Multiple sequence alignment - TraesCS5A01G345200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G345200 chr5A 100.000 3419 0 0 1 3419 549185737 549182319 0.000000e+00 6314
1 TraesCS5A01G345200 chr5A 93.983 349 18 3 312 658 143352416 143352763 3.020000e-145 525
2 TraesCS5A01G345200 chr5A 98.438 64 1 0 686 749 549185116 549185053 2.790000e-21 113
3 TraesCS5A01G345200 chr7A 96.135 2070 34 16 686 2725 104811831 104809778 0.000000e+00 3338
4 TraesCS5A01G345200 chr7A 98.991 694 7 0 2726 3419 647431240 647431933 0.000000e+00 1243
5 TraesCS5A01G345200 chr7A 98.847 694 8 0 2726 3419 647234537 647233844 0.000000e+00 1238
6 TraesCS5A01G345200 chr7A 95.949 469 12 4 312 775 104812143 104811677 0.000000e+00 754
7 TraesCS5A01G345200 chr4B 97.141 1959 54 2 764 2722 117047769 117049725 0.000000e+00 3306
8 TraesCS5A01G345200 chr4B 98.847 694 7 1 2726 3419 673477669 673478361 0.000000e+00 1236
9 TraesCS5A01G345200 chr3B 96.997 1965 54 3 764 2725 177085310 177083348 0.000000e+00 3297
10 TraesCS5A01G345200 chr3B 98.993 695 6 1 2726 3419 729997596 729996902 0.000000e+00 1243
11 TraesCS5A01G345200 chr3B 94.302 351 18 2 312 661 177085803 177085454 1.400000e-148 536
12 TraesCS5A01G345200 chr2B 96.740 1963 59 3 764 2722 399344125 399346086 0.000000e+00 3265
13 TraesCS5A01G345200 chr2B 99.135 694 6 0 2726 3419 454623800 454624493 0.000000e+00 1249
14 TraesCS5A01G345200 chr2B 93.593 359 20 3 302 658 399343621 399343978 1.810000e-147 532
15 TraesCS5A01G345200 chr1B 96.590 1965 63 2 764 2725 435090438 435088475 0.000000e+00 3254
16 TraesCS5A01G345200 chr1B 98.711 698 9 0 2722 3419 626254524 626255221 0.000000e+00 1240
17 TraesCS5A01G345200 chr6B 96.546 1969 60 3 764 2725 561685413 561683446 0.000000e+00 3253
18 TraesCS5A01G345200 chr6B 94.034 352 19 2 308 658 396924986 396925336 1.810000e-147 532
19 TraesCS5A01G345200 chr4A 96.589 1964 61 3 764 2722 4788725 4790687 0.000000e+00 3251
20 TraesCS5A01G345200 chr4A 98.847 694 8 0 2726 3419 99467767 99467074 0.000000e+00 1238
21 TraesCS5A01G345200 chr5B 96.541 1966 60 3 764 2722 588934967 588936931 0.000000e+00 3247
22 TraesCS5A01G345200 chr5B 93.855 358 18 4 303 658 588934465 588934820 1.400000e-148 536
23 TraesCS5A01G345200 chr5B 93.671 316 16 1 1 312 528554120 528553805 1.440000e-128 470
24 TraesCS5A01G345200 chr3A 96.543 1967 59 3 764 2722 686143133 686145098 0.000000e+00 3247
25 TraesCS5A01G345200 chr3A 99.280 694 5 0 2726 3419 700180857 700181550 0.000000e+00 1254
26 TraesCS5A01G345200 chr3A 93.966 348 19 2 312 658 686142640 686142986 3.020000e-145 525
27 TraesCS5A01G345200 chr6A 96.534 1962 63 3 764 2722 59571891 59573850 0.000000e+00 3241
28 TraesCS5A01G345200 chr1A 99.135 694 6 0 2726 3419 515313298 515312605 0.000000e+00 1249
29 TraesCS5A01G345200 chr1A 94.000 350 17 4 312 658 299643834 299644182 8.400000e-146 527
30 TraesCS5A01G345200 chr7B 94.556 349 17 2 311 658 551949248 551949595 3.880000e-149 538


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G345200 chr5A 549182319 549185737 3418 True 3213.5 6314 99.2190 1 3419 2 chr5A.!!$R1 3418
1 TraesCS5A01G345200 chr7A 104809778 104812143 2365 True 2046.0 3338 96.0420 312 2725 2 chr7A.!!$R2 2413
2 TraesCS5A01G345200 chr7A 647431240 647431933 693 False 1243.0 1243 98.9910 2726 3419 1 chr7A.!!$F1 693
3 TraesCS5A01G345200 chr7A 647233844 647234537 693 True 1238.0 1238 98.8470 2726 3419 1 chr7A.!!$R1 693
4 TraesCS5A01G345200 chr4B 117047769 117049725 1956 False 3306.0 3306 97.1410 764 2722 1 chr4B.!!$F1 1958
5 TraesCS5A01G345200 chr4B 673477669 673478361 692 False 1236.0 1236 98.8470 2726 3419 1 chr4B.!!$F2 693
6 TraesCS5A01G345200 chr3B 177083348 177085803 2455 True 1916.5 3297 95.6495 312 2725 2 chr3B.!!$R2 2413
7 TraesCS5A01G345200 chr3B 729996902 729997596 694 True 1243.0 1243 98.9930 2726 3419 1 chr3B.!!$R1 693
8 TraesCS5A01G345200 chr2B 399343621 399346086 2465 False 1898.5 3265 95.1665 302 2722 2 chr2B.!!$F2 2420
9 TraesCS5A01G345200 chr2B 454623800 454624493 693 False 1249.0 1249 99.1350 2726 3419 1 chr2B.!!$F1 693
10 TraesCS5A01G345200 chr1B 435088475 435090438 1963 True 3254.0 3254 96.5900 764 2725 1 chr1B.!!$R1 1961
11 TraesCS5A01G345200 chr1B 626254524 626255221 697 False 1240.0 1240 98.7110 2722 3419 1 chr1B.!!$F1 697
12 TraesCS5A01G345200 chr6B 561683446 561685413 1967 True 3253.0 3253 96.5460 764 2725 1 chr6B.!!$R1 1961
13 TraesCS5A01G345200 chr4A 4788725 4790687 1962 False 3251.0 3251 96.5890 764 2722 1 chr4A.!!$F1 1958
14 TraesCS5A01G345200 chr4A 99467074 99467767 693 True 1238.0 1238 98.8470 2726 3419 1 chr4A.!!$R1 693
15 TraesCS5A01G345200 chr5B 588934465 588936931 2466 False 1891.5 3247 95.1980 303 2722 2 chr5B.!!$F1 2419
16 TraesCS5A01G345200 chr3A 686142640 686145098 2458 False 1886.0 3247 95.2545 312 2722 2 chr3A.!!$F2 2410
17 TraesCS5A01G345200 chr3A 700180857 700181550 693 False 1254.0 1254 99.2800 2726 3419 1 chr3A.!!$F1 693
18 TraesCS5A01G345200 chr6A 59571891 59573850 1959 False 3241.0 3241 96.5340 764 2722 1 chr6A.!!$F1 1958
19 TraesCS5A01G345200 chr1A 515312605 515313298 693 True 1249.0 1249 99.1350 2726 3419 1 chr1A.!!$R1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.034380 TAGACGGGCAGCTAGTGTCT 60.034 55.0 12.75 12.75 42.22 3.41 F
98 99 0.036388 TGTCGGCTTCTCCACAATCC 60.036 55.0 0.00 0.00 34.01 3.01 F
141 142 0.176910 GCCCTCTAGCTGGACTTGTC 59.823 60.0 0.00 0.00 0.00 3.18 F
148 149 0.761187 AGCTGGACTTGTCTGCAGAA 59.239 50.0 20.19 2.35 31.42 3.02 F
