Multiple sequence alignment - TraesCS5A01G348500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G348500 chr5A 100.000 2437 0 0 1 2437 552079447 552077011 0.000000e+00 4501.0
1 TraesCS5A01G348500 chr5A 88.038 836 57 20 616 1429 551041100 551041914 0.000000e+00 950.0
2 TraesCS5A01G348500 chr5A 87.790 819 67 17 514 1314 550801586 550802389 0.000000e+00 928.0
3 TraesCS5A01G348500 chr5A 85.776 696 66 25 631 1316 556534670 556533998 0.000000e+00 706.0
4 TraesCS5A01G348500 chr5A 87.793 213 26 0 243 455 109290193 109290405 1.450000e-62 250.0
5 TraesCS5A01G348500 chr5A 87.500 128 12 2 2081 2204 551042602 551042729 7.020000e-31 145.0
6 TraesCS5A01G348500 chr5D 89.173 1173 80 24 455 1606 436824642 436823496 0.000000e+00 1419.0
7 TraesCS5A01G348500 chr5D 87.922 770 60 20 694 1455 436578190 436578934 0.000000e+00 876.0
8 TraesCS5A01G348500 chr5D 86.246 698 68 23 631 1316 440375807 440375126 0.000000e+00 732.0
9 TraesCS5A01G348500 chr5D 90.293 443 42 1 1991 2433 436823022 436822581 1.620000e-161 579.0
10 TraesCS5A01G348500 chr5D 85.663 558 66 14 774 1319 405334947 405334392 2.100000e-160 575.0
11 TraesCS5A01G348500 chr5D 84.058 138 17 3 2081 2214 436579750 436579886 7.070000e-26 128.0
12 TraesCS5A01G348500 chr5B 88.370 1178 86 25 455 1606 530974641 530973489 0.000000e+00 1369.0
13 TraesCS5A01G348500 chr5B 86.429 899 90 19 602 1492 530609070 530609944 0.000000e+00 955.0
14 TraesCS5A01G348500 chr5B 87.763 809 78 16 517 1314 530334070 530334868 0.000000e+00 926.0
15 TraesCS5A01G348500 chr5B 86.316 855 83 22 616 1459 530613201 530614032 0.000000e+00 900.0
16 TraesCS5A01G348500 chr5B 84.783 138 16 3 2081 2214 530614856 530614992 1.520000e-27 134.0
17 TraesCS5A01G348500 chr7D 93.598 453 28 1 3 455 177232620 177233071 0.000000e+00 675.0
18 TraesCS5A01G348500 chr2D 91.863 467 33 2 1 463 365767521 365767056 0.000000e+00 647.0
19 TraesCS5A01G348500 chr2D 86.802 197 26 0 259 455 157397966 157397770 1.130000e-53 220.0
20 TraesCS5A01G348500 chr2D 95.122 41 1 1 81 120 157398311 157398271 2.020000e-06 63.9
21 TraesCS5A01G348500 chr7B 91.904 457 36 1 3 459 399362402 399361947 2.640000e-179 638.0
22 TraesCS5A01G348500 chr6A 90.364 467 38 7 1 464 250833742 250834204 7.450000e-170 606.0
23 TraesCS5A01G348500 chr3A 89.912 456 42 4 1 455 218163293 218163745 3.490000e-163 584.0
24 TraesCS5A01G348500 chr2B 89.224 464 43 5 1 459 760747343 760747804 7.560000e-160 573.0
25 TraesCS5A01G348500 chr1D 91.228 285 20 5 170 451 282719241 282718959 1.370000e-102 383.0
26 TraesCS5A01G348500 chr1D 80.769 182 15 8 1 182 282721961 282721800 9.150000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G348500 chr5A 552077011 552079447 2436 True 4501.0 4501 100.000000 1 2437 1 chr5A.!!$R1 2436
1 TraesCS5A01G348500 chr5A 550801586 550802389 803 False 928.0 928 87.790000 514 1314 1 chr5A.!!$F2 800
2 TraesCS5A01G348500 chr5A 556533998 556534670 672 True 706.0 706 85.776000 631 1316 1 chr5A.!!$R2 685
3 TraesCS5A01G348500 chr5A 551041100 551042729 1629 False 547.5 950 87.769000 616 2204 2 chr5A.!!$F3 1588
4 TraesCS5A01G348500 chr5D 436822581 436824642 2061 True 999.0 1419 89.733000 455 2433 2 chr5D.!!$R3 1978
5 TraesCS5A01G348500 chr5D 440375126 440375807 681 True 732.0 732 86.246000 631 1316 1 chr5D.!!$R2 685
6 TraesCS5A01G348500 chr5D 405334392 405334947 555 True 575.0 575 85.663000 774 1319 1 chr5D.!!$R1 545
7 TraesCS5A01G348500 chr5D 436578190 436579886 1696 False 502.0 876 85.990000 694 2214 2 chr5D.!!$F1 1520
8 TraesCS5A01G348500 chr5B 530973489 530974641 1152 True 1369.0 1369 88.370000 455 1606 1 chr5B.!!$R1 1151
9 TraesCS5A01G348500 chr5B 530334070 530334868 798 False 926.0 926 87.763000 517 1314 1 chr5B.!!$F1 797
10 TraesCS5A01G348500 chr5B 530609070 530614992 5922 False 663.0 955 85.842667 602 2214 3 chr5B.!!$F2 1612
11 TraesCS5A01G348500 chr1D 282718959 282721961 3002 True 253.5 383 85.998500 1 451 2 chr1D.!!$R1 450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 454 0.030235 GTTCCTGAACCAAACACGCC 59.97 55.0 0.0 0.0 35.36 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 7085 0.098376 GAGCGGCAAAGCAGATTCAG 59.902 55.0 1.45 0.0 40.15 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.127054 TGCTCTGGCTATACAGATTTTAGTGT 60.127 38.462 0.00 0.00 45.67 3.55
30 31 6.422400 GCTCTGGCTATACAGATTTTAGTGTC 59.578 42.308 0.00 0.00 45.67 3.67
68 69 6.893554 AGAGATGGAGAGGATATTGAGATGAG 59.106 42.308 0.00 0.00 0.00 2.90
74 75 7.098477 GGAGAGGATATTGAGATGAGATTGTG 58.902 42.308 0.00 0.00 0.00 3.33
75 76 7.006865 AGAGGATATTGAGATGAGATTGTGG 57.993 40.000 0.00 0.00 0.00 4.17
76 77 6.558014 AGAGGATATTGAGATGAGATTGTGGT 59.442 38.462 0.00 0.00 0.00 4.16
78 79 6.996879 AGGATATTGAGATGAGATTGTGGTTG 59.003 38.462 0.00 0.00 0.00 3.77
79 80 4.978083 ATTGAGATGAGATTGTGGTTGC 57.022 40.909 0.00 0.00 0.00 4.17
83 84 4.828939 TGAGATGAGATTGTGGTTGCTTTT 59.171 37.500 0.00 0.00 0.00 2.27
84 85 5.302568 TGAGATGAGATTGTGGTTGCTTTTT 59.697 36.000 0.00 0.00 0.00 1.94
85 86 5.535333 AGATGAGATTGTGGTTGCTTTTTG 58.465 37.500 0.00 0.00 0.00 2.44
86 87 4.998671 TGAGATTGTGGTTGCTTTTTGA 57.001 36.364 0.00 0.00 0.00 2.69
87 88 5.534207 TGAGATTGTGGTTGCTTTTTGAT 57.466 34.783 0.00 0.00 0.00 2.57
88 89 5.916318 TGAGATTGTGGTTGCTTTTTGATT 58.084 33.333 0.00 0.00 0.00 2.57
89 90 7.048629 TGAGATTGTGGTTGCTTTTTGATTA 57.951 32.000 0.00 0.00 0.00 1.75
90 91 7.495901 TGAGATTGTGGTTGCTTTTTGATTAA 58.504 30.769 0.00 0.00 0.00 1.40
91 92 7.984050 TGAGATTGTGGTTGCTTTTTGATTAAA 59.016 29.630 0.00 0.00 0.00 1.52
92 93 8.369218 AGATTGTGGTTGCTTTTTGATTAAAG 57.631 30.769 0.00 0.00 38.00 1.85
93 94 7.986889 AGATTGTGGTTGCTTTTTGATTAAAGT 59.013 29.630 0.00 0.00 37.43 2.66
94 95 7.913674 TTGTGGTTGCTTTTTGATTAAAGTT 57.086 28.000 0.00 0.00 37.43 2.66
96 97 7.746929 TGTGGTTGCTTTTTGATTAAAGTTTG 58.253 30.769 0.00 0.00 37.43 2.93
97 98 7.148340 TGTGGTTGCTTTTTGATTAAAGTTTGG 60.148 33.333 0.00 0.00 37.43 3.28
98 99 6.881602 TGGTTGCTTTTTGATTAAAGTTTGGT 59.118 30.769 0.00 0.00 37.43 3.67
99 100 7.148340 TGGTTGCTTTTTGATTAAAGTTTGGTG 60.148 33.333 0.00 0.00 37.43 4.17
100 101 7.148323 GGTTGCTTTTTGATTAAAGTTTGGTGT 60.148 33.333 0.00 0.00 37.43 4.16
101 102 7.913674 TGCTTTTTGATTAAAGTTTGGTGTT 57.086 28.000 0.00 0.00 37.43 3.32
102 103 7.969314 TGCTTTTTGATTAAAGTTTGGTGTTC 58.031 30.769 0.00 0.00 37.43 3.18
