Multiple sequence alignment - TraesCS5A01G345300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G345300 chr5A 100.000 2411 0 0 1 2411 549187605 549185195 0.000000e+00 4453
1 TraesCS5A01G345300 chr5A 81.766 1382 177 39 266 1607 549197169 549195823 0.000000e+00 1086
2 TraesCS5A01G345300 chr5A 85.347 894 104 12 724 1612 549193267 549192396 0.000000e+00 900
3 TraesCS5A01G345300 chr5A 95.259 232 10 1 2180 2410 143352416 143352647 1.360000e-97 366
4 TraesCS5A01G345300 chr5A 80.868 507 58 19 225 703 549193756 549193261 1.760000e-96 363
5 TraesCS5A01G345300 chr5B 93.742 1566 80 5 632 2180 528555369 528553805 0.000000e+00 2333
6 TraesCS5A01G345300 chr5B 82.447 1373 183 32 266 1607 528571177 528569832 0.000000e+00 1147
7 TraesCS5A01G345300 chr5B 82.605 1328 160 31 224 1519 528567733 528566445 0.000000e+00 1107
8 TraesCS5A01G345300 chr5B 87.156 872 105 4 616 1481 528564313 528563443 0.000000e+00 983
9 TraesCS5A01G345300 chr5B 93.445 595 30 3 1 587 528555959 528555366 0.000000e+00 874
10 TraesCS5A01G345300 chr5B 78.077 853 108 43 717 1505 528544942 528544105 1.310000e-127 466
11 TraesCS5A01G345300 chr5B 94.606 241 11 2 2171 2410 588934465 588934704 2.930000e-99 372
12 TraesCS5A01G345300 chr5B 82.528 269 34 6 800 1062 526580966 526581227 8.670000e-55 224
13 TraesCS5A01G345300 chr5D 82.073 1389 172 38 266 1607 435259911 435258553 0.000000e+00 1114
14 TraesCS5A01G345300 chr5D 85.235 894 106 13 724 1612 435256176 435255304 0.000000e+00 896
15 TraesCS5A01G345300 chr5D 79.740 691 93 22 717 1363 433019019 433019706 7.860000e-125 457
16 TraesCS5A01G345300 chr5D 79.787 658 87 27 742 1359 434326629 434325978 1.020000e-118 436
17 TraesCS5A01G345300 chr7A 96.186 236 5 1 2180 2411 104812143 104811908 1.350000e-102 383
18 TraesCS5A01G345300 chr7B 95.690 232 10 0 2179 2410 551949248 551949479 8.140000e-100 374
19 TraesCS5A01G345300 chr3B 95.671 231 10 0 2180 2410 177085803 177085573 2.930000e-99 372
20 TraesCS5A01G345300 chr3A 95.671 231 10 0 2180 2410 686142640 686142870 2.930000e-99 372
21 TraesCS5A01G345300 chr6B 94.894 235 12 0 2176 2410 396924986 396925220 3.790000e-98 368
22 TraesCS5A01G345300 chr2B 94.215 242 13 1 2170 2410 399343621 399343862 3.790000e-98 368
23 TraesCS5A01G345300 chr6A 95.238 231 11 0 2180 2410 59571398 59571628 1.360000e-97 366


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G345300 chr5A 549185195 549187605 2410 True 4453.0 4453 100.000000 1 2411 1 chr5A.!!$R1 2410
1 TraesCS5A01G345300 chr5A 549192396 549197169 4773 True 783.0 1086 82.660333 225 1612 3 chr5A.!!$R2 1387
2 TraesCS5A01G345300 chr5B 528553805 528555959 2154 True 1603.5 2333 93.593500 1 2180 2 chr5B.!!$R2 2179
3 TraesCS5A01G345300 chr5B 528563443 528571177 7734 True 1079.0 1147 84.069333 224 1607 3 chr5B.!!$R3 1383
4 TraesCS5A01G345300 chr5B 528544105 528544942 837 True 466.0 466 78.077000 717 1505 1 chr5B.!!$R1 788
5 TraesCS5A01G345300 chr5D 435255304 435259911 4607 True 1005.0 1114 83.654000 266 1612 2 chr5D.!!$R2 1346
6 TraesCS5A01G345300 chr5D 433019019 433019706 687 False 457.0 457 79.740000 717 1363 1 chr5D.!!$F1 646
7 TraesCS5A01G345300 chr5D 434325978 434326629 651 True 436.0 436 79.787000 742 1359 1 chr5D.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 804 0.03759 TCACCCAAAATCTGGTCCCG 59.962 55.0 0.0 0.0 44.76 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 11732 0.033796 CAACCCACCTGGATCTGCAT 60.034 55.0 0.0 0.0 37.39 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.955905 GCCGGAGAGAGTACCTGATC 59.044 60.000 5.05 0.00 0.00 2.92
75 76 9.672673 AAGCACAATATATGAACTGACTTACTT 57.327 29.630 0.00 0.00 0.00 2.24
113 114 7.671302 TCTATGATATTACTGTTCCCAAGCTC 58.329 38.462 0.00 0.00 0.00 4.09
216 217 4.331717 AGTTTTGGTCTTCGTGTACACAAG 59.668 41.667 24.98 23.22 0.00 3.16
240 241 2.276740 GCCCTTGCCAGCCTACAT 59.723 61.111 0.00 0.00 0.00 2.29
312 313 1.152030 ACCAGGTGAGCCTCTTCCA 60.152 57.895 0.00 0.00 44.97 3.53
396 397 4.415881 TGGTAGCTTCTTGTGTTTCTGA 57.584 40.909 0.00 0.00 0.00 3.27
399 400 6.530120 TGGTAGCTTCTTGTGTTTCTGATTA 58.470 36.000 0.00 0.00 0.00 1.75
454 455 2.560105 GCTTGGAATGCTTTCTCCTGTT 59.440 45.455 11.68 0.00 33.64 3.16
