Multiple sequence alignment - TraesCS5A01G344000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G344000 chr5A 100.000 5248 0 0 1 5248 548508943 548503696 0.000000e+00 9692.0
1 TraesCS5A01G344000 chr5A 82.366 896 112 26 4386 5248 548657195 548658077 0.000000e+00 737.0
2 TraesCS5A01G344000 chr5A 92.593 54 4 0 790 843 548508101 548508048 1.570000e-10 78.7
3 TraesCS5A01G344000 chr5A 92.593 54 4 0 843 896 548508154 548508101 1.570000e-10 78.7
4 TraesCS5A01G344000 chr5D 94.572 3408 167 8 955 4352 434484360 434480961 0.000000e+00 5252.0
5 TraesCS5A01G344000 chr5D 90.102 788 74 3 1 785 428663896 428663110 0.000000e+00 1020.0
6 TraesCS5A01G344000 chr5D 89.822 786 78 2 1 785 546898912 546898128 0.000000e+00 1007.0
7 TraesCS5A01G344000 chr5D 89.286 784 77 5 1 784 10681346 10680570 0.000000e+00 976.0
8 TraesCS5A01G344000 chr5D 85.358 642 71 11 4622 5248 434480715 434480082 1.230000e-180 643.0
9 TraesCS5A01G344000 chr5D 83.662 710 85 18 4556 5248 434599745 434600440 1.590000e-179 640.0
10 TraesCS5A01G344000 chr5D 81.325 830 109 24 4428 5223 434566370 434567187 2.670000e-177 632.0
11 TraesCS5A01G344000 chr5D 81.030 854 104 25 4428 5248 434689301 434688473 1.240000e-175 627.0
12 TraesCS5A01G344000 chr5D 78.523 731 94 43 4556 5248 434548178 434548883 6.280000e-114 422.0
13 TraesCS5A01G344000 chr5D 86.136 339 38 5 4669 4999 434676036 434675699 1.800000e-94 357.0
14 TraesCS5A01G344000 chr5D 89.354 263 28 0 3961 4223 434599100 434599362 1.090000e-86 331.0
15 TraesCS5A01G344000 chr5B 94.116 3416 177 9 966 4359 527259122 527255709 0.000000e+00 5173.0
16 TraesCS5A01G344000 chr5B 89.808 2139 214 4 2087 4223 527488917 527491053 0.000000e+00 2739.0
17 TraesCS5A01G344000 chr5B 89.822 786 74 6 1 785 633127057 633127837 0.000000e+00 1003.0
18 TraesCS5A01G344000 chr5B 86.732 912 90 8 955 1859 527487906 527488793 0.000000e+00 985.0
19 TraesCS5A01G344000 chr5B 86.187 847 79 18 4416 5248 527255714 527254892 0.000000e+00 881.0
20 TraesCS5A01G344000 chr5B 82.551 831 97 25 4428 5223 527768701 527769518 0.000000e+00 688.0
21 TraesCS5A01G344000 chr5B 81.585 858 111 23 4403 5223 527600664 527601511 0.000000e+00 665.0
22 TraesCS5A01G344000 chr5B 81.206 862 104 34 4429 5248 527491374 527492219 4.430000e-180 641.0
23 TraesCS5A01G344000 chr5B 90.157 447 33 4 4813 5248 527248405 527247959 5.900000e-159 571.0
24 TraesCS5A01G344000 chr1D 90.355 788 69 4 4 785 364717284 364716498 0.000000e+00 1027.0
25 TraesCS5A01G344000 chr4D 90.076 786 72 4 1 785 72715562 72714782 0.000000e+00 1014.0
26 TraesCS5A01G344000 chr6D 89.682 785 80 1 1 785 23078728 23079511 0.000000e+00 1000.0
27 TraesCS5A01G344000 chr3D 89.633 791 74 4 1 785 338497860 338497072 0.000000e+00 1000.0
28 TraesCS5A01G344000 chr2D 89.427 785 75 6 1 784 508733696 508732919 0.000000e+00 983.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G344000 chr5A 548503696 548508943 5247 True 3283.133333 9692 95.062000 1 5248 3 chr5A.!!$R1 5247
1 TraesCS5A01G344000 chr5A 548657195 548658077 882 False 737.000000 737 82.366000 4386 5248 1 chr5A.!!$F1 862
2 TraesCS5A01G344000 chr5D 434480082 434484360 4278 True 2947.500000 5252 89.965000 955 5248 2 chr5D.!!$R6 4293
3 TraesCS5A01G344000 chr5D 428663110 428663896 786 True 1020.000000 1020 90.102000 1 785 1 chr5D.!!$R2 784
4 TraesCS5A01G344000 chr5D 546898128 546898912 784 True 1007.000000 1007 89.822000 1 785 1 chr5D.!!$R5 784
5 TraesCS5A01G344000 chr5D 10680570 10681346 776 True 976.000000 976 89.286000 1 784 1 chr5D.!!$R1 783
6 TraesCS5A01G344000 chr5D 434566370 434567187 817 False 632.000000 632 81.325000 4428 5223 1 chr5D.!!$F2 795
7 TraesCS5A01G344000 chr5D 434688473 434689301 828 True 627.000000 627 81.030000 4428 5248 1 chr5D.!!$R4 820
8 TraesCS5A01G344000 chr5D 434599100 434600440 1340 False 485.500000 640 86.508000 3961 5248 2 chr5D.!!$F3 1287
9 TraesCS5A01G344000 chr5D 434548178 434548883 705 False 422.000000 422 78.523000 4556 5248 1 chr5D.!!$F1 692
10 TraesCS5A01G344000 chr5B 527254892 527259122 4230 True 3027.000000 5173 90.151500 966 5248 2 chr5B.!!$R2 4282
11 TraesCS5A01G344000 chr5B 527487906 527492219 4313 False 1455.000000 2739 85.915333 955 5248 3 chr5B.!!$F4 4293
12 TraesCS5A01G344000 chr5B 633127057 633127837 780 False 1003.000000 1003 89.822000 1 785 1 chr5B.!!$F3 784
13 TraesCS5A01G344000 chr5B 527768701 527769518 817 False 688.000000 688 82.551000 4428 5223 1 chr5B.!!$F2 795
14 TraesCS5A01G344000 chr5B 527600664 527601511 847 False 665.000000 665 81.585000 4403 5223 1 chr5B.!!$F1 820
15 TraesCS5A01G344000 chr1D 364716498 364717284 786 True 1027.000000 1027 90.355000 4 785 1 chr1D.!!$R1 781
16 TraesCS5A01G344000 chr4D 72714782 72715562 780 True 1014.000000 1014 90.076000 1 785 1 chr4D.!!$R1 784
17 TraesCS5A01G344000 chr6D 23078728 23079511 783 False 1000.000000 1000 89.682000 1 785 1 chr6D.!!$F1 784
18 TraesCS5A01G344000 chr3D 338497072 338497860 788 True 1000.000000 1000 89.633000 1 785 1 chr3D.!!$R1 784
19 TraesCS5A01G344000 chr2D 508732919 508733696 777 True 983.000000 983 89.427000 1 784 1 chr2D.!!$R1 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 928 0.036671 GAAGTGGGGTCCGGTTACTG 60.037 60.000 0.00 0.0 0.00 2.74 F
910 931 0.107848 GTGGGGTCCGGTTACTGATG 60.108 60.000 0.00 0.0 0.00 3.07 F
1365 1393 0.116143 AGCTGAGGAAGGTCCAGAGT 59.884 55.000 0.00 0.0 39.61 3.24 F
2501 2552 1.135053 CATGGCCATGACAATTTCGCA 60.135 47.619 37.84 0.0 41.20 5.10 F
3573 3624 0.037605 GCTTGCTTTTGAGCCATGCT 60.038 50.000 0.00 0.0 43.88 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1786 0.458543 CTTGCTGGAGTACATCGCGT 60.459 55.000 5.77 0.00 0.00 6.01 R
2885 2936 1.135527 GTCACATTGCCACCATGGATG 59.864 52.381 21.47 13.73 40.96 3.51 R
