Multiple sequence alignment - TraesCS5A01G348000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G348000 chr5A 100.000 2662 0 0 1 2662 551040408 551043069 0.000000e+00 4916.0
1 TraesCS5A01G348000 chr5A 94.922 709 28 6 694 1400 550801687 550802389 0.000000e+00 1103.0
2 TraesCS5A01G348000 chr5A 88.038 836 57 20 693 1507 552078832 552078019 0.000000e+00 950.0
3 TraesCS5A01G348000 chr5A 88.525 122 10 2 2204 2325 552077358 552077241 7.680000e-31 145.0
4 TraesCS5A01G348000 chr5A 93.182 44 3 0 2505 2548 593123224 593123267 6.150000e-07 65.8
5 TraesCS5A01G348000 chr5B 87.188 1202 96 32 556 1727 530613064 530614237 0.000000e+00 1314.0
6 TraesCS5A01G348000 chr5B 88.744 844 62 19 693 1525 530974466 530973645 0.000000e+00 1002.0
7 TraesCS5A01G348000 chr5B 86.246 967 74 35 1750 2662 530614365 530615326 0.000000e+00 994.0
8 TraesCS5A01G348000 chr5B 86.036 845 81 26 696 1526 530609087 530609908 0.000000e+00 872.0
9 TraesCS5A01G348000 chr5B 86.490 718 68 18 694 1400 530334169 530334868 0.000000e+00 761.0
10 TraesCS5A01G348000 chr5B 75.540 278 36 18 2062 2339 530973019 530972774 1.010000e-19 108.0
11 TraesCS5A01G348000 chr5B 89.157 83 8 1 2256 2338 530610753 530610834 4.690000e-18 102.0
12 TraesCS5A01G348000 chr5B 95.238 63 3 0 2255 2317 530610644 530610706 1.690000e-17 100.0
13 TraesCS5A01G348000 chr5B 95.122 41 2 0 2507 2547 691153427 691153467 6.150000e-07 65.8
14 TraesCS5A01G348000 chr5D 86.943 965 71 24 776 1727 436578190 436579112 0.000000e+00 1033.0
15 TraesCS5A01G348000 chr5D 87.337 845 68 23 693 1525 436824469 436823652 0.000000e+00 931.0
16 TraesCS5A01G348000 chr5D 87.204 719 50 24 694 1400 436349167 436349855 0.000000e+00 780.0
17 TraesCS5A01G348000 chr5D 87.195 656 43 17 2023 2662 436579569 436580199 0.000000e+00 708.0
18 TraesCS5A01G348000 chr5D 81.010 416 53 11 342 732 436577775 436578189 9.260000e-80 307.0
19 TraesCS5A01G348000 chr5D 86.347 271 16 12 1750 2003 436579240 436579506 2.610000e-70 276.0
20 TraesCS5A01G348000 chr5D 80.000 275 30 14 2051 2325 436823055 436822806 2.110000e-41 180.0
21 TraesCS5A01G348000 chr5D 93.023 43 3 0 2508 2550 441127443 441127401 2.210000e-06 63.9
22 TraesCS5A01G348000 chr1B 83.650 263 34 9 1 260 148177679 148177423 3.420000e-59 239.0
23 TraesCS5A01G348000 chr1B 83.459 133 12 4 2023 2145 148507252 148507384 6.020000e-22 115.0
24 TraesCS5A01G348000 chr4A 82.520 246 38 4 14 257 60031237 60030995 7.470000e-51 211.0
25 TraesCS5A01G348000 chr7A 82.700 237 31 7 28 259 571740823 571740592 4.490000e-48 202.0
26 TraesCS5A01G348000 chr7A 84.211 114 17 1 22 135 339747854 339747966 2.800000e-20 110.0
27 TraesCS5A01G348000 chr4D 83.333 222 32 4 38 257 402542538 402542320 1.620000e-47 200.0
28 TraesCS5A01G348000 chr4D 93.023 43 3 0 2508 2550 358476935 358476893 2.210000e-06 63.9
29 TraesCS5A01G348000 chr4B 83.744 203 28 4 57 257 498387644 498387445 1.260000e-43 187.0
30 TraesCS5A01G348000 chr7D 81.988 161 20 7 57 215 294051490 294051337 7.730000e-26 128.0
31 TraesCS5A01G348000 chr7D 95.122 41 2 0 2507 2547 119897078 119897038 6.150000e-07 65.8
32 TraesCS5A01G348000 chr3A 93.182 44 3 0 2504 2547 568019713 568019756 6.150000e-07 65.8
33 TraesCS5A01G348000 chr3D 91.489 47 3 1 2503 2549 79510968 79510923 2.210000e-06 63.9
34 TraesCS5A01G348000 chr1A 95.000 40 2 0 2508 2547 507081461 507081500 2.210000e-06 63.9
35 TraesCS5A01G348000 chr2D 88.235 51 5 1 2507 2556 571544737 571544687 2.860000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G348000 chr5A 551040408 551043069 2661 False 4916.0 4916 100.00000 1 2662 1 chr5A.!!$F2 2661
1 TraesCS5A01G348000 chr5A 550801687 550802389 702 False 1103.0 1103 94.92200 694 1400 1 chr5A.!!$F1 706
2 TraesCS5A01G348000 chr5A 552077241 552078832 1591 True 547.5 950 88.28150 693 2325 2 chr5A.!!$R1 1632
3 TraesCS5A01G348000 chr5B 530334169 530334868 699 False 761.0 761 86.49000 694 1400 1 chr5B.!!$F1 706
4 TraesCS5A01G348000 chr5B 530609087 530615326 6239 False 676.4 1314 88.77300 556 2662 5 chr5B.!!$F3 2106
5 TraesCS5A01G348000 chr5B 530972774 530974466 1692 True 555.0 1002 82.14200 693 2339 2 chr5B.!!$R1 1646
6 TraesCS5A01G348000 chr5D 436349167 436349855 688 False 780.0 780 87.20400 694 1400 1 chr5D.!!$F1 706
7 TraesCS5A01G348000 chr5D 436577775 436580199 2424 False 581.0 1033 85.37375 342 2662 4 chr5D.!!$F2 2320
8 TraesCS5A01G348000 chr5D 436822806 436824469 1663 True 555.5 931 83.66850 693 2325 2 chr5D.!!$R2 1632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.036732 AGCCTGCAAAATCGAGTGGA 59.963 50.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1852 6276 0.185901 AGCAGGAAAGCAGGTTGGAA 59.814 50.0 0.0 0.0 36.85 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.182030 GGCGACGGAGAGTGGAAG 59.818 66.667 0.00 0.00 0.00 3.46
18 19 2.507324 GCGACGGAGAGTGGAAGC 60.507 66.667 0.00 0.00 0.00 3.86
19 20 2.962569 CGACGGAGAGTGGAAGCA 59.037 61.111 0.00 0.00 0.00 3.91
20 21 1.289066 CGACGGAGAGTGGAAGCAA 59.711 57.895 0.00 0.00 0.00 3.91
21 22 0.734253 CGACGGAGAGTGGAAGCAAG 60.734 60.000 0.00 0.00 0.00 4.01
22 23 0.603569 GACGGAGAGTGGAAGCAAGA 59.396 55.000 0.00 0.00 0.00 3.02
23 24 1.000955 GACGGAGAGTGGAAGCAAGAA 59.999 52.381 0.00 0.00 0.00 2.52
24 25 1.416401 ACGGAGAGTGGAAGCAAGAAA 59.584 47.619 0.00 0.00 0.00 2.52
25 26 1.801178 CGGAGAGTGGAAGCAAGAAAC 59.199 52.381 0.00 0.00 0.00 2.78
26 27 2.806745 CGGAGAGTGGAAGCAAGAAACA 60.807 50.000 0.00 0.00 0.00 2.83
27 28 2.810852 GGAGAGTGGAAGCAAGAAACAG 59.189 50.000 0.00 0.00 0.00 3.16
28 29 3.495100 GGAGAGTGGAAGCAAGAAACAGA 60.495 47.826 0.00 0.00 0.00 3.41
29 30 4.130118 GAGAGTGGAAGCAAGAAACAGAA 58.870 43.478 0.00 0.00 0.00 3.02
30 31 4.133078 AGAGTGGAAGCAAGAAACAGAAG 58.867 43.478 0.00 0.00 0.00 2.85
31 32 2.620585 AGTGGAAGCAAGAAACAGAAGC 59.379 45.455 0.00 0.00 0.00 3.86
32 33 1.603802 TGGAAGCAAGAAACAGAAGCG 59.396 47.619 0.00 0.00 0.00 4.68
33 34 1.068954 GGAAGCAAGAAACAGAAGCGG 60.069 52.381 0.00 0.00 0.00 5.52
34 35 1.873591 GAAGCAAGAAACAGAAGCGGA 59.126 47.619 0.00 0.00 0.00 5.54
35 36 1.230324 AGCAAGAAACAGAAGCGGAC 58.770 50.000 0.00 0.00 0.00 4.79
36 37 0.238553 GCAAGAAACAGAAGCGGACC 59.761 55.000 0.00 0.00 0.00 4.46
37 38 0.512952 CAAGAAACAGAAGCGGACCG 59.487 55.000 10.29 10.29 0.00 4.79
38 39 0.391597 AAGAAACAGAAGCGGACCGA 59.608 50.000 20.50 0.00 0.00 4.69
39 40 0.391597 AGAAACAGAAGCGGACCGAA 59.608 50.000 20.50 0.00 0.00 4.30
40 41 1.202604 AGAAACAGAAGCGGACCGAAA 60.203 47.619 20.50 0.00 0.00 3.46
41 42 1.804748 GAAACAGAAGCGGACCGAAAT 59.195 47.619 20.50 1.47 0.00 2.17
42 43 1.156736 AACAGAAGCGGACCGAAATG 58.843 50.000 20.50 12.31 0.00 2.32