504 506 8.099537 CACTTAGCCATGGATTTATATCTCAGT 58.900 37.037 18.40 4.39 0.00 3.41
589 668 4.129757 CATGCGCTACCATGCTGA 57.870 55.556 9.73 0.00 36.52 4.26
590 669 2.625375 CATGCGCTACCATGCTGAT 58.375 52.632 9.73 0.00 36.52 2.90
591 670 0.516001 CATGCGCTACCATGCTGATC 59.484 55.000 9.73 0.00 36.52 2.92
592 671 0.947660 ATGCGCTACCATGCTGATCG 60.948 55.000 9.73 0.00 0.00 3.69
593 672 2.313172 GCGCTACCATGCTGATCGG 61.313 63.158 0.00 0.00 0.00 4.18
594 673 1.068083 CGCTACCATGCTGATCGGT 59.932 57.895 2.89 0.00 36.79 4.69
595 674 0.941463 CGCTACCATGCTGATCGGTC 60.941 60.000 2.89 0.00 34.12 4.79
596 675 0.390860 GCTACCATGCTGATCGGTCT 59.609 55.000 2.89 0.00 34.12 3.85
597 676 1.613925 GCTACCATGCTGATCGGTCTA 59.386 52.381 2.89 0.00 34.12 2.59
598 677 2.352225 GCTACCATGCTGATCGGTCTAG 60.352 54.545 2.89 0.00 34.12 2.43
599 678 0.390860 ACCATGCTGATCGGTCTAGC 59.609 55.000 11.66 11.66 37.93 3.42
602 681 2.578683 TGCTGATCGGTCTAGCACA 58.421 52.632 15.78 0.00 42.05 4.57
603 682 0.894835 TGCTGATCGGTCTAGCACAA 59.105 50.000 15.78 0.00 42.05 3.33
604 683 1.134995 TGCTGATCGGTCTAGCACAAG 60.135 52.381 15.78 0.00 42.05 3.16
605 684 1.804372 GCTGATCGGTCTAGCACAAGG 60.804 57.143 13.15 0.00 37.40 3.61
606 685 1.751351 CTGATCGGTCTAGCACAAGGA 59.249 52.381 0.00 0.00 0.00 3.36
607 686 1.476891 TGATCGGTCTAGCACAAGGAC 59.523 52.381 0.00 0.00 0.00 3.85
608 687 0.824759 ATCGGTCTAGCACAAGGACC 59.175 55.000 0.00 0.00 44.16 4.46
609 688 1.218316 CGGTCTAGCACAAGGACCC 59.782 63.158 0.00 0.00 44.61 4.46
610 689 1.602771 GGTCTAGCACAAGGACCCC 59.397 63.158 0.00 0.00 42.45 4.95
611 690 1.198759 GGTCTAGCACAAGGACCCCA 61.199 60.000 0.00 0.00 42.45 4.96
612 691 0.690762 GTCTAGCACAAGGACCCCAA 59.309 55.000 0.00 0.00 0.00 4.12
613 692 0.984230 TCTAGCACAAGGACCCCAAG 59.016 55.000 0.00 0.00 0.00 3.61
614 693 0.693049 CTAGCACAAGGACCCCAAGT 59.307 55.000 0.00 0.00 0.00 3.16
615 694 1.073923 CTAGCACAAGGACCCCAAGTT 59.926 52.381 0.00 0.00 0.00 2.66
616 695 1.145571 AGCACAAGGACCCCAAGTTA 58.854 50.000 0.00 0.00 0.00 2.24
617 696 1.497286 AGCACAAGGACCCCAAGTTAA 59.503 47.619 0.00 0.00 0.00 2.01
618 697 2.110011 AGCACAAGGACCCCAAGTTAAT 59.890 45.455 0.00 0.00 0.00 1.40
619 698 2.897326 GCACAAGGACCCCAAGTTAATT 59.103 45.455 0.00 0.00 0.00 1.40
620 699 3.306019 GCACAAGGACCCCAAGTTAATTG 60.306 47.826 0.00 0.00 38.74 2.32
621 700 3.895041 CACAAGGACCCCAAGTTAATTGT 59.105 43.478 0.00 0.00 37.17 2.71
622 701 3.895041 ACAAGGACCCCAAGTTAATTGTG 59.105 43.478 0.00 0.00 37.17 3.33
623 702 4.148838 CAAGGACCCCAAGTTAATTGTGA 58.851 43.478 0.00 0.00 37.17 3.58
624 703 4.463050 AGGACCCCAAGTTAATTGTGAA 57.537 40.909 0.00 0.00 37.17 3.18
625 704 5.010708 AGGACCCCAAGTTAATTGTGAAT 57.989 39.130 0.00 0.00 37.17 2.57
626 705 5.016831 AGGACCCCAAGTTAATTGTGAATC 58.983 41.667 0.00 0.00 37.17 2.52
627 706 5.016831 GGACCCCAAGTTAATTGTGAATCT 58.983 41.667 0.00 0.00 37.17 2.40
628 707 5.105756 GGACCCCAAGTTAATTGTGAATCTG 60.106 44.000 0.00 0.00 37.17 2.90
629 708 4.220602 ACCCCAAGTTAATTGTGAATCTGC 59.779 41.667 0.00 0.00 37.17 4.26
630 709 4.414852 CCCAAGTTAATTGTGAATCTGCG 58.585 43.478 0.00 0.00 37.17 5.18
631 710 4.155826 CCCAAGTTAATTGTGAATCTGCGA 59.844 41.667 0.00 0.00 37.17 5.10
632 711 5.163622 CCCAAGTTAATTGTGAATCTGCGAT 60.164 40.000 0.00 0.00 37.17 4.58
633 712 5.740569 CCAAGTTAATTGTGAATCTGCGATG 59.259 40.000 0.00 0.00 37.17 3.84
634 713 4.913376 AGTTAATTGTGAATCTGCGATGC 58.087 39.130 0.00 0.00 0.00 3.91
675 754 1.529244 GCAAGTTGCCTGAGTGGGT 60.529 57.895 17.36 0.00 37.42 4.51
710 804 0.037590 TCACCCAAAATCTGGTCCCG 59.962 55.000 0.00 0.00 44.76 5.14
711 805 1.304134 ACCCAAAATCTGGTCCCGC 60.304 57.895 0.00 0.00 44.76 6.13
715 809 0.804989 CAAAATCTGGTCCCGCAGAC 59.195 55.000 0.00 0.00 45.51 3.51
831 929 2.165641 TCTGATAGCTACACACAACCCG 59.834 50.000 0.00 0.00 0.00 5.28
838 936 1.511318 TACACACAACCCGCACATGC 61.511 55.000 0.00 0.00 37.78 4.06
851 952 2.827190 CATGCGCACTGCCCTGAT 60.827 61.111 14.90 0.00 45.60 2.90
971 4602 5.585844 ACTTTTGGAGCCAAAGTGAAATTTG 59.414 36.000 13.78 0.00 45.15 2.32
1016 7909 8.512956 AGACTCAAACATGATTCATTCAAAGAG 58.487 33.333 0.00 4.34 38.03 2.85
1345 11329 2.191128 AGCGTTCTTGAGCTCCATTT 57.809 45.000 12.15 0.00 39.98 2.32