261 262 0.847373 TGGTTGGGCACAAACTAGGA 59.153 50.0 19.37 0.00 44.69 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1844 0.727970 GTAGCACTCGAGCGAGAAGA 59.272 55.000 24.81 5.82 44.53 2.87 R
1788 1882 3.074999 GCGACCTGAGCCTCCAGAG 62.075 68.421 0.00 0.00 36.29 3.35 R
2323 2420 3.648067 TCCTGGACAGAACAAGAGTCAAT 59.352 43.478 0.00 0.00 34.04 2.57 R
2417 2514 2.434428 CAGCAGAAGGAACATGAAGCT 58.566 47.619 0.00 0.00 0.00 3.74 R
2573 2670 6.722328 TGACACTCTAAAGAGACATCTCCTA 58.278 40.000 13.84 0.00 44.74 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.842869 GTTGAGTCCTCGGCTTCAT 57.157 52.632 0.00 0.00 0.00 2.57
19 20 2.100605 GTTGAGTCCTCGGCTTCATT 57.899 50.000 0.00 0.00 0.00 2.57
20 21 2.003301 GTTGAGTCCTCGGCTTCATTC 58.997 52.381 0.00 0.00 0.00 2.67
21 22 1.561643 TGAGTCCTCGGCTTCATTCT 58.438 50.000 0.00 0.00 0.00 2.40
22 23 1.205655 TGAGTCCTCGGCTTCATTCTG 59.794 52.381 0.00 0.00 0.00 3.02
23 24 0.539051 AGTCCTCGGCTTCATTCTGG 59.461 55.000 0.00 0.00 0.00 3.86
24 25 0.462759 GTCCTCGGCTTCATTCTGGG 60.463 60.000 0.00 0.00 0.00 4.45
25 26 0.617535 TCCTCGGCTTCATTCTGGGA 60.618 55.000 0.00 0.00 0.00 4.37
26 27 0.179062 CCTCGGCTTCATTCTGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
27 28 0.813210 CTCGGCTTCATTCTGGGAGC 60.813 60.000 0.00 0.00 0.00 4.70
28 29 1.821332 CGGCTTCATTCTGGGAGCC 60.821 63.158 2.27 2.27 38.91 4.70
29 30 1.611965 GGCTTCATTCTGGGAGCCT 59.388 57.895 5.23 0.00 39.18 4.58
30 31 0.750911 GGCTTCATTCTGGGAGCCTG 60.751 60.000 5.23 0.00 39.18 4.85
31 32 1.382692 GCTTCATTCTGGGAGCCTGC 61.383 60.000 0.00 0.00 0.00 4.85
32 33 0.255318 CTTCATTCTGGGAGCCTGCT 59.745 55.000 0.00 0.00 0.00 4.24
33 34 1.487976 CTTCATTCTGGGAGCCTGCTA 59.512 52.381 0.00 0.00 0.00 3.49
34 35 1.811778 TCATTCTGGGAGCCTGCTAT 58.188 50.000 0.00 0.00 0.00 2.97
35 36 2.130193 TCATTCTGGGAGCCTGCTATT 58.870 47.619 0.00 0.00 0.00 1.73
36 37 2.511218 TCATTCTGGGAGCCTGCTATTT 59.489 45.455 0.00 0.00 0.00 1.40
37 38 3.716353 TCATTCTGGGAGCCTGCTATTTA 59.284 43.478 0.00 0.00 0.00 1.40
38 39 3.845781 TTCTGGGAGCCTGCTATTTAG 57.154 47.619 0.00 0.00 0.00 1.85
39 40 3.046283 TCTGGGAGCCTGCTATTTAGA 57.954 47.619 0.00 0.00 0.00 2.10
40 41 2.700897 TCTGGGAGCCTGCTATTTAGAC 59.299 50.000 0.00 0.00 0.00 2.59
41 42 1.412710 TGGGAGCCTGCTATTTAGACG 59.587 52.381 0.00 0.00 0.00 4.18
42 43 1.270358 GGGAGCCTGCTATTTAGACGG 60.270 57.143 0.00 0.00 0.00 4.79
43 44 1.270358 GGAGCCTGCTATTTAGACGGG 60.270 57.143 0.00 0.00 0.00 5.28
44 45 0.106894 AGCCTGCTATTTAGACGGGC 59.893 55.000 17.20 17.20 44.74 6.13
45 46 0.179056 GCCTGCTATTTAGACGGGCA 60.179 55.000 18.78 0.00 44.28 5.36
46 47 1.871080 CCTGCTATTTAGACGGGCAG 58.129 55.000 0.00 0.00 46.62 4.85
47 48 1.221414 CTGCTATTTAGACGGGCAGC 58.779 55.000 0.00 0.00 42.63 5.25
48 49 0.830648 TGCTATTTAGACGGGCAGCT 59.169 50.000 0.00 0.00 0.00 4.24
49 50 2.035961 CTGCTATTTAGACGGGCAGCTA 59.964 50.000 0.00 0.00 42.63 3.32
50 51 2.035961 TGCTATTTAGACGGGCAGCTAG 59.964 50.000 0.00 0.00 0.00 3.42
51 52 2.036089 GCTATTTAGACGGGCAGCTAGT 59.964 50.000 0.00 0.00 0.00 2.57
52 53 2.604046 ATTTAGACGGGCAGCTAGTG 57.396 50.000 0.00 0.00 0.00 2.74
53 54 1.263356 TTTAGACGGGCAGCTAGTGT 58.737 50.000 0.00 0.00 0.00 3.55
54 55 0.815734 TTAGACGGGCAGCTAGTGTC 59.184 55.000 0.00 0.00 0.00 3.67
55 56 0.034380 TAGACGGGCAGCTAGTGTCT 60.034 55.000 12.75 12.75 42.22 3.41
56 57 1.153745 GACGGGCAGCTAGTGTCTG 60.154 63.158 0.00 4.75 43.53 3.51
62 63 3.134401 CAGCTAGTGTCTGCAGGTG 57.866 57.895 15.13 0.00 0.00 4.00
63 64 0.319728 CAGCTAGTGTCTGCAGGTGT 59.680 55.000 15.13 0.00 34.04 4.16
64 65 0.319728 AGCTAGTGTCTGCAGGTGTG 59.680 55.000 15.13 1.12 0.00 3.82
65 66 0.671781 GCTAGTGTCTGCAGGTGTGG 60.672 60.000 15.13 1.71 0.00 4.17
66 67 0.036952 CTAGTGTCTGCAGGTGTGGG 60.037 60.000 15.13 0.00 0.00 4.61
67 68 2.111999 TAGTGTCTGCAGGTGTGGGC 62.112 60.000 15.13 0.00 0.00 5.36
68 69 3.170672 TGTCTGCAGGTGTGGGCT 61.171 61.111 15.13 0.00 0.00 5.19
69 70 2.670934 GTCTGCAGGTGTGGGCTG 60.671 66.667 15.13 0.00 0.00 4.85
70 71 3.957586 TCTGCAGGTGTGGGCTGG 61.958 66.667 15.13 0.00 0.00 4.85
88 89 3.491652 GCGGCTCTTGTCGGCTTC 61.492 66.667 0.00 0.00 42.23 3.86
89 90 2.262915 CGGCTCTTGTCGGCTTCT 59.737 61.111 0.00 0.00 37.69 2.85
90 91 1.807573 CGGCTCTTGTCGGCTTCTC 60.808 63.158 0.00 0.00 37.69 2.87
91 92 1.448717 GGCTCTTGTCGGCTTCTCC 60.449 63.158 0.00 0.00 0.00 3.71
92 93 1.293498 GCTCTTGTCGGCTTCTCCA 59.707 57.895 0.00 0.00 34.01 3.86
93 94 1.016653 GCTCTTGTCGGCTTCTCCAC 61.017 60.000 0.00 0.00 34.01 4.02
94 95 0.318441 CTCTTGTCGGCTTCTCCACA 59.682 55.000 0.00 0.00 34.01 4.17
95 96 0.756294 TCTTGTCGGCTTCTCCACAA 59.244 50.000 0.00 0.00 35.79 3.33
96 97 1.347707 TCTTGTCGGCTTCTCCACAAT 59.652 47.619 0.00 0.00 36.22 2.71
97 98 1.734465 CTTGTCGGCTTCTCCACAATC 59.266 52.381 0.00 0.00 36.22 2.67
98 99 0.036388 TGTCGGCTTCTCCACAATCC 60.036 55.000 0.00 0.00 34.01 3.01
99 100 1.084370 GTCGGCTTCTCCACAATCCG 61.084 60.000 0.00 0.00 36.56 4.18
100 101 1.218047 CGGCTTCTCCACAATCCGA 59.782 57.895 0.00 0.00 37.24 4.55
101 102 0.179073 CGGCTTCTCCACAATCCGAT 60.179 55.000 0.00 0.00 37.24 4.18
102 103 1.587547 GGCTTCTCCACAATCCGATC 58.412 55.000 0.00 0.00 34.01 3.69
103 104 1.134401 GGCTTCTCCACAATCCGATCA 60.134 52.381 0.00 0.00 34.01 2.92
104 105 2.208431 GCTTCTCCACAATCCGATCAG 58.792 52.381 0.00 0.00 0.00 2.90
105 106 2.159043 GCTTCTCCACAATCCGATCAGA 60.159 50.000 0.00 0.00 0.00 3.27
106 107 3.679917 GCTTCTCCACAATCCGATCAGAA 60.680 47.826 0.00 0.00 0.00 3.02
107 108 4.701765 CTTCTCCACAATCCGATCAGAAT 58.298 43.478 0.00 0.00 0.00 2.40
108 109 4.760530 TCTCCACAATCCGATCAGAATT 57.239 40.909 0.00 0.00 0.00 2.17