103 104 7.821846 TGCTTTTTGATTAAAGTTTGGTGTTCT 59.178 29.630 0.00 0.00 37.43 3.01
104 105 9.308318 GCTTTTTGATTAAAGTTTGGTGTTCTA 57.692 29.630 0.00 0.00 37.43 2.10
107 108 8.810652 TTTGATTAAAGTTTGGTGTTCTATGC 57.189 30.769 0.00 0.00 0.00 3.14
108 109 7.759489 TGATTAAAGTTTGGTGTTCTATGCT 57.241 32.000 0.00 0.00 0.00 3.79
109 110 7.592938 TGATTAAAGTTTGGTGTTCTATGCTG 58.407 34.615 0.00 0.00 0.00 4.41
110 111 6.952773 TTAAAGTTTGGTGTTCTATGCTGT 57.047 33.333 0.00 0.00 0.00 4.40
111 112 5.852282 AAAGTTTGGTGTTCTATGCTGTT 57.148 34.783 0.00 0.00 0.00 3.16
112 113 5.852282 AAGTTTGGTGTTCTATGCTGTTT 57.148 34.783 0.00 0.00 0.00 2.83
113 114 6.952773 AAGTTTGGTGTTCTATGCTGTTTA 57.047 33.333 0.00 0.00 0.00 2.01
114 115 6.952773 AGTTTGGTGTTCTATGCTGTTTAA 57.047 33.333 0.00 0.00 0.00 1.52
123 124 6.148811 TGTTCTATGCTGTTTAAACTAGTGCC 59.851 38.462 18.72 6.04 0.00 5.01
124 125 5.800296 TCTATGCTGTTTAAACTAGTGCCA 58.200 37.500 18.72 8.70 0.00 4.92
174 175 6.769512 TCTCTGAAGTAAAATAGGCACACTT 58.230 36.000 0.00 0.00 32.33 3.16
177 178 8.911918 TCTGAAGTAAAATAGGCACACTTAAA 57.088 30.769 0.00 0.00 29.89 1.52
178 179 9.344772 TCTGAAGTAAAATAGGCACACTTAAAA 57.655 29.630 0.00 0.00 29.89 1.52
182 183 8.757164 AGTAAAATAGGCACACTTAAAATTGC 57.243 30.769 0.00 0.00 0.00 3.56
183 184 8.585018 AGTAAAATAGGCACACTTAAAATTGCT 58.415 29.630 0.00 0.00 35.24 3.91
184 185 7.656707 AAAATAGGCACACTTAAAATTGCTG 57.343 32.000 0.00 0.00 35.24 4.41
185 186 5.982890 ATAGGCACACTTAAAATTGCTGT 57.017 34.783 0.00 0.00 35.24 4.40
186 187 4.670896 AGGCACACTTAAAATTGCTGTT 57.329 36.364 0.00 0.00 35.24 3.16
187 188 4.370917 AGGCACACTTAAAATTGCTGTTG 58.629 39.130 0.00 0.00 35.24 3.33
188 189 4.119136 GGCACACTTAAAATTGCTGTTGT 58.881 39.130 0.00 0.00 35.24 3.32
189 190 4.209080 GGCACACTTAAAATTGCTGTTGTC 59.791 41.667 0.00 0.00 35.24 3.18
190 191 5.043248 GCACACTTAAAATTGCTGTTGTCT 58.957 37.500 0.00 0.00 32.00 3.41
191 192 5.051508 GCACACTTAAAATTGCTGTTGTCTG 60.052 40.000 0.00 0.00 32.00 3.51
192 193 5.043248 ACACTTAAAATTGCTGTTGTCTGC 58.957 37.500 0.00 0.00 38.66 4.26
193 194 5.163519 ACACTTAAAATTGCTGTTGTCTGCT 60.164 36.000 0.00 0.00 38.91 4.24
194 195 6.039270 ACACTTAAAATTGCTGTTGTCTGCTA 59.961 34.615 0.00 0.00 38.91 3.49
195 196 6.360681 CACTTAAAATTGCTGTTGTCTGCTAC 59.639 38.462 0.00 0.00 38.91 3.58
196 197 6.263168 ACTTAAAATTGCTGTTGTCTGCTACT 59.737 34.615 0.00 0.00 38.91 2.57
197 198 5.520376 AAAATTGCTGTTGTCTGCTACTT 57.480 34.783 0.00 0.00 38.91 2.24
198 199 4.756084 AATTGCTGTTGTCTGCTACTTC 57.244 40.909 0.00 0.00 38.91 3.01
199 200 3.475566 TTGCTGTTGTCTGCTACTTCT 57.524 42.857 0.00 0.00 38.91 2.85
200 201 4.600692 TTGCTGTTGTCTGCTACTTCTA 57.399 40.909 0.00 0.00 38.91 2.10
201 202 3.914312 TGCTGTTGTCTGCTACTTCTAC 58.086 45.455 0.00 0.00 38.91 2.59
202 203 3.320826 TGCTGTTGTCTGCTACTTCTACA 59.679 43.478 0.00 0.00 38.91 2.74
203 204 4.021104 TGCTGTTGTCTGCTACTTCTACAT 60.021 41.667 0.00 0.00 38.91 2.29
204 205 4.564769 GCTGTTGTCTGCTACTTCTACATC 59.435 45.833 0.00 0.00 35.98 3.06
205 206 5.623368 GCTGTTGTCTGCTACTTCTACATCT 60.623 44.000 0.00 0.00 35.98 2.90
206 207 6.346477 TGTTGTCTGCTACTTCTACATCTT 57.654 37.500 0.00 0.00 0.00 2.40
207 208 6.759272 TGTTGTCTGCTACTTCTACATCTTT 58.241 36.000 0.00 0.00 0.00 2.52
208 209 6.646653 TGTTGTCTGCTACTTCTACATCTTTG 59.353 38.462 0.00 0.00 0.00 2.77
209 210 6.346477 TGTCTGCTACTTCTACATCTTTGT 57.654 37.500 0.00 0.00 39.98 2.83
210 211 7.462571 TGTCTGCTACTTCTACATCTTTGTA 57.537 36.000 0.00 0.00 37.28 2.41
211 212 7.892609 TGTCTGCTACTTCTACATCTTTGTAA 58.107 34.615 0.00 0.00 37.86 2.41
212 213 8.531982 TGTCTGCTACTTCTACATCTTTGTAAT 58.468 33.333 0.00 0.00 37.86 1.89
219 220 8.888579 ACTTCTACATCTTTGTAATAATCGGG 57.111 34.615 0.00 0.00 37.86 5.14
220 221 7.931948 ACTTCTACATCTTTGTAATAATCGGGG 59.068 37.037 0.00 0.00 37.86 5.73
221 222 6.228258 TCTACATCTTTGTAATAATCGGGGC 58.772 40.000 0.00 0.00 37.86 5.80
222 223 4.787551 ACATCTTTGTAATAATCGGGGCA 58.212 39.130 0.00 0.00 33.16 5.36
223 224 4.821805 ACATCTTTGTAATAATCGGGGCAG 59.178 41.667 0.00 0.00 33.16 4.85
224 225 4.764050 TCTTTGTAATAATCGGGGCAGA 57.236 40.909 0.00 0.00 0.00 4.26
225 226 4.448210 TCTTTGTAATAATCGGGGCAGAC 58.552 43.478 0.00 0.00 0.00 3.51
235 236 1.339610 TCGGGGCAGACATTGTTTTTG 59.660 47.619 0.00 0.00 0.00 2.44
236 237 1.339610 CGGGGCAGACATTGTTTTTGA 59.660 47.619 0.00 0.00 0.00 2.69
237 238 2.223923 CGGGGCAGACATTGTTTTTGAA 60.224 45.455 0.00 0.00 0.00 2.69
238 239 3.739519 CGGGGCAGACATTGTTTTTGAAA 60.740 43.478 0.00 0.00 0.00 2.69
239 240 4.195416 GGGGCAGACATTGTTTTTGAAAA 58.805 39.130 0.00 0.00 0.00 2.29
241 242 4.273235 GGGCAGACATTGTTTTTGAAAAGG 59.727 41.667 0.00 0.00 0.00 3.11
243 244 5.759763 GGCAGACATTGTTTTTGAAAAGGAT 59.240 36.000 0.00 0.00 0.00 3.24
244 245 6.293027 GGCAGACATTGTTTTTGAAAAGGATG 60.293 38.462 0.00 7.80 32.23 3.51
245 246 6.258507 GCAGACATTGTTTTTGAAAAGGATGT 59.741 34.615 12.28 12.28 37.33 3.06
246 247 7.201635 GCAGACATTGTTTTTGAAAAGGATGTT 60.202 33.333 13.12 5.40 36.02 2.71
247 248 8.117988 CAGACATTGTTTTTGAAAAGGATGTTG 58.882 33.333 13.12 10.61 36.02 3.33
248 249 7.823799 AGACATTGTTTTTGAAAAGGATGTTGT 59.176 29.630 13.12 5.46 36.02 3.32
249 250 8.334263 ACATTGTTTTTGAAAAGGATGTTGTT 57.666 26.923 8.70 0.00 34.01 2.83
250 251 8.791675 ACATTGTTTTTGAAAAGGATGTTGTTT 58.208 25.926 8.70 0.00 34.01 2.83
251 252 9.623350 CATTGTTTTTGAAAAGGATGTTGTTTT 57.377 25.926 0.00 0.00 0.00 2.43
252 253 9.838975 ATTGTTTTTGAAAAGGATGTTGTTTTC 57.161 25.926 0.00 0.00 0.00 2.29
254 255 7.663493 TGTTTTTGAAAAGGATGTTGTTTTCCT 59.337 29.630 5.37 0.00 44.35 3.36
277 278 8.934825 TCCTTGAAAATATAAACAAAATGCTGC 58.065 29.630 0.00 0.00 0.00 5.25
278 279 8.938906 CCTTGAAAATATAAACAAAATGCTGCT 58.061 29.630 0.00 0.00 0.00 4.24
279 280 9.749490 CTTGAAAATATAAACAAAATGCTGCTG 57.251 29.630 0.00 0.00 0.00 4.41
280 281 7.741198 TGAAAATATAAACAAAATGCTGCTGC 58.259 30.769 8.89 8.89 40.20 5.25
296 297 5.750650 GCTGCTGCAATTTTGTATTTTTGT 58.249 33.333 11.11 0.00 39.41 2.83
297 298 6.200808 GCTGCTGCAATTTTGTATTTTTGTT 58.799 32.000 11.11 0.00 39.41 2.83
298 299 7.351223 GCTGCTGCAATTTTGTATTTTTGTTA 58.649 30.769 11.11 0.00 39.41 2.41
299 300 8.016801 GCTGCTGCAATTTTGTATTTTTGTTAT 58.983 29.630 11.11 0.00 39.41 1.89
300 301 9.881529 CTGCTGCAATTTTGTATTTTTGTTATT 57.118 25.926 3.02 0.00 0.00 1.40
301 302 9.875675 TGCTGCAATTTTGTATTTTTGTTATTC 57.124 25.926 0.00 0.00 0.00 1.75