3289 3340 2.206750 TGTTTCCGGACAAGAACTTCG 58.793 47.619 15.79 0.00 0.00 3.79 R
4022 4073 0.106868 TGAGTCTCGGCCTATTCGGA 60.107 55.000 0.00 0.00 33.16 4.55 R
5084 5418 0.035056 GCTTAGCACCACCATCACCT 60.035 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.251004 AGAGCACAAACCGAAGCTAAAAG 59.749 43.478 0.00 0.00 37.48 2.27
77 78 2.769663 AGAAGCACATACCCCATCGTTA 59.230 45.455 0.00 0.00 0.00 3.18
78 79 3.391296 AGAAGCACATACCCCATCGTTAT 59.609 43.478 0.00 0.00 0.00 1.89
89 90 4.141482 ACCCCATCGTTATAGCACTTGATT 60.141 41.667 0.00 0.00 0.00 2.57
133 134 1.081041 TTGTAGACACGCGACGCAT 60.081 52.632 21.35 0.00 0.00 4.73
207 209 0.321653 CTTTTGGGCTAGCACCGAGT 60.322 55.000 15.98 0.00 0.00 4.18
213 215 2.408241 GCTAGCACCGAGTCCGACT 61.408 63.158 10.63 0.00 38.22 4.18
216 218 0.393944 TAGCACCGAGTCCGACTGAT 60.394 55.000 5.57 0.00 38.22 2.90
268 270 2.027751 GTGTAGATCCGAGCGGCC 59.972 66.667 3.59 0.00 34.68 6.13
323 325 2.124570 CTGCCATGTCCTTCCGGG 60.125 66.667 0.00 0.00 0.00 5.73
388 390 2.962569 CGAGCTCAAGACCGACCA 59.037 61.111 15.40 0.00 0.00 4.02
405 407 1.227102 CAGATCCGCCCCAAATCCA 59.773 57.895 0.00 0.00 0.00 3.41
509 511 0.883153 CTGCACAGCTACAATGGCAA 59.117 50.000 0.00 0.00 0.00 4.52
587 608 4.880426 GATGGAGGGAGGGGGCGA 62.880 72.222 0.00 0.00 0.00 5.54
599 620 1.920351 AGGGGGCGAATAGAAAAAGGA 59.080 47.619 0.00 0.00 0.00 3.36
600 621 2.514160 AGGGGGCGAATAGAAAAAGGAT 59.486 45.455 0.00 0.00 0.00 3.24
601 622 2.623416 GGGGGCGAATAGAAAAAGGATG 59.377 50.000 0.00 0.00 0.00 3.51
602 623 3.288092 GGGGCGAATAGAAAAAGGATGT 58.712 45.455 0.00 0.00 0.00 3.06
669 690 2.280797 ATGCGTCCGTGTGCTGTT 60.281 55.556 0.00 0.00 0.00 3.16
685 706 2.417515 GCTGTTCGTTTCACCCCAAAAA 60.418 45.455 0.00 0.00 0.00 1.94
695 716 0.747852 ACCCCAAAAACGACGCAAAT 59.252 45.000 0.00 0.00 0.00 2.32
704 725 1.225376 ACGACGCAAATTTGAGCCGA 61.225 50.000 30.30 0.00 36.11 5.54
713 734 0.625849 ATTTGAGCCGAGGATGGGTT 59.374 50.000 0.00 0.00 40.53 4.11
720 741 0.322456 CCGAGGATGGGTTGAAAGCA 60.322 55.000 0.00 0.00 0.00 3.91
725 746 2.042162 AGGATGGGTTGAAAGCAGACAT 59.958 45.455 0.00 0.00 0.00 3.06
742 763 6.543831 AGCAGACATAAAACAGACAAAAGTCT 59.456 34.615 0.00 0.00 34.45 3.24
785 806 2.703512 CGTTTGGTTCGTTCGTTTTACG 59.296 45.455 0.00 0.00 44.19 3.18
786 807 3.028392 GTTTGGTTCGTTCGTTTTACGG 58.972 45.455 0.00 0.00 42.81 4.02
787 808 2.215907 TGGTTCGTTCGTTTTACGGA 57.784 45.000 0.00 0.00 42.81 4.69
788 809 1.857837 TGGTTCGTTCGTTTTACGGAC 59.142 47.619 0.61 0.61 46.19 4.79
793 814 1.860709 GTTCGTTTTACGGACGCATG 58.139 50.000 0.00 0.00 40.61 4.06
794 815 0.164217 TTCGTTTTACGGACGCATGC 59.836 50.000 7.91 7.91 42.81 4.06
795 816 1.576618 CGTTTTACGGACGCATGCG 60.577 57.895 36.79 36.79 46.59 4.73
796 817 1.225908 GTTTTACGGACGCATGCGG 60.226 57.895 39.95 26.21 45.25 5.69
797 818 1.374378 TTTTACGGACGCATGCGGA 60.374 52.632 39.95 19.04 45.25 5.54
798 819 1.628447 TTTTACGGACGCATGCGGAC 61.628 55.000 39.95 31.28 45.25 4.79
799 820 2.766875 TTTACGGACGCATGCGGACA 62.767 55.000 39.95 19.55 45.25 4.02
800 821 3.975083 TACGGACGCATGCGGACAC 62.975 63.158 39.95 26.77 45.25 3.67
803 824 2.885644 GACGCATGCGGACACGAT 60.886 61.111 39.95 20.45 44.60 3.73
804 825 3.142867 GACGCATGCGGACACGATG 62.143 63.158 39.95 13.16 44.60 3.84
805 826 3.928769 CGCATGCGGACACGATGG 61.929 66.667 31.99 0.00 44.60 3.51
806 827 3.576356 GCATGCGGACACGATGGG 61.576 66.667 0.00 0.00 44.60 4.00
807 828 2.125147 CATGCGGACACGATGGGT 60.125 61.111 0.00 0.00 44.60 4.51
808 829 2.173669 CATGCGGACACGATGGGTC 61.174 63.158 0.00 0.00 44.60 4.46
817 838 2.978824 CGATGGGTCGGTGGAGTT 59.021 61.111 0.00 0.00 44.00 3.01
818 839 1.447838 CGATGGGTCGGTGGAGTTG 60.448 63.158 0.00 0.00 44.00 3.16
819 840 1.078426 GATGGGTCGGTGGAGTTGG 60.078 63.158 0.00 0.00 0.00 3.77
820 841 3.268103 ATGGGTCGGTGGAGTTGGC 62.268 63.158 0.00 0.00 0.00 4.52
821 842 4.717313 GGGTCGGTGGAGTTGGCC 62.717 72.222 0.00 0.00 0.00 5.36
822 843 3.637273 GGTCGGTGGAGTTGGCCT 61.637 66.667 3.32 0.00 0.00 5.19
823 844 2.358737 GTCGGTGGAGTTGGCCTG 60.359 66.667 3.32 0.00 0.00 4.85
824 845 2.525629 TCGGTGGAGTTGGCCTGA 60.526 61.111 3.32 0.00 0.00 3.86
825 846 2.358737 CGGTGGAGTTGGCCTGAC 60.359 66.667 3.32 2.54 0.00 3.51
826 847 2.358737 GGTGGAGTTGGCCTGACG 60.359 66.667 3.32 0.00 0.00 4.35
827 848 2.426023 GTGGAGTTGGCCTGACGT 59.574 61.111 3.32 0.00 0.00 4.34
828 849 1.227853 GTGGAGTTGGCCTGACGTT 60.228 57.895 3.32 0.00 0.00 3.99
829 850 0.818040 GTGGAGTTGGCCTGACGTTT 60.818 55.000 3.32 0.00 0.00 3.60
830 851 0.534203 TGGAGTTGGCCTGACGTTTC 60.534 55.000 3.32 0.00 0.00 2.78
831 852 1.566018 GGAGTTGGCCTGACGTTTCG 61.566 60.000 3.32 0.00 0.00 3.46
832 853 1.566018 GAGTTGGCCTGACGTTTCGG 61.566 60.000 3.32 0.00 0.00 4.30
845 866 2.747686 TTCGGGAGAAGTGGGCAC 59.252 61.111 0.00 0.00 45.39 5.01
846 867 3.234630 TTCGGGAGAAGTGGGCACG 62.235 63.158 0.00 0.00 45.39 5.34
850 871 4.373116 GAGAAGTGGGCACGCGGA 62.373 66.667 12.47 0.00 36.20 5.54
851 872 4.681978 AGAAGTGGGCACGCGGAC 62.682 66.667 12.47 0.36 36.20 4.79
852 873 4.980805 GAAGTGGGCACGCGGACA 62.981 66.667 12.47 0.00 36.20 4.02
853 874 4.988598 AAGTGGGCACGCGGACAG 62.989 66.667 12.47 0.00 36.20 3.51
860 881 4.082523 CACGCGGACAGGATGGGT 62.083 66.667 12.47 0.00 43.62 4.51
861 882 3.771160 ACGCGGACAGGATGGGTC 61.771 66.667 12.47 0.00 43.62 4.46
862 883 4.873129 CGCGGACAGGATGGGTCG 62.873 72.222 0.00 0.00 43.62 4.79
863 884 4.530857 GCGGACAGGATGGGTCGG 62.531 72.222 0.00 0.00 43.62 4.79
864 885 3.075005 CGGACAGGATGGGTCGGT 61.075 66.667 0.00 0.00 43.62 4.69
865 886 2.584608 GGACAGGATGGGTCGGTG 59.415 66.667 0.00 0.00 43.62 4.94
866 887 2.584608 GACAGGATGGGTCGGTGG 59.415 66.667 0.00 0.00 43.62 4.61