109 110 5.102953 TCTCCACAATCCGATCAGAATTT 57.897 39.130 0.00 0.00 0.00 1.82
110 111 6.233905 TCTCCACAATCCGATCAGAATTTA 57.766 37.500 0.00 0.00 0.00 1.40
111 112 6.649155 TCTCCACAATCCGATCAGAATTTAA 58.351 36.000 0.00 0.00 0.00 1.52
112 113 7.282585 TCTCCACAATCCGATCAGAATTTAAT 58.717 34.615 0.00 0.00 0.00 1.40
113 114 8.428852 TCTCCACAATCCGATCAGAATTTAATA 58.571 33.333 0.00 0.00 0.00 0.98
114 115 8.378172 TCCACAATCCGATCAGAATTTAATAC 57.622 34.615 0.00 0.00 0.00 1.89
115 116 7.444183 TCCACAATCCGATCAGAATTTAATACC 59.556 37.037 0.00 0.00 0.00 2.73
116 117 7.290842 CACAATCCGATCAGAATTTAATACCG 58.709 38.462 0.00 0.00 0.00 4.02
117 118 7.170828 CACAATCCGATCAGAATTTAATACCGA 59.829 37.037 0.00 0.00 0.00 4.69
118 119 7.713507 ACAATCCGATCAGAATTTAATACCGAA 59.286 33.333 0.00 0.00 0.00 4.30
119 120 8.721478 CAATCCGATCAGAATTTAATACCGAAT 58.279 33.333 0.00 0.00 0.00 3.34
120 121 9.938280 AATCCGATCAGAATTTAATACCGAATA 57.062 29.630 0.00 0.00 0.00 1.75
121 122 9.938280 ATCCGATCAGAATTTAATACCGAATAA 57.062 29.630 0.00 0.00 0.00 1.40
122 123 9.419297 TCCGATCAGAATTTAATACCGAATAAG 57.581 33.333 0.00 0.00 0.00 1.73
123 124 8.169268 CCGATCAGAATTTAATACCGAATAAGC 58.831 37.037 0.00 0.00 0.00 3.09
124 125 8.169268 CGATCAGAATTTAATACCGAATAAGCC 58.831 37.037 0.00 0.00 0.00 4.35
125 126 7.739498 TCAGAATTTAATACCGAATAAGCCC 57.261 36.000 0.00 0.00 0.00 5.19
126 127 7.514721 TCAGAATTTAATACCGAATAAGCCCT 58.485 34.615 0.00 0.00 0.00 5.19
127 128 7.660208 TCAGAATTTAATACCGAATAAGCCCTC 59.340 37.037 0.00 0.00 0.00 4.30
128 129 7.661847 CAGAATTTAATACCGAATAAGCCCTCT 59.338 37.037 0.00 0.00 0.00 3.69
129 130 8.877195 AGAATTTAATACCGAATAAGCCCTCTA 58.123 33.333 0.00 0.00 0.00 2.43
130 131 9.152595 GAATTTAATACCGAATAAGCCCTCTAG 57.847 37.037 0.00 0.00 0.00 2.43
131 132 4.538746 AATACCGAATAAGCCCTCTAGC 57.461 45.455 0.00 0.00 0.00 3.42
133 134 1.689273 ACCGAATAAGCCCTCTAGCTG 59.311 52.381 0.00 0.00 44.11 4.24
134 135 1.001406 CCGAATAAGCCCTCTAGCTGG 59.999 57.143 0.00 0.00 44.11 4.85
135 136 1.964223 CGAATAAGCCCTCTAGCTGGA 59.036 52.381 0.00 0.00 44.11 3.86
136 137 2.288518 CGAATAAGCCCTCTAGCTGGAC 60.289 54.545 0.00 0.00 44.11 4.02
137 138 2.785357 ATAAGCCCTCTAGCTGGACT 57.215 50.000 0.00 0.00 44.11 3.85
138 139 2.552093 TAAGCCCTCTAGCTGGACTT 57.448 50.000 0.00 1.06 44.11 3.01
139 140 0.908198 AAGCCCTCTAGCTGGACTTG 59.092 55.000 0.00 0.00 44.11 3.16
140 141 0.252467 AGCCCTCTAGCTGGACTTGT 60.252 55.000 0.00 0.00 42.95 3.16
141 142 0.176910 GCCCTCTAGCTGGACTTGTC 59.823 60.000 0.00 0.00 0.00 3.18
142 143 1.859302 CCCTCTAGCTGGACTTGTCT 58.141 55.000 0.00 0.00 0.00 3.41
143 144 1.480137 CCCTCTAGCTGGACTTGTCTG 59.520 57.143 0.00 0.00 0.00 3.51
144 145 1.134848 CCTCTAGCTGGACTTGTCTGC 60.135 57.143 0.00 6.07 0.00 4.26
145 146 1.547820 CTCTAGCTGGACTTGTCTGCA 59.452 52.381 16.26 0.00 0.00 4.41
146 147 1.547820 TCTAGCTGGACTTGTCTGCAG 59.452 52.381 7.63 7.63 32.92 4.41
147 148 1.547820 CTAGCTGGACTTGTCTGCAGA 59.452 52.381 13.74 13.74 31.42 4.26
148 149 0.761187 AGCTGGACTTGTCTGCAGAA 59.239 50.000 20.19 2.35 31.42 3.02
149 150 1.141657 AGCTGGACTTGTCTGCAGAAA 59.858 47.619 20.19 11.15 31.42 2.52
150 151 1.949525 GCTGGACTTGTCTGCAGAAAA 59.050 47.619 20.19 19.17 31.42 2.29
151 152 2.031333 GCTGGACTTGTCTGCAGAAAAG 60.031 50.000 35.25 35.25 43.40 2.27
152 153 1.949525 TGGACTTGTCTGCAGAAAAGC 59.050 47.619 36.32 28.88 41.91 3.51
153 154 1.949525 GGACTTGTCTGCAGAAAAGCA 59.050 47.619 36.32 20.90 41.91 3.91
154 155 2.358898 GGACTTGTCTGCAGAAAAGCAA 59.641 45.455 36.32 25.50 45.13 3.91
155 156 3.549625 GGACTTGTCTGCAGAAAAGCAAG 60.550 47.826 36.32 32.50 45.13 4.01
156 157 2.223665 ACTTGTCTGCAGAAAAGCAAGC 60.224 45.455 36.32 16.33 45.13 4.01
157 158 1.391577 TGTCTGCAGAAAAGCAAGCA 58.608 45.000 20.19 6.64 45.13 3.91
162 163 3.738830 TGCAGAAAAGCAAGCAGATTT 57.261 38.095 0.00 0.00 42.46 2.17
170 171 5.526506 AAAGCAAGCAGATTTTCTCAAGT 57.473 34.783 0.00 0.00 30.18 3.16
171 172 5.526506 AAGCAAGCAGATTTTCTCAAGTT 57.473 34.783 0.00 0.00 0.00 2.66
172 173 5.118642 AGCAAGCAGATTTTCTCAAGTTC 57.881 39.130 0.00 0.00 0.00 3.01
173 174 4.826183 AGCAAGCAGATTTTCTCAAGTTCT 59.174 37.500 0.00 0.00 0.00 3.01
174 175 5.301298 AGCAAGCAGATTTTCTCAAGTTCTT 59.699 36.000 0.00 0.00 0.00 2.52
175 176 5.628606 GCAAGCAGATTTTCTCAAGTTCTTC 59.371 40.000 0.00 0.00 0.00 2.87
176 177 6.732154 CAAGCAGATTTTCTCAAGTTCTTCA 58.268 36.000 0.00 0.00 0.00 3.02
177 178 7.368833 CAAGCAGATTTTCTCAAGTTCTTCAT 58.631 34.615 0.00 0.00 0.00 2.57
178 179 6.910995 AGCAGATTTTCTCAAGTTCTTCATG 58.089 36.000 0.00 0.00 0.00 3.07
179 180 6.713903 AGCAGATTTTCTCAAGTTCTTCATGA 59.286 34.615 0.00 0.00 0.00 3.07
180 181 6.800892 GCAGATTTTCTCAAGTTCTTCATGAC 59.199 38.462 0.00 0.00 0.00 3.06
181 182 7.303998 CAGATTTTCTCAAGTTCTTCATGACC 58.696 38.462 0.00 0.00 0.00 4.02
182 183 7.174599 CAGATTTTCTCAAGTTCTTCATGACCT 59.825 37.037 0.00 0.00 0.00 3.85
183 184 6.624352 TTTTCTCAAGTTCTTCATGACCTG 57.376 37.500 0.00 0.00 0.00 4.00
184 185 3.668447 TCTCAAGTTCTTCATGACCTGC 58.332 45.455 0.00 0.00 0.00 4.85
185 186 2.746362 CTCAAGTTCTTCATGACCTGCC 59.254 50.000 0.00 0.00 0.00 4.85
186 187 2.373169 TCAAGTTCTTCATGACCTGCCT 59.627 45.455 0.00 0.00 0.00 4.75
187 188 3.152341 CAAGTTCTTCATGACCTGCCTT 58.848 45.455 0.00 0.00 0.00 4.35
188 189 3.515602 AGTTCTTCATGACCTGCCTTT 57.484 42.857 0.00 0.00 0.00 3.11
189 190 3.837355 AGTTCTTCATGACCTGCCTTTT 58.163 40.909 0.00 0.00 0.00 2.27
190 191 3.571401 AGTTCTTCATGACCTGCCTTTTG 59.429 43.478 0.00 0.00 0.00 2.44
191 192 3.228188 TCTTCATGACCTGCCTTTTGT 57.772 42.857 0.00 0.00 0.00 2.83