1484 11485 8.809468 TGTACAGTCTGATGTAAGAGTCTATT 57.191 34.615 6.91 0.00 37.41 1.73
1560 11561 0.901580 CCACTCCAAAGCCCAAGCAT 60.902 55.000 0.00 0.00 43.56 3.79
1584 11585 2.798976 TTTGCCGTAGTTCGTACAGT 57.201 45.000 0.00 0.00 37.94 3.55
1587 11588 1.334054 GCCGTAGTTCGTACAGTGTG 58.666 55.000 5.88 0.00 37.94 3.82
1612 11615 5.428253 TGAAGAAAGTAGACAAACTGCTGT 58.572 37.500 0.00 0.00 40.51 4.40
1641 11644 1.363744 CGTGAATGTCTGAAGGAGGC 58.636 55.000 0.00 0.00 0.00 4.70
1654 11657 6.001460 TCTGAAGGAGGCGAAATTCTTTTAA 58.999 36.000 0.00 0.00 0.00 1.52
1655 11658 6.149474 TCTGAAGGAGGCGAAATTCTTTTAAG 59.851 38.462 0.00 0.00 0.00 1.85
1670 11673 3.536158 TTTAAGTGCGTTGATGTCAGC 57.464 42.857 0.00 0.00 0.00 4.26
1678 11681 3.950794 TTGATGTCAGCGACGGGCC 62.951 63.158 0.00 0.00 45.17 5.80
1699 11702 3.136763 CTGCAGAGGCGTTGATGATTAT 58.863 45.455 8.42 0.00 45.35 1.28
1708 11711 4.527564 GCGTTGATGATTATACTGCCAAC 58.472 43.478 0.00 0.00 0.00 3.77
1709 11712 4.554723 GCGTTGATGATTATACTGCCAACC 60.555 45.833 0.00 0.00 31.54 3.77
1729 11732 2.390938 CGTCGATTTATGGCTAAGCGA 58.609 47.619 0.00 4.39 0.00 4.93
1738 11741 0.250038 TGGCTAAGCGATGCAGATCC 60.250 55.000 0.00 0.00 0.00 3.36
1759 11762 1.909302 AGGTGGGTTGAGTGGTCTATG 59.091 52.381 0.00 0.00 0.00 2.23
1769 11772 3.181434 TGAGTGGTCTATGGGTTTTTGCT 60.181 43.478 0.00 0.00 0.00 3.91
1810 11823 0.392193 AATGAACTCCTCTGCTGCCG 60.392 55.000 0.00 0.00 0.00 5.69
1814 11827 4.079850 CTCCTCTGCTGCCGCTGT 62.080 66.667 0.70 0.00 36.58 4.40
1866 11880 3.426568 GTTCTCCTGTGCCAGCGC 61.427 66.667 0.00 0.00 0.00 5.92
1878 11892 2.811317 CAGCGCCGTTGAGTCCTC 60.811 66.667 2.29 0.00 0.00 3.71
1895 11909 0.813210 CTCGGCTTCATTCTGGGAGC 60.813 60.000 0.00 0.00 0.00 4.70
1910 11924 1.270358 GGGAGCCTGCTATTTAGACGG 60.270 57.143 0.00 0.00 0.00 4.79
1967 11981 1.084370 GTCGGCTTCTCCACAATCCG 61.084 60.000 0.00 0.00 36.56 4.18
1970 11984 1.587547 GGCTTCTCCACAATCCGATC 58.412 55.000 0.00 0.00 34.01 3.69
1983 11997 7.444183 TCCACAATCCGATCAGAATTTAATACC 59.556 37.037 0.00 0.00 0.00 2.73
2006 12024 2.552093 TAAGCCCTCTAGCTGGACTT 57.448 50.000 0.00 1.06 44.11 3.01
2048 12066 6.800892 GCAGATTTTCTCAAGTTCTTCATGAC 59.199 38.462 0.00 0.00 0.00 3.06
2053 12071 2.746362 CTCAAGTTCTTCATGACCTGCC 59.254 50.000 0.00 0.00 0.00 4.85
2055 12073 3.152341 CAAGTTCTTCATGACCTGCCTT 58.848 45.455 0.00 0.00 0.00 4.35
2060 12078 4.365514 TCTTCATGACCTGCCTTTTGTA 57.634 40.909 0.00 0.00 0.00 2.41
2105 12123 7.920151 CACTTCCTTCTGTTCTATATCAGTCTG 59.080 40.741 0.00 0.00 33.89 3.51
2118 12136 2.238521 TCAGTCTGATTTTGGTTGGGC 58.761 47.619 0.00 0.00 0.00 5.36
2180 12198 5.121105 TGATGTTCTGCTCCATAGACATTG 58.879 41.667 0.00 0.00 0.00 2.82
2181 12199 4.558226 TGTTCTGCTCCATAGACATTGT 57.442 40.909 0.00 0.00 0.00 2.71
2182 12200 4.910195 TGTTCTGCTCCATAGACATTGTT 58.090 39.130 0.00 0.00 0.00 2.83
2183 12201 6.048732 TGTTCTGCTCCATAGACATTGTTA 57.951 37.500 0.00 0.00 0.00 2.41
2184 12202 6.108687 TGTTCTGCTCCATAGACATTGTTAG 58.891 40.000 0.00 0.00 0.00 2.34
2185 12203 6.070824 TGTTCTGCTCCATAGACATTGTTAGA 60.071 38.462 0.00 0.00 0.00 2.10
2186 12204 6.154203 TCTGCTCCATAGACATTGTTAGAG 57.846 41.667 0.00 0.00 0.00 2.43
2187 12205 5.658634 TCTGCTCCATAGACATTGTTAGAGT 59.341 40.000 0.00 0.00 0.00 3.24
2188 12206 6.155221 TCTGCTCCATAGACATTGTTAGAGTT 59.845 38.462 0.00 0.00 0.00 3.01
2189 12207 7.342026 TCTGCTCCATAGACATTGTTAGAGTTA 59.658 37.037 0.00 0.00 0.00 2.24
2190 12208 8.023021 TGCTCCATAGACATTGTTAGAGTTAT 57.977 34.615 0.00 0.00 0.00 1.89
2191 12209 9.143155 TGCTCCATAGACATTGTTAGAGTTATA 57.857 33.333 0.00 0.00 0.00 0.98
2192 12210 9.982651 GCTCCATAGACATTGTTAGAGTTATAA 57.017 33.333 0.00 0.00 0.00 0.98
2221 12239 8.747538 AAGTCATGTACCCCTTTGTATTTATC 57.252 34.615 0.00 0.00 0.00 1.75
2222 12240 7.287810 AGTCATGTACCCCTTTGTATTTATCC 58.712 38.462 0.00 0.00 0.00 2.59
2223 12241 6.489022 GTCATGTACCCCTTTGTATTTATCCC 59.511 42.308 0.00 0.00 0.00 3.85
2224 12242 5.038651 TGTACCCCTTTGTATTTATCCCG 57.961 43.478 0.00 0.00 0.00 5.14
2225 12243 4.474287 TGTACCCCTTTGTATTTATCCCGT 59.526 41.667 0.00 0.00 0.00 5.28
2226 12244 4.160642 ACCCCTTTGTATTTATCCCGTC 57.839 45.455 0.00 0.00 0.00 4.79