867 888 1.987855 GACAGGATGGGTCGGTGGA 60.988 63.158 0.00 0.00 43.62 4.02
868 889 1.961180 GACAGGATGGGTCGGTGGAG 61.961 65.000 0.00 0.00 43.62 3.86
869 890 1.990060 CAGGATGGGTCGGTGGAGT 60.990 63.158 0.00 0.00 0.00 3.85
870 891 1.229529 AGGATGGGTCGGTGGAGTT 60.230 57.895 0.00 0.00 0.00 3.01
871 892 1.078426 GGATGGGTCGGTGGAGTTG 60.078 63.158 0.00 0.00 0.00 3.16
872 893 1.078426 GATGGGTCGGTGGAGTTGG 60.078 63.158 0.00 0.00 0.00 3.77
873 894 3.268103 ATGGGTCGGTGGAGTTGGC 62.268 63.158 0.00 0.00 0.00 4.52
874 895 4.717313 GGGTCGGTGGAGTTGGCC 62.717 72.222 0.00 0.00 0.00 5.36
875 896 3.637273 GGTCGGTGGAGTTGGCCT 61.637 66.667 3.32 0.00 0.00 5.19
876 897 2.358737 GTCGGTGGAGTTGGCCTG 60.359 66.667 3.32 0.00 0.00 4.85
877 898 2.525629 TCGGTGGAGTTGGCCTGA 60.526 61.111 3.32 0.00 0.00 3.86
878 899 2.358737 CGGTGGAGTTGGCCTGAC 60.359 66.667 3.32 2.54 0.00 3.51
879 900 2.358737 GGTGGAGTTGGCCTGACG 60.359 66.667 3.32 0.00 0.00 4.35
880 901 2.426023 GTGGAGTTGGCCTGACGT 59.574 61.111 3.32 0.00 0.00 4.34
881 902 1.227853 GTGGAGTTGGCCTGACGTT 60.228 57.895 3.32 0.00 0.00 3.99
882 903 0.818040 GTGGAGTTGGCCTGACGTTT 60.818 55.000 3.32 0.00 0.00 3.60
883 904 0.106918 TGGAGTTGGCCTGACGTTTT 60.107 50.000 3.32 0.00 0.00 2.43
884 905 0.310854 GGAGTTGGCCTGACGTTTTG 59.689 55.000 3.32 0.00 0.00 2.44
885 906 0.310854 GAGTTGGCCTGACGTTTTGG 59.689 55.000 3.32 0.00 0.00 3.28
886 907 1.106944 AGTTGGCCTGACGTTTTGGG 61.107 55.000 3.32 0.00 0.00 4.12
887 908 1.830408 TTGGCCTGACGTTTTGGGG 60.830 57.895 3.32 0.00 0.00 4.96
888 909 2.989253 GGCCTGACGTTTTGGGGG 60.989 66.667 0.00 0.00 0.00 5.40
889 910 2.114411 GCCTGACGTTTTGGGGGA 59.886 61.111 0.00 0.00 0.00 4.81
890 911 1.529713 GCCTGACGTTTTGGGGGAA 60.530 57.895 0.00 0.00 0.00 3.97
891 912 1.524008 GCCTGACGTTTTGGGGGAAG 61.524 60.000 0.00 0.00 0.00 3.46
892 913 0.179001 CCTGACGTTTTGGGGGAAGT 60.179 55.000 0.00 0.00 0.00 3.01
893 914 0.951558 CTGACGTTTTGGGGGAAGTG 59.048 55.000 0.00 0.00 0.00 3.16
894 915 0.466555 TGACGTTTTGGGGGAAGTGG 60.467 55.000 0.00 0.00 0.00 4.00
895 916 1.152631 ACGTTTTGGGGGAAGTGGG 60.153 57.895 0.00 0.00 0.00 4.61
896 917 1.906333 CGTTTTGGGGGAAGTGGGG 60.906 63.158 0.00 0.00 0.00 4.96
897 918 1.234820 GTTTTGGGGGAAGTGGGGT 59.765 57.895 0.00 0.00 0.00 4.95
898 919 0.830444 GTTTTGGGGGAAGTGGGGTC 60.830 60.000 0.00 0.00 0.00 4.46
899 920 2.026208 TTTTGGGGGAAGTGGGGTCC 62.026 60.000 0.00 0.00 0.00 4.46
903 924 3.254617 GGGAAGTGGGGTCCGGTT 61.255 66.667 0.00 0.00 35.86 4.44
904 925 1.919816 GGGAAGTGGGGTCCGGTTA 60.920 63.158 0.00 0.00 35.86 2.85
905 926 1.297689 GGAAGTGGGGTCCGGTTAC 59.702 63.158 0.00 0.00 0.00 2.50
906 927 1.196766 GGAAGTGGGGTCCGGTTACT 61.197 60.000 0.00 0.00 0.00 2.24
907 928 0.036671 GAAGTGGGGTCCGGTTACTG 60.037 60.000 0.00 0.00 0.00 2.74
908 929 0.472352 AAGTGGGGTCCGGTTACTGA 60.472 55.000 0.00 0.00 0.00 3.41
909 930 0.252558 AGTGGGGTCCGGTTACTGAT 60.253 55.000 0.00 0.00 0.00 2.90
910 931 0.107848 GTGGGGTCCGGTTACTGATG 60.108 60.000 0.00 0.00 0.00 3.07
911 932 1.153229 GGGGTCCGGTTACTGATGC 60.153 63.158 0.00 0.00 0.00 3.91
912 933 1.623542 GGGGTCCGGTTACTGATGCT 61.624 60.000 0.00 0.00 0.00 3.79
913 934 0.179081 GGGTCCGGTTACTGATGCTC 60.179 60.000 0.00 0.00 0.00 4.26
914 935 0.824759 GGTCCGGTTACTGATGCTCT 59.175 55.000 0.00 0.00 0.00 4.09
915 936 1.207329 GGTCCGGTTACTGATGCTCTT 59.793 52.381 0.00 0.00 0.00 2.85
916 937 2.271800 GTCCGGTTACTGATGCTCTTG 58.728 52.381 0.00 0.00 0.00 3.02
917 938 1.899814 TCCGGTTACTGATGCTCTTGT 59.100 47.619 0.00 0.00 0.00 3.16
918 939 2.094182 TCCGGTTACTGATGCTCTTGTC 60.094 50.000 0.00 0.00 0.00 3.18
919 940 1.920574 CGGTTACTGATGCTCTTGTCG 59.079 52.381 0.00 0.00 0.00 4.35
920 941 2.415491 CGGTTACTGATGCTCTTGTCGA 60.415 50.000 0.00 0.00 0.00 4.20
921 942 3.735208 CGGTTACTGATGCTCTTGTCGAT 60.735 47.826 0.00 0.00 0.00 3.59
922 943 4.184629 GGTTACTGATGCTCTTGTCGATT 58.815 43.478 0.00 0.00 0.00 3.34
923 944 4.033358 GGTTACTGATGCTCTTGTCGATTG 59.967 45.833 0.00 0.00 0.00 2.67
924 945 2.005451 ACTGATGCTCTTGTCGATTGC 58.995 47.619 0.00 0.00 0.00 3.56
925 946 2.004733 CTGATGCTCTTGTCGATTGCA 58.995 47.619 0.00 0.00 38.05 4.08
926 947 2.417586 CTGATGCTCTTGTCGATTGCAA 59.582 45.455 0.00 0.00 37.20 4.08
927 948 3.011818 TGATGCTCTTGTCGATTGCAAT 58.988 40.909 12.83 12.83 37.20 3.56
928 949 2.905959 TGCTCTTGTCGATTGCAATG 57.094 45.000 18.59 9.47 0.00 2.82
929 950 2.425539 TGCTCTTGTCGATTGCAATGA 58.574 42.857 18.59 11.72 0.00 2.57
930 951 3.011818 TGCTCTTGTCGATTGCAATGAT 58.988 40.909 18.59 0.00 0.00 2.45
931 952 4.190772 TGCTCTTGTCGATTGCAATGATA 58.809 39.130 18.59 10.05 0.00 2.15
932 953 4.271776 TGCTCTTGTCGATTGCAATGATAG 59.728 41.667 18.59 14.34 0.00 2.08
933 954 4.509230 GCTCTTGTCGATTGCAATGATAGA 59.491 41.667 18.59 17.01 0.00 1.98
934 955 5.557893 GCTCTTGTCGATTGCAATGATAGAC 60.558 44.000 18.59 18.82 32.07 2.59
935 956 5.664457 TCTTGTCGATTGCAATGATAGACT 58.336 37.500 18.59 0.00 32.49 3.24
936 957 5.750547 TCTTGTCGATTGCAATGATAGACTC 59.249 40.000 18.59 0.00 32.49 3.36
937 958 4.371786 TGTCGATTGCAATGATAGACTCC 58.628 43.478 18.59 0.00 32.49 3.85
938 959 3.743396 GTCGATTGCAATGATAGACTCCC 59.257 47.826 18.59 0.00 0.00 4.30
939 960 3.643320 TCGATTGCAATGATAGACTCCCT 59.357 43.478 18.59 0.00 0.00 4.20
940 961 3.993081 CGATTGCAATGATAGACTCCCTC 59.007 47.826 18.59 0.00 0.00 4.30
941 962 4.262377 CGATTGCAATGATAGACTCCCTCT 60.262 45.833 18.59 0.00 0.00 3.69
942 963 5.619220 GATTGCAATGATAGACTCCCTCTT 58.381 41.667 18.59 0.00 0.00 2.85
943 964 4.679373 TGCAATGATAGACTCCCTCTTC 57.321 45.455 0.00 0.00 0.00 2.87
944 965 4.033009 TGCAATGATAGACTCCCTCTTCA 58.967 43.478 0.00 0.00 0.00 3.02
945 966 4.141846 TGCAATGATAGACTCCCTCTTCAC 60.142 45.833 0.00 0.00 0.00 3.18
946 967 4.100808 GCAATGATAGACTCCCTCTTCACT 59.899 45.833 0.00 0.00 0.00 3.41