302 303 9.328721 GCTGCAATTTTGTATTTTTGTTATTCC 57.671 29.630 0.00 0.00 0.00 3.01
316 317 9.757227 TTTTTGTTATTCCATTCTTCATTTCGT 57.243 25.926 0.00 0.00 0.00 3.85
317 318 8.741101 TTTGTTATTCCATTCTTCATTTCGTG 57.259 30.769 0.00 0.00 0.00 4.35
318 319 6.321717 TGTTATTCCATTCTTCATTTCGTGC 58.678 36.000 0.00 0.00 0.00 5.34
319 320 6.150976 TGTTATTCCATTCTTCATTTCGTGCT 59.849 34.615 0.00 0.00 0.00 4.40
320 321 5.649782 ATTCCATTCTTCATTTCGTGCTT 57.350 34.783 0.00 0.00 0.00 3.91
321 322 4.685169 TCCATTCTTCATTTCGTGCTTC 57.315 40.909 0.00 0.00 0.00 3.86
322 323 3.440173 TCCATTCTTCATTTCGTGCTTCC 59.560 43.478 0.00 0.00 0.00 3.46
323 324 3.419915 CATTCTTCATTTCGTGCTTCCG 58.580 45.455 0.00 0.00 0.00 4.30
324 325 2.448926 TCTTCATTTCGTGCTTCCGA 57.551 45.000 0.00 0.00 34.52 4.55
325 326 2.761559 TCTTCATTTCGTGCTTCCGAA 58.238 42.857 2.99 2.99 44.43 4.30
326 327 2.478894 TCTTCATTTCGTGCTTCCGAAC 59.521 45.455 6.05 0.00 45.64 3.95
327 328 1.153353 TCATTTCGTGCTTCCGAACC 58.847 50.000 6.05 0.00 45.64 3.62
328 329 0.871722 CATTTCGTGCTTCCGAACCA 59.128 50.000 6.05 0.00 45.64 3.67
329 330 1.265635 CATTTCGTGCTTCCGAACCAA 59.734 47.619 6.05 0.00 45.64 3.67
330 331 1.380524 TTTCGTGCTTCCGAACCAAA 58.619 45.000 6.05 0.00 45.64 3.28
331 332 0.658897 TTCGTGCTTCCGAACCAAAC 59.341 50.000 2.99 0.00 41.54 2.93
332 333 0.462225 TCGTGCTTCCGAACCAAACA 60.462 50.000 0.00 0.00 33.15 2.83
333 334 0.316689 CGTGCTTCCGAACCAAACAC 60.317 55.000 0.00 0.00 0.00 3.32
334 335 0.736053 GTGCTTCCGAACCAAACACA 59.264 50.000 0.00 0.00 0.00 3.72
335 336 1.336755 GTGCTTCCGAACCAAACACAT 59.663 47.619 0.00 0.00 0.00 3.21
336 337 1.336440 TGCTTCCGAACCAAACACATG 59.664 47.619 0.00 0.00 0.00 3.21
337 338 1.606668 GCTTCCGAACCAAACACATGA 59.393 47.619 0.00 0.00 0.00 3.07
338 339 2.034053 GCTTCCGAACCAAACACATGAA 59.966 45.455 0.00 0.00 0.00 2.57
339 340 3.628017 CTTCCGAACCAAACACATGAAC 58.372 45.455 0.00 0.00 0.00 3.18
340 341 1.600013 TCCGAACCAAACACATGAACG 59.400 47.619 0.00 0.00 0.00 3.95
341 342 1.334599 CCGAACCAAACACATGAACGG 60.335 52.381 0.00 0.00 0.00 4.44
342 343 1.600013 CGAACCAAACACATGAACGGA 59.400 47.619 0.00 0.00 0.00 4.69
343 344 2.349438 CGAACCAAACACATGAACGGAG 60.349 50.000 0.00 0.00 0.00 4.63
344 345 0.951558 ACCAAACACATGAACGGAGC 59.048 50.000 0.00 0.00 0.00 4.70
345 346 0.240945 CCAAACACATGAACGGAGCC 59.759 55.000 0.00 0.00 0.00 4.70
346 347 0.950836 CAAACACATGAACGGAGCCA 59.049 50.000 0.00 0.00 0.00 4.75
347 348 1.541147 CAAACACATGAACGGAGCCAT 59.459 47.619 0.00 0.00 0.00 4.40
348 349 1.909700 AACACATGAACGGAGCCATT 58.090 45.000 0.00 0.00 0.00 3.16
349 350 1.453155 ACACATGAACGGAGCCATTC 58.547 50.000 0.00 0.00 0.00 2.67
350 351 0.734889 CACATGAACGGAGCCATTCC 59.265 55.000 0.00 0.00 43.04 3.01
354 355 1.750193 TGAACGGAGCCATTCCATTC 58.250 50.000 0.00 0.00 46.07 2.67
356 357 2.503765 TGAACGGAGCCATTCCATTCTA 59.496 45.455 4.01 0.00 46.05 2.10
358 359 3.432326 GAACGGAGCCATTCCATTCTACT 60.432 47.826 0.00 0.00 43.28 2.57
361 362 7.794203 GAACGGAGCCATTCCATTCTACTTTT 61.794 42.308 0.00 0.00 43.28 2.27
362 363 5.921962 GGAGCCATTCCATTCTACTTTTT 57.078 39.130 0.00 0.00 46.01 1.94
370 371 6.476243 TTCCATTCTACTTTTTGCTCGTAC 57.524 37.500 0.00 0.00 0.00 3.67
371 372 4.933400 TCCATTCTACTTTTTGCTCGTACC 59.067 41.667 0.00 0.00 0.00 3.34
375 376 3.983344 TCTACTTTTTGCTCGTACCGAAC 59.017 43.478 0.00 0.00 34.74 3.95
376 377 2.553086 ACTTTTTGCTCGTACCGAACA 58.447 42.857 0.00 0.00 34.74 3.18
379 380 4.387862 ACTTTTTGCTCGTACCGAACATAG 59.612 41.667 0.00 0.00 32.12 2.23
380 381 2.572191 TTGCTCGTACCGAACATAGG 57.428 50.000 0.00 0.00 32.12 2.57
383 384 2.159338 TGCTCGTACCGAACATAGGAAC 60.159 50.000 0.00 0.00 34.74 3.62
384 385 2.713011 CTCGTACCGAACATAGGAACG 58.287 52.381 0.00 0.00 34.74 3.95
388 389 2.375173 ACCGAACATAGGAACGGAAC 57.625 50.000 19.14 0.00 46.94 3.62
389 390 1.066645 ACCGAACATAGGAACGGAACC 60.067 52.381 19.14 0.00 46.94 3.62
390 391 1.274596 CGAACATAGGAACGGAACCG 58.725 55.000 11.83 11.83 46.03 4.44
391 392 1.135315 CGAACATAGGAACGGAACCGA 60.135 52.381 20.14 0.00 42.83 4.69
392 393 2.480759 CGAACATAGGAACGGAACCGAT 60.481 50.000 20.14 8.09 42.83 4.18
393 394 2.884894 ACATAGGAACGGAACCGATC 57.115 50.000 20.14 16.61 42.83 3.69
408 409 5.814783 GAACCGATCCATTTCTCTGAAATG 58.185 41.667 20.03 20.03 37.38 2.32
430 431 4.644103 GAACCATTCCATTCCATGACAG 57.356 45.455 0.00 0.00 0.00 3.51
432 433 4.051661 ACCATTCCATTCCATGACAGTT 57.948 40.909 0.00 0.00 0.00 3.16
433 434 3.765511 ACCATTCCATTCCATGACAGTTG 59.234 43.478 0.00 0.00 0.00 3.16
434 435 3.131577 CCATTCCATTCCATGACAGTTGG 59.868 47.826 0.00 0.00 35.45 3.77
435 436 3.524095 TTCCATTCCATGACAGTTGGT 57.476 42.857 0.00 0.00 35.64 3.67
436 437 3.524095 TCCATTCCATGACAGTTGGTT 57.476 42.857 0.00 0.00 35.64 3.67
437 438 3.420893 TCCATTCCATGACAGTTGGTTC 58.579 45.455 0.00 0.00 35.64 3.62
438 439 2.493278 CCATTCCATGACAGTTGGTTCC 59.507 50.000 0.00 0.00 35.64 3.62
439 440 3.424703 CATTCCATGACAGTTGGTTCCT 58.575 45.455 0.00 0.00 35.64 3.36
442 443 2.441375 TCCATGACAGTTGGTTCCTGAA 59.559 45.455 0.00 0.00 35.64 3.02
443 444 2.554032 CCATGACAGTTGGTTCCTGAAC 59.446 50.000 0.00 1.33 40.45 3.18
452 453 3.544615 GTTCCTGAACCAAACACGC 57.455 52.632 0.00 0.00 35.36 5.34
453 454 0.030235 GTTCCTGAACCAAACACGCC 59.970 55.000 0.00 0.00 35.36 5.68
466 467 3.250220 CACGCCCAAAGTGTTCAAC 57.750 52.632 0.00 0.00 36.98 3.18
476 477 3.928727 AAGTGTTCAACATCCATGCAG 57.071 42.857 0.00 0.00 0.00 4.41
497 498 2.745821 GGTAAACAAACGCCTTCTAGGG 59.254 50.000 0.00 0.00 35.37 3.53
523 524 5.343307 AGAAACACCCCAATATCAATTGC 57.657 39.130 0.00 0.00 41.06 3.56
533 534 5.276270 CCAATATCAATTGCTCGTGGAAAG 58.724 41.667 0.00 0.00 41.06 2.62
551 552 2.789409 AGCAGGGAAATACGCTTTCT 57.211 45.000 9.97 0.00 39.79 2.52
590 591 2.735134 ACATTGAGTTTACGCCTTCGAC 59.265 45.455 0.00 0.00 39.41 4.20
628 644 0.107017 CACCGGCCAGAAATCCATCT 60.107 55.000 0.00 0.00 0.00 2.90
796 823 4.470170 CACGTCACCGATCCGCGA 62.470 66.667 8.23 0.00 44.57 5.87
939 972 3.249189 ACCACCATCAGCCACCGT 61.249 61.111 0.00 0.00 0.00 4.83
950 1001 2.358247 CCACCGTAGCCACCACAC 60.358 66.667 0.00 0.00 0.00 3.82
985 1036 3.497332 TCACCGAGGAGAAGAGAAGAAA 58.503 45.455 0.00 0.00 0.00 2.52
1011 1068 2.893398 GAGAAGATGTCGGGCCGT 59.107 61.111 27.32 6.51 0.00 5.68
1365 6490 0.245813 GTGTAGGGTTCGTGGTCCTC 59.754 60.000 0.00 0.00 32.46 3.71
1367 6492 1.075482 TAGGGTTCGTGGTCCTCGT 59.925 57.895 12.76 0.00 32.46 4.18