43 44 0.673644 ACAGAAGCGGACCGAAATGG 60.674 55.000 20.50 5.89 46.41 3.16
62 63 1.618343 GGTTCACACCAATGGAAAGGG 59.382 52.381 6.16 0.00 43.61 3.95
63 64 1.618343 GTTCACACCAATGGAAAGGGG 59.382 52.381 6.16 0.00 0.00 4.79
64 65 1.153539 TCACACCAATGGAAAGGGGA 58.846 50.000 6.16 0.00 31.04 4.81
65 66 1.075374 TCACACCAATGGAAAGGGGAG 59.925 52.381 6.16 0.00 31.04 4.30
66 67 0.251787 ACACCAATGGAAAGGGGAGC 60.252 55.000 6.16 0.00 31.04 4.70
67 68 0.972471 CACCAATGGAAAGGGGAGCC 60.972 60.000 6.16 0.00 0.00 4.70
68 69 1.149133 ACCAATGGAAAGGGGAGCCT 61.149 55.000 6.16 0.00 0.00 4.58
69 70 0.685458 CCAATGGAAAGGGGAGCCTG 60.685 60.000 0.00 0.00 0.00 4.85
70 71 1.000866 AATGGAAAGGGGAGCCTGC 59.999 57.895 0.00 0.00 0.00 4.85
71 72 1.803453 AATGGAAAGGGGAGCCTGCA 61.803 55.000 0.00 0.00 0.00 4.41
72 73 1.803453 ATGGAAAGGGGAGCCTGCAA 61.803 55.000 0.00 0.00 0.00 4.08
73 74 1.228862 GGAAAGGGGAGCCTGCAAA 60.229 57.895 0.00 0.00 0.00 3.68
74 75 0.831711 GGAAAGGGGAGCCTGCAAAA 60.832 55.000 0.00 0.00 0.00 2.44
75 76 1.269958 GAAAGGGGAGCCTGCAAAAT 58.730 50.000 0.00 0.00 0.00 1.82
76 77 1.205655 GAAAGGGGAGCCTGCAAAATC 59.794 52.381 0.00 0.00 0.00 2.17
77 78 0.967380 AAGGGGAGCCTGCAAAATCG 60.967 55.000 0.00 0.00 0.00 3.34
78 79 1.378514 GGGGAGCCTGCAAAATCGA 60.379 57.895 0.00 0.00 0.00 3.59
79 80 1.379642 GGGGAGCCTGCAAAATCGAG 61.380 60.000 0.00 0.00 0.00 4.04
80 81 0.678048 GGGAGCCTGCAAAATCGAGT 60.678 55.000 0.00 0.00 0.00 4.18
81 82 0.449388 GGAGCCTGCAAAATCGAGTG 59.551 55.000 0.00 0.00 0.00 3.51
82 83 0.449388 GAGCCTGCAAAATCGAGTGG 59.551 55.000 0.00 0.00 0.00 4.00
83 84 0.036732 AGCCTGCAAAATCGAGTGGA 59.963 50.000 0.00 0.00 0.00 4.02
84 85 1.098050 GCCTGCAAAATCGAGTGGAT 58.902 50.000 0.00 0.00 36.78 3.41
86 87 2.682856 GCCTGCAAAATCGAGTGGATTA 59.317 45.455 0.34 0.00 44.59 1.75
87 88 3.487544 GCCTGCAAAATCGAGTGGATTAC 60.488 47.826 0.34 0.00 44.59 1.89
88 89 3.065371 CCTGCAAAATCGAGTGGATTACC 59.935 47.826 0.34 0.00 44.59 2.85
89 90 2.675844 TGCAAAATCGAGTGGATTACCG 59.324 45.455 0.34 0.00 44.59 4.02
90 91 2.538939 GCAAAATCGAGTGGATTACCGC 60.539 50.000 0.34 1.35 44.59 5.68
91 92 2.675844 CAAAATCGAGTGGATTACCGCA 59.324 45.455 0.34 0.00 44.59 5.69
92 93 2.277084 AAATCGAGTGGATTACCGCAC 58.723 47.619 0.34 0.00 44.59 5.34
93 94 2.354303 AAATCGAGTGGATTACCGCACA 60.354 45.455 0.34 0.00 44.59 4.57
94 95 4.472770 AAATCGAGTGGATTACCGCACAC 61.473 47.826 0.34 0.00 44.59 3.82
95 96 6.887486 AAATCGAGTGGATTACCGCACACA 62.887 45.833 0.34 0.00 44.59 3.72
98 99 0.732571 GTGGATTACCGCACACATGG 59.267 55.000 0.00 0.00 45.14 3.66
99 100 0.615850 TGGATTACCGCACACATGGA 59.384 50.000 0.00 0.00 39.42 3.41
100 101 1.299541 GGATTACCGCACACATGGAG 58.700 55.000 0.00 0.00 0.00 3.86
101 102 1.299541 GATTACCGCACACATGGAGG 58.700 55.000 0.00 0.00 0.00 4.30
102 103 0.908910 ATTACCGCACACATGGAGGA 59.091 50.000 0.00 0.00 0.00 3.71
103 104 0.687920 TTACCGCACACATGGAGGAA 59.312 50.000 0.00 0.00 0.00 3.36
104 105 0.687920 TACCGCACACATGGAGGAAA 59.312 50.000 0.00 0.00 0.00 3.13
105 106 0.038166 ACCGCACACATGGAGGAAAT 59.962 50.000 0.00 0.00 0.00 2.17
106 107 0.452987 CCGCACACATGGAGGAAATG 59.547 55.000 0.00 0.00 0.00 2.32
107 108 0.452987 CGCACACATGGAGGAAATGG 59.547 55.000 0.00 0.00 0.00 3.16
108 109 0.819582 GCACACATGGAGGAAATGGG 59.180 55.000 0.00 0.00 34.46 4.00
109 110 0.819582 CACACATGGAGGAAATGGGC 59.180 55.000 0.00 0.00 31.22 5.36
110 111 0.706433 ACACATGGAGGAAATGGGCT 59.294 50.000 0.00 0.00 31.22 5.19
111 112 1.341383 ACACATGGAGGAAATGGGCTC 60.341 52.381 0.00 0.00 31.22 4.70
112 113 0.107017 ACATGGAGGAAATGGGCTCG 60.107 55.000 0.00 0.00 0.00 5.03
113 114 1.152881 ATGGAGGAAATGGGCTCGC 60.153 57.895 0.00 0.00 0.00 5.03
114 115 2.897350 GGAGGAAATGGGCTCGCG 60.897 66.667 0.00 0.00 0.00 5.87
115 116 2.897350 GAGGAAATGGGCTCGCGG 60.897 66.667 6.13 0.00 0.00 6.46
116 117 3.385749 GAGGAAATGGGCTCGCGGA 62.386 63.158 6.13 0.00 0.00 5.54
117 118 2.203209 GGAAATGGGCTCGCGGAT 60.203 61.111 6.13 0.00 0.00 4.18
118 119 2.546494 GGAAATGGGCTCGCGGATG 61.546 63.158 6.13 0.00 0.00 3.51
119 120 3.186390 GAAATGGGCTCGCGGATGC 62.186 63.158 6.13 8.77 37.91 3.91
130 131 4.854924 CGGATGCGGGATGCCACA 62.855 66.667 3.39 0.00 45.60 4.17
131 132 2.440065 GGATGCGGGATGCCACAA 60.440 61.111 3.39 0.00 45.60 3.33
132 133 2.051518 GGATGCGGGATGCCACAAA 61.052 57.895 3.39 0.00 45.60 2.83
133 134 1.603236 GGATGCGGGATGCCACAAAA 61.603 55.000 3.39 0.00 45.60 2.44
134 135 0.246086 GATGCGGGATGCCACAAAAA 59.754 50.000 3.39 0.00 45.60 1.94
154 155 3.978460 AAAAATGCACGGACAACCC 57.022 47.368 0.00 0.00 0.00 4.11
172 173 1.561730 CGATTTGCGGATCTGCTCG 59.438 57.895 26.32 22.10 36.03 5.03
173 174 1.825285 CGATTTGCGGATCTGCTCGG 61.825 60.000 26.32 9.23 36.03 4.63
174 175 1.502163 GATTTGCGGATCTGCTCGGG 61.502 60.000 26.32 0.00 35.36 5.14
175 176 4.838152 TTGCGGATCTGCTCGGGC 62.838 66.667 26.32 0.00 39.26 6.13
187 188 2.520982 TCGGGCCGAGGATACAGG 60.521 66.667 27.46 0.00 39.34 4.00
188 189 2.520982 CGGGCCGAGGATACAGGA 60.521 66.667 24.41 0.00 38.73 3.86
189 190 1.908793 CGGGCCGAGGATACAGGAT 60.909 63.158 24.41 0.00 38.73 3.24
190 191 0.611062 CGGGCCGAGGATACAGGATA 60.611 60.000 24.41 0.00 38.73 2.59
191 192 1.187087 GGGCCGAGGATACAGGATAG 58.813 60.000 0.00 0.00 38.73 2.08
192 193 1.272536 GGGCCGAGGATACAGGATAGA 60.273 57.143 0.00 0.00 38.73 1.98
193 194 2.624557 GGGCCGAGGATACAGGATAGAT 60.625 54.545 0.00 0.00 38.73 1.98
194 195 2.691011 GGCCGAGGATACAGGATAGATC 59.309 54.545 0.00 0.00 38.73 2.75
206 207 2.835027 GGATAGATCCCACAAACCGAC 58.165 52.381 0.00 0.00 41.20 4.79
207 208 2.470821 GATAGATCCCACAAACCGACG 58.529 52.381 0.00 0.00 0.00 5.12
208 209 0.533491 TAGATCCCACAAACCGACGG 59.467 55.000 13.61 13.61 0.00 4.79
209 210 1.004200 GATCCCACAAACCGACGGT 60.004 57.895 15.37 15.37 37.65 4.83
211 212 0.686224 ATCCCACAAACCGACGGTTA 59.314 50.000 31.27 15.89 46.20 2.85
212 213 0.686224 TCCCACAAACCGACGGTTAT 59.314 50.000 31.27 20.00 46.20 1.89
213 214 1.072015 TCCCACAAACCGACGGTTATT 59.928 47.619 31.27 18.56 46.20 1.40
214 215 1.881324 CCCACAAACCGACGGTTATTT 59.119 47.619 31.27 14.52 46.20 1.40
215 216 3.072944 CCCACAAACCGACGGTTATTTA 58.927 45.455 31.27 0.00 46.20 1.40
216 217 3.501445 CCCACAAACCGACGGTTATTTAA 59.499 43.478 31.27 0.00 46.20 1.52
217 218 4.156373 CCCACAAACCGACGGTTATTTAAT 59.844 41.667 31.27 12.98 46.20 1.40
218 219 5.090083 CCACAAACCGACGGTTATTTAATG 58.910 41.667 31.27 24.91 46.20 1.90
219 220 5.090083 CACAAACCGACGGTTATTTAATGG 58.910 41.667 31.27 14.51 46.20 3.16
220 221 5.002516 ACAAACCGACGGTTATTTAATGGA 58.997 37.500 31.27 0.00 46.20 3.41
221 222 5.648960 ACAAACCGACGGTTATTTAATGGAT 59.351 36.000 31.27 9.96 46.20 3.41