947 968 5.396213 GCAATGATAGACTCCCTCTTCACTT 60.396 44.000 0.00 0.00 0.00 3.16
948 969 6.279882 CAATGATAGACTCCCTCTTCACTTC 58.720 44.000 0.00 0.00 0.00 3.01
949 970 5.199982 TGATAGACTCCCTCTTCACTTCT 57.800 43.478 0.00 0.00 0.00 2.85
950 971 5.197451 TGATAGACTCCCTCTTCACTTCTC 58.803 45.833 0.00 0.00 0.00 2.87
951 972 3.825908 AGACTCCCTCTTCACTTCTCT 57.174 47.619 0.00 0.00 0.00 3.10
952 973 4.126520 AGACTCCCTCTTCACTTCTCTT 57.873 45.455 0.00 0.00 0.00 2.85
953 974 4.086457 AGACTCCCTCTTCACTTCTCTTC 58.914 47.826 0.00 0.00 0.00 2.87
954 975 3.829601 GACTCCCTCTTCACTTCTCTTCA 59.170 47.826 0.00 0.00 0.00 3.02
955 976 3.831911 ACTCCCTCTTCACTTCTCTTCAG 59.168 47.826 0.00 0.00 0.00 3.02
956 977 3.831911 CTCCCTCTTCACTTCTCTTCAGT 59.168 47.826 0.00 0.00 0.00 3.41
957 978 3.829601 TCCCTCTTCACTTCTCTTCAGTC 59.170 47.826 0.00 0.00 0.00 3.51
958 979 3.576118 CCCTCTTCACTTCTCTTCAGTCA 59.424 47.826 0.00 0.00 0.00 3.41
959 980 4.039730 CCCTCTTCACTTCTCTTCAGTCAA 59.960 45.833 0.00 0.00 0.00 3.18
960 981 4.987912 CCTCTTCACTTCTCTTCAGTCAAC 59.012 45.833 0.00 0.00 0.00 3.18
961 982 5.221422 CCTCTTCACTTCTCTTCAGTCAACT 60.221 44.000 0.00 0.00 0.00 3.16
962 983 5.595885 TCTTCACTTCTCTTCAGTCAACTG 58.404 41.667 3.69 3.69 45.08 3.16
963 984 5.127845 TCTTCACTTCTCTTCAGTCAACTGT 59.872 40.000 9.82 0.00 44.12 3.55
976 997 1.070134 TCAACTGTGTGGTGTAGAGCC 59.930 52.381 0.00 0.00 34.34 4.70
1365 1393 0.116143 AGCTGAGGAAGGTCCAGAGT 59.884 55.000 0.00 0.00 39.61 3.24
1447 1475 2.849162 TCCTCGGCATCCCCATCC 60.849 66.667 0.00 0.00 0.00 3.51
1448 1476 3.958860 CCTCGGCATCCCCATCCC 61.959 72.222 0.00 0.00 0.00 3.85
1449 1477 3.958860 CTCGGCATCCCCATCCCC 61.959 72.222 0.00 0.00 0.00 4.81
1563 1597 1.617850 GATCTCCTGTCGATGCTGGAT 59.382 52.381 2.70 0.00 36.21 3.41
1579 1613 1.758514 GATGAGGTGGAGGGCGAGA 60.759 63.158 0.00 0.00 0.00 4.04
1580 1614 1.306141 ATGAGGTGGAGGGCGAGAA 60.306 57.895 0.00 0.00 0.00 2.87
1794 1828 2.046285 CCCCAAAGACGCCATGGAC 61.046 63.158 18.40 5.97 36.27 4.02
1807 1844 2.355197 CCATGGACGTTGTTGCTGATA 58.645 47.619 5.56 0.00 0.00 2.15
1871 1909 2.206576 AAGAGGTGTGCATCTTTCCC 57.793 50.000 0.00 0.00 42.29 3.97
1886 1924 6.631962 CATCTTTCCCTACTCTTTACTTCGT 58.368 40.000 0.00 0.00 0.00 3.85
1892 1930 4.271661 CCTACTCTTTACTTCGTCTCCCT 58.728 47.826 0.00 0.00 0.00 4.20
2439 2490 3.536917 CTACGGGGGAGCGATGCA 61.537 66.667 0.00 0.00 0.00 3.96
2501 2552 1.135053 CATGGCCATGACAATTTCGCA 60.135 47.619 37.84 0.00 41.20 5.10
2633 2684 2.167693 TGTTATCAGGAGGTGGTTAGCG 59.832 50.000 0.00 0.00 0.00 4.26
2731 2782 4.937620 CCGGAATATCATACAGTCCATTGG 59.062 45.833 0.00 0.00 0.00 3.16
2732 2783 4.393062 CGGAATATCATACAGTCCATTGGC 59.607 45.833 0.00 0.00 0.00 4.52
2885 2936 1.780503 ATAATGCCTGCCACCTTTCC 58.219 50.000 0.00 0.00 0.00 3.13
2951 3002 5.008415 GGATTTATCTCGTGTTCGGTCTCTA 59.992 44.000 0.00 0.00 37.69 2.43
2996 3047 8.609176 GGTGATGCTATTTCTTATGTTCGTAAA 58.391 33.333 0.00 0.00 0.00 2.01
3143 3194 2.012237 CAGCATCGATGGACTGCAC 58.988 57.895 26.00 8.08 38.37 4.57
3186 3237 8.848474 TTTAAGGAGAACCAAGATAAAGACAG 57.152 34.615 0.00 0.00 38.94 3.51
3289 3340 3.060070 GCAAACAAGATGAGCAAAGCAAC 60.060 43.478 0.00 0.00 0.00 4.17
3350 3401 2.948979 AGCTGGATTTGTCACAAACGAA 59.051 40.909 4.73 0.00 35.69 3.85
3470 3521 2.097825 CTTTCCAAGGCCATTCAGGAG 58.902 52.381 5.01 0.00 41.22 3.69
3573 3624 0.037605 GCTTGCTTTTGAGCCATGCT 60.038 50.000 0.00 0.00 43.88 3.79
3638 3689 0.686769 AGCTACTCCAGTTACCCCCG 60.687 60.000 0.00 0.00 0.00 5.73
3769 3820 2.934553 TGATTGCGAATGAGCTTGAGAG 59.065 45.455 0.00 0.00 38.13 3.20
3806 3857 3.064324 GCATTCCCAAGCCTGCGT 61.064 61.111 0.00 0.00 0.00 5.24
3881 3932 0.603975 GAGCTCTGCCGAACCTTGTT 60.604 55.000 6.43 0.00 0.00 2.83
3956 4007 3.242867 ACACCTCAGACATCTCAAGGAA 58.757 45.455 11.99 0.00 32.77 3.36
4022 4073 2.036346 GGAGCAAGCAACAAAGAACCAT 59.964 45.455 0.00 0.00 0.00 3.55
4079 4130 1.469335 TTCGAGTGGAAAGCGAGGGT 61.469 55.000 0.00 0.00 35.31 4.34
4096 4147 0.618981 GGTCCGGGGAATGAAGAAGT 59.381 55.000 0.00 0.00 0.00 3.01
4112 4163 2.147150 GAAGTTTCAGCTGTGAGGGAC 58.853 52.381 14.67 4.90 32.98 4.46
4223 4274 1.879380 CGGCTTCAAGTGATTGTCCAA 59.121 47.619 0.00 0.00 0.00 3.53
4314 4525 9.491442 GTGATGATTCAGCTTGGATACCCAAAC 62.491 44.444 3.27 0.00 41.25 2.93
4323 4534 3.189606 TGGATACCCAAACCAGAGACAT 58.810 45.455 0.00 0.00 40.09 3.06
4324 4535 3.054434 TGGATACCCAAACCAGAGACATG 60.054 47.826 0.00 0.00 40.09 3.21
4333 4544 6.183360 CCCAAACCAGAGACATGATAAATGAC 60.183 42.308 0.00 0.00 0.00 3.06
4352 4563 3.250744 GACGAGCTGCTGTTGTATTGTA 58.749 45.455 7.01 0.00 0.00 2.41
4353 4564 2.993899 ACGAGCTGCTGTTGTATTGTAC 59.006 45.455 7.01 0.00 0.00 2.90
4354 4565 2.028045 CGAGCTGCTGTTGTATTGTACG 59.972 50.000 7.01 0.00 0.00 3.67
4355 4566 2.346803 AGCTGCTGTTGTATTGTACGG 58.653 47.619 0.00 0.00 0.00 4.02
4356 4567 2.073816 GCTGCTGTTGTATTGTACGGT 58.926 47.619 0.00 0.00 0.00 4.83
4357 4568 2.159707 GCTGCTGTTGTATTGTACGGTG 60.160 50.000 0.00 0.00 0.00 4.94
4358 4569 3.064207 CTGCTGTTGTATTGTACGGTGT 58.936 45.455 0.00 0.00 0.00 4.16
4359 4570 2.803386 TGCTGTTGTATTGTACGGTGTG 59.197 45.455 0.00 0.00 0.00 3.82
4360 4571 2.803956 GCTGTTGTATTGTACGGTGTGT 59.196 45.455 0.00 0.00 0.00 3.72
4361 4572 3.989167 GCTGTTGTATTGTACGGTGTGTA 59.011 43.478 0.00 0.00 0.00 2.90
4362 4573 4.090930 GCTGTTGTATTGTACGGTGTGTAG 59.909 45.833 0.00 0.00 32.51 2.74
4363 4574 5.199024 TGTTGTATTGTACGGTGTGTAGT 57.801 39.130 0.00 0.00 32.51 2.73
4364 4575 5.599732 TGTTGTATTGTACGGTGTGTAGTT 58.400 37.500 0.00 0.00 32.51 2.24
4365 4576 6.047870 TGTTGTATTGTACGGTGTGTAGTTT 58.952 36.000 0.00 0.00 32.51 2.66
4366 4577 6.538021 TGTTGTATTGTACGGTGTGTAGTTTT 59.462 34.615 0.00 0.00 32.51 2.43