2227 12245 3.135994 CCCCTTTGTATTTATCCCGTCG 58.864 50.000 0.00 0.00 0.00 5.12
2228 12246 3.432608 CCCCTTTGTATTTATCCCGTCGT 60.433 47.826 0.00 0.00 0.00 4.34
2229 12247 4.202243 CCCCTTTGTATTTATCCCGTCGTA 60.202 45.833 0.00 0.00 0.00 3.43
2230 12248 5.511888 CCCCTTTGTATTTATCCCGTCGTAT 60.512 44.000 0.00 0.00 0.00 3.06
2231 12249 5.407387 CCCTTTGTATTTATCCCGTCGTATG 59.593 44.000 0.00 0.00 0.00 2.39
2232 12250 6.218019 CCTTTGTATTTATCCCGTCGTATGA 58.782 40.000 0.00 0.00 0.00 2.15
2233 12251 6.365247 CCTTTGTATTTATCCCGTCGTATGAG 59.635 42.308 0.00 0.00 0.00 2.90
2234 12252 5.381174 TGTATTTATCCCGTCGTATGAGG 57.619 43.478 0.00 0.00 0.00 3.86
2240 12258 3.357504 CCGTCGTATGAGGGGTTTC 57.642 57.895 14.77 0.00 44.65 2.78
2241 12259 0.179092 CCGTCGTATGAGGGGTTTCC 60.179 60.000 14.77 0.00 44.65 3.13
2252 12270 3.018423 AGGGGTTTCCTGCATATGTTC 57.982 47.619 4.29 0.00 46.07 3.18
2253 12271 2.031870 GGGGTTTCCTGCATATGTTCC 58.968 52.381 4.29 0.00 0.00 3.62
2254 12272 2.622977 GGGGTTTCCTGCATATGTTCCA 60.623 50.000 4.29 0.00 0.00 3.53
2255 12273 3.299503 GGGTTTCCTGCATATGTTCCAT 58.700 45.455 4.29 0.00 0.00 3.41
2256 12274 4.469657 GGGTTTCCTGCATATGTTCCATA 58.530 43.478 4.29 0.00 0.00 2.74
2257 12275 4.278419 GGGTTTCCTGCATATGTTCCATAC 59.722 45.833 4.29 0.00 0.00 2.39
2258 12276 4.278419 GGTTTCCTGCATATGTTCCATACC 59.722 45.833 4.29 2.95 0.00 2.73
2259 12277 5.133221 GTTTCCTGCATATGTTCCATACCT 58.867 41.667 4.29 0.00 0.00 3.08
2260 12278 4.356405 TCCTGCATATGTTCCATACCTG 57.644 45.455 4.29 0.00 0.00 4.00
2261 12279 3.716353 TCCTGCATATGTTCCATACCTGT 59.284 43.478 4.29 0.00 0.00 4.00
2262 12280 4.904853 TCCTGCATATGTTCCATACCTGTA 59.095 41.667 4.29 0.00 0.00 2.74
2263 12281 4.997395 CCTGCATATGTTCCATACCTGTAC 59.003 45.833 4.29 0.00 0.00 2.90
2264 12282 5.454613 CCTGCATATGTTCCATACCTGTACA 60.455 44.000 4.29 0.00 0.00 2.90
2265 12283 6.186420 TGCATATGTTCCATACCTGTACAT 57.814 37.500 4.29 0.00 33.16 2.29
2266 12284 5.997129 TGCATATGTTCCATACCTGTACATG 59.003 40.000 4.29 0.00 31.81 3.21
2267 12285 5.997746 GCATATGTTCCATACCTGTACATGT 59.002 40.000 2.69 2.69 31.81 3.21
2268 12286 7.158697 GCATATGTTCCATACCTGTACATGTA 58.841 38.462 12.58 12.58 31.81 2.29
2269 12287 7.824289 GCATATGTTCCATACCTGTACATGTAT 59.176 37.037 15.62 15.62 31.81 2.29
2282 12300 9.021807 ACCTGTACATGTATATATATATCGGCC 57.978 37.037 9.18 0.00 0.00 6.13
2283 12301 9.244292 CCTGTACATGTATATATATATCGGCCT 57.756 37.037 9.18 0.00 0.00 5.19
2298 12316 3.827505 GCCTATGGCCTCATGGAAA 57.172 52.632 3.32 0.00 44.06 3.13
2299 12317 2.299326 GCCTATGGCCTCATGGAAAT 57.701 50.000 3.32 0.00 44.06 2.17
2300 12318 3.439857 GCCTATGGCCTCATGGAAATA 57.560 47.619 3.32 0.00 44.06 1.40
2301 12319 3.973425 GCCTATGGCCTCATGGAAATAT 58.027 45.455 3.32 0.00 44.06 1.28
2302 12320 5.116084 GCCTATGGCCTCATGGAAATATA 57.884 43.478 3.32 0.00 44.06 0.86
2303 12321 5.509498 GCCTATGGCCTCATGGAAATATAA 58.491 41.667 3.32 0.00 44.06 0.98
2304 12322 5.591877 GCCTATGGCCTCATGGAAATATAAG 59.408 44.000 3.32 0.00 44.06 1.73
2305 12323 6.725364 CCTATGGCCTCATGGAAATATAAGT 58.275 40.000 3.32 0.00 34.27 2.24
2306 12324 7.177878 CCTATGGCCTCATGGAAATATAAGTT 58.822 38.462 3.32 0.00 34.27 2.66
2307 12325 6.906157 ATGGCCTCATGGAAATATAAGTTG 57.094 37.500 3.32 0.00 34.57 3.16
2308 12326 4.584325 TGGCCTCATGGAAATATAAGTTGC 59.416 41.667 3.32 0.00 34.57 4.17
2309 12327 4.829492 GGCCTCATGGAAATATAAGTTGCT 59.171 41.667 0.00 0.00 34.57 3.91
2310 12328 5.302823 GGCCTCATGGAAATATAAGTTGCTT 59.697 40.000 0.00 0.00 34.57 3.91
2311 12329 6.490040 GGCCTCATGGAAATATAAGTTGCTTA 59.510 38.462 0.00 0.00 34.57 3.09
2312 12330 7.177392 GGCCTCATGGAAATATAAGTTGCTTAT 59.823 37.037 0.00 6.63 36.71 1.73
2313 12331 8.579863 GCCTCATGGAAATATAAGTTGCTTATT 58.420 33.333 6.70 0.00 35.47 1.40
2316 12334 9.866655 TCATGGAAATATAAGTTGCTTATTCCT 57.133 29.630 15.16 4.86 37.72 3.36
2327 12345 8.823220 AAGTTGCTTATTCCTAACATGGTATT 57.177 30.769 0.00 0.00 0.00 1.89
2328 12346 9.914834 AAGTTGCTTATTCCTAACATGGTATTA 57.085 29.630 0.00 0.00 0.00 0.98
2329 12347 9.561069 AGTTGCTTATTCCTAACATGGTATTAG 57.439 33.333 0.00 0.00 0.00 1.73
2330 12348 9.555727 GTTGCTTATTCCTAACATGGTATTAGA 57.444 33.333 0.00 0.00 32.31 2.10