222 223 5.744666 AACCGACGGTTATTTAATGGATG 57.255 39.130 30.22 0.00 44.94 3.51
223 224 5.026038 ACCGACGGTTATTTAATGGATGA 57.974 39.130 15.37 0.00 27.29 2.92
224 225 4.812626 ACCGACGGTTATTTAATGGATGAC 59.187 41.667 15.37 0.00 27.29 3.06
225 226 5.054477 CCGACGGTTATTTAATGGATGACT 58.946 41.667 5.48 0.00 0.00 3.41
226 227 5.176958 CCGACGGTTATTTAATGGATGACTC 59.823 44.000 5.48 0.00 0.00 3.36
227 228 5.751509 CGACGGTTATTTAATGGATGACTCA 59.248 40.000 0.00 0.00 0.00 3.41
228 229 6.256975 CGACGGTTATTTAATGGATGACTCAA 59.743 38.462 0.00 0.00 0.00 3.02
229 230 7.042051 CGACGGTTATTTAATGGATGACTCAAT 60.042 37.037 0.00 0.00 0.00 2.57
230 231 8.519799 ACGGTTATTTAATGGATGACTCAATT 57.480 30.769 0.00 0.00 0.00 2.32
231 232 8.966868 ACGGTTATTTAATGGATGACTCAATTT 58.033 29.630 0.00 0.00 0.00 1.82
232 233 9.236691 CGGTTATTTAATGGATGACTCAATTTG 57.763 33.333 0.00 0.00 0.00 2.32
233 234 9.034544 GGTTATTTAATGGATGACTCAATTTGC 57.965 33.333 0.00 0.00 0.00 3.68
234 235 8.745837 GTTATTTAATGGATGACTCAATTTGCG 58.254 33.333 0.00 0.00 0.00 4.85
235 236 3.788333 AATGGATGACTCAATTTGCGG 57.212 42.857 0.00 0.00 0.00 5.69
236 237 2.198827 TGGATGACTCAATTTGCGGT 57.801 45.000 0.00 0.00 0.00 5.68
237 238 3.342377 TGGATGACTCAATTTGCGGTA 57.658 42.857 0.00 0.00 0.00 4.02
238 239 3.884895 TGGATGACTCAATTTGCGGTAT 58.115 40.909 0.00 0.00 0.00 2.73
239 240 3.876914 TGGATGACTCAATTTGCGGTATC 59.123 43.478 0.00 0.00 0.00 2.24
240 241 4.130118 GGATGACTCAATTTGCGGTATCT 58.870 43.478 0.00 0.00 0.00 1.98
241 242 5.163353 TGGATGACTCAATTTGCGGTATCTA 60.163 40.000 0.00 0.00 0.00 1.98
242 243 5.934625 GGATGACTCAATTTGCGGTATCTAT 59.065 40.000 0.00 0.00 0.00 1.98
243 244 6.428159 GGATGACTCAATTTGCGGTATCTATT 59.572 38.462 0.00 0.00 0.00 1.73
244 245 7.602644 GGATGACTCAATTTGCGGTATCTATTA 59.397 37.037 0.00 0.00 0.00 0.98
245 246 7.946655 TGACTCAATTTGCGGTATCTATTAG 57.053 36.000 0.00 0.00 0.00 1.73
246 247 7.722363 TGACTCAATTTGCGGTATCTATTAGA 58.278 34.615 0.00 0.00 0.00 2.10
247 248 7.867909 TGACTCAATTTGCGGTATCTATTAGAG 59.132 37.037 0.00 0.00 0.00 2.43
248 249 7.952671 ACTCAATTTGCGGTATCTATTAGAGA 58.047 34.615 0.00 0.00 39.01 3.10
250 251 8.763049 TCAATTTGCGGTATCTATTAGAGATG 57.237 34.615 0.00 0.00 45.05 2.90
251 252 7.331934 TCAATTTGCGGTATCTATTAGAGATGC 59.668 37.037 0.00 0.00 45.05 3.91
252 253 5.984695 TTGCGGTATCTATTAGAGATGCT 57.015 39.130 13.28 0.00 45.05 3.79
253 254 5.568685 TGCGGTATCTATTAGAGATGCTC 57.431 43.478 13.28 0.00 45.05 4.26
254 255 5.257262 TGCGGTATCTATTAGAGATGCTCT 58.743 41.667 13.28 2.22 45.05 4.09
255 256 6.415573 TGCGGTATCTATTAGAGATGCTCTA 58.584 40.000 13.28 0.22 45.05 2.43
266 267 7.531857 TTAGAGATGCTCTAAGGGTAAGATG 57.468 40.000 11.70 0.00 44.85 2.90
267 268 5.463154 AGAGATGCTCTAAGGGTAAGATGT 58.537 41.667 0.00 0.00 39.28 3.06
268 269 6.615617 AGAGATGCTCTAAGGGTAAGATGTA 58.384 40.000 0.00 0.00 39.28 2.29
269 270 7.245292 AGAGATGCTCTAAGGGTAAGATGTAT 58.755 38.462 0.00 0.00 39.28 2.29
270 271 7.178274 AGAGATGCTCTAAGGGTAAGATGTATG 59.822 40.741 0.00 0.00 39.28 2.39
271 272 6.784969 AGATGCTCTAAGGGTAAGATGTATGT 59.215 38.462 0.00 0.00 0.00 2.29
272 273 6.161855 TGCTCTAAGGGTAAGATGTATGTG 57.838 41.667 0.00 0.00 0.00 3.21
273 274 5.897250 TGCTCTAAGGGTAAGATGTATGTGA 59.103 40.000 0.00 0.00 0.00 3.58
274 275 6.040955 TGCTCTAAGGGTAAGATGTATGTGAG 59.959 42.308 0.00 0.00 0.00 3.51
275 276 6.041069 GCTCTAAGGGTAAGATGTATGTGAGT 59.959 42.308 0.00 0.00 0.00 3.41
276 277 7.418025 GCTCTAAGGGTAAGATGTATGTGAGTT 60.418 40.741 0.00 0.00 0.00 3.01
277 278 9.132923 CTCTAAGGGTAAGATGTATGTGAGTTA 57.867 37.037 0.00 0.00 0.00 2.24
278 279 8.910944 TCTAAGGGTAAGATGTATGTGAGTTAC 58.089 37.037 0.00 0.00 0.00 2.50
279 280 6.481434 AGGGTAAGATGTATGTGAGTTACC 57.519 41.667 0.00 0.00 39.04 2.85
280 281 6.203072 AGGGTAAGATGTATGTGAGTTACCT 58.797 40.000 8.55 0.00 39.49 3.08
281 282 6.672657 AGGGTAAGATGTATGTGAGTTACCTT 59.327 38.462 8.55 0.00 39.49 3.50
282 283 7.182206 AGGGTAAGATGTATGTGAGTTACCTTT 59.818 37.037 8.55 0.00 39.49 3.11
283 284 7.494952 GGGTAAGATGTATGTGAGTTACCTTTC 59.505 40.741 8.55 0.00 39.49 2.62
284 285 8.038944 GGTAAGATGTATGTGAGTTACCTTTCA 58.961 37.037 0.00 0.00 37.49 2.69
285 286 9.431887 GTAAGATGTATGTGAGTTACCTTTCAA 57.568 33.333 0.00 0.00 0.00 2.69
286 287 8.918202 AAGATGTATGTGAGTTACCTTTCAAA 57.082 30.769 0.00 0.00 0.00 2.69
287 288 8.553459 AGATGTATGTGAGTTACCTTTCAAAG 57.447 34.615 0.00 0.00 0.00 2.77
288 289 8.375506 AGATGTATGTGAGTTACCTTTCAAAGA 58.624 33.333 0.00 0.00 0.00 2.52
289 290 7.724305 TGTATGTGAGTTACCTTTCAAAGAC 57.276 36.000 0.00 0.00 0.00 3.01
290 291 7.506114 TGTATGTGAGTTACCTTTCAAAGACT 58.494 34.615 0.00 0.00 0.00 3.24
291 292 8.644216 TGTATGTGAGTTACCTTTCAAAGACTA 58.356 33.333 0.00 0.00 0.00 2.59
292 293 9.141400 GTATGTGAGTTACCTTTCAAAGACTAG 57.859 37.037 0.00 0.00 0.00 2.57
293 294 7.356089 TGTGAGTTACCTTTCAAAGACTAGA 57.644 36.000 0.00 0.00 0.00 2.43
294 295 7.963532 TGTGAGTTACCTTTCAAAGACTAGAT 58.036 34.615 0.00 0.00 0.00 1.98
295 296 7.872993 TGTGAGTTACCTTTCAAAGACTAGATG 59.127 37.037 0.00 0.00 0.00 2.90
296 297 7.873505 GTGAGTTACCTTTCAAAGACTAGATGT 59.126 37.037 0.00 0.00 0.00 3.06
297 298 9.085645 TGAGTTACCTTTCAAAGACTAGATGTA 57.914 33.333 0.00 0.00 0.00 2.29
298 299 9.924650 GAGTTACCTTTCAAAGACTAGATGTAA 57.075 33.333 0.00 0.00 0.00 2.41
368 369 8.795786 TGAGAATGATAACTTTTTGGTTTTCG 57.204 30.769 0.00 0.00 32.52 3.46
386 387 2.298593 GGAAACGAGATGGCGCTAC 58.701 57.895 7.64 0.00 33.86 3.58
427 428 6.471198 GGTTTTAGTTGAATAGGCGTTATTGC 59.529 38.462 0.04 0.00 32.09 3.56
428 429 6.995511 TTTAGTTGAATAGGCGTTATTGCT 57.004 33.333 0.04 0.00 32.09 3.91
429 430 6.995511 TTAGTTGAATAGGCGTTATTGCTT 57.004 33.333 0.04 0.00 32.09 3.91
430 431 5.235305 AGTTGAATAGGCGTTATTGCTTG 57.765 39.130 0.04 0.00 32.09 4.01
480 481 1.855360 GAATTTCGCCGTGTTTGCAAA 59.145 42.857 8.05 8.05 0.00 3.68
483 484 0.992802 TTCGCCGTGTTTGCAAAAAC 59.007 45.000 20.63 20.63 0.00 2.43
485 486 0.995728 CGCCGTGTTTGCAAAAACTT 59.004 45.000 25.99 0.00 33.95 2.66
487 488 1.996191 GCCGTGTTTGCAAAAACTTCA 59.004 42.857 25.99 12.28 33.95 3.02
503 504 4.488126 ACTTCATCCGAATGTGTTTGTG 57.512 40.909 0.00 0.00 34.32 3.33
506 507 4.221926 TCATCCGAATGTGTTTGTGTTG 57.778 40.909 0.00 0.00 34.32 3.33
507 508 2.483583 TCCGAATGTGTTTGTGTTGC 57.516 45.000 0.00 0.00 0.00 4.17
509 510 1.119635 CGAATGTGTTTGTGTTGCGG 58.880 50.000 0.00 0.00 0.00 5.69
510 511 0.852136 GAATGTGTTTGTGTTGCGGC 59.148 50.000 0.00 0.00 0.00 6.53
513 514 3.893763 TGTTTGTGTTGCGGCCGG 61.894 61.111 29.38 8.95 0.00 6.13
515 516 3.587933 TTTGTGTTGCGGCCGGAC 61.588 61.111 29.38 18.97 0.00 4.79