1398 6523 1.321743 GTATCTCGCTGTTGTTCGCTG 59.678 52.381 0.00 0.00 0.00 5.18
1400 6525 1.202568 CTCGCTGTTGTTCGCTGTG 59.797 57.895 0.00 0.00 0.00 3.66
1426 6551 5.307976 TCTGTAGGATCGAATGGAATGGAAT 59.692 40.000 0.00 0.00 0.00 3.01
1427 6552 5.940617 TGTAGGATCGAATGGAATGGAATT 58.059 37.500 0.00 0.00 40.93 2.17
1428 6553 5.764686 TGTAGGATCGAATGGAATGGAATTG 59.235 40.000 0.00 0.00 36.07 2.32
1429 6554 5.052693 AGGATCGAATGGAATGGAATTGA 57.947 39.130 0.00 0.00 36.07 2.57
1430 6555 5.448654 AGGATCGAATGGAATGGAATTGAA 58.551 37.500 0.00 0.00 36.07 2.69
1434 6559 8.359642 GGATCGAATGGAATGGAATTGAAATTA 58.640 33.333 0.00 0.00 36.07 1.40
1469 6595 4.149922 CGTTGAAATCTGCTTCGTCTGTTA 59.850 41.667 0.00 0.00 0.00 2.41
1524 6685 2.794350 GCTCAAATCGGTTGTTGGTTTG 59.206 45.455 0.00 0.00 38.47 2.93
1525 6686 2.794350 CTCAAATCGGTTGTTGGTTTGC 59.206 45.455 0.00 0.00 38.47 3.68
1526 6687 2.166459 TCAAATCGGTTGTTGGTTTGCA 59.834 40.909 0.00 0.00 38.47 4.08
1556 6721 5.885449 TGAACCATCCCTTCAATTTGTTT 57.115 34.783 0.00 0.00 0.00 2.83
1557 6722 6.245890 TGAACCATCCCTTCAATTTGTTTT 57.754 33.333 0.00 0.00 0.00 2.43
1559 6724 6.541641 TGAACCATCCCTTCAATTTGTTTTTG 59.458 34.615 0.00 0.00 0.00 2.44
1581 6746 0.478072 TGGACTGTGAAATGCCCACT 59.522 50.000 0.00 0.00 35.66 4.00
1608 6773 3.430236 GCTTAACCCAATTCCAAATCGGG 60.430 47.826 0.00 0.00 43.02 5.14
1609 6774 1.567357 AACCCAATTCCAAATCGGGG 58.433 50.000 0.99 4.68 41.55 5.73
1611 6776 0.325203 CCCAATTCCAAATCGGGGGT 60.325 55.000 0.00 0.00 32.88 4.95
1613 6778 0.823460 CAATTCCAAATCGGGGGTGG 59.177 55.000 0.00 0.00 34.36 4.61
1617 6782 1.136828 TCCAAATCGGGGGTGGATAG 58.863 55.000 0.00 0.00 36.51 2.08
1618 6783 0.110486 CCAAATCGGGGGTGGATAGG 59.890 60.000 0.00 0.00 34.05 2.57
1620 6785 2.051692 CAAATCGGGGGTGGATAGGTA 58.948 52.381 0.00 0.00 0.00 3.08
1625 6790 1.618888 CGGGGGTGGATAGGTATCGAT 60.619 57.143 2.16 2.16 33.52 3.59
1626 6791 1.831736 GGGGGTGGATAGGTATCGATG 59.168 57.143 8.54 0.00 33.52 3.84
1642 6956 7.773224 AGGTATCGATGTTCATTAATGTTCCAA 59.227 33.333 14.97 0.00 0.00 3.53
1688 7010 3.259064 GTTGCCGCTGATAACAGAGTAA 58.741 45.455 3.85 0.00 46.03 2.24
1689 7011 3.603158 TGCCGCTGATAACAGAGTAAA 57.397 42.857 3.85 0.00 46.03 2.01
1725 7077 2.768492 GGAGCCTTGGAATGCGCTG 61.768 63.158 9.73 0.00 0.00 5.18
1727 7079 3.830192 GCCTTGGAATGCGCTGGG 61.830 66.667 9.73 1.30 0.00 4.45
1728 7080 2.045045 CCTTGGAATGCGCTGGGA 60.045 61.111 9.73 0.00 0.00 4.37
1729 7081 1.454479 CCTTGGAATGCGCTGGGAT 60.454 57.895 9.73 0.00 0.00 3.85
1731 7083 1.779025 CTTGGAATGCGCTGGGATCG 61.779 60.000 9.73 0.00 0.00 3.69
1738 7150 2.109799 CGCTGGGATCGCCTGAAT 59.890 61.111 7.38 0.00 0.00 2.57
1755 7167 2.490270 AATCTGCTTTGCCGCTCCCT 62.490 55.000 0.00 0.00 0.00 4.20
1759 7171 2.047274 CTTTGCCGCTCCCTCGAA 60.047 61.111 0.00 0.00 0.00 3.71
1761 7173 3.171828 TTTGCCGCTCCCTCGAACA 62.172 57.895 0.00 0.00 0.00 3.18
1762 7174 3.589654 TTGCCGCTCCCTCGAACAG 62.590 63.158 0.00 0.00 0.00 3.16
1764 7176 2.707849 GCCGCTCCCTCGAACAGTA 61.708 63.158 0.00 0.00 0.00 2.74
1781 7194 4.362677 ACAGTATCTTGGTACCCATCTGT 58.637 43.478 10.07 11.91 31.53 3.41
1783 7196 5.104900 ACAGTATCTTGGTACCCATCTGTTC 60.105 44.000 10.07 0.00 31.53 3.18
1800 7219 2.224281 TGTTCTACCTGCCTCTGTTGTG 60.224 50.000 0.00 0.00 0.00 3.33
1808 7227 1.133513 TGCCTCTGTTGTGTTCCCAAT 60.134 47.619 0.00 0.00 0.00 3.16
1811 7230 3.572255 GCCTCTGTTGTGTTCCCAATTTA 59.428 43.478 0.00 0.00 0.00 1.40
1823 7242 7.614974 TGTGTTCCCAATTTATCTCATGATCAA 59.385 33.333 0.00 0.00 34.32 2.57
1837 7259 3.007473 TGATCAATGCTGCTTCCATGA 57.993 42.857 0.00 0.00 0.00 3.07
1845 7267 2.224744 TGCTGCTTCCATGACTTAACCA 60.225 45.455 0.00 0.00 0.00 3.67
1849 7271 3.758023 TGCTTCCATGACTTAACCACATG 59.242 43.478 0.00 0.00 40.39 3.21
1860 7282 6.939730 TGACTTAACCACATGAAAATCTGCTA 59.060 34.615 0.00 0.00 0.00 3.49
1865 7287 6.690194 ACCACATGAAAATCTGCTATTCTC 57.310 37.500 0.00 0.00 0.00 2.87
1868 7290 7.139392 CCACATGAAAATCTGCTATTCTCATG 58.861 38.462 18.95 18.95 42.69 3.07
1869 7291 6.637254 CACATGAAAATCTGCTATTCTCATGC 59.363 38.462 19.82 0.00 41.40 4.06
1891 7314 8.642020 CATGCATTAGAAGTTTCTTTTAACTGC 58.358 33.333 0.00 13.31 38.33 4.40
1910 7386 7.934855 AACTGCAATTAGAAATCATGAGACT 57.065 32.000 0.09 3.10 0.00 3.24
1911 7387 7.551035 ACTGCAATTAGAAATCATGAGACTC 57.449 36.000 0.09 0.00 0.00 3.36
1912 7388 7.108194 ACTGCAATTAGAAATCATGAGACTCA 58.892 34.615 7.80 7.80 0.00 3.41
1914 7390 8.515695 TGCAATTAGAAATCATGAGACTCAAT 57.484 30.769 9.70 0.00 0.00 2.57
1915 7391 8.963725 TGCAATTAGAAATCATGAGACTCAATT 58.036 29.630 9.70 2.85 0.00 2.32
1916 7392 9.448294 GCAATTAGAAATCATGAGACTCAATTC 57.552 33.333 9.70 11.36 0.00 2.17
1921 7397 8.053026 AGAAATCATGAGACTCAATTCTTTGG 57.947 34.615 9.70 0.00 33.44 3.28
1922 7398 7.668886 AGAAATCATGAGACTCAATTCTTTGGT 59.331 33.333 9.70 0.00 33.44 3.67
1926 7402 5.047566 TGAGACTCAATTCTTTGGTCCAA 57.952 39.130 1.64 0.00 35.42 3.53
1953 7430 3.681593 TGGCCTGACCATTTGAATTTG 57.318 42.857 3.32 0.00 46.36 2.32
1954 7431 3.237746 TGGCCTGACCATTTGAATTTGA 58.762 40.909 3.32 0.00 46.36 2.69
1955 7432 3.258872 TGGCCTGACCATTTGAATTTGAG 59.741 43.478 3.32 0.00 46.36 3.02
1959 7436 5.232463 CCTGACCATTTGAATTTGAGTTGG 58.768 41.667 0.00 0.00 0.00 3.77
1961 7438 4.898265 TGACCATTTGAATTTGAGTTGGGA 59.102 37.500 0.00 0.00 0.00 4.37
1962 7439 5.543405 TGACCATTTGAATTTGAGTTGGGAT 59.457 36.000 0.00 0.00 0.00 3.85
1963 7440 5.797051 ACCATTTGAATTTGAGTTGGGATG 58.203 37.500 0.00 0.00 0.00 3.51
1964 7441 5.180271 CCATTTGAATTTGAGTTGGGATGG 58.820 41.667 0.00 0.00 0.00 3.51
1965 7442 5.046448 CCATTTGAATTTGAGTTGGGATGGA 60.046 40.000 0.00 0.00 33.81 3.41
1967 7444 3.091545 TGAATTTGAGTTGGGATGGAGC 58.908 45.455 0.00 0.00 0.00 4.70
1968 7445 3.245371 TGAATTTGAGTTGGGATGGAGCT 60.245 43.478 0.00 0.00 0.00 4.09
1969 7446 2.496899 TTTGAGTTGGGATGGAGCTC 57.503 50.000 4.71 4.71 0.00 4.09
1970 7447 1.361204 TTGAGTTGGGATGGAGCTCA 58.639 50.000 17.19 1.87 34.80 4.26
1971 7448 1.588239 TGAGTTGGGATGGAGCTCAT 58.412 50.000 17.19 7.21 39.13 2.90
1972 7449 1.918262 TGAGTTGGGATGGAGCTCATT 59.082 47.619 17.19 1.00 35.97 2.57
1973 7450 2.092753 TGAGTTGGGATGGAGCTCATTC 60.093 50.000 17.19 11.14 35.97 2.67
1974 7451 2.172293 GAGTTGGGATGGAGCTCATTCT 59.828 50.000 17.19 1.90 35.97 2.40
1975 7452 2.579860 AGTTGGGATGGAGCTCATTCTT 59.420 45.455 17.19 0.00 35.97 2.52