2331 12349 9.778741 TTGCTTATTCCTAACATGGTATTAGAG 57.221 33.333 0.00 0.00 32.31 2.43
2332 12350 7.878127 TGCTTATTCCTAACATGGTATTAGAGC 59.122 37.037 0.00 1.28 32.31 4.09
2333 12351 8.097662 GCTTATTCCTAACATGGTATTAGAGCT 58.902 37.037 0.00 0.00 32.31 4.09
2336 12354 8.958060 ATTCCTAACATGGTATTAGAGCTAGA 57.042 34.615 0.00 0.00 32.31 2.43
2337 12355 8.958060 TTCCTAACATGGTATTAGAGCTAGAT 57.042 34.615 0.00 0.00 32.31 1.98
2338 12356 8.582657 TCCTAACATGGTATTAGAGCTAGATC 57.417 38.462 0.00 0.00 32.31 2.75
2339 12357 8.170730 TCCTAACATGGTATTAGAGCTAGATCA 58.829 37.037 11.20 0.00 32.31 2.92
2340 12358 8.807118 CCTAACATGGTATTAGAGCTAGATCAA 58.193 37.037 11.20 3.21 32.31 2.57
2372 12390 2.987535 GCAACTCGTGCGTTTGATC 58.012 52.632 10.96 0.00 45.10 2.92
2373 12391 0.452784 GCAACTCGTGCGTTTGATCC 60.453 55.000 10.96 0.00 45.10 3.36
2374 12392 0.179250 CAACTCGTGCGTTTGATCCG 60.179 55.000 0.00 0.00 0.00 4.18
2375 12393 0.599204 AACTCGTGCGTTTGATCCGT 60.599 50.000 0.00 0.00 0.00 4.69
2376 12394 1.007336 ACTCGTGCGTTTGATCCGTC 61.007 55.000 0.00 0.00 0.00 4.79
2377 12395 0.732880 CTCGTGCGTTTGATCCGTCT 60.733 55.000 0.00 0.00 0.00 4.18
2378 12396 1.006825 TCGTGCGTTTGATCCGTCTG 61.007 55.000 0.00 0.00 0.00 3.51
2379 12397 1.282248 CGTGCGTTTGATCCGTCTGT 61.282 55.000 0.00 0.00 0.00 3.41
2380 12398 0.865769 GTGCGTTTGATCCGTCTGTT 59.134 50.000 0.00 0.00 0.00 3.16
2381 12399 1.263217 GTGCGTTTGATCCGTCTGTTT 59.737 47.619 0.00 0.00 0.00 2.83
2382 12400 1.262950 TGCGTTTGATCCGTCTGTTTG 59.737 47.619 0.00 0.00 0.00 2.93
2383 12401 1.529438 GCGTTTGATCCGTCTGTTTGA 59.471 47.619 0.00 0.00 0.00 2.69
2384 12402 2.159627 GCGTTTGATCCGTCTGTTTGAT 59.840 45.455 0.00 0.00 0.00 2.57
2385 12403 3.725010 GCGTTTGATCCGTCTGTTTGATC 60.725 47.826 0.00 0.00 36.33 2.92
2386 12404 3.481951 CGTTTGATCCGTCTGTTTGATCG 60.482 47.826 0.00 0.00 38.15 3.69
2387 12405 3.586100 TTGATCCGTCTGTTTGATCGA 57.414 42.857 0.00 0.00 38.15 3.59
2388 12406 3.586100 TGATCCGTCTGTTTGATCGAA 57.414 42.857 0.00 0.00 38.15 3.71
2389 12407 3.511699 TGATCCGTCTGTTTGATCGAAG 58.488 45.455 0.00 0.00 38.15 3.79
2390 12408 1.710013 TCCGTCTGTTTGATCGAAGC 58.290 50.000 0.00 0.00 0.00 3.86
2391 12409 1.000394 TCCGTCTGTTTGATCGAAGCA 60.000 47.619 0.00 0.00 0.00 3.91
2392 12410 1.798223 CCGTCTGTTTGATCGAAGCAA 59.202 47.619 0.00 0.00 0.00 3.91
2393 12411 2.416547 CCGTCTGTTTGATCGAAGCAAT 59.583 45.455 0.00 0.00 0.00 3.56
2394 12412 3.484229 CCGTCTGTTTGATCGAAGCAATC 60.484 47.826 0.00 5.51 0.00 2.67
2395 12413 3.484229 CGTCTGTTTGATCGAAGCAATCC 60.484 47.826 0.00 1.38 0.00 3.01
2396 12414 2.672874 TCTGTTTGATCGAAGCAATCCG 59.327 45.455 0.00 2.52 0.00 4.18
2397 12415 1.130373 TGTTTGATCGAAGCAATCCGC 59.870 47.619 0.00 0.00 42.91 5.54
2406 12424 3.943967 GCAATCCGCTCGATCTCC 58.056 61.111 0.00 0.00 37.77 3.71
2407 12425 1.365633 GCAATCCGCTCGATCTCCT 59.634 57.895 0.00 0.00 37.77 3.69
2408 12426 0.665972 GCAATCCGCTCGATCTCCTC 60.666 60.000 0.00 0.00 37.77 3.71
2409 12427 0.958091 CAATCCGCTCGATCTCCTCT 59.042 55.000 0.00 0.00 0.00 3.69
2410 12428 1.068610 CAATCCGCTCGATCTCCTCTC 60.069 57.143 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.981183 TGTGGTGTGGGATCAGGTAC 59.019 55.000 0.00 0.00 0.00 3.34
39 40 1.614996 TATTGTGCTTGTGGTGTGGG 58.385 50.000 0.00 0.00 0.00 4.61
87 88 8.212259 AGCTTGGGAACAGTAATATCATAGAT 57.788 34.615 0.00 0.00 44.54 1.98
92 93 5.396772 CCAGAGCTTGGGAACAGTAATATCA 60.397 44.000 6.96 0.00 43.75 2.15
108 109 0.034670 GCATCCCAAGACCAGAGCTT 60.035 55.000 0.00 0.00 0.00 3.74
113 114 3.287867 AAGTATGCATCCCAAGACCAG 57.712 47.619 0.19 0.00 0.00 4.00
240 241 1.070821 CTGTGGTACGTCGTACTCGA 58.929 55.000 29.11 14.57 44.12 4.04
312 313 3.717294 GGATGGTGGTCTGCGGGT 61.717 66.667 0.00 0.00 0.00 5.28
399 400 8.286191 ACAAAAGAATCTCTTCAGTTTTCAGT 57.714 30.769 0.00 0.00 35.27 3.41
454 455 1.073025 AAAGACCATCGCTGCACCA 59.927 52.632 0.00 0.00 0.00 4.17
552 554 0.461135 CACTTGCCAAACACTTGCCT 59.539 50.000 0.00 0.00 0.00 4.75
587 666 1.476891 GTCCTTGTGCTAGACCGATCA 59.523 52.381 0.00 0.00 0.00 2.92
588 667 1.202428 GGTCCTTGTGCTAGACCGATC 60.202 57.143 0.00 0.00 40.65 3.69
589 668 0.824759 GGTCCTTGTGCTAGACCGAT 59.175 55.000 0.00 0.00 40.65 4.18