192 193 4.365514 TCTTCATGACCTGCCTTTTGTA 57.634 40.909 0.00 0.00 0.00 2.41
193 194 4.724399 TCTTCATGACCTGCCTTTTGTAA 58.276 39.130 0.00 0.00 0.00 2.41
194 195 5.324409 TCTTCATGACCTGCCTTTTGTAAT 58.676 37.500 0.00 0.00 0.00 1.89
195 196 5.774690 TCTTCATGACCTGCCTTTTGTAATT 59.225 36.000 0.00 0.00 0.00 1.40
196 197 5.643379 TCATGACCTGCCTTTTGTAATTC 57.357 39.130 0.00 0.00 0.00 2.17
197 198 5.076182 TCATGACCTGCCTTTTGTAATTCA 58.924 37.500 0.00 0.00 0.00 2.57
198 199 5.538053 TCATGACCTGCCTTTTGTAATTCAA 59.462 36.000 0.00 0.00 0.00 2.69
199 200 5.452078 TGACCTGCCTTTTGTAATTCAAG 57.548 39.130 0.00 0.00 37.35 3.02
200 201 5.136828 TGACCTGCCTTTTGTAATTCAAGA 58.863 37.500 0.00 0.00 37.35 3.02
201 202 5.596361 TGACCTGCCTTTTGTAATTCAAGAA 59.404 36.000 0.00 0.00 37.35 2.52
202 203 6.089249 ACCTGCCTTTTGTAATTCAAGAAG 57.911 37.500 0.00 0.00 37.35 2.85
203 204 5.598417 ACCTGCCTTTTGTAATTCAAGAAGT 59.402 36.000 0.00 0.00 37.35 3.01
204 205 5.922544 CCTGCCTTTTGTAATTCAAGAAGTG 59.077 40.000 0.00 0.00 37.35 3.16
205 206 6.239008 CCTGCCTTTTGTAATTCAAGAAGTGA 60.239 38.462 0.00 0.00 37.35 3.41
224 225 5.819825 GTGAAAAGACACTTCCTTCTGTT 57.180 39.130 0.00 0.00 37.73 3.16
225 226 5.811588 GTGAAAAGACACTTCCTTCTGTTC 58.188 41.667 0.00 0.00 36.83 3.18
226 227 5.586643 GTGAAAAGACACTTCCTTCTGTTCT 59.413 40.000 3.76 0.00 37.11 3.01
227 228 6.761714 GTGAAAAGACACTTCCTTCTGTTCTA 59.238 38.462 3.76 0.00 37.11 2.10
228 229 7.442666 GTGAAAAGACACTTCCTTCTGTTCTAT 59.557 37.037 3.76 0.00 37.11 1.98
229 230 8.647796 TGAAAAGACACTTCCTTCTGTTCTATA 58.352 33.333 3.76 0.00 37.11 1.31
230 231 9.660180 GAAAAGACACTTCCTTCTGTTCTATAT 57.340 33.333 0.00 0.00 34.44 0.86
231 232 9.660180 AAAAGACACTTCCTTCTGTTCTATATC 57.340 33.333 0.00 0.00 0.00 1.63
232 233 7.962995 AGACACTTCCTTCTGTTCTATATCA 57.037 36.000 0.00 0.00 0.00 2.15
233 234 8.006298 AGACACTTCCTTCTGTTCTATATCAG 57.994 38.462 0.00 0.00 0.00 2.90
234 235 7.617723 AGACACTTCCTTCTGTTCTATATCAGT 59.382 37.037 0.00 0.00 33.89 3.41
235 236 7.777095 ACACTTCCTTCTGTTCTATATCAGTC 58.223 38.462 0.00 0.00 33.89 3.51
236 237 7.617723 ACACTTCCTTCTGTTCTATATCAGTCT 59.382 37.037 0.00 0.00 33.89 3.24
237 238 7.920151 CACTTCCTTCTGTTCTATATCAGTCTG 59.080 40.741 0.00 0.00 33.89 3.51
238 239 7.836685 ACTTCCTTCTGTTCTATATCAGTCTGA 59.163 37.037 4.68 4.68 33.89 3.27
239 240 8.774546 TTCCTTCTGTTCTATATCAGTCTGAT 57.225 34.615 19.12 19.12 40.72 2.90
240 241 8.774546 TCCTTCTGTTCTATATCAGTCTGATT 57.225 34.615 20.27 10.77 38.26 2.57
241 242 9.206690 TCCTTCTGTTCTATATCAGTCTGATTT 57.793 33.333 20.27 14.80 38.26 2.17
242 243 9.829507 CCTTCTGTTCTATATCAGTCTGATTTT 57.170 33.333 20.27 11.09 38.26 1.82
244 245 9.605275 TTCTGTTCTATATCAGTCTGATTTTGG 57.395 33.333 20.27 10.67 38.26 3.28
245 246 8.762645 TCTGTTCTATATCAGTCTGATTTTGGT 58.237 33.333 20.27 0.00 38.26 3.67
246 247 9.388506 CTGTTCTATATCAGTCTGATTTTGGTT 57.611 33.333 20.27 0.00 38.26 3.67
247 248 9.166173 TGTTCTATATCAGTCTGATTTTGGTTG 57.834 33.333 20.27 5.32 38.26 3.77
248 249 8.616076 GTTCTATATCAGTCTGATTTTGGTTGG 58.384 37.037 20.27 3.98 38.26 3.77
249 250 7.282585 TCTATATCAGTCTGATTTTGGTTGGG 58.717 38.462 20.27 2.64 38.26 4.12
250 251 2.238521 TCAGTCTGATTTTGGTTGGGC 58.761 47.619 0.00 0.00 0.00 5.36
251 252 1.962807 CAGTCTGATTTTGGTTGGGCA 59.037 47.619 0.00 0.00 0.00 5.36
252 253 1.963515 AGTCTGATTTTGGTTGGGCAC 59.036 47.619 0.00 0.00 0.00 5.01
253 254 1.686052 GTCTGATTTTGGTTGGGCACA 59.314 47.619 0.00 0.00 0.00 4.57
254 255 2.102252 GTCTGATTTTGGTTGGGCACAA 59.898 45.455 0.00 0.00 0.00 3.33
255 256 2.768527 TCTGATTTTGGTTGGGCACAAA 59.231 40.909 1.02 0.00 38.54 2.83
256 257 2.871633 CTGATTTTGGTTGGGCACAAAC 59.128 45.455 10.64 10.64 44.65 2.93
257 258 2.503356 TGATTTTGGTTGGGCACAAACT 59.497 40.909 19.37 0.00 44.69 2.66
258 259 3.706594 TGATTTTGGTTGGGCACAAACTA 59.293 39.130 19.37 7.71 44.69 2.24
259 260 3.810310 TTTTGGTTGGGCACAAACTAG 57.190 42.857 19.37 0.00 44.69 2.57
260 261 1.698506 TTGGTTGGGCACAAACTAGG 58.301 50.000 19.37 0.00 44.69 3.02
261 262 0.847373 TGGTTGGGCACAAACTAGGA 59.153 50.000 19.37 0.00 44.69 2.94
262 263 1.427368 TGGTTGGGCACAAACTAGGAT 59.573 47.619 19.37 0.00 44.69 3.24
263 264 2.645297 TGGTTGGGCACAAACTAGGATA 59.355 45.455 19.37 0.00 44.69 2.59
264 265 3.268334 TGGTTGGGCACAAACTAGGATAT 59.732 43.478 19.37 0.00 44.69 1.63
265 266 3.883489 GGTTGGGCACAAACTAGGATATC 59.117 47.826 10.21 0.00 41.15 1.63
266 267 4.523083 GTTGGGCACAAACTAGGATATCA 58.477 43.478 1.02 0.00 38.54 2.15
267 268 5.133221 GTTGGGCACAAACTAGGATATCAT 58.867 41.667 1.02 0.00 38.54 2.45
268 269 6.296026 GTTGGGCACAAACTAGGATATCATA 58.704 40.000 1.02 0.36 38.54 2.15
269 270 6.508030 TGGGCACAAACTAGGATATCATAA 57.492 37.500 4.83 0.00 0.00 1.90
270 271 6.905736 TGGGCACAAACTAGGATATCATAAA 58.094 36.000 4.83 0.00 0.00 1.40
271 272 7.526041 TGGGCACAAACTAGGATATCATAAAT 58.474 34.615 4.83 0.00 0.00 1.40
272 273 7.665559 TGGGCACAAACTAGGATATCATAAATC 59.334 37.037 4.83 0.00 0.00 2.17
273 274 7.885399 GGGCACAAACTAGGATATCATAAATCT 59.115 37.037 4.83 0.00 0.00 2.40
274 275 9.289782 GGCACAAACTAGGATATCATAAATCTT 57.710 33.333 4.83 0.00 0.00 2.40
294 295 7.876936 ATCTTTCTGATACTGCATTTGATGT 57.123 32.000 0.00 0.00 32.79 3.06
295 296 7.692460 TCTTTCTGATACTGCATTTGATGTT 57.308 32.000 0.00 0.00 0.00 2.71
296 297 7.755591 TCTTTCTGATACTGCATTTGATGTTC 58.244 34.615 0.00 0.00 0.00 3.18
297 298 7.609146 TCTTTCTGATACTGCATTTGATGTTCT 59.391 33.333 0.00 0.00 0.00 3.01
298 299 6.673154 TCTGATACTGCATTTGATGTTCTG 57.327 37.500 0.00 0.00 0.00 3.02
299 300 5.065602 TCTGATACTGCATTTGATGTTCTGC 59.934 40.000 0.00 0.00 35.21 4.26
