Multiple sequence alignment - TraesCS5A01G343000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G343000 chr5A 100.000 3197 0 0 1 3197 548222576 548219380 0.000000e+00 5904.0
1 TraesCS5A01G343000 chr5B 87.863 1549 95 31 502 2005 527035532 527034032 0.000000e+00 1733.0
2 TraesCS5A01G343000 chr5B 87.674 503 40 6 1 490 527036085 527035592 1.660000e-157 566.0
3 TraesCS5A01G343000 chr5B 91.304 46 2 1 3084 3127 535362698 535362653 9.580000e-06 62.1
4 TraesCS5A01G343000 chr5D 89.895 1336 73 22 723 2017 434364861 434363547 0.000000e+00 1663.0
5 TraesCS5A01G343000 chr5D 90.119 587 34 8 1444 2027 434347709 434348274 0.000000e+00 741.0
6 TraesCS5A01G343000 chr5D 91.650 503 27 5 1 490 434367020 434366520 0.000000e+00 682.0
7 TraesCS5A01G343000 chr5D 94.851 369 18 1 1 368 434376387 434376019 2.770000e-160 575.0
8 TraesCS5A01G343000 chr5D 94.619 223 9 2 2090 2309 434348372 434348594 3.050000e-90 342.0
9 TraesCS5A01G343000 chr5D 92.558 215 10 4 2099 2309 434363546 434363334 1.440000e-78 303.0
10 TraesCS5A01G343000 chr5D 88.106 227 13 6 502 728 434366460 434366248 1.140000e-64 257.0
11 TraesCS5A01G343000 chr5D 92.373 118 9 0 502 619 342600379 342600262 5.480000e-38 169.0
12 TraesCS5A01G343000 chr5D 96.491 57 2 0 1358 1414 434347490 434347546 9.440000e-16 95.3
13 TraesCS5A01G343000 chr2D 79.627 643 112 15 2313 2945 321034583 321035216 8.140000e-121 444.0
14 TraesCS5A01G343000 chr2D 91.525 118 10 0 502 619 106145663 106145546 2.550000e-36 163.0
15 TraesCS5A01G343000 chr2D 89.011 91 10 0 2991 3081 549618787 549618697 2.610000e-21 113.0
16 TraesCS5A01G343000 chr2D 89.655 58 4 2 428 485 101307305 101307360 4.420000e-09 73.1
17 TraesCS5A01G343000 chr6A 83.085 201 26 7 423 619 602168212 602168408 3.280000e-40 176.0
18 TraesCS5A01G343000 chr6A 97.468 79 2 0 3119 3197 480164687 480164765 5.560000e-28 135.0
19 TraesCS5A01G343000 chr6A 97.468 79 2 0 3119 3197 557664861 557664783 5.560000e-28 135.0
20 TraesCS5A01G343000 chr6A 90.426 94 5 2 2007 2097 354019327 354019419 1.560000e-23 121.0
21 TraesCS5A01G343000 chr6A 81.250 80 7 6 460 534 23604179 23604255 1.240000e-04 58.4
22 TraesCS5A01G343000 chr3A 83.251 203 23 9 423 619 743855412 743855215 3.280000e-40 176.0
23 TraesCS5A01G343000 chr3A 97.468 79 2 0 3119 3197 122550375 122550453 5.560000e-28 135.0
24 TraesCS5A01G343000 chr3A 92.222 90 4 1 2011 2097 60843326 60843415 1.200000e-24 124.0
25 TraesCS5A01G343000 chr7A 92.373 118 9 0 502 619 701053004 701053121 5.480000e-38 169.0
26 TraesCS5A01G343000 chr7A 97.468 79 2 0 3119 3197 295166802 295166880 5.560000e-28 135.0
27 TraesCS5A01G343000 chr7A 98.667 75 1 0 3123 3197 136238176 136238102 2.000000e-27 134.0
28 TraesCS5A01G343000 chr7A 93.258 89 5 1 3110 3197 582858848 582858760 2.590000e-26 130.0
29 TraesCS5A01G343000 chr7A 90.426 94 5 2 2008 2097 514179118 514179211 1.560000e-23 121.0
30 TraesCS5A01G343000 chr4B 91.525 118 10 0 502 619 561588474 561588357 2.550000e-36 163.0
31 TraesCS5A01G343000 chr4B 92.308 91 7 0 2991 3081 651630355 651630445 2.590000e-26 130.0
32 TraesCS5A01G343000 chr1A 91.525 118 10 0 502 619 104827416 104827299 2.550000e-36 163.0
33 TraesCS5A01G343000 chr1A 100.000 75 0 0 3123 3197 66907447 66907521 4.300000e-29 139.0
34 TraesCS5A01G343000 chr4A 89.062 128 14 0 492 619 544049151 544049278 3.300000e-35 159.0
35 TraesCS5A01G343000 chr4A 98.718 78 1 0 3120 3197 103279999 103280076 4.300000e-29 139.0
36 TraesCS5A01G343000 chr4A 97.500 80 1 1 3118 3197 520609405 520609327 5.560000e-28 135.0
37 TraesCS5A01G343000 chr4A 88.889 99 8 1 2014 2109 48517215 48517313 5.600000e-23 119.0
38 TraesCS5A01G343000 chr4A 90.244 82 7 1 2991 3072 615044276 615044356 4.360000e-19 106.0
39 TraesCS5A01G343000 chr6D 90.426 94 5 2 2008 2097 307732343 307732436 1.560000e-23 121.0
40 TraesCS5A01G343000 chr6D 85.981 107 9 4 1998 2101 1548854 1548751 3.370000e-20 110.0
41 TraesCS5A01G343000 chr6D 88.043 92 9 2 2991 3081 468132824 468132734 1.210000e-19 108.0
42 TraesCS5A01G343000 chr6D 86.957 92 10 2 2991 3081 22078554 22078464 5.640000e-18 102.0
43 TraesCS5A01G343000 chr6D 100.000 28 0 0 1645 1672 251651184 251651211 6.000000e-03 52.8
44 TraesCS5A01G343000 chr7B 90.217 92 8 1 2991 3081 1742969 1743060 5.600000e-23 119.0
45 TraesCS5A01G343000 chr7B 89.474 95 6 2 2007 2097 510387536 510387630 2.010000e-22 117.0
46 TraesCS5A01G343000 chr7B 89.474 95 6 2 2007 2097 510433672 510433766 2.010000e-22 117.0
47 TraesCS5A01G343000 chr7B 88.043 92 8 3 2991 3081 583500307 583500218 4.360000e-19 106.0
48 TraesCS5A01G343000 chr2A 89.583 96 6 2 2006 2097 661154288 661154383 5.600000e-23 119.0
49 TraesCS5A01G343000 chr2A 90.909 44 4 0 3084 3127 298236441 298236398 3.440000e-05 60.2
50 TraesCS5A01G343000 chr1B 87.912 91 9 2 2991 3081 643935079 643935167 4.360000e-19 106.0
51 TraesCS5A01G343000 chr3D 86.813 91 11 1 2991 3081 214970484 214970395 2.030000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G343000 chr5A 548219380 548222576 3196 True 5904.000000 5904 100.00000 1 3197 1 chr5A.!!$R1 3196
1 TraesCS5A01G343000 chr5B 527034032 527036085 2053 True 1149.500000 1733 87.76850 1 2005 2 chr5B.!!$R2 2004
2 TraesCS5A01G343000 chr5D 434363334 434367020 3686 True 726.250000 1663 90.55225 1 2309 4 chr5D.!!$R3 2308
3 TraesCS5A01G343000 chr5D 434347490 434348594 1104 False 392.766667 741 93.74300 1358 2309 3 chr5D.!!$F1 951
4 TraesCS5A01G343000 chr2D 321034583 321035216 633 False 444.000000 444 79.62700 2313 2945 1 chr2D.!!$F2 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 697 0.035056 CATCAGGACTTGGGGTGGAC 60.035 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2605 4328 0.108992 TAGTGTCATGTCGGCCGTTC 60.109 55.0 27.15 19.5 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.857157 TCCCTAACCACATGATTAGGC 57.143 47.619 20.56 0.00 44.22 3.93