521 522 1.747745 GTTGCGGCCGGACCTTTAT 60.748 57.895 29.38 0.00 35.61 1.40
523 524 2.186602 TTGCGGCCGGACCTTTATGA 62.187 55.000 29.38 2.58 35.61 2.15
534 535 4.501071 GGACCTTTATGACTAGCGTTGAA 58.499 43.478 0.00 0.00 0.00 2.69
538 539 5.581085 ACCTTTATGACTAGCGTTGAATGAC 59.419 40.000 0.00 0.00 0.00 3.06
539 540 5.006746 CCTTTATGACTAGCGTTGAATGACC 59.993 44.000 0.00 0.00 0.00 4.02
542 543 2.165641 TGACTAGCGTTGAATGACCGAT 59.834 45.455 0.00 0.00 0.00 4.18
545 546 1.369625 AGCGTTGAATGACCGATTCC 58.630 50.000 0.00 0.00 40.00 3.01
546 547 1.066143 AGCGTTGAATGACCGATTCCT 60.066 47.619 0.00 0.00 40.00 3.36
551 552 4.570772 CGTTGAATGACCGATTCCTGTTAT 59.429 41.667 0.00 0.00 40.00 1.89
552 553 5.064707 CGTTGAATGACCGATTCCTGTTATT 59.935 40.000 0.00 0.00 40.00 1.40
553 554 6.258160 GTTGAATGACCGATTCCTGTTATTG 58.742 40.000 0.00 0.00 40.00 1.90
560 561 4.261801 CCGATTCCTGTTATTGTTGTCCT 58.738 43.478 0.00 0.00 0.00 3.85
561 562 4.700213 CCGATTCCTGTTATTGTTGTCCTT 59.300 41.667 0.00 0.00 0.00 3.36
562 563 5.183140 CCGATTCCTGTTATTGTTGTCCTTT 59.817 40.000 0.00 0.00 0.00 3.11
563 564 6.294508 CCGATTCCTGTTATTGTTGTCCTTTT 60.295 38.462 0.00 0.00 0.00 2.27
564 565 7.145323 CGATTCCTGTTATTGTTGTCCTTTTT 58.855 34.615 0.00 0.00 0.00 1.94
565 566 8.293867 CGATTCCTGTTATTGTTGTCCTTTTTA 58.706 33.333 0.00 0.00 0.00 1.52
566 567 9.626045 GATTCCTGTTATTGTTGTCCTTTTTAG 57.374 33.333 0.00 0.00 0.00 1.85
598 623 5.748630 GTCGAAGATGACTGTATACAATGCA 59.251 40.000 7.06 5.81 40.67 3.96
599 624 5.748630 TCGAAGATGACTGTATACAATGCAC 59.251 40.000 7.06 0.00 0.00 4.57
606 631 5.576774 TGACTGTATACAATGCACGAAAGAG 59.423 40.000 7.06 0.00 0.00 2.85
611 636 1.873591 ACAATGCACGAAAGAGACACC 59.126 47.619 0.00 0.00 0.00 4.16
623 648 7.116948 CACGAAAGAGACACCCATATATCAATC 59.883 40.741 0.00 0.00 0.00 2.67
625 650 5.078411 AGAGACACCCATATATCAATCGC 57.922 43.478 0.00 0.00 0.00 4.58
627 652 5.952347 AGAGACACCCATATATCAATCGCTA 59.048 40.000 0.00 0.00 0.00 4.26
629 654 4.759782 ACACCCATATATCAATCGCTAGC 58.240 43.478 4.06 4.06 0.00 3.42
637 662 2.087501 TCAATCGCTAGCGGAAAACA 57.912 45.000 34.76 16.64 40.25 2.83
638 663 2.627945 TCAATCGCTAGCGGAAAACAT 58.372 42.857 34.76 18.20 40.25 2.71
647 672 5.462398 CGCTAGCGGAAAACATAGAAATACT 59.538 40.000 29.29 0.00 35.56 2.12
669 694 5.474876 ACTCTTTCCAAATTGTCCTAGCAAG 59.525 40.000 0.00 0.00 0.00 4.01
815 842 2.510238 GCAGACGCTCCTCGCATT 60.510 61.111 0.00 0.00 43.23 3.56
822 849 2.109799 CTCCTCGCATTCCCGCAT 59.890 61.111 0.00 0.00 0.00 4.73
1424 5604 1.279271 ACCACCACCAGATTAGAGTGC 59.721 52.381 0.00 0.00 0.00 4.40
1444 5624 1.005867 TAGGGTTCGTGGTCGTTGC 60.006 57.895 0.00 0.00 38.33 4.17
1499 5679 6.485830 TCTTCTGTAGGATCGAATGGAATT 57.514 37.500 0.00 0.00 40.93 2.17
1507 5692 6.152932 AGGATCGAATGGAATTGAAATTGG 57.847 37.500 0.00 0.00 36.07 3.16
1509 5694 6.040166 AGGATCGAATGGAATTGAAATTGGAG 59.960 38.462 0.00 0.00 36.07 3.86
1510 5695 4.997565 TCGAATGGAATTGAAATTGGAGC 58.002 39.130 0.00 0.00 36.07 4.70
1525 5710 6.515272 AATTGGAGCAGTTTATCGTTGAAT 57.485 33.333 0.00 0.00 0.00 2.57
1531 5716 6.325919 AGCAGTTTATCGTTGAATTTTGGA 57.674 33.333 0.00 0.00 0.00 3.53
1532 5717 6.381801 AGCAGTTTATCGTTGAATTTTGGAG 58.618 36.000 0.00 0.00 0.00 3.86
1535 5720 7.584987 CAGTTTATCGTTGAATTTTGGAGTCT 58.415 34.615 0.00 0.00 0.00 3.24
1536 5721 7.535258 CAGTTTATCGTTGAATTTTGGAGTCTG 59.465 37.037 0.00 0.00 0.00 3.51
1539 5724 4.204012 TCGTTGAATTTTGGAGTCTGGTT 58.796 39.130 0.00 0.00 0.00 3.67
1540 5725 4.274950 TCGTTGAATTTTGGAGTCTGGTTC 59.725 41.667 0.00 0.00 0.00 3.62
1542 5727 5.523369 GTTGAATTTTGGAGTCTGGTTCTG 58.477 41.667 0.00 0.00 0.00 3.02
1543 5728 4.792068 TGAATTTTGGAGTCTGGTTCTGT 58.208 39.130 0.00 0.00 0.00 3.41
1550 5735 3.390967 TGGAGTCTGGTTCTGTTGATTCA 59.609 43.478 0.00 0.00 0.00 2.57
1562 5747 7.645340 GGTTCTGTTGATTCATGATAAAATCGG 59.355 37.037 0.00 0.00 35.16 4.18
1596 5796 1.425448 CTGATTCCCCATTCTACCCCC 59.575 57.143 0.00 0.00 0.00 5.40
1612 5814 1.270785 CCCCCAAATCTGTTTGTTGGC 60.271 52.381 0.00 0.00 42.50 4.52
1635 5880 0.390735 GTCCCTGTACGAACCGCATT 60.391 55.000 0.00 0.00 0.00 3.56
1636 5881 0.322322 TCCCTGTACGAACCGCATTT 59.678 50.000 0.00 0.00 0.00 2.32
1650 5895 6.628856 CGAACCGCATTTATCTTAATCAAGTG 59.371 38.462 0.00 0.00 33.20 3.16
1671 5916 2.284417 GCCAAATCCGTCGAGTGATAAC 59.716 50.000 0.00 0.00 0.00 1.89
1852 6276 2.185350 CGGAATCGCACCTCTGCT 59.815 61.111 0.00 0.00 41.77 4.24
1866 6290 1.538950 CTCTGCTTCCAACCTGCTTTC 59.461 52.381 0.00 0.00 0.00 2.62
1919 6345 3.743521 TCTGCTTTGCTGACTGTTGTAT 58.256 40.909 0.00 0.00 31.90 2.29
1922 6348 4.609947 TGCTTTGCTGACTGTTGTATTTG 58.390 39.130 0.00 0.00 0.00 2.32
1988 6424 5.449588 CGCATTAGAATGTGCTCTTCCAATT 60.450 40.000 3.04 0.00 39.69 2.32
2003 6441 5.412594 TCTTCCAATTGAATCGAGTTCCAAG 59.587 40.000 7.12 0.00 35.91 3.61
2005 6443 4.455533 TCCAATTGAATCGAGTTCCAAGTG 59.544 41.667 7.12 7.50 35.91 3.16
2007 6445 5.048782 CCAATTGAATCGAGTTCCAAGTGAA 60.049 40.000 13.88 0.00 35.91 3.18
2009 6447 5.862924 TTGAATCGAGTTCCAAGTGAATC 57.137 39.130 0.00 0.00 35.91 2.52
2011 6449 4.931601 TGAATCGAGTTCCAAGTGAATCAG 59.068 41.667 0.00 0.00 35.91 2.90
2014 6452 5.914898 TCGAGTTCCAAGTGAATCAGATA 57.085 39.130 0.00 0.00 34.90 1.98
2019 6457 5.046014 AGTTCCAAGTGAATCAGATACTGCT 60.046 40.000 0.00 0.00 34.90 4.24
2021 6459 4.713814 TCCAAGTGAATCAGATACTGCTCT 59.286 41.667 0.00 0.00 0.00 4.09
2023 6461 5.523188 CCAAGTGAATCAGATACTGCTCTTC 59.477 44.000 0.00 0.00 0.00 2.87
2024 6462 5.275067 AGTGAATCAGATACTGCTCTTCC 57.725 43.478 0.00 0.00 0.00 3.46
2025 6463 4.100808 AGTGAATCAGATACTGCTCTTCCC 59.899 45.833 0.00 0.00 0.00 3.97
2076 6564 4.205587 AGCTGACCCTGATCATTTGAATC 58.794 43.478 0.00 0.00 0.00 2.52
2081 6569 4.785301 ACCCTGATCATTTGAATCGTGAT 58.215 39.130 0.00 0.00 35.42 3.06
2083 6571 4.023450 CCCTGATCATTTGAATCGTGATGG 60.023 45.833 0.00 0.00 33.03 3.51
2092 6606 0.548031 AATCGTGATGGCTCATGGGT 59.452 50.000 0.00 0.00 38.67 4.51
2093 6607 0.107456 ATCGTGATGGCTCATGGGTC 59.893 55.000 0.00 0.00 38.67 4.46
2098 6612 0.254178 GATGGCTCATGGGTCACAGT 59.746 55.000 0.00 0.00 0.00 3.55
2140 6654 9.981460 AAATTAGATTTTGACTTACCTGATCCT 57.019 29.630 0.00 0.00 0.00 3.24
2145 6659 8.606830 AGATTTTGACTTACCTGATCCTACTTT 58.393 33.333 0.00 0.00 0.00 2.66
2287 6802 3.930336 TCTGGTCTGTGCTTCATGTTAG 58.070 45.455 0.00 0.00 0.00 2.34
2322 6838 0.670546 GGCTACTGCTTGTTCGCTGA 60.671 55.000 0.00 0.00 39.59 4.26
2325 6841 2.032030 GCTACTGCTTGTTCGCTGAAAA 60.032 45.455 0.00 0.00 36.03 2.29
2352 6868 4.537945 TGGGTAGCTCCTAGTCTACATT 57.462 45.455 12.91 0.00 37.49 2.71
2445 6961 1.967319 TGTGTGTTCTTCCTTCTGCC 58.033 50.000 0.00 0.00 0.00 4.85