300 301 4.945543 TGATACTGCATTTGATGTTCTGCT 59.054 37.500 0.00 0.00 35.66 4.24
301 302 3.844577 ACTGCATTTGATGTTCTGCTC 57.155 42.857 0.00 0.00 35.66 4.26
302 303 2.490903 ACTGCATTTGATGTTCTGCTCC 59.509 45.455 0.00 0.00 35.66 4.70
303 304 2.490509 CTGCATTTGATGTTCTGCTCCA 59.509 45.455 0.00 0.00 35.66 3.86
304 305 3.093814 TGCATTTGATGTTCTGCTCCAT 58.906 40.909 0.00 0.00 35.66 3.41
305 306 4.271661 TGCATTTGATGTTCTGCTCCATA 58.728 39.130 0.00 0.00 35.66 2.74
306 307 4.337274 TGCATTTGATGTTCTGCTCCATAG 59.663 41.667 0.00 0.00 35.66 2.23
307 308 4.577693 GCATTTGATGTTCTGCTCCATAGA 59.422 41.667 0.00 0.00 0.00 1.98
308 309 5.505324 GCATTTGATGTTCTGCTCCATAGAC 60.505 44.000 0.00 0.00 0.00 2.59
309 310 4.824479 TTGATGTTCTGCTCCATAGACA 57.176 40.909 0.00 0.00 0.00 3.41
310 311 5.363562 TTGATGTTCTGCTCCATAGACAT 57.636 39.130 0.00 0.00 0.00 3.06
358 359 4.160642 ACCCCTTTGTATTTATCCCGTC 57.839 45.455 0.00 0.00 0.00 4.79
433 438 3.973425 GCCTATGGCCTCATGGAAATAT 58.027 45.455 3.32 0.00 44.06 1.28
468 473 8.958060 ATTCCTAACATGGTATTAGAGCTAGA 57.042 34.615 0.00 0.00 32.31 2.43
513 519 1.263217 GTGCGTTTGATCCGTCTGTTT 59.737 47.619 0.00 0.00 0.00 2.83
602 609 1.152567 CCGATCTCCTCTCCAGCCT 60.153 63.158 0.00 0.00 0.00 4.58
992 1086 1.202794 TGAGTTCACTGGCTTCATGCA 60.203 47.619 0.00 0.00 45.15 3.96
1153 1247 1.134699 CGGCTAAGGTTGCTGATGAGA 60.135 52.381 0.00 0.00 38.99 3.27
1328 1422 5.003804 TGAATTTCTGGGTCTTTCTACTGC 58.996 41.667 0.00 0.00 0.00 4.40
1338 1432 4.873259 GGTCTTTCTACTGCCTTTGAGATC 59.127 45.833 0.00 0.00 0.00 2.75
1729 1823 2.691571 CTCGCTACTCGTGCTCCTA 58.308 57.895 0.00 0.00 39.67 2.94
1750 1844 2.362369 CCACCTGCTCCATCGACCT 61.362 63.158 0.00 0.00 0.00 3.85
1768 1862 1.010580 CTCTTCTCGCTCGAGTGCTA 58.989 55.000 21.17 8.47 42.49 3.49
1788 1882 4.785453 CCGCTCTTGCCCACTCCC 62.785 72.222 0.00 0.00 35.36 4.30
1956 2050 3.096489 GCCATTGCTTTGACTGAACAA 57.904 42.857 0.00 0.00 33.53 2.83
1963 2057 7.816031 CCATTGCTTTGACTGAACAAGATATTT 59.184 33.333 0.00 0.00 0.00 1.40
2372 2469 2.515901 GCACACTCTGGTTGGGGT 59.484 61.111 0.00 0.00 0.00 4.95
2417 2514 1.982958 GGGTCTTTGGGAGTTGGACTA 59.017 52.381 0.00 0.00 0.00 2.59
2573 2670 1.492993 GGCCTTCTGGGGTCTGTCTT 61.493 60.000 0.00 0.00 35.12 3.01
2629 2726 4.397417 GTCTTGGCAAGCAGATTCAGTTAT 59.603 41.667 22.31 0.00 0.00 1.89
2722 2819 3.390003 TTCGCTTCGAAAGGTGGTT 57.610 47.368 0.00 0.00 43.00 3.67
3181 3279 0.321996 GACTGGAAGGCGACCTCTTT 59.678 55.000 0.00 0.00 39.30 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.003301 GAATGAAGCCGAGGACTCAAC 58.997 52.381 0.00 0.00 0.00 3.18
6 7 0.617535 TCCCAGAATGAAGCCGAGGA 60.618 55.000 0.00 0.00 39.69 3.71
7 8 0.179062 CTCCCAGAATGAAGCCGAGG 60.179 60.000 0.00 0.00 39.69 4.63
9 10 1.221840 GCTCCCAGAATGAAGCCGA 59.778 57.895 0.00 0.00 39.69 5.54
10 11 1.821332 GGCTCCCAGAATGAAGCCG 60.821 63.158 7.20 0.00 39.69 5.52
11 12 0.750911 CAGGCTCCCAGAATGAAGCC 60.751 60.000 12.55 12.55 39.69 4.35
12 13 1.382692 GCAGGCTCCCAGAATGAAGC 61.383 60.000 0.00 0.00 39.69 3.86
13 14 0.255318 AGCAGGCTCCCAGAATGAAG 59.745 55.000 0.00 0.00 39.69 3.02
14 15 1.583556 TAGCAGGCTCCCAGAATGAA 58.416 50.000 0.00 0.00 39.69 2.57
15 16 1.811778 ATAGCAGGCTCCCAGAATGA 58.188 50.000 0.00 0.00 39.69 2.57
16 17 2.653234 AATAGCAGGCTCCCAGAATG 57.347 50.000 0.00 0.00 0.00 2.67
17 18 3.976654 TCTAAATAGCAGGCTCCCAGAAT 59.023 43.478 0.00 0.00 0.00 2.40
18 19 3.134804 GTCTAAATAGCAGGCTCCCAGAA 59.865 47.826 0.00 0.00 0.00 3.02
19 20 2.700897 GTCTAAATAGCAGGCTCCCAGA 59.299 50.000 0.00 0.00 0.00 3.86
20 21 2.546795 CGTCTAAATAGCAGGCTCCCAG 60.547 54.545 0.00 0.00 0.00 4.45
21 22 1.412710 CGTCTAAATAGCAGGCTCCCA 59.587 52.381 0.00 0.00 0.00 4.37
22 23 1.270358 CCGTCTAAATAGCAGGCTCCC 60.270 57.143 0.00 0.00 0.00 4.30
23 24 1.270358 CCCGTCTAAATAGCAGGCTCC 60.270 57.143 0.00 0.00 0.00 4.70
24 25 1.874320 GCCCGTCTAAATAGCAGGCTC 60.874 57.143 0.00 0.00 0.00 4.70
25 26 0.106894 GCCCGTCTAAATAGCAGGCT 59.893 55.000 0.00 0.00 0.00 4.58
26 27 0.179056 TGCCCGTCTAAATAGCAGGC 60.179 55.000 0.00 0.00 0.00 4.85
27 28 1.871080 CTGCCCGTCTAAATAGCAGG 58.129 55.000 2.42 0.00 45.60 4.85
29 30 0.830648 AGCTGCCCGTCTAAATAGCA 59.169 50.000 0.00 0.00 33.81 3.49
30 31 2.036089 ACTAGCTGCCCGTCTAAATAGC 59.964 50.000 0.00 0.00 0.00 2.97
31 32 3.068307 ACACTAGCTGCCCGTCTAAATAG 59.932 47.826 0.00 0.00 0.00 1.73
32 33 3.028850 ACACTAGCTGCCCGTCTAAATA 58.971 45.455 0.00 0.00 0.00 1.40
33 34 1.831736 ACACTAGCTGCCCGTCTAAAT 59.168 47.619 0.00 0.00 0.00 1.40
34 35 1.203994 GACACTAGCTGCCCGTCTAAA 59.796 52.381 0.00 0.00 0.00 1.85
35 36 0.815734 GACACTAGCTGCCCGTCTAA 59.184 55.000 0.00 0.00 0.00 2.10
36 37 0.034380 AGACACTAGCTGCCCGTCTA 60.034 55.000 0.00 0.00 35.24 2.59
37 38 1.304547 AGACACTAGCTGCCCGTCT 60.305 57.895 0.00 0.00 32.19 4.18
38 39 1.153745 CAGACACTAGCTGCCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
39 40 2.973899 CAGACACTAGCTGCCCGT 59.026 61.111 0.00 0.00 0.00 5.28
44 45 0.319728 ACACCTGCAGACACTAGCTG 59.680 55.000 17.39 0.00 36.47 4.24
45 46 0.319728 CACACCTGCAGACACTAGCT 59.680 55.000 17.39 0.00 0.00 3.32
46 47 0.671781 CCACACCTGCAGACACTAGC 60.672 60.000 17.39 0.00 0.00 3.42
47 48 0.036952 CCCACACCTGCAGACACTAG 60.037 60.000 17.39 0.00 0.00 2.57
48 49 2.057830 CCCACACCTGCAGACACTA 58.942 57.895 17.39 0.00 0.00 2.74
49 50 2.831770 CCCACACCTGCAGACACT 59.168 61.111 17.39 0.00 0.00 3.55
50 51 2.980233 GCCCACACCTGCAGACAC 60.980 66.667 17.39 0.00 0.00 3.67
51 52 3.170672 AGCCCACACCTGCAGACA 61.171 61.111 17.39 0.00 0.00 3.41
52 53 2.670934 CAGCCCACACCTGCAGAC 60.671 66.667 17.39 0.00 0.00 3.51