50 52 7.604545 GGCATAACCATTTTTACTTTTTGGCTA 59.395 33.333 0.00 0.00 38.86 3.93
86 88 9.547279 TCAAATGGTTAGAGATAGCCATCTATA 57.453 33.333 0.00 0.00 41.78 1.31
96 98 8.664079 AGAGATAGCCATCTATATGTTTGGTTT 58.336 33.333 0.00 0.00 41.78 3.27
138 140 5.755849 AGGTTGTTATGATAACCCCTTCAG 58.244 41.667 12.39 0.00 45.34 3.02
155 157 4.500205 CCTTCAGACAAGCAATTTGAGCAA 60.500 41.667 0.00 0.00 39.21 3.91
234 239 2.292292 GTGGGCTTCGTTTAGCTTTTCA 59.708 45.455 0.00 0.00 40.99 2.69
332 349 7.114388 CGCCCAAAGTTTGAGTTAAAATTCTAC 59.886 37.037 17.33 0.00 35.70 2.59
421 444 4.726583 AGGTACTTTTGGAGAGGGTTTTC 58.273 43.478 0.00 0.00 27.25 2.29
422 445 4.415846 AGGTACTTTTGGAGAGGGTTTTCT 59.584 41.667 0.00 0.00 27.25 2.52
423 446 5.103643 AGGTACTTTTGGAGAGGGTTTTCTT 60.104 40.000 0.00 0.00 27.25 2.52
424 447 5.597182 GGTACTTTTGGAGAGGGTTTTCTTT 59.403 40.000 0.00 0.00 0.00 2.52
425 448 6.097839 GGTACTTTTGGAGAGGGTTTTCTTTT 59.902 38.462 0.00 0.00 0.00 2.27
426 449 5.977635 ACTTTTGGAGAGGGTTTTCTTTTG 58.022 37.500 0.00 0.00 0.00 2.44
427 450 5.483937 ACTTTTGGAGAGGGTTTTCTTTTGT 59.516 36.000 0.00 0.00 0.00 2.83
438 461 6.768381 AGGGTTTTCTTTTGTTTTGAACACAA 59.232 30.769 0.00 0.00 41.97 3.33
449 472 4.884458 TTTGAACACAATACAGACGCAA 57.116 36.364 0.00 0.00 0.00 4.85
469 492 1.482955 GCGCTCATACATACACGCG 59.517 57.895 3.53 3.53 43.03 6.01
476 499 4.348656 CTCATACATACACGCGTACACTT 58.651 43.478 13.44 0.00 0.00 3.16
480 503 1.841944 CATACACGCGTACACTTACCG 59.158 52.381 13.44 0.00 0.00 4.02
564 635 0.257039 CATCCCCTCCCACTGAAAGG 59.743 60.000 0.00 0.00 39.30 3.11
594 665 7.341769 TCACCGGAAATCTTGAAATAAATCCAT 59.658 33.333 9.46 0.00 0.00 3.41
619 690 0.463295 ATGCGAGCATCAGGACTTGG 60.463 55.000 4.52 0.00 33.17 3.61
620 691 1.817099 GCGAGCATCAGGACTTGGG 60.817 63.158 0.00 0.00 33.17 4.12
621 692 1.153289 CGAGCATCAGGACTTGGGG 60.153 63.158 0.00 0.00 33.17 4.96
622 693 1.903877 CGAGCATCAGGACTTGGGGT 61.904 60.000 0.00 0.00 33.17 4.95
623 694 0.393537 GAGCATCAGGACTTGGGGTG 60.394 60.000 0.00 0.00 33.17 4.61
624 695 1.379044 GCATCAGGACTTGGGGTGG 60.379 63.158 0.00 0.00 0.00 4.61
625 696 1.852157 GCATCAGGACTTGGGGTGGA 61.852 60.000 0.00 0.00 0.00 4.02
626 697 0.035056 CATCAGGACTTGGGGTGGAC 60.035 60.000 0.00 0.00 0.00 4.02
627 698 0.475632 ATCAGGACTTGGGGTGGACA 60.476 55.000 0.00 0.00 0.00 4.02
628 699 1.127567 TCAGGACTTGGGGTGGACAG 61.128 60.000 0.00 0.00 0.00 3.51
629 700 1.847968 AGGACTTGGGGTGGACAGG 60.848 63.158 0.00 0.00 0.00 4.00
630 701 2.154074 GGACTTGGGGTGGACAGGT 61.154 63.158 0.00 0.00 0.00 4.00
631 702 1.716028 GGACTTGGGGTGGACAGGTT 61.716 60.000 0.00 0.00 0.00 3.50
632 703 0.185175 GACTTGGGGTGGACAGGTTT 59.815 55.000 0.00 0.00 0.00 3.27
633 704 0.634465 ACTTGGGGTGGACAGGTTTT 59.366 50.000 0.00 0.00 0.00 2.43
634 705 1.039856 CTTGGGGTGGACAGGTTTTG 58.960 55.000 0.00 0.00 0.00 2.44
635 706 0.397816 TTGGGGTGGACAGGTTTTGG 60.398 55.000 0.00 0.00 0.00 3.28
636 707 1.533033 GGGGTGGACAGGTTTTGGG 60.533 63.158 0.00 0.00 0.00 4.12
637 708 1.533033 GGGTGGACAGGTTTTGGGG 60.533 63.158 0.00 0.00 0.00 4.96
638 709 1.231928 GGTGGACAGGTTTTGGGGT 59.768 57.895 0.00 0.00 0.00 4.95
642 713 1.539665 GACAGGTTTTGGGGTGGGA 59.460 57.895 0.00 0.00 0.00 4.37
652 744 2.689175 GGGTGGGATGGAATGGCA 59.311 61.111 0.00 0.00 0.00 4.92
679 771 3.376078 GTGGCTACGGTCCGGACA 61.376 66.667 34.40 14.79 0.00 4.02
714 806 1.795962 GATTTGCGTCCGGTTTGCG 60.796 57.895 0.00 3.66 0.00 4.85
722 814 1.166989 GTCCGGTTTGCGGGAAAATA 58.833 50.000 0.00 0.00 44.19 1.40
744 2228 2.116383 GTCTGGACGATCCACGGAT 58.884 57.895 0.00 0.00 42.67 4.18
753 2237 1.066858 CGATCCACGGATTGATAGGGG 60.067 57.143 7.46 0.00 38.06 4.79
781 2265 1.662438 GGATTGCAAAATCCGCCCGA 61.662 55.000 1.71 0.00 39.33 5.14
795 2279 1.219664 CCCGAACCGCTATGTCCAA 59.780 57.895 0.00 0.00 0.00 3.53
798 2282 2.014128 CCGAACCGCTATGTCCAAATT 58.986 47.619 0.00 0.00 0.00 1.82
819 2303 1.067974 GTTGCAGGCGGTTTAAAGGTT 59.932 47.619 0.00 0.00 0.00 3.50
824 2308 1.202675 AGGCGGTTTAAAGGTTCGTGA 60.203 47.619 0.00 0.00 0.00 4.35
866 2350 1.791103 TTTGCAGGAAAAGGACGGCG 61.791 55.000 4.80 4.80 0.00 6.46
911 2403 8.653191 TGGTAGGAGAAACTAACTATTGTTGAA 58.347 33.333 2.59 0.00 37.59 2.69
945 2437 7.923344 ACAGTCATTTCCTAAATAGACAGATCG 59.077 37.037 12.85 0.00 34.38 3.69
950 2442 9.081997 CATTTCCTAAATAGACAGATCGCTATC 57.918 37.037 6.35 0.00 0.00 2.08
952 2444 6.486056 TCCTAAATAGACAGATCGCTATCCT 58.514 40.000 0.00 0.00 31.98 3.24
967 2459 4.318831 CGCTATCCTTCATCTTTTAACGGC 60.319 45.833 0.00 0.00 0.00 5.68
981 2477 1.029947 AACGGCATAAAAGGAGCCCG 61.030 55.000 0.00 0.00 45.56 6.13
982 2478 2.834618 CGGCATAAAAGGAGCCCGC 61.835 63.158 0.00 0.00 45.56 6.13
983 2479 1.752694 GGCATAAAAGGAGCCCGCA 60.753 57.895 0.00 0.00 42.58 5.69
984 2480 1.319614 GGCATAAAAGGAGCCCGCAA 61.320 55.000 0.00 0.00 42.58 4.85
985 2481 0.530288 GCATAAAAGGAGCCCGCAAA 59.470 50.000 0.00 0.00 0.00 3.68
986 2482 1.067213 GCATAAAAGGAGCCCGCAAAA 60.067 47.619 0.00 0.00 0.00 2.44
1009 2505 2.702270 AAAGGAGCCCATTTCCAAGT 57.298 45.000 0.00 0.00 37.18 3.16
1010 2506 2.702270 AAGGAGCCCATTTCCAAGTT 57.298 45.000 0.00 0.00 37.18 2.66
1039 2544 7.557724 AGTCCCGTTTTATTTTTCCTTTTTCA 58.442 30.769 0.00 0.00 0.00 2.69
1147 2652 2.813908 CGGTTGGAGCTGGCGTAC 60.814 66.667 0.00 0.00 0.00 3.67
1239 2745 4.630069 CGTACTCCTACTTTTGATTGTGGG 59.370 45.833 0.00 0.00 36.35 4.61
1261 2767 2.717639 AGGAAATGATGACCTTCCCG 57.282 50.000 0.00 0.00 39.64 5.14
1262 2768 2.196595 AGGAAATGATGACCTTCCCGA 58.803 47.619 0.00 0.00 39.64 5.14
1279 2785 3.071892 TCCCGAACTACAAGGTTGACATT 59.928 43.478 0.00 0.00 0.00 2.71
1280 2786 3.435671 CCCGAACTACAAGGTTGACATTC 59.564 47.826 0.00 0.00 0.00 2.67
1325 2835 2.259818 CGTTCTCTGTGGAGCGCT 59.740 61.111 11.27 11.27 39.31 5.92
1349 2859 7.060383 TGTCTATCCTTTTCATTTGGCAAAA 57.940 32.000 17.70 0.00 0.00 2.44
1350 2860 6.928492 TGTCTATCCTTTTCATTTGGCAAAAC 59.072 34.615 17.70 6.22 0.00 2.43