4367 4578 7.708322 TGTTGTATTGTACGGTGTGTAGTTTTA 59.292 33.333 0.00 0.00 32.51 1.52
4368 4579 7.636259 TGTATTGTACGGTGTGTAGTTTTAC 57.364 36.000 0.00 0.00 32.51 2.01
4369 4580 7.432869 TGTATTGTACGGTGTGTAGTTTTACT 58.567 34.615 0.00 0.00 32.51 2.24
4370 4581 7.925483 TGTATTGTACGGTGTGTAGTTTTACTT 59.075 33.333 0.00 0.00 32.51 2.24
4371 4582 6.826893 TTGTACGGTGTGTAGTTTTACTTC 57.173 37.500 0.00 0.00 32.51 3.01
4374 4585 4.374399 ACGGTGTGTAGTTTTACTTCTGG 58.626 43.478 0.00 0.00 0.00 3.86
4376 4587 3.185797 GGTGTGTAGTTTTACTTCTGGCG 59.814 47.826 0.00 0.00 0.00 5.69
4382 4593 3.805207 AGTTTTACTTCTGGCGACAAGT 58.195 40.909 0.46 0.46 42.06 3.16
4384 4595 4.638865 AGTTTTACTTCTGGCGACAAGTTT 59.361 37.500 0.00 0.00 42.06 2.66
4412 4623 9.771534 GTCTCCTTATTTTCTTGTCTATATGCT 57.228 33.333 0.00 0.00 0.00 3.79
4488 4710 0.413037 TTTCCATGCCCAATCCACCT 59.587 50.000 0.00 0.00 0.00 4.00
4578 4818 3.815401 TCTTCAGAAGCTAACAAACAGCC 59.185 43.478 5.15 0.00 39.99 4.85
4580 4820 3.141398 TCAGAAGCTAACAAACAGCCAG 58.859 45.455 0.00 0.00 39.99 4.85
4611 4859 1.632018 GCCCTATGCCCACCACACTA 61.632 60.000 0.00 0.00 0.00 2.74
4625 4914 1.195448 CACACTACCTTCAAAGCTGCG 59.805 52.381 0.00 0.00 0.00 5.18
4772 5069 0.833949 GAACTCCTCCTGGGACATCC 59.166 60.000 0.00 0.00 39.58 3.51
4964 5273 1.669115 CTCCCGATGGCCGCTATTG 60.669 63.158 0.00 0.00 36.84 1.90
5033 5356 7.201911 CCATGTTTGGTTTACTCCTCTTTCTTT 60.202 37.037 0.00 0.00 38.30 2.52
5084 5418 4.005650 GTGCTTTCTGGATGAACTGATGA 58.994 43.478 0.00 0.00 33.88 2.92
5117 5470 7.355778 GTGGTGCTAAGCTGATGAATTTATAC 58.644 38.462 0.00 0.00 0.00 1.47
5119 5472 7.227314 TGGTGCTAAGCTGATGAATTTATACAG 59.773 37.037 0.00 0.00 0.00 2.74
5121 5474 8.997323 GTGCTAAGCTGATGAATTTATACAGAT 58.003 33.333 11.31 4.97 0.00 2.90
5125 5484 8.618702 AAGCTGATGAATTTATACAGATGAGG 57.381 34.615 11.31 0.00 0.00 3.86
5127 5486 6.373774 GCTGATGAATTTATACAGATGAGGGG 59.626 42.308 11.31 0.00 0.00 4.79
5146 5506 0.537653 GGGAGGAAGAGAAGGGAACG 59.462 60.000 0.00 0.00 0.00 3.95
5147 5507 0.108089 GGAGGAAGAGAAGGGAACGC 60.108 60.000 0.00 0.00 0.00 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.209175 CTAGATTTGACTAGTTGTGCTTACTTT 57.791 33.333 0.00 0.00 36.20 2.66
15 16 5.872070 GCTCTAGATTTGACTAGTTGTGCTT 59.128 40.000 0.00 0.00 40.26 3.91
57 58 2.038387 AACGATGGGGTATGTGCTTC 57.962 50.000 0.00 0.00 0.00 3.86
77 78 5.133221 GGATGGGTGTTAATCAAGTGCTAT 58.867 41.667 0.00 0.00 0.00 2.97
78 79 4.523083 GGATGGGTGTTAATCAAGTGCTA 58.477 43.478 0.00 0.00 0.00 3.49
103 104 1.545136 TGTCTACAACGCCGGAACATA 59.455 47.619 5.05 0.00 0.00 2.29
128 129 1.076332 GCGTAAAGAAGGTCATGCGT 58.924 50.000 0.00 0.00 0.00 5.24
133 134 1.414919 ACCACTGCGTAAAGAAGGTCA 59.585 47.619 0.00 0.00 0.00 4.02
213 215 2.742774 CAGATACACGAATGGCGATCA 58.257 47.619 0.00 0.00 44.57 2.92
216 218 0.529773 GGCAGATACACGAATGGCGA 60.530 55.000 0.00 0.00 44.57 5.54
246 248 1.819288 CCGCTCGGATCTACACCATAT 59.181 52.381 1.35 0.00 37.50 1.78
247 249 1.244816 CCGCTCGGATCTACACCATA 58.755 55.000 1.35 0.00 37.50 2.74
369 371 2.258591 GTCGGTCTTGAGCTCGCA 59.741 61.111 9.64 0.00 0.00 5.10
388 390 1.533711 CTGGATTTGGGGCGGATCT 59.466 57.895 0.00 0.00 0.00 2.75
455 457 2.609610 CCAACCCCTTCCCCTCGA 60.610 66.667 0.00 0.00 0.00 4.04
572 592 2.965226 CTATTCGCCCCCTCCCTCCA 62.965 65.000 0.00 0.00 0.00 3.86
587 608 5.892348 ACACAGGGACATCCTTTTTCTATT 58.108 37.500 0.00 0.00 45.47 1.73
599 620 1.671742 GTCGGTGACACAGGGACAT 59.328 57.895 8.08 0.00 32.09 3.06
600 621 2.852180 CGTCGGTGACACAGGGACA 61.852 63.158 18.00 0.00 32.09 4.02
601 622 2.049433 CGTCGGTGACACAGGGAC 60.049 66.667 8.08 10.19 32.09 4.46
602 623 3.299977 CCGTCGGTGACACAGGGA 61.300 66.667 8.08 0.00 32.09 4.20
651 672 2.227968 GAACAGCACACGGACGCATC 62.228 60.000 0.00 0.00 0.00 3.91
652 673 2.280797 AACAGCACACGGACGCAT 60.281 55.556 0.00 0.00 0.00 4.73
653 674 2.964925 GAACAGCACACGGACGCA 60.965 61.111 0.00 0.00 0.00 5.24
661 682 1.098712 GGGGTGAAACGAACAGCACA 61.099 55.000 0.00 0.00 38.74 4.57
685 706 1.206578 CGGCTCAAATTTGCGTCGT 59.793 52.632 23.16 0.00 36.39 4.34
695 716 0.322456 CAACCCATCCTCGGCTCAAA 60.322 55.000 0.00 0.00 0.00 2.69
704 725 1.425066 TGTCTGCTTTCAACCCATCCT 59.575 47.619 0.00 0.00 0.00 3.24
713 734 6.691754 TTGTCTGTTTTATGTCTGCTTTCA 57.308 33.333 0.00 0.00 0.00 2.69
763 784 3.541129 CGTAAAACGAACGAACCAAACGA 60.541 43.478 0.14 0.00 46.05 3.85
786 807 2.885644 ATCGTGTCCGCATGCGTC 60.886 61.111 35.55 27.22 37.81 5.19
787 808 3.188100 CATCGTGTCCGCATGCGT 61.188 61.111 35.55 15.17 37.81 5.24
788 809 3.928769 CCATCGTGTCCGCATGCG 61.929 66.667 32.60 32.60 39.44 4.73
789 810 3.576356 CCCATCGTGTCCGCATGC 61.576 66.667 7.91 7.91 0.00 4.06
790 811 2.125147 ACCCATCGTGTCCGCATG 60.125 61.111 0.00 0.00 0.00 4.06
791 812 2.186903 GACCCATCGTGTCCGCAT 59.813 61.111 0.00 0.00 0.00 4.73
792 813 4.429212 CGACCCATCGTGTCCGCA 62.429 66.667 0.00 0.00 43.66 5.69
801 822 1.078426 CCAACTCCACCGACCCATC 60.078 63.158 0.00 0.00 0.00 3.51
802 823 3.077907 CCAACTCCACCGACCCAT 58.922 61.111 0.00 0.00 0.00 4.00
803 824 3.948719 GCCAACTCCACCGACCCA 61.949 66.667 0.00 0.00 0.00 4.51
804 825 4.717313 GGCCAACTCCACCGACCC 62.717 72.222 0.00 0.00 0.00 4.46
805 826 3.637273 AGGCCAACTCCACCGACC 61.637 66.667 5.01 0.00 0.00 4.79
806 827 2.358737 CAGGCCAACTCCACCGAC 60.359 66.667 5.01 0.00 0.00 4.79
807 828 2.525629 TCAGGCCAACTCCACCGA 60.526 61.111 5.01 0.00 0.00 4.69
808 829 2.358737 GTCAGGCCAACTCCACCG 60.359 66.667 5.01 0.00 0.00 4.94
809 830 2.358737 CGTCAGGCCAACTCCACC 60.359 66.667 5.01 0.00 0.00 4.61
810 831 0.818040 AAACGTCAGGCCAACTCCAC 60.818 55.000 5.01 0.00 0.00 4.02
811 832 0.534203 GAAACGTCAGGCCAACTCCA 60.534 55.000 5.01 0.00 0.00 3.86
812 833 1.566018 CGAAACGTCAGGCCAACTCC 61.566 60.000 5.01 0.00 0.00 3.85