1976 7453 3.011032 AGTTGGGATGGAGCTCATTCTTT 59.989 43.478 17.19 0.00 35.97 2.52
1977 7454 3.744940 TGGGATGGAGCTCATTCTTTT 57.255 42.857 17.19 0.00 35.97 2.27
1978 7455 4.051661 TGGGATGGAGCTCATTCTTTTT 57.948 40.909 17.19 0.00 35.97 1.94
2041 7530 4.725556 TTTTGACTACGTGATGCAACTC 57.274 40.909 0.00 0.00 0.00 3.01
2042 7531 3.378911 TTGACTACGTGATGCAACTCA 57.621 42.857 0.00 0.00 0.00 3.41
2045 7534 4.314961 TGACTACGTGATGCAACTCATTT 58.685 39.130 0.00 0.00 35.05 2.32
2061 7550 8.807581 GCAACTCATTTAATTACAATAACCAGC 58.192 33.333 0.00 0.00 0.00 4.85
2072 7561 0.463833 ATAACCAGCGGCTAGGCAAC 60.464 55.000 17.45 7.66 34.64 4.17
2152 7656 0.663568 CTTGCTGCTGTTTGCTCTGC 60.664 55.000 0.00 0.00 43.37 4.26
2214 7718 2.747396 TGTTTGCTGGAATGGATTGC 57.253 45.000 0.00 0.00 0.00 3.56
2220 7724 1.202604 GCTGGAATGGATTGCATTGGG 60.203 52.381 8.23 0.07 37.49 4.12
2221 7725 0.831966 TGGAATGGATTGCATTGGGC 59.168 50.000 8.23 0.00 45.13 5.36
2226 7730 1.766494 TGGATTGCATTGGGCTGTAG 58.234 50.000 0.00 0.00 45.15 2.74
2247 7751 7.925993 TGTAGTGAATTTCAGTTGTTTACCTG 58.074 34.615 11.81 0.00 31.49 4.00
2248 7752 6.391227 AGTGAATTTCAGTTGTTTACCTGG 57.609 37.500 0.00 0.00 0.00 4.45
2254 7758 3.826524 TCAGTTGTTTACCTGGAATGCA 58.173 40.909 0.00 0.00 0.00 3.96
2255 7759 3.568007 TCAGTTGTTTACCTGGAATGCAC 59.432 43.478 0.00 0.00 0.00 4.57
2269 7773 4.361451 GAATGCACATTCTTCATTCCGT 57.639 40.909 14.66 0.00 42.85 4.69
2283 7787 3.509575 TCATTCCGTTCCCCAATTTCTTG 59.490 43.478 0.00 0.00 0.00 3.02
2284 7788 2.668144 TCCGTTCCCCAATTTCTTGT 57.332 45.000 0.00 0.00 0.00 3.16
2287 7791 2.029380 CCGTTCCCCAATTTCTTGTTCC 60.029 50.000 0.00 0.00 0.00 3.62
2291 7795 1.067635 CCCCAATTTCTTGTTCCGCTG 60.068 52.381 0.00 0.00 0.00 5.18
2294 7798 3.254657 CCCAATTTCTTGTTCCGCTGTTA 59.745 43.478 0.00 0.00 0.00 2.41
2298 7802 2.080286 TCTTGTTCCGCTGTTAGCTC 57.920 50.000 0.00 0.00 39.60 4.09
2318 7822 5.645497 AGCTCTGGTCTTTGATTCATGTTAC 59.355 40.000 0.00 0.00 0.00 2.50
2334 7838 3.322369 TGTTACTGTGTTAGGATGCACG 58.678 45.455 0.00 0.00 38.36 5.34
2338 7842 2.233676 ACTGTGTTAGGATGCACGATGA 59.766 45.455 0.00 0.00 38.36 2.92
2347 7851 1.594862 GATGCACGATGAACTGGCTAC 59.405 52.381 0.00 0.00 0.00 3.58
2361 7865 0.670546 GGCTACTGCTTGTTCGCTCA 60.671 55.000 0.00 0.00 39.59 4.26
2368 7872 1.536766 TGCTTGTTCGCTCAAATGGAG 59.463 47.619 0.00 0.00 46.93 3.86
2387 7891 4.780554 TGGAGTGGATATGGTTGTAGTGAA 59.219 41.667 0.00 0.00 0.00 3.18
2404 7908 2.740981 GTGAATGTCAGGCTCTGTTGAG 59.259 50.000 2.68 0.00 42.96 3.02
2425 7929 5.658634 TGAGCTACATCTGTGTATTCTTCCT 59.341 40.000 0.00 0.00 39.93 3.36
2433 7937 3.581755 TGTGTATTCTTCCTTCCGTTCG 58.418 45.455 0.00 0.00 0.00 3.95
2434 7938 2.347755 GTGTATTCTTCCTTCCGTTCGC 59.652 50.000 0.00 0.00 0.00 4.70
2436 7940 3.444742 TGTATTCTTCCTTCCGTTCGCTA 59.555 43.478 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.127054 ACACTAAAATCTGTATAGCCAGAGCA 60.127 38.462 0.00 0.00 44.25 4.26
8 9 7.706281 CAGACACTAAAATCTGTATAGCCAG 57.294 40.000 0.00 0.00 38.03 4.85
23 24 5.082251 TCTCTCGTAGCTACAGACACTAA 57.918 43.478 23.21 3.22 0.00 2.24
29 30 3.388350 TCCATCTCTCTCGTAGCTACAGA 59.612 47.826 23.21 20.57 0.00 3.41
30 31 3.734463 TCCATCTCTCTCGTAGCTACAG 58.266 50.000 23.21 17.90 0.00 2.74
68 69 8.141835 ACTTTAATCAAAAAGCAACCACAATC 57.858 30.769 0.00 0.00 39.59 2.67
74 75 7.148323 ACACCAAACTTTAATCAAAAAGCAACC 60.148 33.333 0.00 0.00 39.59 3.77
75 76 7.747888 ACACCAAACTTTAATCAAAAAGCAAC 58.252 30.769 0.00 0.00 39.59 4.17
76 77 7.913674 ACACCAAACTTTAATCAAAAAGCAA 57.086 28.000 0.00 0.00 39.59 3.91
78 79 8.196802 AGAACACCAAACTTTAATCAAAAAGC 57.803 30.769 0.00 0.00 39.59 3.51
83 84 8.081633 CAGCATAGAACACCAAACTTTAATCAA 58.918 33.333 0.00 0.00 0.00 2.57
84 85 7.230510 ACAGCATAGAACACCAAACTTTAATCA 59.769 33.333 0.00 0.00 0.00 2.57
85 86 7.593825 ACAGCATAGAACACCAAACTTTAATC 58.406 34.615 0.00 0.00 0.00 1.75
86 87 7.524717 ACAGCATAGAACACCAAACTTTAAT 57.475 32.000 0.00 0.00 0.00 1.40
87 88 6.952773 ACAGCATAGAACACCAAACTTTAA 57.047 33.333 0.00 0.00 0.00 1.52
88 89 6.952773 AACAGCATAGAACACCAAACTTTA 57.047 33.333 0.00 0.00 0.00 1.85
89 90 5.852282 AACAGCATAGAACACCAAACTTT 57.148 34.783 0.00 0.00 0.00 2.66
90 91 5.852282 AAACAGCATAGAACACCAAACTT 57.148 34.783 0.00 0.00 0.00 2.66
91 92 6.952773 TTAAACAGCATAGAACACCAAACT 57.047 33.333 0.00 0.00 0.00 2.66
92 93 7.200455 AGTTTAAACAGCATAGAACACCAAAC 58.800 34.615 20.06 0.00 0.00 2.93
93 94 7.341445 AGTTTAAACAGCATAGAACACCAAA 57.659 32.000 20.06 0.00 0.00 3.28
94 95 6.952773 AGTTTAAACAGCATAGAACACCAA 57.047 33.333 20.06 0.00 0.00 3.67
96 97 7.519002 CACTAGTTTAAACAGCATAGAACACC 58.481 38.462 20.06 0.00 0.00 4.16
97 98 7.015877 GCACTAGTTTAAACAGCATAGAACAC 58.984 38.462 20.06 3.24 0.00 3.32
98 99 6.148811 GGCACTAGTTTAAACAGCATAGAACA 59.851 38.462 20.06 0.00 0.00 3.18
99 100 6.148811 TGGCACTAGTTTAAACAGCATAGAAC 59.851 38.462 20.06 9.74 0.00 3.01
100 101 6.234920 TGGCACTAGTTTAAACAGCATAGAA 58.765 36.000 20.06 0.00 0.00 2.10
101 102 5.800296 TGGCACTAGTTTAAACAGCATAGA 58.200 37.500 20.06 0.00 0.00 1.98
102 103 6.683974 ATGGCACTAGTTTAAACAGCATAG 57.316 37.500 20.06 14.15 0.00 2.23
103 104 7.444183 GGATATGGCACTAGTTTAAACAGCATA 59.556 37.037 20.06 15.36 0.00 3.14
104 105 6.263168 GGATATGGCACTAGTTTAAACAGCAT 59.737 38.462 20.06 14.11 0.00 3.79
105 106 5.588648 GGATATGGCACTAGTTTAAACAGCA 59.411 40.000 20.06 9.16 0.00 4.41
106 107 5.823045 AGGATATGGCACTAGTTTAAACAGC 59.177 40.000 20.06 16.17 0.00 4.40
107 108 7.865706 AAGGATATGGCACTAGTTTAAACAG 57.134 36.000 20.06 16.01 0.00 3.16
108 109 7.362574 GCAAAGGATATGGCACTAGTTTAAACA 60.363 37.037 20.06 5.82 0.00 2.83
109 110 6.972901 GCAAAGGATATGGCACTAGTTTAAAC 59.027 38.462 10.47 10.47 0.00 2.01
110 111 6.661377 TGCAAAGGATATGGCACTAGTTTAAA 59.339 34.615 0.00 0.00 0.00 1.52
111 112 6.184068 TGCAAAGGATATGGCACTAGTTTAA 58.816 36.000 0.00 0.00 0.00 1.52
112 113 5.750524 TGCAAAGGATATGGCACTAGTTTA 58.249 37.500 0.00 0.00 0.00 2.01
113 114 4.599041 TGCAAAGGATATGGCACTAGTTT 58.401 39.130 0.00 0.00 0.00 2.66
114 115 4.235079 TGCAAAGGATATGGCACTAGTT 57.765 40.909 0.00 0.00 0.00 2.24
174 175 6.486657 AGAAGTAGCAGACAACAGCAATTTTA 59.513 34.615 0.00 0.00 0.00 1.52
177 178 4.392940 AGAAGTAGCAGACAACAGCAATT 58.607 39.130 0.00 0.00 0.00 2.32
178 179 4.013267 AGAAGTAGCAGACAACAGCAAT 57.987 40.909 0.00 0.00 0.00 3.56
179 180 3.475566 AGAAGTAGCAGACAACAGCAA 57.524 42.857 0.00 0.00 0.00 3.91