1352 2862 7.440856 GTCTATCCTTTTCATTTGGCAAAACAA 59.559 33.333 17.70 9.61 0.00 2.83
1414 2927 4.737054 CTCTCACAAGCAAACAAACACTT 58.263 39.130 0.00 0.00 0.00 3.16
1429 2958 1.905894 ACACTTGCAACCCCAAACTTT 59.094 42.857 0.00 0.00 0.00 2.66
1430 2959 3.100671 ACACTTGCAACCCCAAACTTTA 58.899 40.909 0.00 0.00 0.00 1.85
1431 2960 3.515901 ACACTTGCAACCCCAAACTTTAA 59.484 39.130 0.00 0.00 0.00 1.52
1754 3429 2.841988 GCGGAGATGAGGGAGGCT 60.842 66.667 0.00 0.00 0.00 4.58
2001 3676 4.174411 TCTCGTTCCAAGTGATGTACTG 57.826 45.455 0.00 0.00 40.26 2.74
2016 3694 8.891720 AGTGATGTACTGCTAGTTTACTACTAC 58.108 37.037 0.00 0.00 38.49 2.73
2019 3697 7.856145 TGTACTGCTAGTTTACTACTACTCC 57.144 40.000 0.00 0.00 38.33 3.85
2027 3705 6.067217 AGTTTACTACTACTCCCTCCGTTA 57.933 41.667 0.00 0.00 34.56 3.18
2028 3706 5.883115 AGTTTACTACTACTCCCTCCGTTAC 59.117 44.000 0.00 0.00 34.56 2.50
2032 3710 5.267587 ACTACTACTCCCTCCGTTACAAAT 58.732 41.667 0.00 0.00 0.00 2.32
2033 3711 5.718607 ACTACTACTCCCTCCGTTACAAATT 59.281 40.000 0.00 0.00 0.00 1.82
2035 3713 6.803366 ACTACTCCCTCCGTTACAAATTAT 57.197 37.500 0.00 0.00 0.00 1.28
2058 3771 9.582431 TTATTTGTCGTGGTTTTACAAATTTGA 57.418 25.926 24.64 5.76 46.40 2.69
2060 3773 6.872670 TGTCGTGGTTTTACAAATTTGAAC 57.127 33.333 24.64 16.90 0.00 3.18
2064 3777 9.074443 GTCGTGGTTTTACAAATTTGAACTAAA 57.926 29.630 24.64 14.98 0.00 1.85
2065 3778 9.635520 TCGTGGTTTTACAAATTTGAACTAAAA 57.364 25.926 24.64 19.22 0.00 1.52
2066 3779 9.678247 CGTGGTTTTACAAATTTGAACTAAAAC 57.322 29.630 27.49 27.49 36.92 2.43
2067 3780 9.976255 GTGGTTTTACAAATTTGAACTAAAACC 57.024 29.630 35.20 35.20 45.58 3.27
2069 3782 9.976255 GGTTTTACAAATTTGAACTAAAACCAC 57.024 29.630 35.86 24.38 45.22 4.16
2076 3789 5.883503 TTTGAACTAAAACCACGACAAGT 57.116 34.783 0.00 0.00 0.00 3.16
2078 3791 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
2082 3795 7.911205 TGAACTAAAACCACGACAAGTAATTTG 59.089 33.333 0.00 0.00 42.68 2.32
2084 3797 5.838531 AAAACCACGACAAGTAATTTGGA 57.161 34.783 0.00 0.00 41.25 3.53
2086 3799 4.823790 ACCACGACAAGTAATTTGGAAC 57.176 40.909 0.00 0.00 41.25 3.62
2087 3800 3.566742 ACCACGACAAGTAATTTGGAACC 59.433 43.478 0.00 0.00 41.25 3.62
2088 3801 3.364565 CCACGACAAGTAATTTGGAACCG 60.365 47.826 0.00 0.00 41.25 4.44
2092 3805 4.320870 GACAAGTAATTTGGAACCGAGGA 58.679 43.478 0.00 0.00 41.25 3.71
2097 3810 6.309389 AGTAATTTGGAACCGAGGAAGTAT 57.691 37.500 0.00 0.00 0.00 2.12
2112 3825 5.971763 AGGAAGTATGTGCTAGCTATATGC 58.028 41.667 17.23 10.69 43.29 3.14
2136 3850 6.138761 CACAAGCTAGTCTGTCATGTTTTTC 58.861 40.000 0.00 0.00 0.00 2.29
2146 3860 7.976175 AGTCTGTCATGTTTTTCCTTTTCTTTC 59.024 33.333 0.00 0.00 0.00 2.62
2158 3873 4.714308 TCCTTTTCTTTCTTGGAGGCAAAA 59.286 37.500 0.00 0.00 0.00 2.44
2242 3961 3.508402 TGTAATCAACGTCTCCTGTAGCA 59.492 43.478 0.00 0.00 0.00 3.49
2326 4048 4.344968 ACTGTTTTTAGCTGAATTTGGCCT 59.655 37.500 3.32 0.00 0.00 5.19
2333 4055 3.902218 AGCTGAATTTGGCCTATTAGCA 58.098 40.909 20.54 10.78 32.64 3.49
2341 4063 3.730215 TGGCCTATTAGCAAAACAGGA 57.270 42.857 3.32 0.00 0.00 3.86
2342 4064 4.249638 TGGCCTATTAGCAAAACAGGAT 57.750 40.909 3.32 0.00 0.00 3.24
2344 4066 5.376625 TGGCCTATTAGCAAAACAGGATAG 58.623 41.667 3.32 0.00 0.00 2.08
2348 4070 7.041303 GGCCTATTAGCAAAACAGGATAGTAAC 60.041 40.741 0.00 0.00 0.00 2.50
2350 4072 5.789710 TTAGCAAAACAGGATAGTAACGC 57.210 39.130 0.00 0.00 0.00 4.84
2353 4075 3.425758 GCAAAACAGGATAGTAACGCACC 60.426 47.826 0.00 0.00 0.00 5.01
2360 4082 5.105064 ACAGGATAGTAACGCACCATAAGTT 60.105 40.000 0.00 0.00 0.00 2.66
2363 4085 7.656137 CAGGATAGTAACGCACCATAAGTTATT 59.344 37.037 0.00 0.00 33.63 1.40
2365 4087 7.440255 GGATAGTAACGCACCATAAGTTATTGT 59.560 37.037 0.00 0.00 33.63 2.71
2366 4088 9.467258 GATAGTAACGCACCATAAGTTATTGTA 57.533 33.333 0.00 0.00 33.63 2.41
2372 4094 4.036380 GCACCATAAGTTATTGTAGGCCAC 59.964 45.833 5.01 1.31 0.00 5.01
2385 4107 2.323999 AGGCCACAAATGATCCCAAA 57.676 45.000 5.01 0.00 0.00 3.28
2387 4109 2.568509 AGGCCACAAATGATCCCAAAAG 59.431 45.455 5.01 0.00 0.00 2.27
2389 4111 3.244526 GGCCACAAATGATCCCAAAAGTT 60.245 43.478 0.00 0.00 0.00 2.66
2393 4115 6.092533 GCCACAAATGATCCCAAAAGTTTATG 59.907 38.462 0.00 0.00 0.00 1.90
2406 4128 6.239743 CCAAAAGTTTATGGGCCCTTAAAAGA 60.240 38.462 33.33 17.26 32.87 2.52
2408 4130 5.270979 AGTTTATGGGCCCTTAAAAGACT 57.729 39.130 33.33 26.47 30.81 3.24
2414 4136 5.069518 TGGGCCCTTAAAAGACTAAAAGT 57.930 39.130 25.70 0.00 0.00 2.66
2420 4142 8.582437 GGCCCTTAAAAGACTAAAAGTTAACAT 58.418 33.333 8.61 0.00 0.00 2.71
2432 4154 6.969993 AAAAGTTAACATAGGCTGGAAACA 57.030 33.333 8.61 0.00 39.59 2.83
2463 4185 0.106918 TCATGGGTCGTTAATGGGCC 60.107 55.000 0.00 0.00 0.00 5.80
2464 4186 0.395036 CATGGGTCGTTAATGGGCCA 60.395 55.000 9.61 9.61 0.00 5.36
2467 4189 0.815095 GGGTCGTTAATGGGCCAAAG 59.185 55.000 11.89 0.00 0.00 2.77
2469 4191 0.885196 GTCGTTAATGGGCCAAAGCA 59.115 50.000 11.89 0.00 42.56 3.91
2471 4193 2.094234 GTCGTTAATGGGCCAAAGCAAT 60.094 45.455 11.89 0.00 42.56 3.56
2476 4198 5.584251 CGTTAATGGGCCAAAGCAATTTTAT 59.416 36.000 11.89 0.00 42.56 1.40
2478 4200 7.278868 CGTTAATGGGCCAAAGCAATTTTATTA 59.721 33.333 11.89 0.00 42.56 0.98
2483 4205 7.170965 TGGGCCAAAGCAATTTTATTATTCAA 58.829 30.769 2.13 0.00 42.56 2.69
2485 4207 8.130469 GGGCCAAAGCAATTTTATTATTCAATG 58.870 33.333 4.39 0.00 42.56 2.82
2486 4208 7.644945 GGCCAAAGCAATTTTATTATTCAATGC 59.355 33.333 0.00 0.00 42.56 3.56
2500 4222 1.033746 CAATGCGGGCCAGAATCACT 61.034 55.000 7.23 0.00 0.00 3.41
2502 4224 0.767375 ATGCGGGCCAGAATCACTAT 59.233 50.000 7.23 0.00 0.00 2.12
2503 4225 0.179048 TGCGGGCCAGAATCACTATG 60.179 55.000 7.23 0.00 0.00 2.23
2508 4230 0.183492 GCCAGAATCACTATGGGCCA 59.817 55.000 9.61 9.61 35.42 5.36
2556 4279 4.698201 TCATAATATGGGCCGAAAGACA 57.302 40.909 0.00 0.00 0.00 3.41
2558 4281 5.245531 TCATAATATGGGCCGAAAGACATC 58.754 41.667 0.00 0.00 0.00 3.06