813 834 1.566018 CCGAAACGTCAGGCCAACTC 61.566 60.000 5.01 0.00 0.00 3.01
814 835 1.597027 CCGAAACGTCAGGCCAACT 60.597 57.895 5.01 0.00 0.00 3.16
815 836 2.613506 CCCGAAACGTCAGGCCAAC 61.614 63.158 5.01 0.99 0.00 3.77
816 837 2.281208 CCCGAAACGTCAGGCCAA 60.281 61.111 5.01 0.00 0.00 4.52
817 838 3.234630 CTCCCGAAACGTCAGGCCA 62.235 63.158 5.01 0.00 0.00 5.36
818 839 2.434359 CTCCCGAAACGTCAGGCC 60.434 66.667 0.00 0.00 0.00 5.19
819 840 1.005394 TTCTCCCGAAACGTCAGGC 60.005 57.895 0.00 0.00 0.00 4.85
820 841 0.317479 ACTTCTCCCGAAACGTCAGG 59.683 55.000 0.00 0.00 0.00 3.86
821 842 1.419374 CACTTCTCCCGAAACGTCAG 58.581 55.000 0.00 0.00 0.00 3.51
822 843 0.032952 CCACTTCTCCCGAAACGTCA 59.967 55.000 0.00 0.00 0.00 4.35
823 844 0.669625 CCCACTTCTCCCGAAACGTC 60.670 60.000 0.00 0.00 0.00 4.34
824 845 1.370064 CCCACTTCTCCCGAAACGT 59.630 57.895 0.00 0.00 0.00 3.99
825 846 2.033194 GCCCACTTCTCCCGAAACG 61.033 63.158 0.00 0.00 0.00 3.60
826 847 1.072505 TGCCCACTTCTCCCGAAAC 59.927 57.895 0.00 0.00 0.00 2.78
827 848 1.072505 GTGCCCACTTCTCCCGAAA 59.927 57.895 0.00 0.00 0.00 3.46
828 849 2.747686 GTGCCCACTTCTCCCGAA 59.252 61.111 0.00 0.00 0.00 4.30
829 850 3.691342 CGTGCCCACTTCTCCCGA 61.691 66.667 0.00 0.00 0.00 5.14
833 854 4.373116 TCCGCGTGCCCACTTCTC 62.373 66.667 4.92 0.00 0.00 2.87
834 855 4.681978 GTCCGCGTGCCCACTTCT 62.682 66.667 4.92 0.00 0.00 2.85
835 856 4.980805 TGTCCGCGTGCCCACTTC 62.981 66.667 4.92 0.00 0.00 3.01
836 857 4.988598 CTGTCCGCGTGCCCACTT 62.989 66.667 4.92 0.00 0.00 3.16
843 864 4.082523 ACCCATCCTGTCCGCGTG 62.083 66.667 4.92 0.00 0.00 5.34
844 865 3.771160 GACCCATCCTGTCCGCGT 61.771 66.667 4.92 0.00 0.00 6.01
845 866 4.873129 CGACCCATCCTGTCCGCG 62.873 72.222 0.00 0.00 0.00 6.46
846 867 4.530857 CCGACCCATCCTGTCCGC 62.531 72.222 0.00 0.00 0.00 5.54
847 868 3.075005 ACCGACCCATCCTGTCCG 61.075 66.667 0.00 0.00 0.00 4.79
848 869 2.584608 CACCGACCCATCCTGTCC 59.415 66.667 0.00 0.00 0.00 4.02
849 870 1.961180 CTCCACCGACCCATCCTGTC 61.961 65.000 0.00 0.00 0.00 3.51
850 871 1.990060 CTCCACCGACCCATCCTGT 60.990 63.158 0.00 0.00 0.00 4.00
851 872 1.553690 AACTCCACCGACCCATCCTG 61.554 60.000 0.00 0.00 0.00 3.86
852 873 1.229529 AACTCCACCGACCCATCCT 60.230 57.895 0.00 0.00 0.00 3.24
853 874 1.078426 CAACTCCACCGACCCATCC 60.078 63.158 0.00 0.00 0.00 3.51
854 875 1.078426 CCAACTCCACCGACCCATC 60.078 63.158 0.00 0.00 0.00 3.51
855 876 3.077907 CCAACTCCACCGACCCAT 58.922 61.111 0.00 0.00 0.00 4.00
856 877 3.948719 GCCAACTCCACCGACCCA 61.949 66.667 0.00 0.00 0.00 4.51
857 878 4.717313 GGCCAACTCCACCGACCC 62.717 72.222 0.00 0.00 0.00 4.46
858 879 3.637273 AGGCCAACTCCACCGACC 61.637 66.667 5.01 0.00 0.00 4.79
859 880 2.358737 CAGGCCAACTCCACCGAC 60.359 66.667 5.01 0.00 0.00 4.79
860 881 2.525629 TCAGGCCAACTCCACCGA 60.526 61.111 5.01 0.00 0.00 4.69
861 882 2.358737 GTCAGGCCAACTCCACCG 60.359 66.667 5.01 0.00 0.00 4.94
862 883 2.358737 CGTCAGGCCAACTCCACC 60.359 66.667 5.01 0.00 0.00 4.61
863 884 0.818040 AAACGTCAGGCCAACTCCAC 60.818 55.000 5.01 0.00 0.00 4.02
864 885 0.106918 AAAACGTCAGGCCAACTCCA 60.107 50.000 5.01 0.00 0.00 3.86
865 886 0.310854 CAAAACGTCAGGCCAACTCC 59.689 55.000 5.01 0.00 0.00 3.85
866 887 0.310854 CCAAAACGTCAGGCCAACTC 59.689 55.000 5.01 0.00 0.00 3.01
867 888 1.106944 CCCAAAACGTCAGGCCAACT 61.107 55.000 5.01 0.00 0.00 3.16
868 889 1.362355 CCCAAAACGTCAGGCCAAC 59.638 57.895 5.01 0.99 0.00 3.77
869 890 1.830408 CCCCAAAACGTCAGGCCAA 60.830 57.895 5.01 0.00 0.00 4.52
870 891 2.203422 CCCCAAAACGTCAGGCCA 60.203 61.111 5.01 0.00 0.00 5.36
871 892 2.987355 TTCCCCCAAAACGTCAGGCC 62.987 60.000 0.00 0.00 0.00 5.19
872 893 1.524008 CTTCCCCCAAAACGTCAGGC 61.524 60.000 0.00 0.00 0.00 4.85
873 894 0.179001 ACTTCCCCCAAAACGTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
874 895 0.951558 CACTTCCCCCAAAACGTCAG 59.048 55.000 0.00 0.00 0.00 3.51
875 896 0.466555 CCACTTCCCCCAAAACGTCA 60.467 55.000 0.00 0.00 0.00 4.35
876 897 1.176619 CCCACTTCCCCCAAAACGTC 61.177 60.000 0.00 0.00 0.00 4.34
877 898 1.152631 CCCACTTCCCCCAAAACGT 60.153 57.895 0.00 0.00 0.00 3.99
878 899 1.906333 CCCCACTTCCCCCAAAACG 60.906 63.158 0.00 0.00 0.00 3.60
879 900 0.830444 GACCCCACTTCCCCCAAAAC 60.830 60.000 0.00 0.00 0.00 2.43
880 901 1.544703 GACCCCACTTCCCCCAAAA 59.455 57.895 0.00 0.00 0.00 2.44
881 902 2.475172 GGACCCCACTTCCCCCAAA 61.475 63.158 0.00 0.00 0.00 3.28
882 903 2.861974 GGACCCCACTTCCCCCAA 60.862 66.667 0.00 0.00 0.00 4.12
886 907 1.919816 TAACCGGACCCCACTTCCC 60.920 63.158 9.46 0.00 0.00 3.97
887 908 1.196766 AGTAACCGGACCCCACTTCC 61.197 60.000 9.46 0.00 0.00 3.46
888 909 0.036671 CAGTAACCGGACCCCACTTC 60.037 60.000 9.46 0.00 0.00 3.01
889 910 0.472352 TCAGTAACCGGACCCCACTT 60.472 55.000 9.46 0.00 0.00 3.16
890 911 0.252558 ATCAGTAACCGGACCCCACT 60.253 55.000 9.46 0.00 0.00 4.00
891 912 0.107848 CATCAGTAACCGGACCCCAC 60.108 60.000 9.46 0.00 0.00 4.61
892 913 1.906105 GCATCAGTAACCGGACCCCA 61.906 60.000 9.46 0.00 0.00 4.96
893 914 1.153229 GCATCAGTAACCGGACCCC 60.153 63.158 9.46 0.00 0.00 4.95
894 915 0.179081 GAGCATCAGTAACCGGACCC 60.179 60.000 9.46 0.00 33.17 4.46
895 916 0.824759 AGAGCATCAGTAACCGGACC 59.175 55.000 9.46 0.00 37.82 4.46
896 917 2.271800 CAAGAGCATCAGTAACCGGAC 58.728 52.381 9.46 0.00 37.82 4.79
897 918 1.899814 ACAAGAGCATCAGTAACCGGA 59.100 47.619 9.46 0.00 37.82 5.14
898 919 2.271800 GACAAGAGCATCAGTAACCGG 58.728 52.381 0.00 0.00 37.82 5.28
899 920 1.920574 CGACAAGAGCATCAGTAACCG 59.079 52.381 0.00 0.00 37.82 4.44
900 921 3.232213 TCGACAAGAGCATCAGTAACC 57.768 47.619 0.00 0.00 37.82 2.85
901 922 4.493220 GCAATCGACAAGAGCATCAGTAAC 60.493 45.833 0.00 0.00 37.82 2.50
902 923 3.618594 GCAATCGACAAGAGCATCAGTAA 59.381 43.478 0.00 0.00 37.82 2.24