53 54 3.957586 CCAGCCCACACCTGCAGA 61.958 66.667 17.39 0.00 0.00 4.26
71 72 3.491652 GAAGCCGACAAGAGCCGC 61.492 66.667 0.00 0.00 0.00 6.53
72 73 1.807573 GAGAAGCCGACAAGAGCCG 60.808 63.158 0.00 0.00 0.00 5.52
73 74 1.448717 GGAGAAGCCGACAAGAGCC 60.449 63.158 0.00 0.00 0.00 4.70
74 75 1.016653 GTGGAGAAGCCGACAAGAGC 61.017 60.000 0.00 0.00 40.66 4.09
75 76 0.318441 TGTGGAGAAGCCGACAAGAG 59.682 55.000 0.00 0.00 40.66 2.85
76 77 0.756294 TTGTGGAGAAGCCGACAAGA 59.244 50.000 0.00 0.00 40.66 3.02
77 78 1.734465 GATTGTGGAGAAGCCGACAAG 59.266 52.381 0.00 0.00 39.40 3.16
78 79 1.610624 GGATTGTGGAGAAGCCGACAA 60.611 52.381 0.00 0.00 39.91 3.18
79 80 0.036388 GGATTGTGGAGAAGCCGACA 60.036 55.000 0.00 0.00 40.66 4.35
80 81 2.768834 GGATTGTGGAGAAGCCGAC 58.231 57.895 0.00 0.00 40.66 4.79
83 84 1.134401 TGATCGGATTGTGGAGAAGCC 60.134 52.381 0.00 0.00 37.10 4.35
84 85 2.159043 TCTGATCGGATTGTGGAGAAGC 60.159 50.000 0.00 0.00 0.00 3.86
85 86 3.808466 TCTGATCGGATTGTGGAGAAG 57.192 47.619 0.00 0.00 0.00 2.85
86 87 4.760530 ATTCTGATCGGATTGTGGAGAA 57.239 40.909 4.74 0.00 0.00 2.87
87 88 4.760530 AATTCTGATCGGATTGTGGAGA 57.239 40.909 4.74 0.00 0.00 3.71
88 89 6.925610 TTAAATTCTGATCGGATTGTGGAG 57.074 37.500 4.74 0.00 0.00 3.86
89 90 7.444183 GGTATTAAATTCTGATCGGATTGTGGA 59.556 37.037 4.74 0.00 0.00 4.02
90 91 7.571244 CGGTATTAAATTCTGATCGGATTGTGG 60.571 40.741 4.74 0.00 0.00 4.17
91 92 7.170828 TCGGTATTAAATTCTGATCGGATTGTG 59.829 37.037 4.74 0.00 0.00 3.33
92 93 7.214381 TCGGTATTAAATTCTGATCGGATTGT 58.786 34.615 4.74 0.00 0.00 2.71
93 94 7.652300 TCGGTATTAAATTCTGATCGGATTG 57.348 36.000 4.74 0.00 0.00 2.67
94 95 8.848474 ATTCGGTATTAAATTCTGATCGGATT 57.152 30.769 4.74 0.00 0.00 3.01
95 96 9.938280 TTATTCGGTATTAAATTCTGATCGGAT 57.062 29.630 4.74 0.00 0.00 4.18
96 97 9.419297 CTTATTCGGTATTAAATTCTGATCGGA 57.581 33.333 0.00 0.00 0.00 4.55
97 98 8.169268 GCTTATTCGGTATTAAATTCTGATCGG 58.831 37.037 0.00 0.00 0.00 4.18
98 99 8.169268 GGCTTATTCGGTATTAAATTCTGATCG 58.831 37.037 0.00 0.00 0.00 3.69
99 100 8.451748 GGGCTTATTCGGTATTAAATTCTGATC 58.548 37.037 0.00 0.00 0.00 2.92
100 101 8.164070 AGGGCTTATTCGGTATTAAATTCTGAT 58.836 33.333 0.00 0.00 0.00 2.90
101 102 7.514721 AGGGCTTATTCGGTATTAAATTCTGA 58.485 34.615 0.00 0.00 0.00 3.27
102 103 7.661847 AGAGGGCTTATTCGGTATTAAATTCTG 59.338 37.037 0.00 0.00 0.00 3.02
103 104 7.746703 AGAGGGCTTATTCGGTATTAAATTCT 58.253 34.615 0.00 0.00 0.00 2.40
104 105 7.981102 AGAGGGCTTATTCGGTATTAAATTC 57.019 36.000 0.00 0.00 0.00 2.17
105 106 7.606839 GCTAGAGGGCTTATTCGGTATTAAATT 59.393 37.037 0.00 0.00 0.00 1.82
106 107 7.038231 AGCTAGAGGGCTTATTCGGTATTAAAT 60.038 37.037 0.00 0.00 39.86 1.40
107 108 6.269307 AGCTAGAGGGCTTATTCGGTATTAAA 59.731 38.462 0.00 0.00 39.86 1.52
108 109 5.778750 AGCTAGAGGGCTTATTCGGTATTAA 59.221 40.000 0.00 0.00 39.86 1.40
109 110 5.185249 CAGCTAGAGGGCTTATTCGGTATTA 59.815 44.000 0.00 0.00 41.00 0.98
110 111 4.021016 CAGCTAGAGGGCTTATTCGGTATT 60.021 45.833 0.00 0.00 41.00 1.89
111 112 3.511934 CAGCTAGAGGGCTTATTCGGTAT 59.488 47.826 0.00 0.00 41.00 2.73
112 113 2.891580 CAGCTAGAGGGCTTATTCGGTA 59.108 50.000 0.00 0.00 41.00 4.02
113 114 1.689273 CAGCTAGAGGGCTTATTCGGT 59.311 52.381 0.00 0.00 41.00 4.69
114 115 1.001406 CCAGCTAGAGGGCTTATTCGG 59.999 57.143 0.00 0.00 41.00 4.30
115 116 1.964223 TCCAGCTAGAGGGCTTATTCG 59.036 52.381 0.00 0.00 41.00 3.34
116 117 2.969262 AGTCCAGCTAGAGGGCTTATTC 59.031 50.000 3.16 0.00 38.04 1.75
117 118 3.053359 AGTCCAGCTAGAGGGCTTATT 57.947 47.619 3.16 0.00 38.04 1.40
118 119 2.785357 AGTCCAGCTAGAGGGCTTAT 57.215 50.000 3.16 0.00 38.04 1.73
120 121 3.408251 AAGTCCAGCTAGAGGGCTT 57.592 52.632 13.85 13.85 45.81 4.35
121 122 0.252467 ACAAGTCCAGCTAGAGGGCT 60.252 55.000 3.16 3.16 44.57 5.19
122 123 0.176910 GACAAGTCCAGCTAGAGGGC 59.823 60.000 0.00 0.00 0.00 5.19
123 124 1.480137 CAGACAAGTCCAGCTAGAGGG 59.520 57.143 0.00 0.00 0.00 4.30
124 125 1.134848 GCAGACAAGTCCAGCTAGAGG 60.135 57.143 0.00 0.00 0.00 3.69
125 126 1.547820 TGCAGACAAGTCCAGCTAGAG 59.452 52.381 13.85 0.00 33.83 2.43
126 127 1.547820 CTGCAGACAAGTCCAGCTAGA 59.452 52.381 8.42 0.00 33.83 2.43
127 128 1.547820 TCTGCAGACAAGTCCAGCTAG 59.452 52.381 13.74 10.39 33.83 3.42
128 129 1.632589 TCTGCAGACAAGTCCAGCTA 58.367 50.000 13.74 0.00 33.83 3.32
129 130 0.761187 TTCTGCAGACAAGTCCAGCT 59.239 50.000 18.03 0.00 33.83 4.24
130 131 1.597742 TTTCTGCAGACAAGTCCAGC 58.402 50.000 18.03 7.93 0.00 4.85
131 132 2.031333 GCTTTTCTGCAGACAAGTCCAG 60.031 50.000 32.48 16.37 35.05 3.86
132 133 1.949525 GCTTTTCTGCAGACAAGTCCA 59.050 47.619 32.48 10.68 35.05 4.02
133 134 1.949525 TGCTTTTCTGCAGACAAGTCC 59.050 47.619 32.48 21.97 38.12 3.85
134 135 3.625938 CTTGCTTTTCTGCAGACAAGTC 58.374 45.455 32.48 26.17 44.27 3.01
135 136 2.223665 GCTTGCTTTTCTGCAGACAAGT 60.224 45.455 32.48 0.00 44.27 3.16
136 137 2.223641 TGCTTGCTTTTCTGCAGACAAG 60.224 45.455 30.00 30.00 44.27 3.16
137 138 1.750206 TGCTTGCTTTTCTGCAGACAA 59.250 42.857 18.03 15.91 44.27 3.18
138 139 1.391577 TGCTTGCTTTTCTGCAGACA 58.608 45.000 18.03 7.33 44.27 3.41
141 142 6.021022 AGAAAATCTGCTTGCTTTTCTGCAG 61.021 40.000 7.63 7.63 44.50 4.41
142 143 3.738830 AAATCTGCTTGCTTTTCTGCA 57.261 38.095 0.00 0.00 41.65 4.41
143 144 4.304939 AGAAAATCTGCTTGCTTTTCTGC 58.695 39.130 15.44 0.00 44.50 4.26
144 145 5.526115 TGAGAAAATCTGCTTGCTTTTCTG 58.474 37.500 18.90 0.00 45.48 3.02
146 147 5.981915 ACTTGAGAAAATCTGCTTGCTTTTC 59.018 36.000 9.21 9.21 39.63 2.29
147 148 5.910614 ACTTGAGAAAATCTGCTTGCTTTT 58.089 33.333 0.00 0.00 0.00 2.27