2520 7036 7.637229 GTTGAAAACTGTTACTCCCTAAGTTC 58.363 38.462 0.00 0.00 45.32 3.01
2521 7037 6.293698 TGAAAACTGTTACTCCCTAAGTTCC 58.706 40.000 0.00 0.00 39.55 3.62
2523 7039 5.899631 AACTGTTACTCCCTAAGTTCCAA 57.100 39.130 0.00 0.00 39.55 3.53
2524 7040 5.899631 ACTGTTACTCCCTAAGTTCCAAA 57.100 39.130 0.00 0.00 39.55 3.28
2526 7042 6.849151 ACTGTTACTCCCTAAGTTCCAAAAT 58.151 36.000 0.00 0.00 39.55 1.82
2529 7045 8.857694 TGTTACTCCCTAAGTTCCAAAATAAG 57.142 34.615 0.00 0.00 39.55 1.73
2530 7046 8.442374 TGTTACTCCCTAAGTTCCAAAATAAGT 58.558 33.333 0.00 0.00 39.55 2.24
2531 7047 8.727910 GTTACTCCCTAAGTTCCAAAATAAGTG 58.272 37.037 0.00 0.00 39.55 3.16
2532 7048 6.849151 ACTCCCTAAGTTCCAAAATAAGTGT 58.151 36.000 0.00 0.00 33.03 3.55
2533 7049 6.940867 ACTCCCTAAGTTCCAAAATAAGTGTC 59.059 38.462 0.00 0.00 33.03 3.67
2534 7050 5.935789 TCCCTAAGTTCCAAAATAAGTGTCG 59.064 40.000 0.00 0.00 0.00 4.35
2535 7051 5.704053 CCCTAAGTTCCAAAATAAGTGTCGT 59.296 40.000 0.00 0.00 0.00 4.34
2536 7052 6.348213 CCCTAAGTTCCAAAATAAGTGTCGTG 60.348 42.308 0.00 0.00 0.00 4.35
2537 7053 5.432885 AAGTTCCAAAATAAGTGTCGTGG 57.567 39.130 0.00 0.00 0.00 4.94
2540 7056 5.358725 AGTTCCAAAATAAGTGTCGTGGTTT 59.641 36.000 0.00 0.00 0.00 3.27
2542 7058 6.939132 TCCAAAATAAGTGTCGTGGTTTTA 57.061 33.333 0.00 0.00 0.00 1.52
2543 7059 6.961576 TCCAAAATAAGTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 0.00 1.85
2545 7061 7.067251 TCCAAAATAAGTGTCGTGGTTTTAGTT 59.933 33.333 0.00 0.00 0.00 2.24
2546 7062 7.377662 CCAAAATAAGTGTCGTGGTTTTAGTTC 59.622 37.037 0.00 0.00 0.00 3.01
2561 7081 6.534436 GGTTTTAGTTCGAGGGAGTATTTCTC 59.466 42.308 0.00 0.00 42.07 2.87
2573 7093 8.392372 AGGGAGTATTTCTCAACAAAGTAAAC 57.608 34.615 0.00 0.00 44.40 2.01
2574 7094 7.996644 AGGGAGTATTTCTCAACAAAGTAAACA 59.003 33.333 0.00 0.00 44.40 2.83
2604 7124 5.192927 TCTTTGGCTCATAATGGAACGAAT 58.807 37.500 0.00 0.00 0.00 3.34
2627 7148 2.481276 GCAAAGGTCCTTGCGTTTTCTT 60.481 45.455 4.45 0.00 42.09 2.52
2634 7155 4.267690 GGTCCTTGCGTTTTCTTGAAAAAG 59.732 41.667 14.30 14.30 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.507324 GCTTCCACTCTCCGTCGC 60.507 66.667 0.00 0.00 0.00 5.19
3 4 0.603569 TCTTGCTTCCACTCTCCGTC 59.396 55.000 0.00 0.00 0.00 4.79
4 5 1.048601 TTCTTGCTTCCACTCTCCGT 58.951 50.000 0.00 0.00 0.00 4.69
5 6 1.801178 GTTTCTTGCTTCCACTCTCCG 59.199 52.381 0.00 0.00 0.00 4.63
6 7 2.810852 CTGTTTCTTGCTTCCACTCTCC 59.189 50.000 0.00 0.00 0.00 3.71
7 8 3.733337 TCTGTTTCTTGCTTCCACTCTC 58.267 45.455 0.00 0.00 0.00 3.20
8 9 3.845781 TCTGTTTCTTGCTTCCACTCT 57.154 42.857 0.00 0.00 0.00 3.24
9 10 3.304324 GCTTCTGTTTCTTGCTTCCACTC 60.304 47.826 0.00 0.00 0.00 3.51
10 11 2.620585 GCTTCTGTTTCTTGCTTCCACT 59.379 45.455 0.00 0.00 0.00 4.00
11 12 2.603173 CGCTTCTGTTTCTTGCTTCCAC 60.603 50.000 0.00 0.00 0.00 4.02
12 13 1.603802 CGCTTCTGTTTCTTGCTTCCA 59.396 47.619 0.00 0.00 0.00 3.53
13 14 1.068954 CCGCTTCTGTTTCTTGCTTCC 60.069 52.381 0.00 0.00 0.00 3.46
14 15 1.873591 TCCGCTTCTGTTTCTTGCTTC 59.126 47.619 0.00 0.00 0.00 3.86
15 16 1.604278 GTCCGCTTCTGTTTCTTGCTT 59.396 47.619 0.00 0.00 0.00 3.91
16 17 1.230324 GTCCGCTTCTGTTTCTTGCT 58.770 50.000 0.00 0.00 0.00 3.91
17 18 0.238553 GGTCCGCTTCTGTTTCTTGC 59.761 55.000 0.00 0.00 0.00 4.01
18 19 0.512952 CGGTCCGCTTCTGTTTCTTG 59.487 55.000 0.00 0.00 0.00 3.02
19 20 0.391597 TCGGTCCGCTTCTGTTTCTT 59.608 50.000 6.34 0.00 0.00 2.52
20 21 0.391597 TTCGGTCCGCTTCTGTTTCT 59.608 50.000 6.34 0.00 0.00 2.52
21 22 1.223187 TTTCGGTCCGCTTCTGTTTC 58.777 50.000 6.34 0.00 0.00 2.78
22 23 1.535462 CATTTCGGTCCGCTTCTGTTT 59.465 47.619 6.34 0.00 0.00 2.83
23 24 1.156736 CATTTCGGTCCGCTTCTGTT 58.843 50.000 6.34 0.00 0.00 3.16
24 25 0.673644 CCATTTCGGTCCGCTTCTGT 60.674 55.000 6.34 0.00 0.00 3.41
25 26 2.089854 CCATTTCGGTCCGCTTCTG 58.910 57.895 6.34 1.32 0.00 3.02
26 27 4.617875 CCATTTCGGTCCGCTTCT 57.382 55.556 6.34 0.00 0.00 2.85
35 36 2.352617 CCATTGGTGTGAACCATTTCGG 60.353 50.000 0.00 0.00 39.86 4.30
36 37 2.556189 TCCATTGGTGTGAACCATTTCG 59.444 45.455 1.86 0.00 39.86 3.46
37 38 4.599047 TTCCATTGGTGTGAACCATTTC 57.401 40.909 1.86 0.00 39.86 2.17
38 39 4.202346 CCTTTCCATTGGTGTGAACCATTT 60.202 41.667 1.86 0.00 39.86 2.32
39 40 3.324556 CCTTTCCATTGGTGTGAACCATT 59.675 43.478 1.86 0.00 39.86 3.16
40 41 2.899256 CCTTTCCATTGGTGTGAACCAT 59.101 45.455 1.86 0.00 39.86 3.55
41 42 2.315176 CCTTTCCATTGGTGTGAACCA 58.685 47.619 1.86 0.00 38.14 3.67
42 43 1.618343 CCCTTTCCATTGGTGTGAACC 59.382 52.381 1.86 0.00 0.00 3.62
43 44 1.618343 CCCCTTTCCATTGGTGTGAAC 59.382 52.381 1.86 0.00 0.00 3.18
44 45 1.501170 TCCCCTTTCCATTGGTGTGAA 59.499 47.619 1.86 0.00 0.00 3.18
45 46 1.075374 CTCCCCTTTCCATTGGTGTGA 59.925 52.381 1.86 0.00 0.00 3.58
46 47 1.549203 CTCCCCTTTCCATTGGTGTG 58.451 55.000 1.86 0.00 0.00 3.82
47 48 0.251787 GCTCCCCTTTCCATTGGTGT 60.252 55.000 1.86 0.00 0.00 4.16
48 49 0.972471 GGCTCCCCTTTCCATTGGTG 60.972 60.000 1.86 0.00 0.00 4.17
49 50 1.149133 AGGCTCCCCTTTCCATTGGT 61.149 55.000 1.86 0.00 38.74 3.67
50 51 0.685458 CAGGCTCCCCTTTCCATTGG 60.685 60.000 0.00 0.00 40.33 3.16
51 52 1.325476 GCAGGCTCCCCTTTCCATTG 61.325 60.000 0.00 0.00 40.33 2.82
52 53 1.000866 GCAGGCTCCCCTTTCCATT 59.999 57.895 0.00 0.00 40.33 3.16
53 54 1.803453 TTGCAGGCTCCCCTTTCCAT 61.803 55.000 0.00 0.00 40.33 3.41
54 55 2.017668 TTTGCAGGCTCCCCTTTCCA 62.018 55.000 0.00 0.00 40.33 3.53
55 56 0.831711 TTTTGCAGGCTCCCCTTTCC 60.832 55.000 0.00 0.00 40.33 3.13
56 57 1.205655 GATTTTGCAGGCTCCCCTTTC 59.794 52.381 0.00 0.00 40.33 2.62
57 58 1.269958 GATTTTGCAGGCTCCCCTTT 58.730 50.000 0.00 0.00 40.33 3.11
58 59 0.967380 CGATTTTGCAGGCTCCCCTT 60.967 55.000 0.00 0.00 40.33 3.95
59 60 1.379044 CGATTTTGCAGGCTCCCCT 60.379 57.895 0.00 0.00 44.25 4.79
60 61 1.378514 TCGATTTTGCAGGCTCCCC 60.379 57.895 0.00 0.00 0.00 4.81
61 62 0.678048 ACTCGATTTTGCAGGCTCCC 60.678 55.000 0.00 0.00 0.00 4.30
62 63 0.449388 CACTCGATTTTGCAGGCTCC 59.551 55.000 0.00 0.00 0.00 4.70
63 64 0.449388 CCACTCGATTTTGCAGGCTC 59.551 55.000 0.00 0.00 0.00 4.70
64 65 0.036732 TCCACTCGATTTTGCAGGCT 59.963 50.000 0.00 0.00 0.00 4.58
65 66 1.098050 ATCCACTCGATTTTGCAGGC 58.902 50.000 0.00 0.00 0.00 4.85
66 67 3.065371 GGTAATCCACTCGATTTTGCAGG 59.935 47.826 0.00 0.00 41.58 4.85
67 68 3.242413 CGGTAATCCACTCGATTTTGCAG 60.242 47.826 0.00 0.00 41.58 4.41
68 69 2.675844 CGGTAATCCACTCGATTTTGCA 59.324 45.455 0.00 0.00 41.58 4.08
69 70 2.538939 GCGGTAATCCACTCGATTTTGC 60.539 50.000 0.00 0.00 41.58 3.68
70 71 2.675844 TGCGGTAATCCACTCGATTTTG 59.324 45.455 0.00 0.00 41.58 2.44
71 72 2.676342 GTGCGGTAATCCACTCGATTTT 59.324 45.455 0.00 0.00 41.58 1.82