2559 4282 3.576078 AATATGGGCCGAAAGACATCA 57.424 42.857 0.00 0.00 0.00 3.07
2560 4283 3.576078 ATATGGGCCGAAAGACATCAA 57.424 42.857 0.00 0.00 0.00 2.57
2561 4284 2.214376 ATGGGCCGAAAGACATCAAA 57.786 45.000 0.00 0.00 0.00 2.69
2562 4285 2.214376 TGGGCCGAAAGACATCAAAT 57.786 45.000 0.00 0.00 0.00 2.32
2581 4304 7.429374 TCAAATGTCATATATGGGCCAAAAA 57.571 32.000 11.89 0.00 0.00 1.94
2585 4308 6.653526 TGTCATATATGGGCCAAAAATGAG 57.346 37.500 21.45 9.71 0.00 2.90
2588 4311 7.147976 GTCATATATGGGCCAAAAATGAGAAC 58.852 38.462 21.45 11.61 0.00 3.01
2589 4312 6.838090 TCATATATGGGCCAAAAATGAGAACA 59.162 34.615 11.89 0.00 0.00 3.18
2590 4313 7.344093 TCATATATGGGCCAAAAATGAGAACAA 59.656 33.333 11.89 0.00 0.00 2.83
2599 4322 5.636543 CCAAAAATGAGAACAAGCTGGAATC 59.363 40.000 0.00 0.00 0.00 2.52
2605 4328 6.688637 TGAGAACAAGCTGGAATCATATTG 57.311 37.500 0.00 0.00 0.00 1.90
2606 4329 6.417258 TGAGAACAAGCTGGAATCATATTGA 58.583 36.000 0.00 0.00 0.00 2.57
2613 4336 2.217750 TGGAATCATATTGAACGGCCG 58.782 47.619 26.86 26.86 0.00 6.13
2625 4348 0.535335 AACGGCCGACATGACACTAT 59.465 50.000 35.90 0.00 0.00 2.12
2632 4355 3.741388 GCCGACATGACACTATTAGGCTT 60.741 47.826 0.00 0.00 39.01 4.35
2635 4358 6.223852 CCGACATGACACTATTAGGCTTAAT 58.776 40.000 6.32 6.32 34.04 1.40
2651 4374 5.041287 GGCTTAATTCGGAAAGGCAATAAC 58.959 41.667 8.97 0.00 45.03 1.89
2661 4384 0.108329 AGGCAATAACGGGTCGTGAG 60.108 55.000 0.00 0.00 39.99 3.51
2662 4385 1.702491 GGCAATAACGGGTCGTGAGC 61.702 60.000 0.00 0.00 39.99 4.26
2690 4417 3.848272 AAATGGGTTATGTGCGAACAG 57.152 42.857 1.02 0.00 0.00 3.16
2694 4421 1.423845 GTTATGTGCGAACAGGCCG 59.576 57.895 1.02 0.00 0.00 6.13
2698 4425 0.392461 ATGTGCGAACAGGCCGTTAT 60.392 50.000 1.02 1.17 38.19 1.89
2700 4427 1.017177 GTGCGAACAGGCCGTTATCA 61.017 55.000 12.01 10.14 38.19 2.15
2702 4429 0.459585 GCGAACAGGCCGTTATCAGA 60.460 55.000 12.01 0.00 38.19 3.27
2716 4443 0.107017 ATCAGACTTTCCATGGGCCG 60.107 55.000 13.02 2.64 0.00 6.13
2719 4446 1.002624 GACTTTCCATGGGCCGACA 60.003 57.895 13.02 0.00 0.00 4.35
2721 4448 1.303236 CTTTCCATGGGCCGACACA 60.303 57.895 13.02 0.00 0.00 3.72
2724 4451 2.746412 TTCCATGGGCCGACACACTG 62.746 60.000 13.02 0.00 0.00 3.66
2731 4458 1.541670 GGGCCGACACACTGACTTTTA 60.542 52.381 0.00 0.00 0.00 1.52
2747 4474 4.417506 ACTTTTAACCAAGTCAAACGTGC 58.582 39.130 0.00 0.00 30.76 5.34
2750 4477 1.178276 AACCAAGTCAAACGTGCCAA 58.822 45.000 0.00 0.00 0.00 4.52
2752 4479 0.453793 CCAAGTCAAACGTGCCAACA 59.546 50.000 0.00 0.00 0.00 3.33
2764 4491 5.517322 ACGTGCCAACATTTTTAACCTAA 57.483 34.783 0.00 0.00 0.00 2.69
2769 4496 6.931840 GTGCCAACATTTTTAACCTAAATGGA 59.068 34.615 13.16 0.00 43.78 3.41
2775 4502 7.892609 ACATTTTTAACCTAAATGGACCACTC 58.107 34.615 13.16 0.00 43.78 3.51
2797 4524 2.977456 GCCATGCCACGTGTCACA 60.977 61.111 15.65 10.13 0.00 3.58
2800 4527 1.165907 CCATGCCACGTGTCACAGTT 61.166 55.000 15.65 0.00 0.00 3.16
2808 4535 2.157668 CACGTGTCACAGTTTCATAGGC 59.842 50.000 7.58 0.00 0.00 3.93
2811 4538 0.370273 GTCACAGTTTCATAGGCGCG 59.630 55.000 0.00 0.00 0.00 6.86
2813 4540 0.370273 CACAGTTTCATAGGCGCGTC 59.630 55.000 5.57 0.21 0.00 5.19
2824 4551 2.506217 GCGCGTCTCGTCCATTGA 60.506 61.111 8.43 0.00 41.07 2.57
2843 4570 5.425196 TTGAATGGATGACATCTCTCACA 57.575 39.130 14.95 4.76 39.40 3.58
2845 4572 5.997843 TGAATGGATGACATCTCTCACAAT 58.002 37.500 14.95 0.00 39.40 2.71
2847 4574 3.538591 TGGATGACATCTCTCACAATGC 58.461 45.455 14.95 0.00 0.00 3.56
2848 4575 3.199289 TGGATGACATCTCTCACAATGCT 59.801 43.478 14.95 0.00 0.00 3.79
2855 4582 3.797451 TCTCTCACAATGCTGAGCTAG 57.203 47.619 5.83 0.00 38.07 3.42
2869 4596 0.905357 AGCTAGCACGTGGATCCTTT 59.095 50.000 18.83 0.00 0.00 3.11
2871 4598 1.656652 CTAGCACGTGGATCCTTTGG 58.343 55.000 18.88 1.48 0.00 3.28
2877 4604 0.457035 CGTGGATCCTTTGGCCAATG 59.543 55.000 21.26 21.45 32.68 2.82
2881 4608 2.245546 TGGATCCTTTGGCCAATGAGAT 59.754 45.455 28.18 25.42 0.00 2.75
2885 4612 4.806640 TCCTTTGGCCAATGAGATTTTC 57.193 40.909 28.18 0.00 0.00 2.29
2889 4616 5.484715 CTTTGGCCAATGAGATTTTCACAT 58.515 37.500 23.59 0.00 38.99 3.21
2890 4617 4.459390 TGGCCAATGAGATTTTCACATG 57.541 40.909 0.61 0.00 38.99 3.21
2893 4620 4.082081 GGCCAATGAGATTTTCACATGTGA 60.082 41.667 24.56 24.56 38.99 3.58
2908 4635 5.048083 TCACATGTGAAAAATCCTAGTTGGC 60.048 40.000 26.02 0.00 36.53 4.52
2911 4638 3.161866 GTGAAAAATCCTAGTTGGCCCA 58.838 45.455 0.00 0.00 35.26 5.36
2913 4640 2.532250 AAAATCCTAGTTGGCCCAGG 57.468 50.000 0.00 1.35 35.26 4.45
2920 4647 1.212935 CTAGTTGGCCCAGGCTGTTAT 59.787 52.381 14.43 0.00 41.60 1.89
2933 4661 3.323979 AGGCTGTTATCGGTTATCGGATT 59.676 43.478 0.00 0.00 39.77 3.01
2949 4677 4.688511 CGGATTCAAACCGGAAATTACA 57.311 40.909 9.46 0.00 45.65 2.41
2950 4678 4.408694 CGGATTCAAACCGGAAATTACAC 58.591 43.478 9.46 0.00 45.65 2.90
2951 4679 4.155280 CGGATTCAAACCGGAAATTACACT 59.845 41.667 9.46 0.00 45.65 3.55
2952 4680 5.352016 CGGATTCAAACCGGAAATTACACTA 59.648 40.000 9.46 0.00 45.65 2.74
2953 4681 6.456449 CGGATTCAAACCGGAAATTACACTAG 60.456 42.308 9.46 0.00 45.65 2.57
2954 4682 6.373495 GGATTCAAACCGGAAATTACACTAGT 59.627 38.462 9.46 0.00 0.00 2.57
2955 4683 6.548441 TTCAAACCGGAAATTACACTAGTG 57.452 37.500 21.44 21.44 0.00 2.74
2956 4684 4.453136 TCAAACCGGAAATTACACTAGTGC 59.547 41.667 22.90 5.11 0.00 4.40
2957 4685 3.688694 ACCGGAAATTACACTAGTGCA 57.311 42.857 22.90 7.33 0.00 4.57
2958 4686 3.596214 ACCGGAAATTACACTAGTGCAG 58.404 45.455 22.90 5.99 0.00 4.41
2959 4687 3.259876 ACCGGAAATTACACTAGTGCAGA 59.740 43.478 22.90 9.19 0.00 4.26
2960 4688 4.250464 CCGGAAATTACACTAGTGCAGAA 58.750 43.478 22.90 14.34 0.00 3.02
2961 4689 4.693566 CCGGAAATTACACTAGTGCAGAAA 59.306 41.667 22.90 12.09 0.00 2.52
2962 4690 5.354234 CCGGAAATTACACTAGTGCAGAAAT 59.646 40.000 22.90 13.71 0.00 2.17
2963 4691 6.250819 CGGAAATTACACTAGTGCAGAAATG 58.749 40.000 22.90 3.47 0.00 2.32
2964 4692 6.555315 GGAAATTACACTAGTGCAGAAATGG 58.445 40.000 22.90 0.00 0.00 3.16