590 669 2.273908 GGTCCTTGTGCTAGACCGA 58.726 57.895 0.00 0.00 40.65 4.69
591 670 4.913126 GGTCCTTGTGCTAGACCG 57.087 61.111 0.00 0.00 40.65 4.79
593 672 0.690762 TTGGGGTCCTTGTGCTAGAC 59.309 55.000 0.00 0.00 0.00 2.59
594 673 0.984230 CTTGGGGTCCTTGTGCTAGA 59.016 55.000 0.00 0.00 0.00 2.43
595 674 0.693049 ACTTGGGGTCCTTGTGCTAG 59.307 55.000 0.00 0.00 0.00 3.42
596 675 1.145571 AACTTGGGGTCCTTGTGCTA 58.854 50.000 0.00 0.00 0.00 3.49
597 676 1.145571 TAACTTGGGGTCCTTGTGCT 58.854 50.000 0.00 0.00 0.00 4.40
598 677 1.989706 TTAACTTGGGGTCCTTGTGC 58.010 50.000 0.00 0.00 0.00 4.57
599 678 3.895041 ACAATTAACTTGGGGTCCTTGTG 59.105 43.478 0.00 0.00 39.30 3.33
600 679 3.895041 CACAATTAACTTGGGGTCCTTGT 59.105 43.478 0.00 0.00 39.30 3.16
601 680 4.148838 TCACAATTAACTTGGGGTCCTTG 58.851 43.478 0.00 0.00 38.89 3.61
602 681 4.463050 TCACAATTAACTTGGGGTCCTT 57.537 40.909 0.00 0.00 38.89 3.36
603 682 4.463050 TTCACAATTAACTTGGGGTCCT 57.537 40.909 0.00 0.00 38.89 3.85
604 683 5.016831 AGATTCACAATTAACTTGGGGTCC 58.983 41.667 1.67 0.00 38.89 4.46
605 684 5.622233 GCAGATTCACAATTAACTTGGGGTC 60.622 44.000 1.67 1.68 38.89 4.46
606 685 4.220602 GCAGATTCACAATTAACTTGGGGT 59.779 41.667 1.67 0.00 38.89 4.95
607 686 4.675146 CGCAGATTCACAATTAACTTGGGG 60.675 45.833 0.00 0.00 38.89 4.96
608 687 4.155826 TCGCAGATTCACAATTAACTTGGG 59.844 41.667 0.00 0.00 39.81 4.12
609 688 5.295431 TCGCAGATTCACAATTAACTTGG 57.705 39.130 0.00 0.00 39.30 3.61
610 689 5.228635 GCATCGCAGATTCACAATTAACTTG 59.771 40.000 0.00 0.00 45.12 3.16
611 690 5.335127 GCATCGCAGATTCACAATTAACTT 58.665 37.500 0.00 0.00 45.12 2.66
612 691 4.201950 GGCATCGCAGATTCACAATTAACT 60.202 41.667 0.00 0.00 45.12 2.24
613 692 4.037690 GGCATCGCAGATTCACAATTAAC 58.962 43.478 0.00 0.00 45.12 2.01
614 693 3.066621 GGGCATCGCAGATTCACAATTAA 59.933 43.478 0.00 0.00 45.12 1.40
615 694 2.618241 GGGCATCGCAGATTCACAATTA 59.382 45.455 0.00 0.00 45.12 1.40
616 695 1.406539 GGGCATCGCAGATTCACAATT 59.593 47.619 0.00 0.00 45.12 2.32
617 696 1.027357 GGGCATCGCAGATTCACAAT 58.973 50.000 0.00 0.00 45.12 2.71
618 697 0.322366 TGGGCATCGCAGATTCACAA 60.322 50.000 0.00 0.00 45.12 3.33
619 698 1.026182 GTGGGCATCGCAGATTCACA 61.026 55.000 0.00 0.00 45.12 3.58
620 699 1.718757 GGTGGGCATCGCAGATTCAC 61.719 60.000 0.00 0.00 45.12 3.18
621 700 1.451927 GGTGGGCATCGCAGATTCA 60.452 57.895 0.00 0.00 45.12 2.57
622 701 2.537560 CGGTGGGCATCGCAGATTC 61.538 63.158 0.00 0.00 45.12 2.52
623 702 2.514592 CGGTGGGCATCGCAGATT 60.515 61.111 0.00 0.00 45.12 2.40
633 712 1.153842 GCAGTATTTTGCGGTGGGC 60.154 57.895 0.00 0.00 43.96 5.36
675 754 3.266510 GGTGAGTGATCAGCCATTGTA 57.733 47.619 0.00 0.00 32.49 2.41
715 809 5.349543 TGTGATCACTGATTTTGACGAGATG 59.650 40.000 25.55 0.00 0.00 2.90
774 872 2.089980 GAGACAATGCCATGAGTGCTT 58.910 47.619 0.00 0.00 0.00 3.91
838 936 3.746949 GAGGGATCAGGGCAGTGCG 62.747 68.421 9.45 0.00 0.00 5.34
851 952 7.951245 GGATTTATAGTAGAAGGAAGAGAGGGA 59.049 40.741 0.00 0.00 0.00 4.20
971 4602 0.823356 TGAAGTGTTCTTGGCTGGCC 60.823 55.000 4.43 4.43 33.64 5.36
1033 7926 0.689623 ACCTTCCTCTGCCACTTCTG 59.310 55.000 0.00 0.00 0.00 3.02
1312 11296 0.609681 AACGCTCTCTCGACCTCCTT 60.610 55.000 0.00 0.00 0.00 3.36
1365 11349 1.227674 GAGTCCCACCGATGCATCC 60.228 63.158 20.87 4.98 0.00 3.51
1584 11585 5.294306 CAGTTTGTCTACTTTCTTCAGCACA 59.706 40.000 0.00 0.00 0.00 4.57
1587 11588 4.513318 AGCAGTTTGTCTACTTTCTTCAGC 59.487 41.667 0.00 0.00 0.00 4.26
1612 11615 1.347707 AGACATTCACGCCCTTTGAGA 59.652 47.619 0.00 0.00 0.00 3.27
1641 11644 6.359617 ACATCAACGCACTTAAAAGAATTTCG 59.640 34.615 0.00 0.00 37.28 3.46
1654 11657 1.006220 TCGCTGACATCAACGCACT 60.006 52.632 0.00 0.00 35.62 4.40
1655 11658 1.130613 GTCGCTGACATCAACGCAC 59.869 57.895 0.00 0.00 35.62 5.34
1678 11681 1.376543 AATCATCAACGCCTCTGCAG 58.623 50.000 7.63 7.63 37.32 4.41
1699 11702 3.191669 CATAAATCGACGGTTGGCAGTA 58.808 45.455 0.00 0.00 0.00 2.74
1708 11711 1.455786 CGCTTAGCCATAAATCGACGG 59.544 52.381 0.00 0.00 0.00 4.79
1709 11712 2.390938 TCGCTTAGCCATAAATCGACG 58.609 47.619 0.00 0.00 0.00 5.12
1729 11732 0.033796 CAACCCACCTGGATCTGCAT 60.034 55.000 0.00 0.00 37.39 3.96
1738 11741 1.348064 TAGACCACTCAACCCACCTG 58.652 55.000 0.00 0.00 0.00 4.00
