGCCATCCCTGAATCATATAGGTAG 60.452 48.000 0.00 0.00 0.00 3.18
920 1726 4.405680 CGCCATCCCTGAATCATATAGGTA 59.594 45.833 0.00 0.00 0.00 3.08
921 1727 3.198635 CGCCATCCCTGAATCATATAGGT 59.801 47.826 0.00 0.00 0.00 3.08
922 1728 3.452264 TCGCCATCCCTGAATCATATAGG 59.548 47.826 0.00 0.00 0.00 2.57
923 1729 4.743057 TCGCCATCCCTGAATCATATAG 57.257 45.455 0.00 0.00 0.00 1.31
924 1730 5.497464 TTTCGCCATCCCTGAATCATATA 57.503 39.130 0.00 0.00 0.00 0.86
925 1731 4.371624 TTTCGCCATCCCTGAATCATAT 57.628 40.909 0.00 0.00 0.00 1.78
952 1758 8.834465 CCTCTGAAGTCAATAATAACTCCATTG 58.166 37.037 0.00 0.00 0.00 2.82
992 1806 2.872038 GCCCGCTTACATCCCTATCAAG 60.872 54.545 0.00 0.00 0.00 3.02
993 1807 1.071699 GCCCGCTTACATCCCTATCAA 59.928 52.381 0.00 0.00 0.00 2.57
995 1809 0.389948 CGCCCGCTTACATCCCTATC 60.390 60.000 0.00 0.00 0.00 2.08
996 1810 1.119574 ACGCCCGCTTACATCCCTAT 61.120 55.000 0.00 0.00 0.00 2.57
997 1811 1.741327 GACGCCCGCTTACATCCCTA 61.741 60.000 0.00 0.00 0.00 3.53
998 1812 3.081409 ACGCCCGCTTACATCCCT 61.081 61.111 0.00 0.00 0.00 4.20
1055 1872 6.202937 TGCACCAATTGTCGTTACTTTAAAG 58.797 36.000 13.76 13.76 0.00 1.85
1087 1904 1.285950 CGTGTCTGTCCGAGAAGCA 59.714 57.895 0.00 0.00 30.26 3.91
1089 1906 3.386379 GACGTGTCTGTCCGAGAAG 57.614 57.895 0.00 0.00 32.61 2.85
1171 2024 0.325860 ACGCCCCTACCATTACTCCA 60.326 55.000 0.00 0.00 0.00 3.86
1173 2026 0.828677 ACACGCCCCTACCATTACTC 59.171 55.000 0.00 0.00 0.00 2.59
1175 2028 1.093496 GCACACGCCCCTACCATTAC 61.093 60.000 0.00 0.00 0.00 1.89
1176 2029 1.222387 GCACACGCCCCTACCATTA 59.778 57.895 0.00 0.00 0.00 1.90
1177 2030 2.045340 GCACACGCCCCTACCATT 60.045 61.111 0.00 0.00 0.00 3.16
1178 2031 4.467084 CGCACACGCCCCTACCAT 62.467 66.667 0.00 0.00 33.11 3.55
1233 2086 5.464588 TTGGATGGTCTGGATGGATTAAA 57.535 39.130 0.00 0.00 0.00 1.52
1447 2301 2.256158 CACCATTGCACAGCACCG 59.744 61.111 0.00 0.00 38.71 4.94
1507 2361 0.035915 GGAAGAGGAGCCACTGAACC 60.036 60.000 0.00 0.00 0.00 3.62
1573 2427 5.488341 CCTAGGTACGCAAGCCATATTATT 58.512 41.667 0.00 0.00 45.62 1.40
1765 2628 1.521681 GTGCCGTGTCCATAGCTCC 60.522 63.158 0.00 0.00 0.00 4.70
1979 2869 4.380973 CGAGTTGATCCTGCTTTCTCTGTA 60.381 45.833 0.00 0.00 0.00 2.74