2965 4693 6.404734 GGAAATTACACTAGTGCAGAAATGGG 60.405 42.308 22.90 0.00 0.00 4.00
2966 4694 1.826385 ACACTAGTGCAGAAATGGGC 58.174 50.000 22.90 0.00 0.00 5.36
2967 4695 1.352352 ACACTAGTGCAGAAATGGGCT 59.648 47.619 22.90 0.00 0.00 5.19
2968 4696 2.571653 ACACTAGTGCAGAAATGGGCTA 59.428 45.455 22.90 0.00 0.00 3.93
2969 4697 3.200825 ACACTAGTGCAGAAATGGGCTAT 59.799 43.478 22.90 0.00 0.00 2.97
2970 4698 4.408921 ACACTAGTGCAGAAATGGGCTATA 59.591 41.667 22.90 0.00 0.00 1.31
2971 4699 4.993584 CACTAGTGCAGAAATGGGCTATAG 59.006 45.833 10.54 0.00 0.00 1.31
2972 4700 4.656112 ACTAGTGCAGAAATGGGCTATAGT 59.344 41.667 0.00 0.00 31.64 2.12
2973 4701 3.813443 AGTGCAGAAATGGGCTATAGTG 58.187 45.455 0.84 0.00 0.00 2.74
2974 4702 3.200825 AGTGCAGAAATGGGCTATAGTGT 59.799 43.478 0.84 0.00 0.00 3.55
2975 4703 3.947834 GTGCAGAAATGGGCTATAGTGTT 59.052 43.478 0.84 0.00 0.00 3.32
2976 4704 3.947196 TGCAGAAATGGGCTATAGTGTTG 59.053 43.478 0.84 0.00 0.00 3.33
2977 4705 3.316308 GCAGAAATGGGCTATAGTGTTGG 59.684 47.826 0.84 0.00 0.00 3.77
2978 4706 4.526970 CAGAAATGGGCTATAGTGTTGGT 58.473 43.478 0.84 0.00 0.00 3.67
2979 4707 4.949856 CAGAAATGGGCTATAGTGTTGGTT 59.050 41.667 0.84 0.00 0.00 3.67
2980 4708 5.066505 CAGAAATGGGCTATAGTGTTGGTTC 59.933 44.000 0.84 0.00 0.00 3.62
2981 4709 2.684001 TGGGCTATAGTGTTGGTTCG 57.316 50.000 0.84 0.00 0.00 3.95
2982 4710 1.903860 TGGGCTATAGTGTTGGTTCGT 59.096 47.619 0.84 0.00 0.00 3.85
2983 4711 2.277084 GGGCTATAGTGTTGGTTCGTG 58.723 52.381 0.84 0.00 0.00 4.35
2984 4712 2.093869 GGGCTATAGTGTTGGTTCGTGA 60.094 50.000 0.84 0.00 0.00 4.35
2985 4713 3.187700 GGCTATAGTGTTGGTTCGTGAG 58.812 50.000 0.84 0.00 0.00 3.51
2986 4714 3.187700 GCTATAGTGTTGGTTCGTGAGG 58.812 50.000 0.84 0.00 0.00 3.86
2987 4715 3.368116 GCTATAGTGTTGGTTCGTGAGGT 60.368 47.826 0.84 0.00 0.00 3.85
2988 4716 2.806608 TAGTGTTGGTTCGTGAGGTC 57.193 50.000 0.00 0.00 0.00 3.85
2989 4717 1.120530 AGTGTTGGTTCGTGAGGTCT 58.879 50.000 0.00 0.00 0.00 3.85
2990 4718 1.485066 AGTGTTGGTTCGTGAGGTCTT 59.515 47.619 0.00 0.00 0.00 3.01
2991 4719 2.093128 AGTGTTGGTTCGTGAGGTCTTT 60.093 45.455 0.00 0.00 0.00 2.52
2992 4720 2.681344 GTGTTGGTTCGTGAGGTCTTTT 59.319 45.455 0.00 0.00 0.00 2.27
2993 4721 3.872771 GTGTTGGTTCGTGAGGTCTTTTA 59.127 43.478 0.00 0.00 0.00 1.52
2994 4722 4.025145 GTGTTGGTTCGTGAGGTCTTTTAG 60.025 45.833 0.00 0.00 0.00 1.85
2995 4723 4.124970 GTTGGTTCGTGAGGTCTTTTAGT 58.875 43.478 0.00 0.00 0.00 2.24
2996 4724 3.724374 TGGTTCGTGAGGTCTTTTAGTG 58.276 45.455 0.00 0.00 0.00 2.74
2997 4725 2.479275 GGTTCGTGAGGTCTTTTAGTGC 59.521 50.000 0.00 0.00 0.00 4.40
2998 4726 2.450609 TCGTGAGGTCTTTTAGTGCC 57.549 50.000 0.00 0.00 0.00 5.01
2999 4727 1.068474 CGTGAGGTCTTTTAGTGCCG 58.932 55.000 0.00 0.00 0.00 5.69
3000 4728 1.439679 GTGAGGTCTTTTAGTGCCGG 58.560 55.000 0.00 0.00 0.00 6.13
3001 4729 1.053424 TGAGGTCTTTTAGTGCCGGT 58.947 50.000 1.90 0.00 0.00 5.28
3002 4730 1.418637 TGAGGTCTTTTAGTGCCGGTT 59.581 47.619 1.90 0.00 0.00 4.44
3003 4731 2.074576 GAGGTCTTTTAGTGCCGGTTC 58.925 52.381 1.90 0.00 0.00 3.62
3004 4732 1.162698 GGTCTTTTAGTGCCGGTTCC 58.837 55.000 1.90 0.00 0.00 3.62
3005 4733 1.543871 GGTCTTTTAGTGCCGGTTCCA 60.544 52.381 1.90 0.00 0.00 3.53
3006 4734 1.534163 GTCTTTTAGTGCCGGTTCCAC 59.466 52.381 1.90 2.40 0.00 4.02
3007 4735 1.141254 TCTTTTAGTGCCGGTTCCACA 59.859 47.619 12.43 0.00 35.69 4.17
3008 4736 1.265905 CTTTTAGTGCCGGTTCCACAC 59.734 52.381 12.43 7.19 35.69 3.82
3009 4737 0.881159 TTTAGTGCCGGTTCCACACG 60.881 55.000 12.43 0.00 39.31 4.49
3010 4738 1.746322 TTAGTGCCGGTTCCACACGA 61.746 55.000 12.43 1.18 39.31 4.35
3011 4739 1.746322 TAGTGCCGGTTCCACACGAA 61.746 55.000 12.43 0.00 39.31 3.85
3018 4746 2.613390 GTTCCACACGAACCAGGAC 58.387 57.895 0.00 0.00 44.46 3.85
3019 4747 0.883370 GTTCCACACGAACCAGGACC 60.883 60.000 0.00 0.00 44.46 4.46
3020 4748 1.338890 TTCCACACGAACCAGGACCA 61.339 55.000 0.00 0.00 0.00 4.02
3021 4749 1.147376 CCACACGAACCAGGACCAA 59.853 57.895 0.00 0.00 0.00 3.67
3022 4750 0.464735 CCACACGAACCAGGACCAAA 60.465 55.000 0.00 0.00 0.00 3.28
3023 4751 0.944386 CACACGAACCAGGACCAAAG 59.056 55.000 0.00 0.00 0.00 2.77
3024 4752 0.179029 ACACGAACCAGGACCAAAGG 60.179 55.000 0.00 0.00 0.00 3.11
3025 4753 1.228154 ACGAACCAGGACCAAAGGC 60.228 57.895 0.00 0.00 0.00 4.35
3026 4754 1.971695 CGAACCAGGACCAAAGGCC 60.972 63.158 0.00 0.00 0.00 5.19
3027 4755 1.606601 GAACCAGGACCAAAGGCCC 60.607 63.158 0.00 0.00 0.00 5.80
3028 4756 2.366153 GAACCAGGACCAAAGGCCCA 62.366 60.000 0.00 0.00 0.00 5.36
3029 4757 2.283173 CCAGGACCAAAGGCCCAC 60.283 66.667 0.00 0.00 0.00 4.61
3030 4758 2.283173 CAGGACCAAAGGCCCACC 60.283 66.667 0.00 0.00 0.00 4.61
3031 4759 2.780924 AGGACCAAAGGCCCACCA 60.781 61.111 0.00 0.00 39.06 4.17
3032 4760 2.169810 AGGACCAAAGGCCCACCAT 61.170 57.895 0.00 0.00 39.06 3.55
3033 4761 1.984026 GGACCAAAGGCCCACCATG 60.984 63.158 0.00 0.00 39.06 3.66
3034 4762 1.228862 GACCAAAGGCCCACCATGT 60.229 57.895 0.00 0.00 39.06 3.21
3035 4763 1.533753 ACCAAAGGCCCACCATGTG 60.534 57.895 0.00 0.00 39.06 3.21
3044 4772 2.669229 CACCATGTGGCACGAGCA 60.669 61.111 13.77 0.00 44.61 4.26
3045 4773 2.669569 ACCATGTGGCACGAGCAC 60.670 61.111 13.77 3.97 44.61 4.40
3046 4774 3.792047 CCATGTGGCACGAGCACG 61.792 66.667 13.77 0.76 44.61 5.34
3047 4775 4.450122 CATGTGGCACGAGCACGC 62.450 66.667 13.77 3.70 44.61 5.34
3079 4807 2.563297 GGGCTTTTAGTCCCGGTTG 58.437 57.895 0.00 0.00 32.63 3.77
3080 4808 0.963856 GGGCTTTTAGTCCCGGTTGG 60.964 60.000 0.00 0.00 32.63 3.77
3081 4809 0.037160 GGCTTTTAGTCCCGGTTGGA 59.963 55.000 0.00 0.00 42.41 3.53
3082 4810 1.450025 GCTTTTAGTCCCGGTTGGAG 58.550 55.000 0.00 0.00 46.38 3.86
3083 4811 1.450025 CTTTTAGTCCCGGTTGGAGC 58.550 55.000 0.00 0.00 46.38 4.70
3084 4812 0.037160 TTTTAGTCCCGGTTGGAGCC 59.963 55.000 0.00 0.00 46.38 4.70
3085 4813 1.844544 TTTAGTCCCGGTTGGAGCCC 61.845 60.000 0.00 0.00 46.38 5.19