1759 11762 0.396060 TTCATGCCCAGCAAAAACCC 59.604 50.000 0.00 0.00 43.62 4.11
1878 11892 1.821332 GGCTCCCAGAATGAAGCCG 60.821 63.158 7.20 0.00 39.69 5.52
1895 11909 1.871080 CTGCCCGTCTAAATAGCAGG 58.129 55.000 2.42 0.00 45.60 4.85
1940 11954 1.807573 GAGAAGCCGACAAGAGCCG 60.808 63.158 0.00 0.00 0.00 5.52
1967 11981 8.451748 GGGCTTATTCGGTATTAAATTCTGATC 58.548 37.037 0.00 0.00 0.00 2.92
1970 11984 7.661847 AGAGGGCTTATTCGGTATTAAATTCTG 59.338 37.037 0.00 0.00 0.00 3.02
1983 11997 1.964223 TCCAGCTAGAGGGCTTATTCG 59.036 52.381 0.00 0.00 41.00 3.34
2000 12018 1.949525 GCTTTTCTGCAGACAAGTCCA 59.050 47.619 32.48 10.68 35.05 4.02
2006 12024 1.391577 TGCTTGCTTTTCTGCAGACA 58.608 45.000 18.03 7.33 44.27 3.41
2048 12066 5.922544 CACTTCTTGAATTACAAAAGGCAGG 59.077 40.000 0.00 0.00 38.08 4.85
2055 12073 9.567848 GTGTCTTTTCACTTCTTGAATTACAAA 57.432 29.630 0.00 0.00 43.99 2.83
2087 12105 8.762645 ACCAAAATCAGACTGATATAGAACAGA 58.237 33.333 18.24 0.00 35.76 3.41
2105 12123 3.192541 AGTTTGTGCCCAACCAAAATC 57.807 42.857 0.00 0.00 0.00 2.17
2195 12213 9.841295 GATAAATACAAAGGGGTACATGACTTA 57.159 33.333 0.00 0.00 0.00 2.24
2196 12214 7.778382 GGATAAATACAAAGGGGTACATGACTT 59.222 37.037 0.00 0.00 0.00 3.01
2197 12215 7.287810 GGATAAATACAAAGGGGTACATGACT 58.712 38.462 0.00 0.00 0.00 3.41
2198 12216 6.489022 GGGATAAATACAAAGGGGTACATGAC 59.511 42.308 0.00 0.00 0.00 3.06
2199 12217 6.607019 GGGATAAATACAAAGGGGTACATGA 58.393 40.000 0.00 0.00 0.00 3.07
2200 12218 5.472137 CGGGATAAATACAAAGGGGTACATG 59.528 44.000 0.00 0.00 0.00 3.21
2201 12219 5.133153 ACGGGATAAATACAAAGGGGTACAT 59.867 40.000 0.00 0.00 0.00 2.29
2202 12220 4.474287 ACGGGATAAATACAAAGGGGTACA 59.526 41.667 0.00 0.00 0.00 2.90
2203 12221 5.039920 ACGGGATAAATACAAAGGGGTAC 57.960 43.478 0.00 0.00 0.00 3.34
2204 12222 4.202243 CGACGGGATAAATACAAAGGGGTA 60.202 45.833 0.00 0.00 0.00 3.69
2205 12223 3.432608 CGACGGGATAAATACAAAGGGGT 60.433 47.826 0.00 0.00 0.00 4.95
2206 12224 3.135994 CGACGGGATAAATACAAAGGGG 58.864 50.000 0.00 0.00 0.00 4.79
2207 12225 3.800531 ACGACGGGATAAATACAAAGGG 58.199 45.455 0.00 0.00 0.00 3.95
2208 12226 6.218019 TCATACGACGGGATAAATACAAAGG 58.782 40.000 0.00 0.00 0.00 3.11
2209 12227 6.365247 CCTCATACGACGGGATAAATACAAAG 59.635 42.308 0.00 0.00 0.00 2.77
2210 12228 6.218019 CCTCATACGACGGGATAAATACAAA 58.782 40.000 0.00 0.00 0.00 2.83
2211 12229 5.279106 CCCTCATACGACGGGATAAATACAA 60.279 44.000 0.00 0.00 40.55 2.41
2212 12230 4.219070 CCCTCATACGACGGGATAAATACA 59.781 45.833 0.00 0.00 40.55 2.29
2213 12231 4.381292 CCCCTCATACGACGGGATAAATAC 60.381 50.000 0.00 0.00 39.25 1.89
2214 12232 3.765511 CCCCTCATACGACGGGATAAATA 59.234 47.826 0.00 0.00 39.25 1.40
2215 12233 2.565834 CCCCTCATACGACGGGATAAAT 59.434 50.000 0.00 0.00 39.25 1.40
2216 12234 1.965643 CCCCTCATACGACGGGATAAA 59.034 52.381 0.00 0.00 39.25 1.40
2217 12235 1.133388 ACCCCTCATACGACGGGATAA 60.133 52.381 0.00 0.00 39.25 1.75
2218 12236 0.479815 ACCCCTCATACGACGGGATA 59.520 55.000 0.00 0.00 39.25 2.59
2219 12237 0.398098 AACCCCTCATACGACGGGAT 60.398 55.000 0.00 0.00 39.25 3.85
2220 12238 0.615544 AAACCCCTCATACGACGGGA 60.616 55.000 0.00 0.00 39.25 5.14
2221 12239 0.179092 GAAACCCCTCATACGACGGG 60.179 60.000 0.00 0.00 41.84 5.28
2222 12240 0.179092 GGAAACCCCTCATACGACGG 60.179 60.000 0.00 0.00 0.00 4.79
2223 12241 0.822164 AGGAAACCCCTCATACGACG 59.178 55.000 0.00 0.00 43.31 5.12
2224 12242 1.742750 GCAGGAAACCCCTCATACGAC 60.743 57.143 0.00 0.00 45.60 4.34
2225 12243 0.539986 GCAGGAAACCCCTCATACGA 59.460 55.000 0.00 0.00 45.60 3.43
2226 12244 0.251916 TGCAGGAAACCCCTCATACG 59.748 55.000 0.00 0.00 45.60 3.06
2227 12245 2.736670 ATGCAGGAAACCCCTCATAC 57.263 50.000 0.00 0.00 45.60 2.39
2228 12246 3.721575 ACATATGCAGGAAACCCCTCATA 59.278 43.478 1.58 0.00 45.60 2.15
2229 12247 2.515429 ACATATGCAGGAAACCCCTCAT 59.485 45.455 1.58 0.00 45.60 2.90
2230 12248 1.922447 ACATATGCAGGAAACCCCTCA 59.078 47.619 1.58 0.00 45.60 3.86
2231 12249 2.736670 ACATATGCAGGAAACCCCTC 57.263 50.000 1.58 0.00 45.60 4.30
2233 12251 2.031870 GGAACATATGCAGGAAACCCC 58.968 52.381 1.58 0.00 0.00 4.95
2234 12252 2.733956 TGGAACATATGCAGGAAACCC 58.266 47.619 1.58 0.00 0.00 4.11