148 149 5.526506 ACTTGAGAAAATCTGCTTGCTTT 57.473 34.783 0.00 0.00 0.00 3.51
149 150 5.301298 AGAACTTGAGAAAATCTGCTTGCTT 59.699 36.000 0.00 0.00 0.00 3.91
150 151 4.826183 AGAACTTGAGAAAATCTGCTTGCT 59.174 37.500 0.00 0.00 0.00 3.91
151 152 5.118642 AGAACTTGAGAAAATCTGCTTGC 57.881 39.130 0.00 0.00 0.00 4.01
152 153 6.732154 TGAAGAACTTGAGAAAATCTGCTTG 58.268 36.000 0.00 0.00 0.00 4.01
153 154 6.949352 TGAAGAACTTGAGAAAATCTGCTT 57.051 33.333 0.00 0.00 0.00 3.91
154 155 6.713903 TCATGAAGAACTTGAGAAAATCTGCT 59.286 34.615 0.00 0.00 0.00 4.24
155 156 6.800892 GTCATGAAGAACTTGAGAAAATCTGC 59.199 38.462 0.00 0.00 34.20 4.26
156 157 7.174599 AGGTCATGAAGAACTTGAGAAAATCTG 59.825 37.037 0.00 0.00 43.38 2.90
157 158 7.174599 CAGGTCATGAAGAACTTGAGAAAATCT 59.825 37.037 0.00 0.00 43.38 2.40
158 159 7.303998 CAGGTCATGAAGAACTTGAGAAAATC 58.696 38.462 0.00 0.00 43.38 2.17
159 160 6.294397 GCAGGTCATGAAGAACTTGAGAAAAT 60.294 38.462 0.00 0.00 43.38 1.82
160 161 5.009010 GCAGGTCATGAAGAACTTGAGAAAA 59.991 40.000 0.00 0.00 43.38 2.29
161 162 4.516698 GCAGGTCATGAAGAACTTGAGAAA 59.483 41.667 0.00 0.00 43.38 2.52
162 163 4.067896 GCAGGTCATGAAGAACTTGAGAA 58.932 43.478 0.00 0.00 43.38 2.87
163 164 3.557898 GGCAGGTCATGAAGAACTTGAGA 60.558 47.826 0.00 0.00 43.38 3.27
164 165 2.746362 GGCAGGTCATGAAGAACTTGAG 59.254 50.000 0.00 0.00 43.38 3.02
165 166 2.373169 AGGCAGGTCATGAAGAACTTGA 59.627 45.455 0.00 0.00 43.38 3.02
166 167 2.787994 AGGCAGGTCATGAAGAACTTG 58.212 47.619 0.00 0.00 43.38 3.16
167 168 3.515602 AAGGCAGGTCATGAAGAACTT 57.484 42.857 0.00 0.00 43.38 2.66
169 170 3.319122 ACAAAAGGCAGGTCATGAAGAAC 59.681 43.478 0.00 0.00 0.00 3.01
170 171 3.565307 ACAAAAGGCAGGTCATGAAGAA 58.435 40.909 0.00 0.00 0.00 2.52
171 172 3.228188 ACAAAAGGCAGGTCATGAAGA 57.772 42.857 0.00 0.00 0.00 2.87
172 173 5.649782 ATTACAAAAGGCAGGTCATGAAG 57.350 39.130 0.00 0.00 0.00 3.02
173 174 5.538053 TGAATTACAAAAGGCAGGTCATGAA 59.462 36.000 0.00 0.00 0.00 2.57
174 175 5.076182 TGAATTACAAAAGGCAGGTCATGA 58.924 37.500 0.00 0.00 0.00 3.07
175 176 5.389859 TGAATTACAAAAGGCAGGTCATG 57.610 39.130 0.00 0.00 0.00 3.07
176 177 5.774690 TCTTGAATTACAAAAGGCAGGTCAT 59.225 36.000 0.00 0.00 38.08 3.06
177 178 5.136828 TCTTGAATTACAAAAGGCAGGTCA 58.863 37.500 0.00 0.00 38.08 4.02
178 179 5.705609 TCTTGAATTACAAAAGGCAGGTC 57.294 39.130 0.00 0.00 38.08 3.85
179 180 5.598417 ACTTCTTGAATTACAAAAGGCAGGT 59.402 36.000 0.00 0.00 38.08 4.00
180 181 5.922544 CACTTCTTGAATTACAAAAGGCAGG 59.077 40.000 0.00 0.00 38.08 4.85
181 182 6.738114 TCACTTCTTGAATTACAAAAGGCAG 58.262 36.000 0.00 0.00 38.08 4.85
182 183 6.707440 TCACTTCTTGAATTACAAAAGGCA 57.293 33.333 0.00 0.00 38.08 4.75
183 184 8.419076 TTTTCACTTCTTGAATTACAAAAGGC 57.581 30.769 0.00 0.00 43.99 4.35
184 185 9.801873 TCTTTTCACTTCTTGAATTACAAAAGG 57.198 29.630 0.00 0.00 43.99 3.11
187 188 9.567848 GTGTCTTTTCACTTCTTGAATTACAAA 57.432 29.630 0.00 0.00 43.99 2.83
188 189 8.956426 AGTGTCTTTTCACTTCTTGAATTACAA 58.044 29.630 0.00 0.00 44.92 2.41
189 190 8.506168 AGTGTCTTTTCACTTCTTGAATTACA 57.494 30.769 0.00 0.00 44.92 2.41
202 203 5.586643 AGAACAGAAGGAAGTGTCTTTTCAC 59.413 40.000 0.00 0.00 34.44 3.18
203 204 5.745227 AGAACAGAAGGAAGTGTCTTTTCA 58.255 37.500 0.00 0.00 34.44 2.69
204 205 7.971183 ATAGAACAGAAGGAAGTGTCTTTTC 57.029 36.000 0.00 0.00 32.91 2.29
205 206 9.660180 GATATAGAACAGAAGGAAGTGTCTTTT 57.340 33.333 0.00 0.00 0.00 2.27
206 207 8.816894 TGATATAGAACAGAAGGAAGTGTCTTT 58.183 33.333 0.00 0.00 0.00 2.52
207 208 8.367660 TGATATAGAACAGAAGGAAGTGTCTT 57.632 34.615 0.00 0.00 0.00 3.01
208 209 7.617723 ACTGATATAGAACAGAAGGAAGTGTCT 59.382 37.037 1.22 0.00 37.54 3.41
209 210 7.777095 ACTGATATAGAACAGAAGGAAGTGTC 58.223 38.462 1.22 0.00 37.54 3.67
210 211 7.617723 AGACTGATATAGAACAGAAGGAAGTGT 59.382 37.037 1.22 0.00 37.54 3.55
211 212 7.920151 CAGACTGATATAGAACAGAAGGAAGTG 59.080 40.741 1.22 0.00 37.54 3.16
212 213 7.836685 TCAGACTGATATAGAACAGAAGGAAGT 59.163 37.037 0.00 0.00 37.54 3.01
213 214 8.231692 TCAGACTGATATAGAACAGAAGGAAG 57.768 38.462 0.00 0.00 37.54 3.46
214 215 8.774546 ATCAGACTGATATAGAACAGAAGGAA 57.225 34.615 16.51 0.00 34.88 3.36
215 216 8.774546 AATCAGACTGATATAGAACAGAAGGA 57.225 34.615 18.24 0.00 35.76 3.36
216 217 9.829507 AAAATCAGACTGATATAGAACAGAAGG 57.170 33.333 18.24 0.00 35.76 3.46
218 219 9.605275 CCAAAATCAGACTGATATAGAACAGAA 57.395 33.333 18.24 0.00 35.76 3.02
219 220 8.762645 ACCAAAATCAGACTGATATAGAACAGA 58.237 33.333 18.24 0.00 35.76 3.41
220 221 8.954950 ACCAAAATCAGACTGATATAGAACAG 57.045 34.615 18.24 5.33 35.76 3.16
221 222 9.166173 CAACCAAAATCAGACTGATATAGAACA 57.834 33.333 18.24 0.00 35.76 3.18
222 223 8.616076 CCAACCAAAATCAGACTGATATAGAAC 58.384 37.037 18.24 0.00 35.76 3.01
223 224 7.775093 CCCAACCAAAATCAGACTGATATAGAA 59.225 37.037 18.24 0.00 35.76 2.10
224 225 7.282585 CCCAACCAAAATCAGACTGATATAGA 58.717 38.462 18.24 0.00 35.76 1.98
225 226 6.016777 GCCCAACCAAAATCAGACTGATATAG 60.017 42.308 18.24 10.40 35.76 1.31
226 227 5.827797 GCCCAACCAAAATCAGACTGATATA 59.172 40.000 18.24 0.00 35.76 0.86
227 228 4.646492 GCCCAACCAAAATCAGACTGATAT 59.354 41.667 18.24 7.98 35.76 1.63
228 229 4.016444 GCCCAACCAAAATCAGACTGATA 58.984 43.478 18.24 0.00 35.76 2.15
229 230 2.827921 GCCCAACCAAAATCAGACTGAT 59.172 45.455 12.37 12.37 39.09 2.90
230 231 2.238521 GCCCAACCAAAATCAGACTGA 58.761 47.619 7.80 7.80 0.00 3.41
231 232 1.962807 TGCCCAACCAAAATCAGACTG 59.037 47.619 0.00 0.00 0.00 3.51
232 233 1.963515 GTGCCCAACCAAAATCAGACT 59.036 47.619 0.00 0.00 0.00 3.24
233 234 1.686052 TGTGCCCAACCAAAATCAGAC 59.314 47.619 0.00 0.00 0.00 3.51