3101 4829 4.910613 CCCCCTAGTCCCAGTTCA 57.089 61.111 0.00 0.00 0.00 3.18
3102 4830 3.098445 CCCCCTAGTCCCAGTTCAA 57.902 57.895 0.00 0.00 0.00 2.69
3103 4831 0.618981 CCCCCTAGTCCCAGTTCAAC 59.381 60.000 0.00 0.00 0.00 3.18
3104 4832 1.358152 CCCCTAGTCCCAGTTCAACA 58.642 55.000 0.00 0.00 0.00 3.33
3105 4833 1.003233 CCCCTAGTCCCAGTTCAACAC 59.997 57.143 0.00 0.00 0.00 3.32
3106 4834 1.337823 CCCTAGTCCCAGTTCAACACG 60.338 57.143 0.00 0.00 0.00 4.49
3107 4835 1.616865 CCTAGTCCCAGTTCAACACGA 59.383 52.381 0.00 0.00 0.00 4.35
3108 4836 2.036733 CCTAGTCCCAGTTCAACACGAA 59.963 50.000 0.00 0.00 0.00 3.85
3117 4845 2.404923 TTCAACACGAACCAGAACCA 57.595 45.000 0.00 0.00 0.00 3.67
3118 4846 2.404923 TCAACACGAACCAGAACCAA 57.595 45.000 0.00 0.00 0.00 3.67
3119 4847 2.712709 TCAACACGAACCAGAACCAAA 58.287 42.857 0.00 0.00 0.00 3.28
3120 4848 2.680841 TCAACACGAACCAGAACCAAAG 59.319 45.455 0.00 0.00 0.00 2.77
3121 4849 1.675552 ACACGAACCAGAACCAAAGG 58.324 50.000 0.00 0.00 0.00 3.11
3122 4850 0.310854 CACGAACCAGAACCAAAGGC 59.689 55.000 0.00 0.00 0.00 4.35
3123 4851 0.822121 ACGAACCAGAACCAAAGGCC 60.822 55.000 0.00 0.00 0.00 5.19
3124 4852 1.524008 CGAACCAGAACCAAAGGCCC 61.524 60.000 0.00 0.00 0.00 5.80
3125 4853 0.469144 GAACCAGAACCAAAGGCCCA 60.469 55.000 0.00 0.00 0.00 5.36
3126 4854 0.759060 AACCAGAACCAAAGGCCCAC 60.759 55.000 0.00 0.00 0.00 4.61
3127 4855 1.153756 CCAGAACCAAAGGCCCACT 59.846 57.895 0.00 0.00 0.00 4.00
3128 4856 1.181098 CCAGAACCAAAGGCCCACTG 61.181 60.000 0.00 0.00 0.00 3.66
3129 4857 0.178992 CAGAACCAAAGGCCCACTGA 60.179 55.000 0.00 0.00 0.00 3.41
3130 4858 0.111253 AGAACCAAAGGCCCACTGAG 59.889 55.000 0.00 0.00 0.00 3.35
3131 4859 0.895559 GAACCAAAGGCCCACTGAGG 60.896 60.000 0.00 0.00 37.03 3.86
3140 4868 3.719121 CCACTGAGGGAGTCCTGG 58.281 66.667 9.58 4.44 45.05 4.45
3141 4869 1.079256 CCACTGAGGGAGTCCTGGA 59.921 63.158 9.58 0.00 45.05 3.86
3142 4870 0.326048 CCACTGAGGGAGTCCTGGAT 60.326 60.000 9.58 0.00 45.05 3.41
3143 4871 1.577736 CACTGAGGGAGTCCTGGATT 58.422 55.000 9.58 0.00 45.05 3.01
3144 4872 2.626950 CCACTGAGGGAGTCCTGGATTA 60.627 54.545 9.58 0.00 45.05 1.75
3145 4873 2.697751 CACTGAGGGAGTCCTGGATTAG 59.302 54.545 9.58 2.27 45.05 1.73
3146 4874 2.324541 CTGAGGGAGTCCTGGATTAGG 58.675 57.143 9.58 0.00 45.05 2.69
3154 4882 2.855669 CCTGGATTAGGGGGTCTCC 58.144 63.158 0.00 0.00 43.33 3.71
3155 4883 1.122019 CCTGGATTAGGGGGTCTCCG 61.122 65.000 0.00 0.00 43.33 4.63
3156 4884 1.074775 TGGATTAGGGGGTCTCCGG 60.075 63.158 0.00 0.00 36.01 5.14
3157 4885 1.235112 GGATTAGGGGGTCTCCGGA 59.765 63.158 2.93 2.93 36.01 5.14
3158 4886 1.120184 GGATTAGGGGGTCTCCGGAC 61.120 65.000 0.00 0.00 41.43 4.79
3159 4887 0.398098 GATTAGGGGGTCTCCGGACA 60.398 60.000 0.00 0.00 43.77 4.02
3160 4888 0.398664 ATTAGGGGGTCTCCGGACAG 60.399 60.000 0.00 0.00 43.77 3.51
3161 4889 3.674050 TAGGGGGTCTCCGGACAGC 62.674 68.421 0.00 0.00 43.77 4.40
3174 4902 1.926108 GGACAGCCGGACTATATCCT 58.074 55.000 5.05 0.00 46.69 3.24
3175 4903 2.249139 GGACAGCCGGACTATATCCTT 58.751 52.381 5.05 0.00 46.69 3.36
3176 4904 2.633481 GGACAGCCGGACTATATCCTTT 59.367 50.000 5.05 0.00 46.69 3.11
3177 4905 3.555168 GGACAGCCGGACTATATCCTTTG 60.555 52.174 5.05 0.00 46.69 2.77
3178 4906 2.368875 ACAGCCGGACTATATCCTTTGG 59.631 50.000 5.05 0.00 46.69 3.28
3179 4907 1.348036 AGCCGGACTATATCCTTTGGC 59.652 52.381 5.05 3.00 46.71 4.52
3180 4908 1.610886 GCCGGACTATATCCTTTGGCC 60.611 57.143 5.05 0.00 46.69 5.36
3181 4909 1.337823 CCGGACTATATCCTTTGGCCG 60.338 57.143 0.00 0.00 46.69 6.13
3182 4910 1.616865 CGGACTATATCCTTTGGCCGA 59.383 52.381 0.00 0.00 46.69 5.54
3183 4911 2.036733 CGGACTATATCCTTTGGCCGAA 59.963 50.000 5.01 5.01 46.69 4.30
3184 4912 3.400255 GGACTATATCCTTTGGCCGAAC 58.600 50.000 0.00 0.00 45.22 3.95
3185 4913 3.071167 GGACTATATCCTTTGGCCGAACT 59.929 47.826 0.00 0.00 45.22 3.01
3186 4914 4.058817 GACTATATCCTTTGGCCGAACTG 58.941 47.826 0.00 0.00 0.00 3.16
3187 4915 3.454812 ACTATATCCTTTGGCCGAACTGT 59.545 43.478 0.00 0.00 0.00 3.55
3188 4916 2.871096 TATCCTTTGGCCGAACTGTT 57.129 45.000 0.00 0.00 0.00 3.16
3189 4917 1.247567 ATCCTTTGGCCGAACTGTTG 58.752 50.000 0.00 0.00 0.00 3.33
3190 4918 0.821711 TCCTTTGGCCGAACTGTTGG 60.822 55.000 0.00 1.04 0.00 3.77
3191 4919 0.821711 CCTTTGGCCGAACTGTTGGA 60.822 55.000 0.00 0.00 0.00 3.53
3192 4920 0.310854 CTTTGGCCGAACTGTTGGAC 59.689 55.000 0.00 6.08 0.00 4.02
3193 4921 0.106918 TTTGGCCGAACTGTTGGACT 60.107 50.000 0.00 0.00 33.02 3.85
3194 4922 0.759959 TTGGCCGAACTGTTGGACTA 59.240 50.000 13.54 5.90 33.02 2.59
3195 4923 0.981183 TGGCCGAACTGTTGGACTAT 59.019 50.000 13.54 0.00 33.02 2.12
3196 4924 1.338674 TGGCCGAACTGTTGGACTATG 60.339 52.381 13.54 0.00 33.02 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.150348 CCTAGCCAAAAAGTAAAAATGGTTATG 57.850 33.333 0.00 0.00 33.63 1.90
50 52 2.999185 AACCATTTGACATCCCACCT 57.001 45.000 0.00 0.00 0.00 4.00
86 88 3.387699 CCTTTGTCCCTCAAACCAAACAT 59.612 43.478 0.00 0.00 40.56 2.71
96 98 3.646715 CCCGCCCTTTGTCCCTCA 61.647 66.667 0.00 0.00 0.00 3.86
110 112 4.383173 GGGTTATCATAACAACCTACCCG 58.617 47.826 9.79 0.00 43.17 5.28
155 157 3.055458 CACCACCCTTTGTCAACCTTTTT 60.055 43.478 0.00 0.00 0.00 1.94
160 162 0.396556 ACCACCACCCTTTGTCAACC 60.397 55.000 0.00 0.00 0.00 3.77
161 163 1.407618 GAACCACCACCCTTTGTCAAC 59.592 52.381 0.00 0.00 0.00 3.18
162 164 1.770294 GAACCACCACCCTTTGTCAA 58.230 50.000 0.00 0.00 0.00 3.18
163 165 0.464735 CGAACCACCACCCTTTGTCA 60.465 55.000 0.00 0.00 0.00 3.58
210 215 0.107831 AGCTAAACGAAGCCCACACA 59.892 50.000 0.00 0.00 43.86 3.72
308 325 8.132995 ACGTAGAATTTTAACTCAAACTTTGGG 58.867 33.333 0.00 0.00 37.11 4.12
312 329 8.356533 TCGACGTAGAATTTTAACTCAAACTT 57.643 30.769 0.00 0.00 0.00 2.66
332 349 0.792640 ACAAGCTCAATTGCTCGACG 59.207 50.000 0.00 0.00 43.24 5.12
421 444 7.600039 CGTCTGTATTGTGTTCAAAACAAAAG 58.400 34.615 0.00 0.00 41.61 2.27