72 73 2.277084 GTGCGGTAATCCACTCGATTT 58.723 47.619 0.00 0.00 41.58 2.17
73 74 1.206132 TGTGCGGTAATCCACTCGATT 59.794 47.619 0.00 0.00 43.79 3.34
74 75 0.821517 TGTGCGGTAATCCACTCGAT 59.178 50.000 0.00 0.00 33.26 3.59
75 76 0.108992 GTGTGCGGTAATCCACTCGA 60.109 55.000 0.00 0.00 33.26 4.04
76 77 0.389296 TGTGTGCGGTAATCCACTCG 60.389 55.000 0.00 0.00 33.26 4.18
77 78 1.665679 CATGTGTGCGGTAATCCACTC 59.334 52.381 0.00 0.00 33.26 3.51
78 79 1.678728 CCATGTGTGCGGTAATCCACT 60.679 52.381 0.00 0.00 33.26 4.00
79 80 0.732571 CCATGTGTGCGGTAATCCAC 59.267 55.000 0.00 0.00 0.00 4.02
80 81 0.615850 TCCATGTGTGCGGTAATCCA 59.384 50.000 0.00 0.00 0.00 3.41
81 82 1.299541 CTCCATGTGTGCGGTAATCC 58.700 55.000 0.00 0.00 0.00 3.01
82 83 1.134521 TCCTCCATGTGTGCGGTAATC 60.135 52.381 0.00 0.00 0.00 1.75
83 84 0.908910 TCCTCCATGTGTGCGGTAAT 59.091 50.000 0.00 0.00 0.00 1.89
84 85 0.687920 TTCCTCCATGTGTGCGGTAA 59.312 50.000 0.00 0.00 0.00 2.85
85 86 0.687920 TTTCCTCCATGTGTGCGGTA 59.312 50.000 0.00 0.00 0.00 4.02
86 87 0.038166 ATTTCCTCCATGTGTGCGGT 59.962 50.000 0.00 0.00 0.00 5.68
87 88 0.452987 CATTTCCTCCATGTGTGCGG 59.547 55.000 0.00 0.00 0.00 5.69
88 89 0.452987 CCATTTCCTCCATGTGTGCG 59.547 55.000 0.00 0.00 0.00 5.34
89 90 0.819582 CCCATTTCCTCCATGTGTGC 59.180 55.000 0.00 0.00 0.00 4.57
90 91 0.819582 GCCCATTTCCTCCATGTGTG 59.180 55.000 0.00 0.00 0.00 3.82
91 92 0.706433 AGCCCATTTCCTCCATGTGT 59.294 50.000 0.00 0.00 0.00 3.72
92 93 1.396653 GAGCCCATTTCCTCCATGTG 58.603 55.000 0.00 0.00 0.00 3.21
93 94 0.107017 CGAGCCCATTTCCTCCATGT 60.107 55.000 0.00 0.00 0.00 3.21
94 95 1.450531 GCGAGCCCATTTCCTCCATG 61.451 60.000 0.00 0.00 0.00 3.66
95 96 1.152881 GCGAGCCCATTTCCTCCAT 60.153 57.895 0.00 0.00 0.00 3.41
96 97 2.272146 GCGAGCCCATTTCCTCCA 59.728 61.111 0.00 0.00 0.00 3.86
97 98 2.897350 CGCGAGCCCATTTCCTCC 60.897 66.667 0.00 0.00 0.00 4.30
98 99 2.666596 ATCCGCGAGCCCATTTCCTC 62.667 60.000 8.23 0.00 0.00 3.71
99 100 2.746375 ATCCGCGAGCCCATTTCCT 61.746 57.895 8.23 0.00 0.00 3.36
100 101 2.203209 ATCCGCGAGCCCATTTCC 60.203 61.111 8.23 0.00 0.00 3.13
101 102 3.025619 CATCCGCGAGCCCATTTC 58.974 61.111 8.23 0.00 0.00 2.17
102 103 3.211963 GCATCCGCGAGCCCATTT 61.212 61.111 8.23 0.00 0.00 2.32
113 114 4.854924 TGTGGCATCCCGCATCCG 62.855 66.667 0.00 0.00 46.32 4.18
136 137 3.978460 GGGTTGTCCGTGCATTTTT 57.022 47.368 0.00 0.00 33.83 1.94
154 155 1.561730 CGAGCAGATCCGCAAATCG 59.438 57.895 3.28 0.15 38.08 3.34
155 156 1.502163 CCCGAGCAGATCCGCAAATC 61.502 60.000 3.28 0.00 0.00 2.17
156 157 1.524621 CCCGAGCAGATCCGCAAAT 60.525 57.895 3.28 0.00 0.00 2.32
157 158 2.125147 CCCGAGCAGATCCGCAAA 60.125 61.111 3.28 0.00 0.00 3.68
158 159 4.838152 GCCCGAGCAGATCCGCAA 62.838 66.667 3.28 0.00 39.53 4.85
162 163 4.292178 CTCGGCCCGAGCAGATCC 62.292 72.222 21.84 0.00 46.75 3.36
170 171 2.367586 ATCCTGTATCCTCGGCCCGA 62.368 60.000 5.37 5.37 0.00 5.14
171 172 0.611062 TATCCTGTATCCTCGGCCCG 60.611 60.000 0.00 0.00 0.00 6.13
172 173 1.187087 CTATCCTGTATCCTCGGCCC 58.813 60.000 0.00 0.00 0.00 5.80
173 174 2.217510 TCTATCCTGTATCCTCGGCC 57.782 55.000 0.00 0.00 0.00 6.13
174 175 2.691011 GGATCTATCCTGTATCCTCGGC 59.309 54.545 1.52 0.00 43.73 5.54
175 176 3.292460 GGGATCTATCCTGTATCCTCGG 58.708 54.545 8.85 0.00 46.35 4.63
176 177 3.697045 GTGGGATCTATCCTGTATCCTCG 59.303 52.174 8.85 0.00 46.35 4.63
177 178 4.678256 TGTGGGATCTATCCTGTATCCTC 58.322 47.826 8.85 0.00 46.35 3.71
178 179 4.767000 TGTGGGATCTATCCTGTATCCT 57.233 45.455 8.85 0.00 46.35 3.24
179 180 5.513267 GGTTTGTGGGATCTATCCTGTATCC 60.513 48.000 8.85 0.00 46.35 2.59
180 181 5.552178 GGTTTGTGGGATCTATCCTGTATC 58.448 45.833 8.85 0.00 46.35 2.24
181 182 4.040461 CGGTTTGTGGGATCTATCCTGTAT 59.960 45.833 8.85 0.00 46.35 2.29
182 183 3.386726 CGGTTTGTGGGATCTATCCTGTA 59.613 47.826 8.85 0.00 46.35 2.74
183 184 2.170607 CGGTTTGTGGGATCTATCCTGT 59.829 50.000 8.85 0.00 46.35 4.00
184 185 2.434336 TCGGTTTGTGGGATCTATCCTG 59.566 50.000 8.85 0.00 46.35 3.86
185 186 2.434702 GTCGGTTTGTGGGATCTATCCT 59.565 50.000 8.85 0.00 46.35 3.24
186 187 2.802057 CGTCGGTTTGTGGGATCTATCC 60.802 54.545 0.00 0.00 46.41 2.59
187 188 2.470821 CGTCGGTTTGTGGGATCTATC 58.529 52.381 0.00 0.00 0.00 2.08
188 189 1.138266 CCGTCGGTTTGTGGGATCTAT 59.862 52.381 2.08 0.00 0.00 1.98
189 190 0.533491 CCGTCGGTTTGTGGGATCTA 59.467 55.000 2.08 0.00 0.00 1.98
190 191 1.295423 CCGTCGGTTTGTGGGATCT 59.705 57.895 2.08 0.00 0.00 2.75
191 192 0.604511 AACCGTCGGTTTGTGGGATC 60.605 55.000 23.96 0.00 44.33 3.36
192 193 0.686224 TAACCGTCGGTTTGTGGGAT 59.314 50.000 33.02 10.52 44.33 3.85
193 194 0.686224 ATAACCGTCGGTTTGTGGGA 59.314 50.000 33.02 15.71 44.33 4.37
194 195 1.525941 AATAACCGTCGGTTTGTGGG 58.474 50.000 33.02 0.00 44.33 4.61
195 196 4.745837 TTAAATAACCGTCGGTTTGTGG 57.254 40.909 33.02 0.00 44.33 4.17
196 197 5.090083 CCATTAAATAACCGTCGGTTTGTG 58.910 41.667 33.02 20.37 44.33 3.33
197 198 5.002516 TCCATTAAATAACCGTCGGTTTGT 58.997 37.500 33.02 19.81 44.33 2.83
198 199 5.548706 TCCATTAAATAACCGTCGGTTTG 57.451 39.130 33.02 22.78 44.33 2.93
199 200 5.881443 TCATCCATTAAATAACCGTCGGTTT 59.119 36.000 33.02 18.75 44.33 3.27
201 202 4.812626 GTCATCCATTAAATAACCGTCGGT 59.187 41.667 12.23 12.23 37.65 4.69
202 203 5.054477 AGTCATCCATTAAATAACCGTCGG 58.946 41.667 10.48 10.48 0.00 4.79
203 204 5.751509 TGAGTCATCCATTAAATAACCGTCG 59.248 40.000 0.00 0.00 0.00 5.12
204 205 7.548196 TTGAGTCATCCATTAAATAACCGTC 57.452 36.000 0.00 0.00 0.00 4.79
205 206 8.519799 AATTGAGTCATCCATTAAATAACCGT 57.480 30.769 0.00 0.00 0.00 4.83
206 207 9.236691 CAAATTGAGTCATCCATTAAATAACCG 57.763 33.333 0.00 0.00 0.00 4.44
207 208 9.034544 GCAAATTGAGTCATCCATTAAATAACC 57.965 33.333 0.00 0.00 0.00 2.85
208 209 8.745837 CGCAAATTGAGTCATCCATTAAATAAC 58.254 33.333 0.00 0.00 0.00 1.89
209 210 7.920151 CCGCAAATTGAGTCATCCATTAAATAA 59.080 33.333 0.00 0.00 0.00 1.40
210 211 7.068103 ACCGCAAATTGAGTCATCCATTAAATA 59.932 33.333 0.00 0.00 0.00 1.40
211 212 6.127366 ACCGCAAATTGAGTCATCCATTAAAT 60.127 34.615 0.00 0.00 0.00 1.40
212 213 5.184864 ACCGCAAATTGAGTCATCCATTAAA 59.815 36.000 0.00 0.00 0.00 1.52
213 214 4.704540 ACCGCAAATTGAGTCATCCATTAA 59.295 37.500 0.00 0.00 0.00 1.40
214 215 4.269183 ACCGCAAATTGAGTCATCCATTA 58.731 39.130 0.00 0.00 0.00 1.90
215 216 3.091545 ACCGCAAATTGAGTCATCCATT 58.908 40.909 0.00 0.00 0.00 3.16
216 217 2.726821 ACCGCAAATTGAGTCATCCAT 58.273 42.857 0.00 0.00 0.00 3.41
217 218 2.198827 ACCGCAAATTGAGTCATCCA 57.801 45.000 0.00 0.00 0.00 3.41
218 219 4.130118 AGATACCGCAAATTGAGTCATCC 58.870 43.478 0.00 0.00 0.00 3.51
219 220 7.426929 AATAGATACCGCAAATTGAGTCATC 57.573 36.000 0.00 0.00 0.00 2.92