2081 3133 4.021981 CACATGAGTGTCAGTCTGAAGGTA 60.022 45.833 3.51 0.00 40.92 3.08
2140 3240 0.877649 CAGGTTGATGATCGGCCTCG 60.878 60.000 0.00 0.00 37.82 4.63
2392 3534 2.859165 ATGCTTGTTTTCCCTCGAGA 57.141 45.000 15.71 0.00 0.00 4.04
2745 3893 6.146216 CCAGTTGTTTTTGCGTGTTCATATA 58.854 36.000 0.00 0.00 0.00 0.86
2746 3894 4.981674 CCAGTTGTTTTTGCGTGTTCATAT 59.018 37.500 0.00 0.00 0.00 1.78
2747 3895 4.355437 CCAGTTGTTTTTGCGTGTTCATA 58.645 39.130 0.00 0.00 0.00 2.15
2748 3896 3.186119 CCAGTTGTTTTTGCGTGTTCAT 58.814 40.909 0.00 0.00 0.00 2.57
2749 3897 2.600731 CCAGTTGTTTTTGCGTGTTCA 58.399 42.857 0.00 0.00 0.00 3.18
2750 3898 1.323235 GCCAGTTGTTTTTGCGTGTTC 59.677 47.619 0.00 0.00 0.00 3.18
2751 3899 1.355005 GCCAGTTGTTTTTGCGTGTT 58.645 45.000 0.00 0.00 0.00 3.32
2752 3900 0.459411 GGCCAGTTGTTTTTGCGTGT 60.459 50.000 0.00 0.00 0.00 4.49
2753 3901 0.179113 AGGCCAGTTGTTTTTGCGTG 60.179 50.000 5.01 0.00 0.00 5.34
2754 3902 0.534873 AAGGCCAGTTGTTTTTGCGT 59.465 45.000 5.01 0.00 0.00 5.24
2755 3903 2.500509 TAAGGCCAGTTGTTTTTGCG 57.499 45.000 5.01 0.00 0.00 4.85
2757 3905 4.702831 ACCAATAAGGCCAGTTGTTTTTG 58.297 39.130 5.01 1.65 43.14 2.44
2761 3909 4.042934 AGACTACCAATAAGGCCAGTTGTT 59.957 41.667 5.01 0.00 43.14 2.83
2762 3910 3.587506 AGACTACCAATAAGGCCAGTTGT 59.412 43.478 5.01 0.00 43.14 3.32
2763 3911 4.222124 AGACTACCAATAAGGCCAGTTG 57.778 45.455 5.01 6.66 43.14 3.16
2766 3914 6.324254 ACTTAGTAGACTACCAATAAGGCCAG 59.676 42.308 17.71 0.00 43.14 4.85
2767 3915 6.097839 CACTTAGTAGACTACCAATAAGGCCA 59.902 42.308 17.71 0.00 43.14 5.36
2769 3917 5.984323 GCACTTAGTAGACTACCAATAAGGC 59.016 44.000 17.71 14.90 43.14 4.35
2770 3918 6.462628 GGGCACTTAGTAGACTACCAATAAGG 60.463 46.154 17.71 11.22 45.67 2.69
2771 3919 6.324254 AGGGCACTTAGTAGACTACCAATAAG 59.676 42.308 9.06 12.26 0.00 1.73
2782 3930 5.516044 TCATTACTCAGGGCACTTAGTAGA 58.484 41.667 9.86 3.11 35.48 2.59
2794 3942 6.702329 AGTTTTCAGTACCTCATTACTCAGG 58.298 40.000 0.00 0.00 35.69 3.86
2796 3944 7.178628 AGCTAGTTTTCAGTACCTCATTACTCA 59.821 37.037 0.00 0.00 29.30 3.41
3245 4393 3.057946 GGAGATCTTTCACACCAAACAGC 60.058 47.826 0.00 0.00 0.00 4.40
3450 6986 1.341383 GGATGTCCTTGAGCCATGGTT 60.341 52.381 14.67 7.37 31.64 3.67
3525 7061 0.030101 GCTCCTCGAGATGTCCTTCG 59.970 60.000 15.71 0.00 0.00 3.79