422 445 6.034044 GCGTCTGTATTGTGTTCAAAACAAAA 59.966 34.615 0.00 0.00 44.16 2.44
423 446 5.513495 GCGTCTGTATTGTGTTCAAAACAAA 59.487 36.000 0.00 0.00 44.16 2.83
424 447 5.031578 GCGTCTGTATTGTGTTCAAAACAA 58.968 37.500 0.00 0.00 44.16 2.83
425 448 4.095036 TGCGTCTGTATTGTGTTCAAAACA 59.905 37.500 0.00 0.00 39.52 2.83
426 449 4.593157 TGCGTCTGTATTGTGTTCAAAAC 58.407 39.130 0.00 0.00 37.11 2.43
427 450 4.884458 TGCGTCTGTATTGTGTTCAAAA 57.116 36.364 0.00 0.00 37.11 2.44
449 472 1.209128 GCGTGTATGTATGAGCGCTT 58.791 50.000 13.26 0.00 41.37 4.68
469 492 1.850441 CGTGCATAGCGGTAAGTGTAC 59.150 52.381 0.00 2.42 0.00 2.90
476 499 0.664761 GTAGGACGTGCATAGCGGTA 59.335 55.000 10.52 0.00 0.00 4.02
480 503 1.069258 GGGGTAGGACGTGCATAGC 59.931 63.158 10.52 8.33 0.00 2.97
541 612 0.119155 TCAGTGGGAGGGGATGTTCT 59.881 55.000 0.00 0.00 0.00 3.01
549 620 1.296715 CGTCCTTTCAGTGGGAGGG 59.703 63.158 11.33 2.05 34.86 4.30
594 665 4.960938 AGTCCTGATGCTCGCATTATTTA 58.039 39.130 5.79 0.00 36.70 1.40
609 680 1.074090 TGTCCACCCCAAGTCCTGA 60.074 57.895 0.00 0.00 0.00 3.86
619 690 1.533033 CCCCAAAACCTGTCCACCC 60.533 63.158 0.00 0.00 0.00 4.61
620 691 1.112916 CACCCCAAAACCTGTCCACC 61.113 60.000 0.00 0.00 0.00 4.61
621 692 1.112916 CCACCCCAAAACCTGTCCAC 61.113 60.000 0.00 0.00 0.00 4.02
622 693 1.231641 CCACCCCAAAACCTGTCCA 59.768 57.895 0.00 0.00 0.00 4.02
623 694 1.533033 CCCACCCCAAAACCTGTCC 60.533 63.158 0.00 0.00 0.00 4.02
624 695 0.114364 ATCCCACCCCAAAACCTGTC 59.886 55.000 0.00 0.00 0.00 3.51
625 696 0.178935 CATCCCACCCCAAAACCTGT 60.179 55.000 0.00 0.00 0.00 4.00
626 697 0.904394 CCATCCCACCCCAAAACCTG 60.904 60.000 0.00 0.00 0.00 4.00
627 698 1.077298 TCCATCCCACCCCAAAACCT 61.077 55.000 0.00 0.00 0.00 3.50
628 699 0.178918 TTCCATCCCACCCCAAAACC 60.179 55.000 0.00 0.00 0.00 3.27
629 700 1.554617 CATTCCATCCCACCCCAAAAC 59.445 52.381 0.00 0.00 0.00 2.43
630 701 1.554353 CCATTCCATCCCACCCCAAAA 60.554 52.381 0.00 0.00 0.00 2.44
631 702 0.042431 CCATTCCATCCCACCCCAAA 59.958 55.000 0.00 0.00 0.00 3.28
632 703 1.702840 CCATTCCATCCCACCCCAA 59.297 57.895 0.00 0.00 0.00 4.12
633 704 3.007684 GCCATTCCATCCCACCCCA 62.008 63.158 0.00 0.00 0.00 4.96
634 705 2.123295 GCCATTCCATCCCACCCC 60.123 66.667 0.00 0.00 0.00 4.95
635 706 1.456331 CTGCCATTCCATCCCACCC 60.456 63.158 0.00 0.00 0.00 4.61
636 707 0.753111 GTCTGCCATTCCATCCCACC 60.753 60.000 0.00 0.00 0.00 4.61
637 708 1.097547 CGTCTGCCATTCCATCCCAC 61.098 60.000 0.00 0.00 0.00 4.61
638 709 1.224315 CGTCTGCCATTCCATCCCA 59.776 57.895 0.00 0.00 0.00 4.37
642 713 2.027192 ACTTACACGTCTGCCATTCCAT 60.027 45.455 0.00 0.00 0.00 3.41
652 744 0.524862 CCGTAGCCACTTACACGTCT 59.475 55.000 0.00 0.00 32.66 4.18
744 2228 0.105964 CCAACGCGATCCCCTATCAA 59.894 55.000 15.93 0.00 33.87 2.57
753 2237 1.975837 TTTTGCAATCCAACGCGATC 58.024 45.000 15.93 0.00 31.97 3.69
777 2261 0.391927 TTTGGACATAGCGGTTCGGG 60.392 55.000 0.00 0.00 0.00 5.14
781 2265 3.613910 GCAACAATTTGGACATAGCGGTT 60.614 43.478 0.00 0.00 32.81 4.44
795 2279 3.389221 CTTTAAACCGCCTGCAACAATT 58.611 40.909 0.00 0.00 0.00 2.32
798 2282 0.671251 CCTTTAAACCGCCTGCAACA 59.329 50.000 0.00 0.00 0.00 3.33
819 2303 6.769134 TCTTTAGGTACATCTTCATCACGA 57.231 37.500 0.00 0.00 0.00 4.35
866 2350 2.752903 CCACTACCAACCAACAATAGGC 59.247 50.000 0.00 0.00 0.00 3.93
945 2437 4.574828 TGCCGTTAAAAGATGAAGGATAGC 59.425 41.667 0.00 0.00 0.00 2.97
950 2442 6.751888 CCTTTTATGCCGTTAAAAGATGAAGG 59.248 38.462 18.11 0.00 45.63 3.46
952 2444 7.455641 TCCTTTTATGCCGTTAAAAGATGAA 57.544 32.000 18.11 5.38 45.63 2.57
967 2459 3.311486 TTTTTGCGGGCTCCTTTTATG 57.689 42.857 0.00 0.00 0.00 1.90
988 2484 3.317406 ACTTGGAAATGGGCTCCTTTTT 58.683 40.909 6.56 1.46 32.25 1.94
989 2485 2.976440 ACTTGGAAATGGGCTCCTTTT 58.024 42.857 5.23 5.23 34.30 2.27
990 2486 2.634453 CAACTTGGAAATGGGCTCCTTT 59.366 45.455 0.00 0.00 33.77 3.11
992 2488 1.147817 ACAACTTGGAAATGGGCTCCT 59.852 47.619 0.00 0.00 33.77 3.69
994 2490 3.826729 ACTTACAACTTGGAAATGGGCTC 59.173 43.478 0.00 0.00 0.00 4.70
995 2491 3.826729 GACTTACAACTTGGAAATGGGCT 59.173 43.478 0.00 0.00 0.00 5.19
996 2492 3.056821 GGACTTACAACTTGGAAATGGGC 60.057 47.826 0.00 0.00 0.00 5.36
998 2494 3.190535 CGGGACTTACAACTTGGAAATGG 59.809 47.826 0.00 0.00 0.00 3.16
999 2495 3.818773 ACGGGACTTACAACTTGGAAATG 59.181 43.478 0.00 0.00 0.00 2.32
1000 2496 4.094830 ACGGGACTTACAACTTGGAAAT 57.905 40.909 0.00 0.00 0.00 2.17
1001 2497 3.564053 ACGGGACTTACAACTTGGAAA 57.436 42.857 0.00 0.00 0.00 3.13
1002 2498 3.564053 AACGGGACTTACAACTTGGAA 57.436 42.857 0.00 0.00 0.00 3.53
1003 2499 3.564053 AAACGGGACTTACAACTTGGA 57.436 42.857 0.00 0.00 0.00 3.53
1004 2500 5.952526 ATAAAACGGGACTTACAACTTGG 57.047 39.130 0.00 0.00 0.00 3.61
1005 2501 8.637281 AAAAATAAAACGGGACTTACAACTTG 57.363 30.769 0.00 0.00 0.00 3.16
1006 2502 7.922278 GGAAAAATAAAACGGGACTTACAACTT 59.078 33.333 0.00 0.00 0.00 2.66
1007 2503 7.286087 AGGAAAAATAAAACGGGACTTACAACT 59.714 33.333 0.00 0.00 0.00 3.16
1008 2504 7.428020 AGGAAAAATAAAACGGGACTTACAAC 58.572 34.615 0.00 0.00 0.00 3.32
1009 2505 7.585579 AGGAAAAATAAAACGGGACTTACAA 57.414 32.000 0.00 0.00 0.00 2.41
1010 2506 7.585579 AAGGAAAAATAAAACGGGACTTACA 57.414 32.000 0.00 0.00 0.00 2.41
1039 2544 1.339151 GCTGAAACGGGTGAGAAGGAT 60.339 52.381 0.00 0.00 0.00 3.24
1088 2593 1.135286 GGCTGATGCAAGTTGTAAGCC 60.135 52.381 17.49 17.49 41.70 4.35
1147 2652 3.691118 ACATATGGTACTTGCTTGCTGTG 59.309 43.478 7.80 0.00 0.00 3.66
1185 2690 6.235231 ACTGATCCAGTCGGTTGTTTATAT 57.765 37.500 0.00 0.00 44.07 0.86
1195 2700 5.107133 ACGTAATTAAACTGATCCAGTCGG 58.893 41.667 0.00 0.00 44.62 4.79
1239 2745 4.040461 TCGGGAAGGTCATCATTTCCTATC 59.960 45.833 2.87 0.00 40.17 2.08
1261 2767 7.103641 TCCTATGAATGTCAACCTTGTAGTTC 58.896 38.462 0.00 0.00 0.00 3.01
1262 2768 7.016153 TCCTATGAATGTCAACCTTGTAGTT 57.984 36.000 0.00 0.00 0.00 2.24