220 221 8.367911 TCTAATAGATACCGCAAATTGAGTCAT 58.632 33.333 0.00 0.00 0.00 3.06
221 222 7.722363 TCTAATAGATACCGCAAATTGAGTCA 58.278 34.615 0.00 0.00 0.00 3.41
222 223 8.082852 TCTCTAATAGATACCGCAAATTGAGTC 58.917 37.037 0.00 0.00 0.00 3.36
223 224 7.952671 TCTCTAATAGATACCGCAAATTGAGT 58.047 34.615 0.00 0.00 0.00 3.41
224 225 8.867935 CATCTCTAATAGATACCGCAAATTGAG 58.132 37.037 0.00 0.00 43.42 3.02
225 226 7.331934 GCATCTCTAATAGATACCGCAAATTGA 59.668 37.037 0.00 0.00 43.42 2.57
226 227 7.332926 AGCATCTCTAATAGATACCGCAAATTG 59.667 37.037 0.00 0.00 43.42 2.32
227 228 7.390027 AGCATCTCTAATAGATACCGCAAATT 58.610 34.615 0.00 0.00 43.42 1.82
228 229 6.940739 AGCATCTCTAATAGATACCGCAAAT 58.059 36.000 0.00 0.00 43.42 2.32
229 230 6.346477 AGCATCTCTAATAGATACCGCAAA 57.654 37.500 0.00 0.00 43.42 3.68
230 231 5.955488 GAGCATCTCTAATAGATACCGCAA 58.045 41.667 0.00 0.00 43.42 4.85
231 232 5.568685 GAGCATCTCTAATAGATACCGCA 57.431 43.478 0.00 0.00 43.42 5.69
247 248 6.870965 CACATACATCTTACCCTTAGAGCATC 59.129 42.308 0.00 0.00 0.00 3.91
248 249 6.554982 TCACATACATCTTACCCTTAGAGCAT 59.445 38.462 0.00 0.00 0.00 3.79
249 250 5.897250 TCACATACATCTTACCCTTAGAGCA 59.103 40.000 0.00 0.00 0.00 4.26
250 251 6.041069 ACTCACATACATCTTACCCTTAGAGC 59.959 42.308 0.00 0.00 0.00 4.09
251 252 7.589958 ACTCACATACATCTTACCCTTAGAG 57.410 40.000 0.00 0.00 0.00 2.43
252 253 7.973048 AACTCACATACATCTTACCCTTAGA 57.027 36.000 0.00 0.00 0.00 2.10
253 254 8.142551 GGTAACTCACATACATCTTACCCTTAG 58.857 40.741 0.00 0.00 30.90 2.18
254 255 8.015185 GGTAACTCACATACATCTTACCCTTA 57.985 38.462 0.00 0.00 30.90 2.69
255 256 6.885922 GGTAACTCACATACATCTTACCCTT 58.114 40.000 0.00 0.00 30.90 3.95
256 257 6.481434 GGTAACTCACATACATCTTACCCT 57.519 41.667 0.00 0.00 30.90 4.34
277 278 9.965902 ATTGATTACATCTAGTCTTTGAAAGGT 57.034 29.630 4.94 0.00 0.00 3.50
336 337 9.219603 CCAAAAAGTTATCATTCTCAGACAGTA 57.780 33.333 0.00 0.00 0.00 2.74
337 338 7.721399 ACCAAAAAGTTATCATTCTCAGACAGT 59.279 33.333 0.00 0.00 0.00 3.55
338 339 8.103948 ACCAAAAAGTTATCATTCTCAGACAG 57.896 34.615 0.00 0.00 0.00 3.51
339 340 8.463930 AACCAAAAAGTTATCATTCTCAGACA 57.536 30.769 0.00 0.00 0.00 3.41
340 341 9.750125 AAAACCAAAAAGTTATCATTCTCAGAC 57.250 29.630 0.00 0.00 0.00 3.51
341 342 9.965824 GAAAACCAAAAAGTTATCATTCTCAGA 57.034 29.630 0.00 0.00 0.00 3.27
342 343 8.905702 CGAAAACCAAAAAGTTATCATTCTCAG 58.094 33.333 0.00 0.00 0.00 3.35
343 344 7.865385 CCGAAAACCAAAAAGTTATCATTCTCA 59.135 33.333 0.00 0.00 0.00 3.27
352 353 5.947443 TCGTTTCCGAAAACCAAAAAGTTA 58.053 33.333 0.00 0.00 41.46 2.24
354 355 4.156373 TCTCGTTTCCGAAAACCAAAAAGT 59.844 37.500 0.00 0.00 43.69 2.66
356 357 4.698583 TCTCGTTTCCGAAAACCAAAAA 57.301 36.364 0.00 0.00 43.69 1.94
357 358 4.498345 CCATCTCGTTTCCGAAAACCAAAA 60.498 41.667 0.00 0.00 43.69 2.44
368 369 0.179108 AGTAGCGCCATCTCGTTTCC 60.179 55.000 2.29 0.00 0.00 3.13
415 416 6.503589 ACATAAAACAAGCAATAACGCCTA 57.496 33.333 0.00 0.00 0.00 3.93
416 417 5.385509 ACATAAAACAAGCAATAACGCCT 57.614 34.783 0.00 0.00 0.00 5.52
448 449 5.570973 CACGGCGAAATTCATTTGAATACAA 59.429 36.000 16.62 0.00 43.41 2.41
449 450 5.092105 CACGGCGAAATTCATTTGAATACA 58.908 37.500 16.62 0.00 43.41 2.29
451 452 5.303747 ACACGGCGAAATTCATTTGAATA 57.696 34.783 16.62 0.00 43.41 1.75
453 454 3.634568 ACACGGCGAAATTCATTTGAA 57.365 38.095 16.62 0.00 38.56 2.69
466 467 0.995728 AAGTTTTTGCAAACACGGCG 59.004 45.000 19.73 4.80 44.32 6.46
468 469 3.245048 GGATGAAGTTTTTGCAAACACGG 59.755 43.478 19.73 0.00 44.32 4.94
480 481 5.163561 ACACAAACACATTCGGATGAAGTTT 60.164 36.000 19.32 19.32 41.23 2.66
483 484 4.488126 ACACAAACACATTCGGATGAAG 57.512 40.909 11.64 5.00 37.57 3.02
485 486 3.549827 GCAACACAAACACATTCGGATGA 60.550 43.478 11.64 0.00 36.73 2.92
487 488 2.604373 CGCAACACAAACACATTCGGAT 60.604 45.455 0.00 0.00 0.00 4.18
503 504 1.747745 ATAAAGGTCCGGCCGCAAC 60.748 57.895 22.85 19.77 43.70 4.17
506 507 2.178235 GTCATAAAGGTCCGGCCGC 61.178 63.158 22.85 6.98 43.70 6.53
507 508 0.748450 TAGTCATAAAGGTCCGGCCG 59.252 55.000 21.04 21.04 43.70 6.13
509 510 1.867166 GCTAGTCATAAAGGTCCGGC 58.133 55.000 0.00 0.00 0.00 6.13
510 511 1.407979 ACGCTAGTCATAAAGGTCCGG 59.592 52.381 0.00 0.00 0.00 5.14
513 514 5.810587 TCATTCAACGCTAGTCATAAAGGTC 59.189 40.000 0.00 0.00 0.00 3.85
515 516 5.006746 GGTCATTCAACGCTAGTCATAAAGG 59.993 44.000 0.00 0.00 0.00 3.11
516 517 5.276395 CGGTCATTCAACGCTAGTCATAAAG 60.276 44.000 0.00 0.00 0.00 1.85
521 522 1.542472 TCGGTCATTCAACGCTAGTCA 59.458 47.619 0.00 0.00 0.00 3.41
523 524 2.961526 ATCGGTCATTCAACGCTAGT 57.038 45.000 0.00 0.00 0.00 2.57
534 535 5.253330 ACAACAATAACAGGAATCGGTCAT 58.747 37.500 0.00 0.00 0.00 3.06
538 539 4.261801 AGGACAACAATAACAGGAATCGG 58.738 43.478 0.00 0.00 0.00 4.18
539 540 5.880054 AAGGACAACAATAACAGGAATCG 57.120 39.130 0.00 0.00 0.00 3.34
542 543 7.014808 CCCTAAAAAGGACAACAATAACAGGAA 59.985 37.037 0.00 0.00 0.00 3.36
545 546 7.519032 TCCCTAAAAAGGACAACAATAACAG 57.481 36.000 0.00 0.00 0.00 3.16
546 547 9.238368 CTATCCCTAAAAAGGACAACAATAACA 57.762 33.333 0.00 0.00 35.85 2.41
551 552 4.698304 CGCTATCCCTAAAAAGGACAACAA 59.302 41.667 0.00 0.00 35.85 2.83
552 553 4.258543 CGCTATCCCTAAAAAGGACAACA 58.741 43.478 0.00 0.00 35.85 3.33
553 554 4.259356 ACGCTATCCCTAAAAAGGACAAC 58.741 43.478 0.00 0.00 35.85 3.32
560 561 4.724074 TCTTCGACGCTATCCCTAAAAA 57.276 40.909 0.00 0.00 0.00 1.94
561 562 4.340097 TCATCTTCGACGCTATCCCTAAAA 59.660 41.667 0.00 0.00 0.00 1.52
562 563 3.887110 TCATCTTCGACGCTATCCCTAAA 59.113 43.478 0.00 0.00 0.00 1.85
563 564 3.252701 GTCATCTTCGACGCTATCCCTAA 59.747 47.826 0.00 0.00 0.00 2.69
564 565 2.812591 GTCATCTTCGACGCTATCCCTA 59.187 50.000 0.00 0.00 0.00 3.53
565 566 1.609555 GTCATCTTCGACGCTATCCCT 59.390 52.381 0.00 0.00 0.00 4.20
566 567 1.609555 AGTCATCTTCGACGCTATCCC 59.390 52.381 0.00 0.00 40.98 3.85
598 623 6.479972 TTGATATATGGGTGTCTCTTTCGT 57.520 37.500 0.00 0.00 0.00 3.85
599 624 6.309009 CGATTGATATATGGGTGTCTCTTTCG 59.691 42.308 0.00 0.00 0.00 3.46
606 631 4.806247 GCTAGCGATTGATATATGGGTGTC 59.194 45.833 0.00 0.00 0.00 3.67
611 636 4.307443 TCCGCTAGCGATTGATATATGG 57.693 45.455 37.39 16.19 42.83 2.74
623 648 4.795970 ATTTCTATGTTTTCCGCTAGCG 57.204 40.909 29.93 29.93 39.44 4.26
625 650 8.649973 AAGAGTATTTCTATGTTTTCCGCTAG 57.350 34.615 0.00 0.00 34.14 3.42
627 652 7.065923 GGAAAGAGTATTTCTATGTTTTCCGCT 59.934 37.037 9.93 0.00 34.14 5.52
629 654 8.263940 TGGAAAGAGTATTTCTATGTTTTCCG 57.736 34.615 9.93 0.00 39.27 4.30
637 662 9.981460 AGGACAATTTGGAAAGAGTATTTCTAT 57.019 29.630 9.93 0.07 34.14 1.98