3529 7065 3.829048 TCGCTCCTCGAGATGTCC 58.171 61.111 15.71 0.00 43.16 4.02
3537 7073 2.285827 AACTGAATCTTCGCTCCTCG 57.714 50.000 0.00 0.00 40.15 4.63
3538 7074 4.111375 TGTAACTGAATCTTCGCTCCTC 57.889 45.455 0.00 0.00 0.00 3.71
3541 7077 4.433615 TCCATGTAACTGAATCTTCGCTC 58.566 43.478 0.00 0.00 0.00 5.03
3554 7090 4.010349 CCCTTGAGAACCTTCCATGTAAC 58.990 47.826 0.00 0.00 0.00 2.50
3557 7093 1.272147 GCCCTTGAGAACCTTCCATGT 60.272 52.381 0.00 0.00 0.00 3.21
3616 7152 2.494530 GCCGTTGCCAACCTTCCAA 61.495 57.895 1.21 0.00 0.00 3.53
3626 7162 2.568090 CTTGGACATGCCGTTGCC 59.432 61.111 0.00 0.00 40.66 4.52
3628 7164 0.321564 TCTCCTTGGACATGCCGTTG 60.322 55.000 0.00 0.00 40.66 4.10
3643 7179 0.541863 TTTCGGCCTTGAGGATCTCC 59.458 55.000 0.00 0.00 37.39 3.71
3650 7186 1.098050 CATTCCCTTTCGGCCTTGAG 58.902 55.000 0.00 0.00 0.00 3.02
3658 7194 2.113860 TCTCAAGCCATTCCCTTTCG 57.886 50.000 0.00 0.00 0.00 3.46
3663 7199 2.158900 TCGATCTTCTCAAGCCATTCCC 60.159 50.000 0.00 0.00 0.00 3.97
3716 7252 2.551644 TGCATTCTGTGAGCTGCAG 58.448 52.632 10.11 10.11 39.54 4.41
3723 7259 2.810274 GCAACTTCTCTGCATTCTGTGA 59.190 45.455 0.00 0.00 39.69 3.58
3796 7533 2.293677 GAGCTTCCATGCATCTTGGATG 59.706 50.000 8.32 11.42 44.45 3.51
3802 7539 0.755079 TAGCGAGCTTCCATGCATCT 59.245 50.000 1.86 0.00 34.99 2.90
3911 7648 0.393077 GCATGTAGATACCCACGGCT 59.607 55.000 0.00 0.00 0.00 5.52
4048 7785 1.606350 CCTGTGAAGTCGACGCGTTC 61.606 60.000 15.53 7.14 0.00 3.95
4091 7841 5.119588 CCACAAGCATCATCATTCAAACAAC 59.880 40.000 0.00 0.00 0.00 3.32
4116 7868 5.066375 TGCAAAATAGAAATGGTCTCCATCG 59.934 40.000 1.60 0.00 44.40 3.84
4168 7920 0.883833 AGCAACGGAGCTTGAAATGG 59.116 50.000 0.00 0.00 43.70 3.16
4181 7933 7.910162 ACTTCATGTATAAGCAAATAAGCAACG 59.090 33.333 0.00 0.00 36.85 4.10
4209 8001 5.437289 TTGAAGAACAATAACACCAGCAG 57.563 39.130 0.00 0.00 33.18 4.24
4221 8013 3.896888 ACCTTGGCATCATTGAAGAACAA 59.103 39.130 0.00 0.00 42.95 2.83
4260 8055 8.765517 TCTGGCAGATCACATATTCACATATAT 58.234 33.333 14.43 0.00 0.00 0.86
4261 8056 8.137745 TCTGGCAGATCACATATTCACATATA 57.862 34.615 14.43 0.00 0.00 0.86
4262 8057 7.012661 TCTGGCAGATCACATATTCACATAT 57.987 36.000 14.43 0.00 0.00 1.78