903 924 3.190079 GCAATCGACAAGAGCATCAGTA 58.810 45.455 0.00 0.00 37.82 2.74
904 925 2.005451 GCAATCGACAAGAGCATCAGT 58.995 47.619 0.00 0.00 37.82 3.41
905 926 2.004733 TGCAATCGACAAGAGCATCAG 58.995 47.619 0.00 0.00 37.82 2.90
906 927 2.097680 TGCAATCGACAAGAGCATCA 57.902 45.000 0.00 0.00 37.82 3.07
907 928 3.064408 TCATTGCAATCGACAAGAGCATC 59.936 43.478 9.53 0.00 31.39 3.91
908 929 3.011818 TCATTGCAATCGACAAGAGCAT 58.988 40.909 9.53 0.00 31.39 3.79
909 930 2.425539 TCATTGCAATCGACAAGAGCA 58.574 42.857 9.53 0.00 0.00 4.26
910 931 3.687572 ATCATTGCAATCGACAAGAGC 57.312 42.857 9.53 0.00 0.00 4.09
911 932 5.752472 AGTCTATCATTGCAATCGACAAGAG 59.248 40.000 9.53 7.11 0.00 2.85
912 933 5.664457 AGTCTATCATTGCAATCGACAAGA 58.336 37.500 9.53 13.14 0.00 3.02
913 934 5.050499 GGAGTCTATCATTGCAATCGACAAG 60.050 44.000 9.53 11.36 0.00 3.16
914 935 4.811024 GGAGTCTATCATTGCAATCGACAA 59.189 41.667 9.53 2.99 0.00 3.18
915 936 4.371786 GGAGTCTATCATTGCAATCGACA 58.628 43.478 9.53 0.00 0.00 4.35
916 937 3.743396 GGGAGTCTATCATTGCAATCGAC 59.257 47.826 9.53 13.06 0.00 4.20
917 938 3.643320 AGGGAGTCTATCATTGCAATCGA 59.357 43.478 9.53 11.12 0.00 3.59
918 939 3.993081 GAGGGAGTCTATCATTGCAATCG 59.007 47.826 9.53 5.77 0.00 3.34
919 940 5.226194 AGAGGGAGTCTATCATTGCAATC 57.774 43.478 9.53 0.00 31.71 2.67
920 941 5.131642 TGAAGAGGGAGTCTATCATTGCAAT 59.868 40.000 5.99 5.99 32.65 3.56
921 942 4.471025 TGAAGAGGGAGTCTATCATTGCAA 59.529 41.667 0.00 0.00 32.65 4.08
922 943 4.033009 TGAAGAGGGAGTCTATCATTGCA 58.967 43.478 0.00 0.00 32.65 4.08
923 944 4.100808 AGTGAAGAGGGAGTCTATCATTGC 59.899 45.833 0.00 0.00 32.65 3.56
924 945 5.867903 AGTGAAGAGGGAGTCTATCATTG 57.132 43.478 0.00 0.00 32.65 2.82
925 946 6.201591 AGAAGTGAAGAGGGAGTCTATCATT 58.798 40.000 0.00 0.00 32.65 2.57
926 947 5.776358 AGAAGTGAAGAGGGAGTCTATCAT 58.224 41.667 0.00 0.00 32.65 2.45
927 948 5.044476 AGAGAAGTGAAGAGGGAGTCTATCA 60.044 44.000 0.00 0.00 32.65 2.15
928 949 5.445964 AGAGAAGTGAAGAGGGAGTCTATC 58.554 45.833 0.00 0.00 32.65 2.08
929 950 5.466127 AGAGAAGTGAAGAGGGAGTCTAT 57.534 43.478 0.00 0.00 32.65 1.98
930 951 4.938575 AGAGAAGTGAAGAGGGAGTCTA 57.061 45.455 0.00 0.00 32.65 2.59
931 952 3.825908 AGAGAAGTGAAGAGGGAGTCT 57.174 47.619 0.00 0.00 36.94 3.24
932 953 3.829601 TGAAGAGAAGTGAAGAGGGAGTC 59.170 47.826 0.00 0.00 0.00 3.36
933 954 3.831911 CTGAAGAGAAGTGAAGAGGGAGT 59.168 47.826 0.00 0.00 0.00 3.85
934 955 3.831911 ACTGAAGAGAAGTGAAGAGGGAG 59.168 47.826 0.00 0.00 0.00 4.30
935 956 3.829601 GACTGAAGAGAAGTGAAGAGGGA 59.170 47.826 0.00 0.00 0.00 4.20
936 957 3.576118 TGACTGAAGAGAAGTGAAGAGGG 59.424 47.826 0.00 0.00 0.00 4.30
937 958 4.862902 TGACTGAAGAGAAGTGAAGAGG 57.137 45.455 0.00 0.00 0.00 3.69
938 959 5.691305 CAGTTGACTGAAGAGAAGTGAAGAG 59.309 44.000 5.19 0.00 46.59 2.85
939 960 5.127845 ACAGTTGACTGAAGAGAAGTGAAGA 59.872 40.000 17.42 0.00 46.59 2.87
940 961 5.233902 CACAGTTGACTGAAGAGAAGTGAAG 59.766 44.000 17.42 0.00 46.59 3.02
941 962 5.111989 CACAGTTGACTGAAGAGAAGTGAA 58.888 41.667 17.42 0.00 46.59 3.18
942 963 4.160439 ACACAGTTGACTGAAGAGAAGTGA 59.840 41.667 17.42 0.00 46.59 3.41
943 964 4.269603 CACACAGTTGACTGAAGAGAAGTG 59.730 45.833 17.42 5.54 46.59 3.16
944 965 4.437239 CACACAGTTGACTGAAGAGAAGT 58.563 43.478 17.42 2.47 46.59 3.01
945 966 3.806521 CCACACAGTTGACTGAAGAGAAG 59.193 47.826 17.42 1.95 46.59 2.85
946 967 3.197766 ACCACACAGTTGACTGAAGAGAA 59.802 43.478 17.42 0.00 46.59 2.87
947 968 2.766263 ACCACACAGTTGACTGAAGAGA 59.234 45.455 17.42 0.00 46.59 3.10
948 969 2.868583 CACCACACAGTTGACTGAAGAG 59.131 50.000 17.42 8.06 46.59 2.85
949 970 2.236146 ACACCACACAGTTGACTGAAGA 59.764 45.455 17.42 0.00 46.59 2.87
950 971 2.632377 ACACCACACAGTTGACTGAAG 58.368 47.619 17.42 11.33 46.59 3.02
951 972 2.779755 ACACCACACAGTTGACTGAA 57.220 45.000 17.42 0.00 46.59 3.02
952 973 3.028130 TCTACACCACACAGTTGACTGA 58.972 45.455 17.42 0.00 46.59 3.41
954 975 2.224066 GCTCTACACCACACAGTTGACT 60.224 50.000 0.00 0.00 0.00 3.41
955 976 2.135933 GCTCTACACCACACAGTTGAC 58.864 52.381 0.00 0.00 0.00 3.18
956 977 1.070134 GGCTCTACACCACACAGTTGA 59.930 52.381 0.00 0.00 0.00 3.18
957 978 1.512926 GGCTCTACACCACACAGTTG 58.487 55.000 0.00 0.00 0.00 3.16
958 979 0.033504 CGGCTCTACACCACACAGTT 59.966 55.000 0.00 0.00 0.00 3.16
959 980 0.826256 TCGGCTCTACACCACACAGT 60.826 55.000 0.00 0.00 0.00 3.55
960 981 0.532573 ATCGGCTCTACACCACACAG 59.467 55.000 0.00 0.00 0.00 3.66
961 982 0.530744 GATCGGCTCTACACCACACA 59.469 55.000 0.00 0.00 0.00 3.72
962 983 0.525668 CGATCGGCTCTACACCACAC 60.526 60.000 7.38 0.00 0.00 3.82
963 984 0.678684 TCGATCGGCTCTACACCACA 60.679 55.000 16.41 0.00 0.00 4.17
976 997 3.698382 GCTTCCACAGCTCGATCG 58.302 61.111 9.36 9.36 46.27 3.69
1188 1216 1.395045 CCTCGCTGTAGATCCTGGCA 61.395 60.000 0.00 0.00 0.00 4.92
1195 1223 1.993956 AGCATCTCCTCGCTGTAGAT 58.006 50.000 0.00 0.00 37.02 1.98
1432 1460 3.958860 GGGGATGGGGATGCCGAG 61.959 72.222 0.00 0.00 32.23 4.63
1545 1579 0.749049 CATCCAGCATCGACAGGAGA 59.251 55.000 0.00 0.00 32.91 3.71
1563 1597 1.984570 CTTCTCGCCCTCCACCTCA 60.985 63.158 0.00 0.00 0.00 3.86
1579 1613 0.913451 ATCACCCTCAGCTGCTCCTT 60.913 55.000 9.47 0.00 0.00 3.36
1580 1614 1.306825 ATCACCCTCAGCTGCTCCT 60.307 57.895 9.47 0.00 0.00 3.69
1647 1681 1.239296 CGTGAGGGTCCTCGTACACA 61.239 60.000 11.89 0.00 45.48 3.72
1732 1766 2.494918 GATCTCACCGACCCCGTG 59.505 66.667 0.00 0.00 0.00 4.94
1741 1775 0.669077 ACATCGCGTAGGATCTCACC 59.331 55.000 5.77 0.00 0.00 4.02
1752 1786 0.458543 CTTGCTGGAGTACATCGCGT 60.459 55.000 5.77 0.00 0.00 6.01
1794 1828 1.472082 TGGCCATTATCAGCAACAACG 59.528 47.619 0.00 0.00 0.00 4.10
1807 1844 1.476488 GGCTTCAATACGTTGGCCATT 59.524 47.619 6.09 0.00 40.39 3.16