647 672 5.630121 TCTTGCTAGGACAATTTGGAAAGA 58.370 37.500 0.78 0.00 0.00 2.52
657 682 1.552337 CTCAGGCTCTTGCTAGGACAA 59.448 52.381 0.00 0.00 39.59 3.18
669 694 1.360820 GAAGGCGTAAACTCAGGCTC 58.639 55.000 0.00 0.00 39.97 4.70
751 777 3.573967 GGACATCACAGTTTTTGGATGGT 59.426 43.478 0.00 0.00 38.10 3.55
767 793 2.439156 GCTGGCAGGTGGGACATC 60.439 66.667 17.64 0.00 44.52 3.06
768 794 4.052518 GGCTGGCAGGTGGGACAT 62.053 66.667 17.64 0.00 44.52 3.06
822 849 0.036306 GTTTCTTTGAGGAGGCGGGA 59.964 55.000 0.00 0.00 0.00 5.14
1400 5568 0.744414 CTAATCTGGTGGTGGTGGCG 60.744 60.000 0.00 0.00 0.00 5.69
1424 5604 0.389426 CAACGACCACGAACCCTAGG 60.389 60.000 0.06 0.06 42.66 3.02
1444 5624 0.506080 GCGAGATGCTGCGATTACAG 59.494 55.000 0.00 0.00 41.73 2.74
1499 5679 5.471797 TCAACGATAAACTGCTCCAATTTCA 59.528 36.000 0.00 0.00 0.00 2.69
1507 5692 6.378582 TCCAAAATTCAACGATAAACTGCTC 58.621 36.000 0.00 0.00 0.00 4.26
1509 5694 6.149633 ACTCCAAAATTCAACGATAAACTGC 58.850 36.000 0.00 0.00 0.00 4.40
1510 5695 7.535258 CAGACTCCAAAATTCAACGATAAACTG 59.465 37.037 0.00 0.00 0.00 3.16
1525 5710 4.229304 TCAACAGAACCAGACTCCAAAA 57.771 40.909 0.00 0.00 0.00 2.44
1531 5716 5.233083 TCATGAATCAACAGAACCAGACT 57.767 39.130 0.00 0.00 0.00 3.24
1532 5717 7.615582 TTATCATGAATCAACAGAACCAGAC 57.384 36.000 0.00 0.00 0.00 3.51
1535 5720 8.183536 CGATTTTATCATGAATCAACAGAACCA 58.816 33.333 0.00 0.00 33.00 3.67
1536 5721 7.645340 CCGATTTTATCATGAATCAACAGAACC 59.355 37.037 0.00 0.00 33.00 3.62
1539 5724 7.254421 CGACCGATTTTATCATGAATCAACAGA 60.254 37.037 0.00 0.00 33.00 3.41
1540 5725 6.847792 CGACCGATTTTATCATGAATCAACAG 59.152 38.462 0.00 0.00 33.00 3.16
1542 5727 6.943981 TCGACCGATTTTATCATGAATCAAC 58.056 36.000 0.00 0.00 33.00 3.18
1543 5728 7.728847 ATCGACCGATTTTATCATGAATCAA 57.271 32.000 0.00 0.00 33.00 2.57
1550 5735 3.807622 ACGCAATCGACCGATTTTATCAT 59.192 39.130 14.16 0.00 42.30 2.45
1562 5747 2.284417 GGAATCAGGTAACGCAATCGAC 59.716 50.000 0.00 0.00 46.39 4.20
1612 5814 1.425412 CGGTTCGTACAGGGACAAAG 58.575 55.000 0.00 0.00 0.00 2.77
1635 5880 6.601613 ACGGATTTGGCACTTGATTAAGATAA 59.398 34.615 3.94 0.00 37.36 1.75
1636 5881 6.119536 ACGGATTTGGCACTTGATTAAGATA 58.880 36.000 3.94 0.00 37.36 1.98
1650 5895 2.218953 TATCACTCGACGGATTTGGC 57.781 50.000 0.00 0.00 0.00 4.52
1671 5916 1.361668 CCAATGTCGACGCCTGAAGG 61.362 60.000 11.62 2.03 38.53 3.46
1753 6125 5.255397 TGACAAATATTTCTCACCCCTGT 57.745 39.130 2.37 0.00 0.00 4.00
1755 6127 5.126067 CGATGACAAATATTTCTCACCCCT 58.874 41.667 8.14 0.00 0.00 4.79
1852 6276 0.185901 AGCAGGAAAGCAGGTTGGAA 59.814 50.000 0.00 0.00 36.85 3.53
1866 6290 1.227205 GTGAGATCGCAGGAGCAGG 60.227 63.158 0.00 0.00 42.27 4.85
1919 6345 8.559536 GTCATGAGTAATTTCAGTCAGAACAAA 58.440 33.333 0.00 0.00 35.56 2.83
1922 6348 6.876257 AGGTCATGAGTAATTTCAGTCAGAAC 59.124 38.462 0.00 0.00 35.56 3.01
1988 6424 4.893608 TGATTCACTTGGAACTCGATTCA 58.106 39.130 8.98 0.00 39.30 2.57
2003 6441 4.100808 AGGGAAGAGCAGTATCTGATTCAC 59.899 45.833 0.00 3.26 32.44 3.18
2005 6443 4.953940 AGGGAAGAGCAGTATCTGATTC 57.046 45.455 0.00 0.00 32.44 2.52
2007 6445 3.181456 GCAAGGGAAGAGCAGTATCTGAT 60.181 47.826 0.66 0.00 32.44 2.90
2009 6447 2.093288 TGCAAGGGAAGAGCAGTATCTG 60.093 50.000 0.00 0.00 33.75 2.90
2011 6449 2.698855 TGCAAGGGAAGAGCAGTATC 57.301 50.000 0.00 0.00 33.75 2.24
2019 6457 2.567615 GAGTCCTAACTGCAAGGGAAGA 59.432 50.000 3.08 0.00 39.30 2.87
2021 6459 1.628846 GGAGTCCTAACTGCAAGGGAA 59.371 52.381 0.41 0.00 42.95 3.97
2023 6461 1.065854 CAGGAGTCCTAACTGCAAGGG 60.066 57.143 12.53 0.00 45.64 3.95
2024 6462 2.393271 CAGGAGTCCTAACTGCAAGG 57.607 55.000 12.53 0.00 45.64 3.61
2066 6554 3.608796 TGAGCCATCACGATTCAAATGA 58.391 40.909 0.00 0.00 0.00 2.57
2076 6564 1.091771 GTGACCCATGAGCCATCACG 61.092 60.000 0.00 0.00 38.57 4.35
2081 6569 0.250858 CAACTGTGACCCATGAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
2083 6571 2.119801 ATCAACTGTGACCCATGAGC 57.880 50.000 0.00 0.00 36.31 4.26
2092 6606 4.143543 TCAGCCAAATGAATCAACTGTGA 58.856 39.130 0.00 0.00 38.41 3.58
2093 6607 4.508461 TCAGCCAAATGAATCAACTGTG 57.492 40.909 0.00 0.00 0.00 3.66
2098 6612 9.947433 AAATCTAATTTCAGCCAAATGAATCAA 57.053 25.926 0.00 0.00 38.90 2.57
2140 6654 7.655328 CCACTGTTTATTGCCATTCAAAAAGTA 59.345 33.333 0.00 0.00 38.34 2.24
2145 6659 4.040217 AGCCACTGTTTATTGCCATTCAAA 59.960 37.500 0.00 0.00 38.34 2.69
2287 6802 1.079336 GCCAGTTCCTCGTACACCC 60.079 63.158 0.00 0.00 0.00 4.61
2322 6838 1.633945 AGGAGCTACCCAATCGGTTTT 59.366 47.619 0.00 0.00 45.36 2.43
2352 6868 5.189928 ACTCCACTGAACAAATGTACACAA 58.810 37.500 0.00 0.00 0.00 3.33
2445 6961 2.965147 ACACAGAACAAGAAATTGGGGG 59.035 45.455 0.00 0.00 0.00 5.40
2514 7030 6.056884 ACCACGACACTTATTTTGGAACTTA 58.943 36.000 0.00 0.00 0.00 2.24
2517 7033 4.823790 ACCACGACACTTATTTTGGAAC 57.176 40.909 0.00 0.00 0.00 3.62
2520 7036 6.731164 ACTAAAACCACGACACTTATTTTGG 58.269 36.000 0.00 0.00 0.00 3.28
2521 7037 7.111041 CGAACTAAAACCACGACACTTATTTTG 59.889 37.037 0.00 0.00 0.00 2.44
2523 7039 6.479660 TCGAACTAAAACCACGACACTTATTT 59.520 34.615 0.00 0.00 0.00 1.40
2524 7040 5.984926 TCGAACTAAAACCACGACACTTATT 59.015 36.000 0.00 0.00 0.00 1.40
2526 7042 4.930963 TCGAACTAAAACCACGACACTTA 58.069 39.130 0.00 0.00 0.00 2.24
2529 7045 2.473984 CCTCGAACTAAAACCACGACAC 59.526 50.000 0.00 0.00 0.00 3.67
2530 7046 2.546373 CCCTCGAACTAAAACCACGACA 60.546 50.000 0.00 0.00 0.00 4.35
2531 7047 2.064014 CCCTCGAACTAAAACCACGAC 58.936 52.381 0.00 0.00 0.00 4.34
2532 7048 1.962807 TCCCTCGAACTAAAACCACGA 59.037 47.619 0.00 0.00 0.00 4.35
2533 7049 2.288640 ACTCCCTCGAACTAAAACCACG 60.289 50.000 0.00 0.00 0.00 4.94
2534 7050 3.397849 ACTCCCTCGAACTAAAACCAC 57.602 47.619 0.00 0.00 0.00 4.16
2535 7051 5.750352 AATACTCCCTCGAACTAAAACCA 57.250 39.130 0.00 0.00 0.00 3.67
2536 7052 6.404708 AGAAATACTCCCTCGAACTAAAACC 58.595 40.000 0.00 0.00 0.00 3.27
2537 7053 7.095270 TGAGAAATACTCCCTCGAACTAAAAC 58.905 38.462 0.00 0.00 44.34 2.43
2540 7056 6.209986 TGTTGAGAAATACTCCCTCGAACTAA 59.790 38.462 0.00 0.00 44.34 2.24
2542 7058 4.527038 TGTTGAGAAATACTCCCTCGAACT 59.473 41.667 0.00 0.00 44.34 3.01
2543 7059 4.817517 TGTTGAGAAATACTCCCTCGAAC 58.182 43.478 0.00 0.00 44.34 3.95
2545 7061 5.011738 ACTTTGTTGAGAAATACTCCCTCGA 59.988 40.000 0.00 0.00 44.34 4.04
2546 7062 5.238583 ACTTTGTTGAGAAATACTCCCTCG 58.761 41.667 0.00 0.00 44.34 4.63
2561 7081 9.019764 CCAAAGATTACACTGTTTACTTTGTTG 57.980 33.333 20.33 11.08 40.16 3.33
2573 7093 6.543465 TCCATTATGAGCCAAAGATTACACTG 59.457 38.462 0.00 0.00 0.00 3.66
2574 7094 6.662755 TCCATTATGAGCCAAAGATTACACT 58.337 36.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.