4281 8076 2.584835 TTGCACCCCATATATCTGGC 57.415 50.000 1.52 0.00 34.77 4.85
4295 8090 0.029300 ATGCGCGTTGGATATTGCAC 59.971 50.000 8.43 0.00 34.86 4.57
4297 8092 0.307453 TGATGCGCGTTGGATATTGC 59.693 50.000 8.43 0.00 0.00 3.56
4309 8104 3.183976 CAGTCATAACAGATCTGATGCGC 59.816 47.826 29.27 16.68 0.00 6.09
4313 8108 3.713248 TGGCCAGTCATAACAGATCTGAT 59.287 43.478 29.27 19.91 0.00 2.90
4408 8203 6.944234 ATAACTTGCCTAAGATAACTTGCC 57.056 37.500 0.00 0.00 37.36 4.52
4529 8339 2.291043 GGGTTTCCGGCTCCTCTGA 61.291 63.158 0.00 0.00 0.00 3.27
4636 8453 0.938192 AGTAGGGGAAGGAGGAGGAG 59.062 60.000 0.00 0.00 0.00 3.69
4640 8457 1.288335 GAGACAGTAGGGGAAGGAGGA 59.712 57.143 0.00 0.00 0.00 3.71
4705 8522 2.582493 GGTCGAAACCCGGGTACCA 61.582 63.158 30.62 14.66 44.63 3.25
4791 8629 1.826921 GCGGTAGTGGAGGGATCGA 60.827 63.158 0.00 0.00 0.00 3.59
4815 8653 3.740397 CCGTAGTGCCCGTCGACA 61.740 66.667 17.16 0.00 0.00 4.35
4912 8777 4.181010 ATGGGAAGCTGCGGCGAT 62.181 61.111 12.98 5.04 44.37 4.58
4913 8778 4.838152 GATGGGAAGCTGCGGCGA 62.838 66.667 12.98 0.00 44.37 5.54
4915 8780 4.802051 TGGATGGGAAGCTGCGGC 62.802 66.667 10.33 10.33 39.06 6.53
4916 8781 2.515523 CTGGATGGGAAGCTGCGG 60.516 66.667 0.00 0.00 0.00 5.69
4917 8782 3.207669 GCTGGATGGGAAGCTGCG 61.208 66.667 0.00 0.00 36.47 5.18
4918 8783 2.044650 TGCTGGATGGGAAGCTGC 60.045 61.111 0.00 0.00 40.21 5.25
4919 8784 2.119655 GCTGCTGGATGGGAAGCTG 61.120 63.158 0.00 0.00 40.21 4.24
4920 8785 2.274760 GCTGCTGGATGGGAAGCT 59.725 61.111 0.00 0.00 40.21 3.74
4921 8786 2.832201 GGCTGCTGGATGGGAAGC 60.832 66.667 0.00 0.00 39.96 3.86
4922 8787 0.822532 GATGGCTGCTGGATGGGAAG 60.823 60.000 0.00 0.00 0.00 3.46
4923 8788 1.228228 GATGGCTGCTGGATGGGAA 59.772 57.895 0.00 0.00 0.00 3.97
4924 8789 2.921435 GATGGCTGCTGGATGGGA 59.079 61.111 0.00 0.00 0.00 4.37
4925 8790 2.593725 CGATGGCTGCTGGATGGG 60.594 66.667 0.00 0.00 0.00 4.00
4926 8791 3.285215 GCGATGGCTGCTGGATGG 61.285 66.667 0.00 0.00 35.83 3.51
4927 8792 3.285215 GGCGATGGCTGCTGGATG 61.285 66.667 0.00 0.00 39.81 3.51
4928 8793 4.923942 CGGCGATGGCTGCTGGAT 62.924 66.667 0.00 0.00 39.01 3.41
4990 8882 1.842562 ACTAGGTCATTGAGCATGCCT 59.157 47.619 15.66 8.11 40.50 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.