2135 2186 1.530183 GCTCCATTGCTCCATCCCC 60.530 63.158 0.00 0.00 0.00 4.81
2439 2490 1.137086 CAGGTTACGGCATAGCTCTGT 59.863 52.381 0.00 0.00 0.00 3.41
2501 2552 4.006319 GCATCAGCACCTTTCTTAGTTCT 58.994 43.478 0.00 0.00 41.58 3.01
2543 2594 3.801698 CAAGCAGGTCATAGCATACACT 58.198 45.455 0.00 0.00 0.00 3.55
2633 2684 1.412710 TCACTCCGTGCATATCCTTCC 59.587 52.381 0.00 0.00 32.98 3.46
2731 2782 2.187707 CTTGCGCATTATTCCTTGTGC 58.812 47.619 12.75 1.74 46.76 4.57
2732 2783 3.119884 TCACTTGCGCATTATTCCTTGTG 60.120 43.478 12.75 9.39 0.00 3.33
2885 2936 1.135527 GTCACATTGCCACCATGGATG 59.864 52.381 21.47 13.73 40.96 3.51
2951 3002 3.131046 CACCTGCTTTTCCAAAGACTGTT 59.869 43.478 0.25 0.00 0.00 3.16
3143 3194 3.922171 AAATCCAGGGTCTCTAAGCAG 57.078 47.619 0.00 0.00 0.00 4.24
3289 3340 2.206750 TGTTTCCGGACAAGAACTTCG 58.793 47.619 15.79 0.00 0.00 3.79
3350 3401 3.032265 AGTTGAAGAAACCCTTGCCTT 57.968 42.857 0.00 0.00 39.85 4.35
3573 3624 5.567037 ACATCATATTTGGAATCCTCCGA 57.433 39.130 0.00 0.00 45.85 4.55
3575 3626 7.234355 ACCTTACATCATATTTGGAATCCTCC 58.766 38.462 0.00 0.00 42.81 4.30
3578 3629 7.721399 AGTGACCTTACATCATATTTGGAATCC 59.279 37.037 0.00 0.00 0.00 3.01
3638 3689 1.338020 CCTGACAGCAAGGGAACAAAC 59.662 52.381 0.00 0.00 0.00 2.93
3769 3820 5.088680 TGCCCCTGATTTCATTTCAAATC 57.911 39.130 0.00 0.00 41.41 2.17
3806 3857 1.202475 TGCACTACAAAGCACAGACGA 60.202 47.619 0.00 0.00 35.51 4.20
3881 3932 1.004080 GCAGAGCAGCTGGAGTGAA 60.004 57.895 17.12 0.00 45.03 3.18
3903 3954 1.275573 GCCGGAAAGACCAACTAGACT 59.724 52.381 5.05 0.00 38.90 3.24
4022 4073 0.106868 TGAGTCTCGGCCTATTCGGA 60.107 55.000 0.00 0.00 33.16 4.55
4079 4130 2.373836 TGAAACTTCTTCATTCCCCGGA 59.626 45.455 0.73 0.00 0.00 5.14
4096 4147 1.815408 GCTTGTCCCTCACAGCTGAAA 60.815 52.381 23.35 6.67 35.97 2.69
4112 4163 4.634004 TGGACTACACATATTTTCCGCTTG 59.366 41.667 0.00 0.00 0.00 4.01
4151 4202 4.935578 TCTTGAGACTAGAATCCAGTCCA 58.064 43.478 5.24 1.40 42.85 4.02
4223 4274 3.843027 AGTGACCAGATGAGGAAGTTGAT 59.157 43.478 0.00 0.00 0.00 2.57
4226 4277 3.242867 TCAGTGACCAGATGAGGAAGTT 58.757 45.455 0.00 0.00 0.00 2.66
4259 4464 2.033049 GCTTGCTTCGCTGAATCATCAT 59.967 45.455 0.00 0.00 34.37 2.45
4262 4467 1.747709 AGCTTGCTTCGCTGAATCAT 58.252 45.000 0.00 0.00 36.15 2.45
4279 4484 1.354506 GAATCATCACCGCAGCAGC 59.645 57.895 0.00 0.00 37.42 5.25
4285 4490 0.379669 CCAAGCTGAATCATCACCGC 59.620 55.000 0.00 0.00 0.00 5.68
4314 4525 4.447054 GCTCGTCATTTATCATGTCTCTGG 59.553 45.833 0.00 0.00 0.00 3.86
4323 4534 3.251479 ACAGCAGCTCGTCATTTATCA 57.749 42.857 0.00 0.00 0.00 2.15
4324 4535 3.372206 ACAACAGCAGCTCGTCATTTATC 59.628 43.478 0.00 0.00 0.00 1.75
4333 4544 2.028045 CGTACAATACAACAGCAGCTCG 59.972 50.000 0.00 0.00 0.00 5.03
4352 4563 4.374399 CCAGAAGTAAAACTACACACCGT 58.626 43.478 0.00 0.00 0.00 4.83
4353 4564 3.185797 GCCAGAAGTAAAACTACACACCG 59.814 47.826 0.00 0.00 0.00 4.94
4354 4565 3.185797 CGCCAGAAGTAAAACTACACACC 59.814 47.826 0.00 0.00 0.00 4.16
4355 4566 4.053295 TCGCCAGAAGTAAAACTACACAC 58.947 43.478 0.00 0.00 0.00 3.82
4356 4567 4.053295 GTCGCCAGAAGTAAAACTACACA 58.947 43.478 0.00 0.00 0.00 3.72
4357 4568 4.053295 TGTCGCCAGAAGTAAAACTACAC 58.947 43.478 0.00 0.00 0.00 2.90
4358 4569 4.325028 TGTCGCCAGAAGTAAAACTACA 57.675 40.909 0.00 0.00 0.00 2.74
4359 4570 4.748600 ACTTGTCGCCAGAAGTAAAACTAC 59.251 41.667 0.00 0.00 30.47 2.73
4360 4571 4.952460 ACTTGTCGCCAGAAGTAAAACTA 58.048 39.130 0.00 0.00 30.47 2.24
4361 4572 3.805207 ACTTGTCGCCAGAAGTAAAACT 58.195 40.909 0.00 0.00 30.47 2.66
4362 4573 4.547406 AACTTGTCGCCAGAAGTAAAAC 57.453 40.909 0.00 0.00 32.03 2.43
4363 4574 5.106078 ACAAAACTTGTCGCCAGAAGTAAAA 60.106 36.000 0.00 0.00 40.56 1.52
4364 4575 4.396790 ACAAAACTTGTCGCCAGAAGTAAA 59.603 37.500 0.00 0.00 40.56 2.01
4365 4576 3.942748 ACAAAACTTGTCGCCAGAAGTAA 59.057 39.130 0.00 0.00 40.56 2.24
4366 4577 3.537580 ACAAAACTTGTCGCCAGAAGTA 58.462 40.909 0.00 0.00 40.56 2.24
4367 4578 2.365582 ACAAAACTTGTCGCCAGAAGT 58.634 42.857 0.00 0.00 40.56 3.01
4410 4621 8.082242 ACTTTGTAACAATAGAAAACCATGAGC 58.918 33.333 0.00 0.00 0.00 4.26
4488 4710 7.467675 GCATGATGTGAATATACAGTTGCAAGA 60.468 37.037 0.00 0.00 35.49 3.02
4549 4784 3.181455 TGTTAGCTTCTGAAGAACAGCCA 60.181 43.478 21.06 6.27 45.38 4.75
4551 4786 5.208503 GTTTGTTAGCTTCTGAAGAACAGC 58.791 41.667 21.06 14.07 45.38 4.40
4598 4840 1.057275 TGAAGGTAGTGTGGTGGGCA 61.057 55.000 0.00 0.00 0.00 5.36
4772 5069 2.462889 GATCTTCAGCGAGCTTCTGAG 58.537 52.381 15.99 11.91 41.10 3.35
4904 5204 4.767255 AGCGGCGAAAGGAGCAGG 62.767 66.667 12.98 0.00 36.08 4.85
5033 5356 0.608130 CAGCACCACTACACCTAGCA 59.392 55.000 0.00 0.00 0.00 3.49
5059 5383 3.817084 TCAGTTCATCCAGAAAGCACAAG 59.183 43.478 0.00 0.00 38.13 3.16
5060 5384 3.819368 TCAGTTCATCCAGAAAGCACAA 58.181 40.909 0.00 0.00 38.13 3.33
5061 5385 3.490439 TCAGTTCATCCAGAAAGCACA 57.510 42.857 0.00 0.00 38.13 4.57
5062 5386 4.005650 TCATCAGTTCATCCAGAAAGCAC 58.994 43.478 0.00 0.00 38.13 4.40
5063 5387 4.259356 CTCATCAGTTCATCCAGAAAGCA 58.741 43.478 0.00 0.00 38.13 3.91
5064 5388 3.626670 CCTCATCAGTTCATCCAGAAAGC 59.373 47.826 0.00 0.00 38.13 3.51
5065 5389 4.634883 CACCTCATCAGTTCATCCAGAAAG 59.365 45.833 0.00 0.00 38.13 2.62
5084 5418 0.035056 GCTTAGCACCACCATCACCT 60.035 55.000 0.00 0.00 0.00 4.00
5125 5484 0.253207 TTCCCTTCTCTTCCTCCCCC 60.253 60.000 0.00 0.00 0.00 5.40
5127 5486 0.537653 CGTTCCCTTCTCTTCCTCCC 59.462 60.000 0.00 0.00 0.00 4.30
5130 5489 0.610687 CAGCGTTCCCTTCTCTTCCT 59.389 55.000 0.00 0.00 0.00 3.36
5131 5490 1.021920 GCAGCGTTCCCTTCTCTTCC 61.022 60.000 0.00 0.00 0.00 3.46
5141 5501 0.517316 CACCTAAACTGCAGCGTTCC 59.483 55.000 15.27 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.