180 181 3.320826 TGTAGAAGTAGCAGACAACAGCA 59.679 43.478 0.00 0.00 0.00 4.41
181 182 3.914312 TGTAGAAGTAGCAGACAACAGC 58.086 45.455 0.00 0.00 0.00 4.40
182 183 5.960113 AGATGTAGAAGTAGCAGACAACAG 58.040 41.667 0.00 0.00 0.00 3.16
183 184 5.984695 AGATGTAGAAGTAGCAGACAACA 57.015 39.130 0.00 0.00 0.00 3.33
184 185 6.647067 ACAAAGATGTAGAAGTAGCAGACAAC 59.353 38.462 0.00 0.00 38.24 3.32
185 186 6.759272 ACAAAGATGTAGAAGTAGCAGACAA 58.241 36.000 0.00 0.00 38.24 3.18
186 187 6.346477 ACAAAGATGTAGAAGTAGCAGACA 57.654 37.500 0.00 0.00 38.24 3.41
187 188 8.934507 ATTACAAAGATGTAGAAGTAGCAGAC 57.065 34.615 0.00 0.00 42.72 3.51
193 194 9.976511 CCCGATTATTACAAAGATGTAGAAGTA 57.023 33.333 0.00 0.00 42.72 2.24
194 195 7.931948 CCCCGATTATTACAAAGATGTAGAAGT 59.068 37.037 0.00 0.00 42.72 3.01
195 196 7.095187 GCCCCGATTATTACAAAGATGTAGAAG 60.095 40.741 0.00 0.00 42.72 2.85
196 197 6.708949 GCCCCGATTATTACAAAGATGTAGAA 59.291 38.462 0.00 0.00 42.72 2.10
197 198 6.183361 TGCCCCGATTATTACAAAGATGTAGA 60.183 38.462 0.00 0.00 42.72 2.59
198 199 5.995282 TGCCCCGATTATTACAAAGATGTAG 59.005 40.000 0.00 0.00 42.72 2.74
199 200 5.931294 TGCCCCGATTATTACAAAGATGTA 58.069 37.500 0.00 0.00 41.05 2.29
200 201 4.787551 TGCCCCGATTATTACAAAGATGT 58.212 39.130 0.00 0.00 43.74 3.06
201 202 5.049405 GTCTGCCCCGATTATTACAAAGATG 60.049 44.000 0.00 0.00 0.00 2.90
202 203 5.063880 GTCTGCCCCGATTATTACAAAGAT 58.936 41.667 0.00 0.00 0.00 2.40
203 204 4.080807 TGTCTGCCCCGATTATTACAAAGA 60.081 41.667 0.00 0.00 0.00 2.52
204 205 4.196193 TGTCTGCCCCGATTATTACAAAG 58.804 43.478 0.00 0.00 0.00 2.77
205 206 4.223556 TGTCTGCCCCGATTATTACAAA 57.776 40.909 0.00 0.00 0.00 2.83
206 207 3.916359 TGTCTGCCCCGATTATTACAA 57.084 42.857 0.00 0.00 0.00 2.41
207 208 4.133820 CAATGTCTGCCCCGATTATTACA 58.866 43.478 0.00 0.00 0.00 2.41
208 209 4.134563 ACAATGTCTGCCCCGATTATTAC 58.865 43.478 0.00 0.00 0.00 1.89
209 210 4.431416 ACAATGTCTGCCCCGATTATTA 57.569 40.909 0.00 0.00 0.00 0.98
210 211 3.297134 ACAATGTCTGCCCCGATTATT 57.703 42.857 0.00 0.00 0.00 1.40
211 212 3.297134 AACAATGTCTGCCCCGATTAT 57.703 42.857 0.00 0.00 0.00 1.28
212 213 2.799126 AACAATGTCTGCCCCGATTA 57.201 45.000 0.00 0.00 0.00 1.75
213 214 1.923356 AAACAATGTCTGCCCCGATT 58.077 45.000 0.00 0.00 0.00 3.34
214 215 1.923356 AAAACAATGTCTGCCCCGAT 58.077 45.000 0.00 0.00 0.00 4.18
215 216 1.339610 CAAAAACAATGTCTGCCCCGA 59.660 47.619 0.00 0.00 0.00 5.14
216 217 1.339610 TCAAAAACAATGTCTGCCCCG 59.660 47.619 0.00 0.00 0.00 5.73
217 218 3.467374 TTCAAAAACAATGTCTGCCCC 57.533 42.857 0.00 0.00 0.00 5.80
218 219 4.273235 CCTTTTCAAAAACAATGTCTGCCC 59.727 41.667 0.00 0.00 0.00 5.36
219 220 5.115480 TCCTTTTCAAAAACAATGTCTGCC 58.885 37.500 0.00 0.00 0.00 4.85
220 221 6.258507 ACATCCTTTTCAAAAACAATGTCTGC 59.741 34.615 0.00 0.00 29.11 4.26
221 222 7.775397 ACATCCTTTTCAAAAACAATGTCTG 57.225 32.000 0.00 0.00 29.11 3.51
222 223 7.823799 ACAACATCCTTTTCAAAAACAATGTCT 59.176 29.630 9.45 0.00 31.75 3.41
223 224 7.973601 ACAACATCCTTTTCAAAAACAATGTC 58.026 30.769 9.45 0.00 31.75 3.06
224 225 7.920160 ACAACATCCTTTTCAAAAACAATGT 57.080 28.000 5.50 5.50 33.12 2.71
225 226 9.623350 AAAACAACATCCTTTTCAAAAACAATG 57.377 25.926 0.00 0.00 0.00 2.82
251 252 8.934825 GCAGCATTTTGTTTATATTTTCAAGGA 58.065 29.630 0.00 0.00 0.00 3.36
252 253 8.938906 AGCAGCATTTTGTTTATATTTTCAAGG 58.061 29.630 0.00 0.00 0.00 3.61
254 255 8.229137 GCAGCAGCATTTTGTTTATATTTTCAA 58.771 29.630 0.00 0.00 41.58 2.69
255 256 7.741198 GCAGCAGCATTTTGTTTATATTTTCA 58.259 30.769 0.00 0.00 41.58 2.69
273 274 5.750650 ACAAAAATACAAAATTGCAGCAGC 58.249 33.333 0.00 0.00 42.57 5.25
274 275 9.881529 AATAACAAAAATACAAAATTGCAGCAG 57.118 25.926 0.00 0.00 0.00 4.24
275 276 9.875675 GAATAACAAAAATACAAAATTGCAGCA 57.124 25.926 0.00 0.00 0.00 4.41
276 277 9.328721 GGAATAACAAAAATACAAAATTGCAGC 57.671 29.630 0.00 0.00 0.00 5.25
290 291 9.757227 ACGAAATGAAGAATGGAATAACAAAAA 57.243 25.926 0.00 0.00 0.00 1.94
291 292 9.190858 CACGAAATGAAGAATGGAATAACAAAA 57.809 29.630 0.00 0.00 0.00 2.44
292 293 7.328249 GCACGAAATGAAGAATGGAATAACAAA 59.672 33.333 0.00 0.00 0.00 2.83
293 294 6.806249 GCACGAAATGAAGAATGGAATAACAA 59.194 34.615 0.00 0.00 0.00 2.83
294 295 6.150976 AGCACGAAATGAAGAATGGAATAACA 59.849 34.615 0.00 0.00 0.00 2.41
295 296 6.555315 AGCACGAAATGAAGAATGGAATAAC 58.445 36.000 0.00 0.00 0.00 1.89
296 297 6.757897 AGCACGAAATGAAGAATGGAATAA 57.242 33.333 0.00 0.00 0.00 1.40
297 298 6.183360 GGAAGCACGAAATGAAGAATGGAATA 60.183 38.462 0.00 0.00 0.00 1.75
298 299 5.393461 GGAAGCACGAAATGAAGAATGGAAT 60.393 40.000 0.00 0.00 0.00 3.01
299 300 4.082787 GGAAGCACGAAATGAAGAATGGAA 60.083 41.667 0.00 0.00 0.00 3.53
300 301 3.440173 GGAAGCACGAAATGAAGAATGGA 59.560 43.478 0.00 0.00 0.00 3.41
301 302 3.728864 CGGAAGCACGAAATGAAGAATGG 60.729 47.826 0.00 0.00 35.47 3.16
302 303 3.125146 TCGGAAGCACGAAATGAAGAATG 59.875 43.478 0.00 0.00 40.34 2.67
303 304 3.334691 TCGGAAGCACGAAATGAAGAAT 58.665 40.909 0.00 0.00 40.34 2.40
304 305 2.761559 TCGGAAGCACGAAATGAAGAA 58.238 42.857 0.00 0.00 40.34 2.52
305 306 2.448926 TCGGAAGCACGAAATGAAGA 57.551 45.000 0.00 0.00 40.34 2.87
313 314 0.462225 TGTTTGGTTCGGAAGCACGA 60.462 50.000 21.09 10.90 38.84 4.35
314 315 0.316689 GTGTTTGGTTCGGAAGCACG 60.317 55.000 21.09 0.00 38.84 5.34
315 316 0.736053 TGTGTTTGGTTCGGAAGCAC 59.264 50.000 21.09 11.97 38.84 4.40
316 317 1.336440 CATGTGTTTGGTTCGGAAGCA 59.664 47.619 17.89 17.89 37.06 3.91
317 318 1.606668 TCATGTGTTTGGTTCGGAAGC 59.393 47.619 12.77 12.77 0.00 3.86
318 319 3.628017 GTTCATGTGTTTGGTTCGGAAG 58.372 45.455 0.00 0.00 0.00 3.46
319 320 2.032302 CGTTCATGTGTTTGGTTCGGAA 59.968 45.455 0.00 0.00 0.00 4.30
320 321 1.600013 CGTTCATGTGTTTGGTTCGGA 59.400 47.619 0.00 0.00 0.00 4.55
321 322 1.334599 CCGTTCATGTGTTTGGTTCGG 60.335 52.381 0.00 0.00 0.00 4.30
322 323 1.600013 TCCGTTCATGTGTTTGGTTCG 59.400 47.619 0.00 0.00 0.00 3.95
323 324 2.604614 GCTCCGTTCATGTGTTTGGTTC 60.605 50.000 0.00 0.00 0.00 3.62
324 325 1.336755 GCTCCGTTCATGTGTTTGGTT 59.663 47.619 0.00 0.00 0.00 3.67
325 326 0.951558 GCTCCGTTCATGTGTTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
326 327 0.240945 GGCTCCGTTCATGTGTTTGG 59.759 55.000 0.00 0.00 0.00 3.28
327 328 0.950836 TGGCTCCGTTCATGTGTTTG 59.049 50.000 0.00 0.00 0.00 2.93
328 329 1.909700 ATGGCTCCGTTCATGTGTTT 58.090 45.000 0.00 0.00 0.00 2.83