2256 12274 9.021807 GGCCGATATATATATACATGTACAGGT 57.978 37.037 18.23 18.23 0.00 4.00
2257 12275 9.244292 AGGCCGATATATATATACATGTACAGG 57.756 37.037 7.96 5.87 0.00 4.00
2262 12280 8.696374 GCCATAGGCCGATATATATATACATGT 58.304 37.037 2.69 2.69 44.06 3.21
2281 12299 6.725364 ACTTATATTTCCATGAGGCCATAGG 58.275 40.000 5.01 0.53 33.74 2.57
2282 12300 7.362401 GCAACTTATATTTCCATGAGGCCATAG 60.362 40.741 5.01 0.00 33.74 2.23
2283 12301 6.434028 GCAACTTATATTTCCATGAGGCCATA 59.566 38.462 5.01 0.00 33.74 2.74
2284 12302 5.244626 GCAACTTATATTTCCATGAGGCCAT 59.755 40.000 5.01 0.00 33.74 4.40
2285 12303 4.584325 GCAACTTATATTTCCATGAGGCCA 59.416 41.667 5.01 0.00 33.74 5.36
2286 12304 4.829492 AGCAACTTATATTTCCATGAGGCC 59.171 41.667 0.00 0.00 33.74 5.19
2287 12305 6.396829 AAGCAACTTATATTTCCATGAGGC 57.603 37.500 0.00 0.00 33.74 4.70
2290 12308 9.866655 AGGAATAAGCAACTTATATTTCCATGA 57.133 29.630 15.47 0.00 36.16 3.07
2301 12319 9.914834 AATACCATGTTAGGAATAAGCAACTTA 57.085 29.630 0.00 0.00 0.00 2.24
2302 12320 8.823220 AATACCATGTTAGGAATAAGCAACTT 57.177 30.769 0.00 0.00 0.00 2.66
2303 12321 9.561069 CTAATACCATGTTAGGAATAAGCAACT 57.439 33.333 0.00 0.00 0.00 3.16
2304 12322 9.555727 TCTAATACCATGTTAGGAATAAGCAAC 57.444 33.333 0.00 0.00 31.59 4.17
2305 12323 9.778741 CTCTAATACCATGTTAGGAATAAGCAA 57.221 33.333 0.00 0.00 31.59 3.91
2306 12324 7.878127 GCTCTAATACCATGTTAGGAATAAGCA 59.122 37.037 0.00 0.00 31.59 3.91
2307 12325 8.097662 AGCTCTAATACCATGTTAGGAATAAGC 58.902 37.037 0.00 0.00 31.59 3.09
2311 12329 8.958060 TCTAGCTCTAATACCATGTTAGGAAT 57.042 34.615 0.00 0.00 31.59 3.01
2312 12330 8.958060 ATCTAGCTCTAATACCATGTTAGGAA 57.042 34.615 0.00 0.00 31.59 3.36
2313 12331 8.170730 TGATCTAGCTCTAATACCATGTTAGGA 58.829 37.037 0.00 0.00 31.59 2.94
2314 12332 8.354711 TGATCTAGCTCTAATACCATGTTAGG 57.645 38.462 0.00 0.00 31.59 2.69
2355 12373 0.179250 CGGATCAAACGCACGAGTTG 60.179 55.000 0.00 1.09 34.14 3.16
2356 12374 0.599204 ACGGATCAAACGCACGAGTT 60.599 50.000 0.00 0.00 35.59 3.01
2357 12375 1.006571 ACGGATCAAACGCACGAGT 60.007 52.632 0.00 0.00 34.00 4.18
2358 12376 0.732880 AGACGGATCAAACGCACGAG 60.733 55.000 0.00 0.00 34.00 4.18
2359 12377 1.006825 CAGACGGATCAAACGCACGA 61.007 55.000 0.00 0.00 34.00 4.35
2360 12378 1.282248 ACAGACGGATCAAACGCACG 61.282 55.000 0.00 0.00 34.00 5.34
2361 12379 0.865769 AACAGACGGATCAAACGCAC 59.134 50.000 0.00 0.00 34.00 5.34
2362 12380 1.262950 CAAACAGACGGATCAAACGCA 59.737 47.619 0.00 0.00 34.00 5.24
2363 12381 1.529438 TCAAACAGACGGATCAAACGC 59.471 47.619 0.00 0.00 34.00 4.84
2364 12382 3.481951 CGATCAAACAGACGGATCAAACG 60.482 47.826 0.00 0.00 37.81 3.60
2365 12383 3.678072 TCGATCAAACAGACGGATCAAAC 59.322 43.478 0.00 0.00 37.81 2.93
2366 12384 3.920446 TCGATCAAACAGACGGATCAAA 58.080 40.909 0.00 0.00 37.81 2.69
2367 12385 3.586100 TCGATCAAACAGACGGATCAA 57.414 42.857 0.00 0.00 37.81 2.57
2368 12386 3.511699 CTTCGATCAAACAGACGGATCA 58.488 45.455 0.00 0.00 37.81 2.92
2369 12387 2.282820 GCTTCGATCAAACAGACGGATC 59.717 50.000 0.00 0.00 35.28 3.36
2370 12388 2.271800 GCTTCGATCAAACAGACGGAT 58.728 47.619 0.00 0.00 0.00 4.18
2371 12389 1.000394 TGCTTCGATCAAACAGACGGA 60.000 47.619 0.00 0.00 0.00 4.69
2372 12390 1.428448 TGCTTCGATCAAACAGACGG 58.572 50.000 0.00 0.00 0.00 4.79
2373 12391 3.484229 GGATTGCTTCGATCAAACAGACG 60.484 47.826 4.98 0.00 0.00 4.18
2374 12392 3.484229 CGGATTGCTTCGATCAAACAGAC 60.484 47.826 4.98 0.00 0.00 3.51
2375 12393 2.672874 CGGATTGCTTCGATCAAACAGA 59.327 45.455 4.98 0.00 0.00 3.41
2376 12394 2.789092 GCGGATTGCTTCGATCAAACAG 60.789 50.000 4.98 4.90 41.73 3.16
2377 12395 1.130373 GCGGATTGCTTCGATCAAACA 59.870 47.619 4.98 0.00 41.73 2.83
2378 12396 1.815132 GCGGATTGCTTCGATCAAAC 58.185 50.000 4.98 3.04 41.73 2.93
2389 12407 0.665972 GAGGAGATCGAGCGGATTGC 60.666 60.000 0.00 0.00 46.98 3.56
2390 12408 0.958091 AGAGGAGATCGAGCGGATTG 59.042 55.000 0.00 0.00 34.82 2.67
2391 12409 1.243902 GAGAGGAGATCGAGCGGATT 58.756 55.000 0.00 0.00 34.82 3.01
2392 12410 2.941210 GAGAGGAGATCGAGCGGAT 58.059 57.895 0.00 0.00 38.35 4.18
2393 12411 4.466133 GAGAGGAGATCGAGCGGA 57.534 61.111 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.