234 235 2.079170 TGTGCCCAACCAAAATCAGA 57.921 45.000 0.00 0.00 0.00 3.27
235 236 2.871633 GTTTGTGCCCAACCAAAATCAG 59.128 45.455 0.00 0.00 0.00 2.90
236 237 2.503356 AGTTTGTGCCCAACCAAAATCA 59.497 40.909 0.00 0.00 0.00 2.57
237 238 3.192541 AGTTTGTGCCCAACCAAAATC 57.807 42.857 0.00 0.00 0.00 2.17
238 239 3.070878 CCTAGTTTGTGCCCAACCAAAAT 59.929 43.478 0.00 0.00 0.00 1.82
239 240 2.432510 CCTAGTTTGTGCCCAACCAAAA 59.567 45.455 0.00 0.00 0.00 2.44
240 241 2.035632 CCTAGTTTGTGCCCAACCAAA 58.964 47.619 0.00 0.00 0.00 3.28
241 242 1.215673 TCCTAGTTTGTGCCCAACCAA 59.784 47.619 0.00 0.00 0.00 3.67
242 243 0.847373 TCCTAGTTTGTGCCCAACCA 59.153 50.000 0.00 0.00 0.00 3.67
243 244 2.215942 ATCCTAGTTTGTGCCCAACC 57.784 50.000 0.00 0.00 0.00 3.77
244 245 4.523083 TGATATCCTAGTTTGTGCCCAAC 58.477 43.478 0.00 0.00 0.00 3.77
245 246 4.853468 TGATATCCTAGTTTGTGCCCAA 57.147 40.909 0.00 0.00 0.00 4.12
246 247 6.508030 TTATGATATCCTAGTTTGTGCCCA 57.492 37.500 0.00 0.00 0.00 5.36
247 248 7.885399 AGATTTATGATATCCTAGTTTGTGCCC 59.115 37.037 0.00 0.00 0.00 5.36
248 249 8.854614 AGATTTATGATATCCTAGTTTGTGCC 57.145 34.615 0.00 0.00 0.00 5.01
268 269 8.746530 ACATCAAATGCAGTATCAGAAAGATTT 58.253 29.630 0.00 0.00 38.19 2.17
269 270 8.289939 ACATCAAATGCAGTATCAGAAAGATT 57.710 30.769 0.00 0.00 38.19 2.40
270 271 7.876936 ACATCAAATGCAGTATCAGAAAGAT 57.123 32.000 0.00 0.00 40.86 2.40
271 272 7.609146 AGAACATCAAATGCAGTATCAGAAAGA 59.391 33.333 0.00 0.00 0.00 2.52
272 273 7.696872 CAGAACATCAAATGCAGTATCAGAAAG 59.303 37.037 0.00 0.00 0.00 2.62
273 274 7.532571 CAGAACATCAAATGCAGTATCAGAAA 58.467 34.615 0.00 0.00 0.00 2.52
274 275 6.403964 GCAGAACATCAAATGCAGTATCAGAA 60.404 38.462 0.00 0.00 38.54 3.02
275 276 5.065602 GCAGAACATCAAATGCAGTATCAGA 59.934 40.000 0.00 0.00 38.54 3.27
276 277 5.066117 AGCAGAACATCAAATGCAGTATCAG 59.934 40.000 0.00 0.00 41.14 2.90
277 278 4.945543 AGCAGAACATCAAATGCAGTATCA 59.054 37.500 0.00 0.00 41.14 2.15
278 279 5.496133 AGCAGAACATCAAATGCAGTATC 57.504 39.130 0.00 0.00 41.14 2.24
279 280 4.337555 GGAGCAGAACATCAAATGCAGTAT 59.662 41.667 0.00 0.00 41.14 2.12
280 281 3.691118 GGAGCAGAACATCAAATGCAGTA 59.309 43.478 0.00 0.00 41.14 2.74
281 282 2.490903 GGAGCAGAACATCAAATGCAGT 59.509 45.455 0.00 0.00 41.14 4.40
282 283 2.490509 TGGAGCAGAACATCAAATGCAG 59.509 45.455 0.00 0.00 41.14 4.41
283 284 2.516906 TGGAGCAGAACATCAAATGCA 58.483 42.857 0.00 0.00 41.14 3.96
284 285 3.795623 ATGGAGCAGAACATCAAATGC 57.204 42.857 0.00 0.00 38.97 3.56
285 286 5.587443 TGTCTATGGAGCAGAACATCAAATG 59.413 40.000 0.00 0.00 0.00 2.32
286 287 5.748402 TGTCTATGGAGCAGAACATCAAAT 58.252 37.500 0.00 0.00 0.00 2.32
287 288 5.164620 TGTCTATGGAGCAGAACATCAAA 57.835 39.130 0.00 0.00 0.00 2.69
288 289 4.824479 TGTCTATGGAGCAGAACATCAA 57.176 40.909 0.00 0.00 0.00 2.57
289 290 5.121105 CAATGTCTATGGAGCAGAACATCA 58.879 41.667 0.00 0.00 0.00 3.07
290 291 5.121811 ACAATGTCTATGGAGCAGAACATC 58.878 41.667 0.00 0.00 0.00 3.06
291 292 5.108187 ACAATGTCTATGGAGCAGAACAT 57.892 39.130 0.00 0.00 0.00 2.71
292 293 4.558226 ACAATGTCTATGGAGCAGAACA 57.442 40.909 0.00 0.00 0.00 3.18
293 294 6.341316 TCTAACAATGTCTATGGAGCAGAAC 58.659 40.000 0.00 0.00 0.00 3.01
294 295 6.155221 ACTCTAACAATGTCTATGGAGCAGAA 59.845 38.462 0.00 0.00 0.00 3.02
295 296 5.658634 ACTCTAACAATGTCTATGGAGCAGA 59.341 40.000 0.00 0.00 0.00 4.26
296 297 5.911752 ACTCTAACAATGTCTATGGAGCAG 58.088 41.667 0.00 0.00 0.00 4.24
297 298 5.939764 ACTCTAACAATGTCTATGGAGCA 57.060 39.130 0.00 0.00 0.00 4.26
298 299 9.982651 TTATAACTCTAACAATGTCTATGGAGC 57.017 33.333 0.00 0.00 0.00 4.70
358 359 0.251916 TGCAGGAAACCCCTCATACG 59.748 55.000 0.00 0.00 45.60 3.06
433 438 9.914834 AATACCATGTTAGGAATAAGCAACTTA 57.085 29.630 0.00 0.00 0.00 2.24
574 580 3.934962 GAGATCGGGGGCTCCTGC 61.935 72.222 6.56 0.00 39.31 4.85
575 581 3.237741 GGAGATCGGGGGCTCCTG 61.238 72.222 4.49 4.49 45.72 3.86
578 584 1.906333 GAGAGGAGATCGGGGGCTC 60.906 68.421 0.00 0.00 0.00 4.70
579 585 2.200092 GAGAGGAGATCGGGGGCT 59.800 66.667 0.00 0.00 0.00 5.19
580 586 2.920384 GGAGAGGAGATCGGGGGC 60.920 72.222 0.00 0.00 0.00 5.80
581 587 1.532794 CTGGAGAGGAGATCGGGGG 60.533 68.421 0.00 0.00 0.00 5.40
781 869 2.765807 CCCTGGGCCGATCTGACT 60.766 66.667 0.00 0.00 0.00 3.41
819 907 1.462731 CCGGCTGGAGAGGAGATCAG 61.463 65.000 5.28 0.00 37.49 2.90
1153 1247 2.967599 TCATAAGCACGATCAGCAGT 57.032 45.000 9.51 0.46 0.00 4.40
1328 1422 0.905357 ACGGGTCCAGATCTCAAAGG 59.095 55.000 0.00 0.00 0.00 3.11
1338 1432 1.213013 CTCACGAAGACGGGTCCAG 59.787 63.158 0.00 0.00 44.00 3.86
1536 1630 4.250464 AGACGCGATGAAACTCCAAATTA 58.750 39.130 15.93 0.00 0.00 1.40
1678 1772 2.126596 CCAGCAAACCAGCACCACA 61.127 57.895 0.00 0.00 36.85 4.17
1750 1844 0.727970 GTAGCACTCGAGCGAGAAGA 59.272 55.000 24.81 5.82 44.53 2.87
1788 1882 3.074999 GCGACCTGAGCCTCCAGAG 62.075 68.421 0.00 0.00 36.29 3.35
2323 2420 3.648067 TCCTGGACAGAACAAGAGTCAAT 59.352 43.478 0.00 0.00 34.04 2.57
2417 2514 2.434428 CAGCAGAAGGAACATGAAGCT 58.566 47.619 0.00 0.00 0.00 3.74
2573 2670 6.722328 TGACACTCTAAAGAGACATCTCCTA 58.278 40.000 13.84 0.00 44.74 2.94
2629 2726 7.340487 AGACACTGACTCACTATGTGAATATGA 59.660 37.037 2.00 0.00 42.26 2.15
2722 2819 3.512329 TCAGGCTTAGAACCACGACAATA 59.488 43.478 0.00 0.00 0.00 1.90
2767 2864 0.041833 AGCTAGGACCTTGCCTCTCA 59.958 55.000 22.23 0.00 39.50 3.27
2868 2965 0.600255 CATAATCCACTCGACCGCCC 60.600 60.000 0.00 0.00 0.00 6.13
3181 3279 3.810623 ACTTACCCCAGGACATCCTTAA 58.189 45.455 0.00 0.00 46.09 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.