329 330 1.812571 GAATGGCTCCGTTCATGTGTT 59.187 47.619 14.30 0.00 40.57 3.32
330 331 1.453155 GAATGGCTCCGTTCATGTGT 58.547 50.000 14.30 0.00 40.57 3.72
331 332 0.734889 GGAATGGCTCCGTTCATGTG 59.265 55.000 19.25 0.00 42.12 3.21
332 333 3.175133 GGAATGGCTCCGTTCATGT 57.825 52.632 19.25 0.00 42.12 3.21
340 341 5.654497 CAAAAAGTAGAATGGAATGGCTCC 58.346 41.667 0.00 0.00 45.64 4.70
341 342 5.105063 GCAAAAAGTAGAATGGAATGGCTC 58.895 41.667 0.00 0.00 0.00 4.70
342 343 4.774200 AGCAAAAAGTAGAATGGAATGGCT 59.226 37.500 0.00 0.00 0.00 4.75
343 344 5.077134 AGCAAAAAGTAGAATGGAATGGC 57.923 39.130 0.00 0.00 0.00 4.40
344 345 5.106157 ACGAGCAAAAAGTAGAATGGAATGG 60.106 40.000 0.00 0.00 0.00 3.16
345 346 5.942872 ACGAGCAAAAAGTAGAATGGAATG 58.057 37.500 0.00 0.00 0.00 2.67
346 347 6.093633 GGTACGAGCAAAAAGTAGAATGGAAT 59.906 38.462 0.00 0.00 0.00 3.01
347 348 5.410439 GGTACGAGCAAAAAGTAGAATGGAA 59.590 40.000 0.00 0.00 0.00 3.53
348 349 4.933400 GGTACGAGCAAAAAGTAGAATGGA 59.067 41.667 0.00 0.00 0.00 3.41
349 350 5.217895 GGTACGAGCAAAAAGTAGAATGG 57.782 43.478 0.00 0.00 0.00 3.16
370 371 1.648504 GGTTCCGTTCCTATGTTCGG 58.351 55.000 0.00 0.00 43.65 4.30
371 372 1.135315 TCGGTTCCGTTCCTATGTTCG 60.135 52.381 11.04 0.00 0.00 3.95
375 376 2.150397 GGATCGGTTCCGTTCCTATG 57.850 55.000 25.15 0.00 42.04 2.23
384 385 3.543680 TCAGAGAAATGGATCGGTTCC 57.456 47.619 0.00 0.00 45.69 3.62
408 409 3.364549 TGTCATGGAATGGAATGGTTCC 58.635 45.455 1.77 1.77 46.73 3.62
409 410 4.019174 ACTGTCATGGAATGGAATGGTTC 58.981 43.478 0.00 0.00 46.73 3.62
410 411 4.051661 ACTGTCATGGAATGGAATGGTT 57.948 40.909 0.00 0.00 46.73 3.67
412 413 3.131577 CCAACTGTCATGGAATGGAATGG 59.868 47.826 0.00 0.00 46.73 3.16
413 414 3.765511 ACCAACTGTCATGGAATGGAATG 59.234 43.478 5.55 0.00 46.73 2.67
414 415 4.051661 ACCAACTGTCATGGAATGGAAT 57.948 40.909 5.55 0.00 46.73 3.01
415 416 3.524095 ACCAACTGTCATGGAATGGAA 57.476 42.857 5.55 0.00 46.73 3.53
416 417 3.420893 GAACCAACTGTCATGGAATGGA 58.579 45.455 5.55 0.00 46.73 3.41
417 418 2.493278 GGAACCAACTGTCATGGAATGG 59.507 50.000 5.55 0.00 46.73 3.16
418 419 5.048516 TCAGGAACCAACTGTCATGGAATG 61.049 45.833 5.55 0.00 40.56 2.67
419 420 3.074390 TCAGGAACCAACTGTCATGGAAT 59.926 43.478 5.55 0.00 40.56 3.01
421 422 2.054021 TCAGGAACCAACTGTCATGGA 58.946 47.619 5.55 0.00 40.56 3.41
422 423 2.554032 GTTCAGGAACCAACTGTCATGG 59.446 50.000 0.64 0.00 43.84 3.66
434 435 0.030235 GGCGTGTTTGGTTCAGGAAC 59.970 55.000 3.58 3.58 40.45 3.62
435 436 1.104577 GGGCGTGTTTGGTTCAGGAA 61.105 55.000 0.00 0.00 0.00 3.36
436 437 1.527380 GGGCGTGTTTGGTTCAGGA 60.527 57.895 0.00 0.00 0.00 3.86
437 438 1.388065 TTGGGCGTGTTTGGTTCAGG 61.388 55.000 0.00 0.00 0.00 3.86
438 439 0.457851 TTTGGGCGTGTTTGGTTCAG 59.542 50.000 0.00 0.00 0.00 3.02
439 440 0.457851 CTTTGGGCGTGTTTGGTTCA 59.542 50.000 0.00 0.00 0.00 3.18
442 443 0.968393 ACACTTTGGGCGTGTTTGGT 60.968 50.000 0.00 0.00 42.56 3.67
443 444 1.813192 ACACTTTGGGCGTGTTTGG 59.187 52.632 0.00 0.00 42.56 3.28
447 448 0.454196 GTTGAACACTTTGGGCGTGT 59.546 50.000 0.00 0.00 46.77 4.49
448 449 0.453793 TGTTGAACACTTTGGGCGTG 59.546 50.000 0.00 0.00 38.32 5.34
449 450 1.336755 GATGTTGAACACTTTGGGCGT 59.663 47.619 0.00 0.00 0.00 5.68
450 451 1.335872 GGATGTTGAACACTTTGGGCG 60.336 52.381 0.00 0.00 0.00 6.13
451 452 1.686052 TGGATGTTGAACACTTTGGGC 59.314 47.619 0.00 0.00 0.00 5.36
452 453 3.861886 GCATGGATGTTGAACACTTTGGG 60.862 47.826 0.00 0.00 0.00 4.12
453 454 3.243805 TGCATGGATGTTGAACACTTTGG 60.244 43.478 0.00 0.00 0.00 3.28
466 467 3.500982 CGTTTGTTTACCTGCATGGATG 58.499 45.455 8.91 0.00 39.71 3.51
476 477 2.745821 CCCTAGAAGGCGTTTGTTTACC 59.254 50.000 0.00 0.00 32.73 2.85
497 498 5.993748 TTGATATTGGGGTGTTTCTTTCC 57.006 39.130 0.00 0.00 0.00 3.13
523 524 1.826385 ATTTCCCTGCTTTCCACGAG 58.174 50.000 0.00 0.00 0.00 4.18
533 534 4.957759 TTTAGAAAGCGTATTTCCCTGC 57.042 40.909 10.43 0.00 0.00 4.85
551 552 5.069648 TCAATGTTGTTGCCAGGACAATTTA 59.930 36.000 0.00 0.00 39.03 1.40
573 574 2.736144 ATGTCGAAGGCGTAAACTCA 57.264 45.000 0.00 0.00 38.98 3.41
590 591 2.279517 GCCCGTGGCGAGACTATG 60.280 66.667 0.00 0.00 39.62 2.23
871 898 1.852157 AGGTTGGTGCCAGGGATCA 60.852 57.895 0.00 0.00 0.00 2.92
873 900 1.852157 TGAGGTTGGTGCCAGGGAT 60.852 57.895 0.00 0.00 0.00 3.85
939 972 1.070134 GACTTGTCTGTGTGGTGGCTA 59.930 52.381 0.00 0.00 0.00 3.93
950 1001 1.068588 TCGGTGAGGTTGACTTGTCTG 59.931 52.381 2.35 0.00 0.00 3.51
985 1036 2.159310 CCGACATCTTCTCGCTTCTCTT 60.159 50.000 0.00 0.00 0.00 2.85
1011 1068 3.983420 CCCTTGCCTCCCTTGCCA 61.983 66.667 0.00 0.00 0.00 4.92
1365 6490 2.151360 GCGAGATACTGCGATTACAACG 59.849 50.000 0.00 0.00 0.00 4.10
1367 6492 3.181490 ACAGCGAGATACTGCGATTACAA 60.181 43.478 0.00 0.00 38.79 2.41
1398 6523 4.386867 TCCATTCGATCCTACAGAACAC 57.613 45.455 0.00 0.00 0.00 3.32
1400 6525 4.752101 CCATTCCATTCGATCCTACAGAAC 59.248 45.833 0.00 0.00 0.00 3.01
1426 6551 8.129161 TCAACGACGAACTAGTTTAATTTCAA 57.871 30.769 10.02 0.00 0.00 2.69
1427 6552 7.697352 TCAACGACGAACTAGTTTAATTTCA 57.303 32.000 10.02 0.00 0.00 2.69
1428 6553 8.976715 TTTCAACGACGAACTAGTTTAATTTC 57.023 30.769 10.02 1.81 0.00 2.17
1429 6554 9.590088 GATTTCAACGACGAACTAGTTTAATTT 57.410 29.630 10.02 0.00 0.00 1.82
1430 6555 8.985805 AGATTTCAACGACGAACTAGTTTAATT 58.014 29.630 10.02 0.00 0.00 1.40
1434 6559 5.333111 GCAGATTTCAACGACGAACTAGTTT 60.333 40.000 10.02 0.00 0.00 2.66
1443 6568 1.455786 ACGAAGCAGATTTCAACGACG 59.544 47.619 0.00 0.00 0.00 5.12
1444 6569 2.731976 AGACGAAGCAGATTTCAACGAC 59.268 45.455 0.00 0.00 0.00 4.34
1524 6685 2.093341 AGGGATGGTTCAAATTGCATGC 60.093 45.455 11.82 11.82 0.00 4.06
1525 6686 3.899052 AGGGATGGTTCAAATTGCATG 57.101 42.857 0.00 0.00 0.00 4.06
1526 6687 3.839490 TGAAGGGATGGTTCAAATTGCAT 59.161 39.130 0.00 0.00 30.89 3.96
1556 6721 2.622942 GGCATTTCACAGTCCAGACAAA 59.377 45.455 0.00 0.00 0.00 2.83
1557 6722 2.229792 GGCATTTCACAGTCCAGACAA 58.770 47.619 0.00 0.00 0.00 3.18
1559 6724 1.168714 GGGCATTTCACAGTCCAGAC 58.831 55.000 0.00 0.00 0.00 3.51
1581 6746 3.534357 TGGAATTGGGTTAAGCTTGGA 57.466 42.857 9.86 0.00 0.00 3.53
1608 6773 3.576982 TGAACATCGATACCTATCCACCC 59.423 47.826 0.00 0.00 0.00 4.61
1609 6774 4.866508 TGAACATCGATACCTATCCACC 57.133 45.455 0.00 0.00 0.00 4.61
1611 6776 8.593679 ACATTAATGAACATCGATACCTATCCA 58.406 33.333 22.16 0.00 0.00 3.41
1617 6782 7.490962 TGGAACATTAATGAACATCGATACC 57.509 36.000 22.16 9.30 0.00 2.73
1618 6783 7.587757 GCTTGGAACATTAATGAACATCGATAC 59.412 37.037 22.16 0.00 39.30 2.24
1620 6785 6.460123 GGCTTGGAACATTAATGAACATCGAT 60.460 38.462 22.16 0.00 39.30 3.59
1625 6790 5.183713 CAGAGGCTTGGAACATTAATGAACA 59.816 40.000 22.16 13.51 39.30 3.18
1626 6791 5.183904 ACAGAGGCTTGGAACATTAATGAAC 59.816 40.000 22.16 13.72 39.30 3.18
1642 6956 0.324285 CTGCTCCAGAAACAGAGGCT 59.676 55.000 0.00 0.00 32.44 4.58
1678 7000 3.393278 ACCACCTGCCTTTTACTCTGTTA 59.607 43.478 0.00 0.00 0.00 2.41
1688 7010 2.594592 GCACGACCACCTGCCTTT 60.595 61.111 0.00 0.00 0.00 3.11
1689 7011 3.560251 AGCACGACCACCTGCCTT 61.560 61.111 0.00 0.00 33.57 4.35
1725 7077 0.179034 AAGCAGATTCAGGCGATCCC 60.179 55.000 0.00 0.00 34.54 3.85
1727 7079 1.268437 GCAAAGCAGATTCAGGCGATC 60.268 52.381 0.00 0.00 34.54 3.69
1728 7080 0.737219 GCAAAGCAGATTCAGGCGAT 59.263 50.000 0.00 0.00 34.54 4.58
1729 7081 1.308069 GGCAAAGCAGATTCAGGCGA 61.308 55.000 0.00 0.00 34.54 5.54
1731 7083 1.138247 CGGCAAAGCAGATTCAGGC 59.862 57.895 0.00 0.00 0.00 4.85
1732 7084 1.138247 GCGGCAAAGCAGATTCAGG 59.862 57.895 0.00 0.00 37.05 3.86
1733 7085 0.098376 GAGCGGCAAAGCAGATTCAG 59.902 55.000 1.45 0.00 40.15 3.02
1734 7086 1.308069 GGAGCGGCAAAGCAGATTCA 61.308 55.000 1.45 0.00 40.15 2.57
1738 7150 3.612247 GAGGGAGCGGCAAAGCAGA 62.612 63.158 1.45 0.00 40.15 4.26
1781 7194 2.047061 ACACAACAGAGGCAGGTAGAA 58.953 47.619 0.00 0.00 0.00 2.10
1783 7196 2.417719 GAACACAACAGAGGCAGGTAG 58.582 52.381 0.00 0.00 0.00 3.18
1800 7219 7.597743 GCATTGATCATGAGATAAATTGGGAAC 59.402 37.037 0.09 0.00 33.76 3.62
1808 7227 6.016527 GGAAGCAGCATTGATCATGAGATAAA 60.017 38.462 0.09 0.00 34.31 1.40
1811 7230 3.821600 GGAAGCAGCATTGATCATGAGAT 59.178 43.478 0.09 0.00 34.31 2.75
1823 7242 3.019564 GGTTAAGTCATGGAAGCAGCAT 58.980 45.455 0.00 0.00 0.00 3.79
1837 7259 7.944729 ATAGCAGATTTTCATGTGGTTAAGT 57.055 32.000 0.00 0.00 35.99 2.24
1845 7267 6.320418 TGCATGAGAATAGCAGATTTTCATGT 59.680 34.615 27.42 8.41 45.08 3.21
1849 7271 8.781196 TCTAATGCATGAGAATAGCAGATTTTC 58.219 33.333 11.67 0.00 42.14 2.29
1865 7287 8.642020 GCAGTTAAAAGAAACTTCTAATGCATG 58.358 33.333 0.00 0.00 37.61 4.06
1868 7290 8.574196 TTGCAGTTAAAAGAAACTTCTAATGC 57.426 30.769 5.76 5.76 37.61 3.56
1885 7308 9.102757 GAGTCTCATGATTTCTAATTGCAGTTA 57.897 33.333 0.00 1.40 0.00 2.24
1902 7378 5.005740 TGGACCAAAGAATTGAGTCTCATG 58.994 41.667 2.68 0.00 38.94 3.07
1904 7380 4.705110 TGGACCAAAGAATTGAGTCTCA 57.295 40.909 0.00 0.00 38.94 3.27
1917 7393 1.616159 GCCAGCTACTTTGGACCAAA 58.384 50.000 18.59 18.59 37.96 3.28
1918 7394 0.251165 GGCCAGCTACTTTGGACCAA 60.251 55.000 1.69 1.69 37.80 3.67
1919 7395 1.133809 AGGCCAGCTACTTTGGACCA 61.134 55.000 5.01 0.00 45.38 4.02
1920 7396 0.678048 CAGGCCAGCTACTTTGGACC 60.678 60.000 5.01 0.00 45.38 4.46
1921 7397 0.324943 TCAGGCCAGCTACTTTGGAC 59.675 55.000 5.01 0.00 44.54 4.02
1922 7398 0.324943 GTCAGGCCAGCTACTTTGGA 59.675 55.000 5.01 0.00 37.96 3.53
1926 7402 4.232905 TGGTCAGGCCAGCTACTT 57.767 55.556 5.01 0.00 43.61 2.24
1952 7429 1.588239 ATGAGCTCCATCCCAACTCA 58.412 50.000 12.15 0.00 41.28 3.41
1953 7430 2.172293 AGAATGAGCTCCATCCCAACTC 59.828 50.000 12.15 0.00 33.53 3.01
1954 7431 2.203584 AGAATGAGCTCCATCCCAACT 58.796 47.619 12.15 0.00 33.53 3.16
1955 7432 2.725221 AGAATGAGCTCCATCCCAAC 57.275 50.000 12.15 0.00 33.53 3.77
1979 7456 3.489355 TGAGCTCCATCTGCTTCAAAAA 58.511 40.909 12.15 0.00 41.30 1.94
1980 7457 3.144657 TGAGCTCCATCTGCTTCAAAA 57.855 42.857 12.15 0.00 41.30 2.44
1981 7458 2.865119 TGAGCTCCATCTGCTTCAAA 57.135 45.000 12.15 0.00 41.30 2.69
1982 7459 3.054582 AGAATGAGCTCCATCTGCTTCAA 60.055 43.478 12.15 0.00 41.30 2.69
1983 7460 2.504585 AGAATGAGCTCCATCTGCTTCA 59.495 45.455 12.15 0.00 41.30 3.02
1984 7461 3.196939 AGAATGAGCTCCATCTGCTTC 57.803 47.619 12.15 3.26 41.30 3.86
1985 7462 3.648507 AAGAATGAGCTCCATCTGCTT 57.351 42.857 16.50 7.18 41.30 3.91
1986 7463 3.280295 CAAAGAATGAGCTCCATCTGCT 58.720 45.455 16.50 6.91 44.24 4.24
1987 7464 2.358267 CCAAAGAATGAGCTCCATCTGC 59.642 50.000 16.50 0.00 33.53 4.26
1988 7465 3.618351 ACCAAAGAATGAGCTCCATCTG 58.382 45.455 16.50 8.83 33.53 2.90
1989 7466 3.681034 CGACCAAAGAATGAGCTCCATCT 60.681 47.826 12.15 11.76 33.53 2.90
1999 7476 5.376854 AATCCACTTTCGACCAAAGAATG 57.623 39.130 2.42 0.00 44.02 2.67
2041 7530 6.503524 AGCCGCTGGTTATTGTAATTAAATG 58.496 36.000 0.00 0.00 0.00 2.32
2042 7531 6.709018 AGCCGCTGGTTATTGTAATTAAAT 57.291 33.333 0.00 0.00 0.00 1.40
2045 7534 5.302360 CCTAGCCGCTGGTTATTGTAATTA 58.698 41.667 2.16 0.00 0.00 1.40
2152 7656 4.331992 CACATCCTAACATGAAGCACAGAG 59.668 45.833 0.00 0.00 0.00 3.35
2188 7692 2.400399 CATTCCAGCAAACAAGCAGTG 58.600 47.619 0.00 0.00 36.85 3.66
2214 7718 4.460382 ACTGAAATTCACTACAGCCCAATG 59.540 41.667 0.00 0.00 34.25 2.82
2220 7724 6.856426 GGTAAACAACTGAAATTCACTACAGC 59.144 38.462 0.00 0.00 34.25 4.40
2221 7725 8.070171 CAGGTAAACAACTGAAATTCACTACAG 58.930 37.037 0.00 0.00 36.86 2.74
2226 7730 6.385649 TCCAGGTAAACAACTGAAATTCAC 57.614 37.500 0.00 0.00 36.86 3.18
2248 7752 4.361451 ACGGAATGAAGAATGTGCATTC 57.639 40.909 15.00 15.00 45.66 2.67
2254 7758 2.041081 TGGGGAACGGAATGAAGAATGT 59.959 45.455 0.00 0.00 0.00 2.71
2255 7759 2.722094 TGGGGAACGGAATGAAGAATG 58.278 47.619 0.00 0.00 0.00 2.67
2269 7773 1.616374 GCGGAACAAGAAATTGGGGAA 59.384 47.619 0.00 0.00 0.00 3.97
2291 7795 5.645497 ACATGAATCAAAGACCAGAGCTAAC 59.355 40.000 0.00 0.00 0.00 2.34
2294 7798 4.298103 ACATGAATCAAAGACCAGAGCT 57.702 40.909 0.00 0.00 0.00 4.09
2298 7802 6.205464 ACACAGTAACATGAATCAAAGACCAG 59.795 38.462 0.00 0.00 0.00 4.00
2318 7822 2.892374 TCATCGTGCATCCTAACACAG 58.108 47.619 0.00 0.00 36.57 3.66
2334 7838 2.704572 ACAAGCAGTAGCCAGTTCATC 58.295 47.619 0.00 0.00 43.56 2.92
2338 7842 1.512926 CGAACAAGCAGTAGCCAGTT 58.487 50.000 0.00 0.00 43.56 3.16
2347 7851 1.536766 TCCATTTGAGCGAACAAGCAG 59.463 47.619 0.00 0.00 40.15 4.24
2361 7865 6.069673 TCACTACAACCATATCCACTCCATTT 60.070 38.462 0.00 0.00 0.00 2.32
2368 7872 6.112734 TGACATTCACTACAACCATATCCAC 58.887 40.000 0.00 0.00 0.00 4.02
2374 7878 3.009473 AGCCTGACATTCACTACAACCAT 59.991 43.478 0.00 0.00 0.00 3.55
2375 7879 2.371841 AGCCTGACATTCACTACAACCA 59.628 45.455 0.00 0.00 0.00 3.67
2404 7908 5.755861 GGAAGGAAGAATACACAGATGTAGC 59.244 44.000 0.00 0.00 44.51 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.