1279 2785 3.007940 CCAAATACGATGGGCTCCTATGA 59.992 47.826 0.00 0.00 34.15 2.15
1280 2786 3.244561 ACCAAATACGATGGGCTCCTATG 60.245 47.826 0.00 0.00 42.48 2.23
1325 2835 6.662865 TTTGCCAAATGAAAAGGATAGACA 57.337 33.333 0.00 0.00 0.00 3.41
1349 2859 6.180472 GGTGTATATATAAGCCAGCCATTGT 58.820 40.000 0.00 0.00 0.00 2.71
1350 2860 5.590259 GGGTGTATATATAAGCCAGCCATTG 59.410 44.000 18.36 0.00 41.96 2.82
1352 2862 4.166144 GGGGTGTATATATAAGCCAGCCAT 59.834 45.833 22.02 0.00 43.65 4.40
1414 2927 4.027437 AGAAGTTAAAGTTTGGGGTTGCA 58.973 39.130 0.00 0.00 0.00 4.08
1419 2932 5.297527 ACACGTAAGAAGTTAAAGTTTGGGG 59.702 40.000 0.00 0.00 43.62 4.96
1715 3390 4.816984 TCGTCCTCCTCGCCTCCC 62.817 72.222 0.00 0.00 0.00 4.30
1854 3529 1.524002 CGATCATGTCCTGCACCCT 59.476 57.895 0.00 0.00 0.00 4.34
2001 3676 4.514816 CGGAGGGAGTAGTAGTAAACTAGC 59.485 50.000 0.00 0.00 41.42 3.42
2035 3713 7.599245 AGTTCAAATTTGTAAAACCACGACAAA 59.401 29.630 17.47 2.25 44.63 2.83
2044 3722 9.678247 CGTGGTTTTAGTTCAAATTTGTAAAAC 57.322 29.630 27.49 27.49 40.47 2.43
2045 3723 9.635520 TCGTGGTTTTAGTTCAAATTTGTAAAA 57.364 25.926 17.47 16.41 0.00 1.52
2046 3724 9.074443 GTCGTGGTTTTAGTTCAAATTTGTAAA 57.926 29.630 17.47 12.00 0.00 2.01
2047 3725 8.242053 TGTCGTGGTTTTAGTTCAAATTTGTAA 58.758 29.630 17.47 6.83 0.00 2.41
2050 3728 7.274686 ACTTGTCGTGGTTTTAGTTCAAATTTG 59.725 33.333 12.15 12.15 0.00 2.32
2052 3730 6.859017 ACTTGTCGTGGTTTTAGTTCAAATT 58.141 32.000 0.00 0.00 0.00 1.82
2053 3731 6.445357 ACTTGTCGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
2055 3733 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
2058 3771 7.067251 TCCAAATTACTTGTCGTGGTTTTAGTT 59.933 33.333 0.00 0.00 32.65 2.24
2060 3773 6.961576 TCCAAATTACTTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 32.65 1.85
2064 3777 4.037089 GGTTCCAAATTACTTGTCGTGGTT 59.963 41.667 0.00 0.00 32.65 3.67
2065 3778 3.566742 GGTTCCAAATTACTTGTCGTGGT 59.433 43.478 0.00 0.00 32.65 4.16
2066 3779 3.364565 CGGTTCCAAATTACTTGTCGTGG 60.365 47.826 0.00 0.00 32.65 4.94
2067 3780 3.495377 TCGGTTCCAAATTACTTGTCGTG 59.505 43.478 0.00 0.00 32.65 4.35
2069 3782 3.124636 CCTCGGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
2076 3789 5.878116 CACATACTTCCTCGGTTCCAAATTA 59.122 40.000 0.00 0.00 0.00 1.40
2078 3791 4.261801 CACATACTTCCTCGGTTCCAAAT 58.738 43.478 0.00 0.00 0.00 2.32
2082 3795 1.207329 AGCACATACTTCCTCGGTTCC 59.793 52.381 0.00 0.00 0.00 3.62
2084 3797 2.159085 GCTAGCACATACTTCCTCGGTT 60.159 50.000 10.63 0.00 0.00 4.44
2086 3799 1.683917 AGCTAGCACATACTTCCTCGG 59.316 52.381 18.83 0.00 0.00 4.63
2087 3800 4.775058 ATAGCTAGCACATACTTCCTCG 57.225 45.455 18.83 0.00 0.00 4.63
2088 3801 6.039616 GCATATAGCTAGCACATACTTCCTC 58.960 44.000 18.83 0.00 41.15 3.71
2112 3825 5.679734 AAAACATGACAGACTAGCTTGTG 57.320 39.130 5.27 0.00 0.00 3.33
2136 3850 4.670896 TTTGCCTCCAAGAAAGAAAAGG 57.329 40.909 0.00 0.00 31.52 3.11
2146 3860 4.761739 TGACAGATTAGTTTTGCCTCCAAG 59.238 41.667 0.00 0.00 31.52 3.61
2197 3916 4.844349 AAGGTACAGGACTATGCACATT 57.156 40.909 0.00 0.00 0.00 2.71
2198 3917 4.844349 AAAGGTACAGGACTATGCACAT 57.156 40.909 0.00 0.00 0.00 3.21
2242 3961 6.131972 TGAAACAGAGAGGAAAATCCAGAT 57.868 37.500 0.00 0.00 39.61 2.90
2309 4031 5.890985 TGCTAATAGGCCAAATTCAGCTAAA 59.109 36.000 5.01 0.00 0.00 1.85
2310 4032 5.445069 TGCTAATAGGCCAAATTCAGCTAA 58.555 37.500 5.01 0.00 0.00 3.09
2311 4033 5.047566 TGCTAATAGGCCAAATTCAGCTA 57.952 39.130 5.01 3.88 0.00 3.32
2326 4048 7.010738 GTGCGTTACTATCCTGTTTTGCTAATA 59.989 37.037 0.00 0.00 0.00 0.98
2333 4055 4.010667 TGGTGCGTTACTATCCTGTTTT 57.989 40.909 0.00 0.00 0.00 2.43
2341 4063 9.472361 CTACAATAACTTATGGTGCGTTACTAT 57.528 33.333 0.00 0.00 34.56 2.12
2342 4064 7.922278 CCTACAATAACTTATGGTGCGTTACTA 59.078 37.037 0.00 0.00 0.00 1.82
2344 4066 6.510638 GCCTACAATAACTTATGGTGCGTTAC 60.511 42.308 0.00 0.00 0.00 2.50
2348 4070 3.250040 GGCCTACAATAACTTATGGTGCG 59.750 47.826 0.00 0.00 0.00 5.34
2350 4072 5.189928 TGTGGCCTACAATAACTTATGGTG 58.810 41.667 3.32 0.00 36.06 4.17
2363 4085 1.638070 TGGGATCATTTGTGGCCTACA 59.362 47.619 3.32 3.84 37.56 2.74
2365 4087 3.464720 TTTGGGATCATTTGTGGCCTA 57.535 42.857 3.32 0.00 0.00 3.93
2366 4088 2.323999 TTTGGGATCATTTGTGGCCT 57.676 45.000 3.32 0.00 0.00 5.19
2385 4107 5.651303 AGTCTTTTAAGGGCCCATAAACTT 58.349 37.500 27.72 13.72 0.00 2.66
2387 4109 7.470935 TTTAGTCTTTTAAGGGCCCATAAAC 57.529 36.000 27.72 18.89 0.00 2.01
2389 4111 7.243091 ACTTTTAGTCTTTTAAGGGCCCATAA 58.757 34.615 27.56 21.15 0.00 1.90
2393 4115 7.014518 TGTTAACTTTTAGTCTTTTAAGGGCCC 59.985 37.037 16.46 16.46 0.00 5.80
2402 4124 8.161425 TCCAGCCTATGTTAACTTTTAGTCTTT 58.839 33.333 7.22 0.00 0.00 2.52
2406 4128 7.722285 TGTTTCCAGCCTATGTTAACTTTTAGT 59.278 33.333 7.22 0.00 0.00 2.24
2408 4130 7.940137 TCTGTTTCCAGCCTATGTTAACTTTTA 59.060 33.333 7.22 0.00 38.66 1.52
2414 4136 4.042311 TGGTCTGTTTCCAGCCTATGTTAA 59.958 41.667 0.00 0.00 38.66 2.01
2420 4142 2.054799 AGTTGGTCTGTTTCCAGCCTA 58.945 47.619 0.00 0.00 38.66 3.93
2432 4154 2.355108 CGACCCATGATTCAGTTGGTCT 60.355 50.000 20.68 3.31 40.04 3.85
2434 4156 1.351017 ACGACCCATGATTCAGTTGGT 59.649 47.619 0.00 5.21 0.00 3.67
2463 4185 7.851963 CCCGCATTGAATAATAAAATTGCTTTG 59.148 33.333 0.00 0.00 0.00 2.77
2464 4186 7.467131 GCCCGCATTGAATAATAAAATTGCTTT 60.467 33.333 0.00 0.00 0.00 3.51
2467 4189 5.334028 GGCCCGCATTGAATAATAAAATTGC 60.334 40.000 0.00 0.00 0.00 3.56
2469 4191 5.923204 TGGCCCGCATTGAATAATAAAATT 58.077 33.333 0.00 0.00 0.00 1.82
2471 4193 4.646945 TCTGGCCCGCATTGAATAATAAAA 59.353 37.500 0.00 0.00 0.00 1.52
2476 4198 2.136298 TTCTGGCCCGCATTGAATAA 57.864 45.000 0.00 0.00 0.00 1.40
2478 4200 1.035139 GATTCTGGCCCGCATTGAAT 58.965 50.000 0.00 0.59 0.00 2.57
2483 4205 0.767375 ATAGTGATTCTGGCCCGCAT 59.233 50.000 0.00 0.00 0.00 4.73
2485 4207 0.886490 CCATAGTGATTCTGGCCCGC 60.886 60.000 0.00 0.00 0.00 6.13
2486 4208 0.250467 CCCATAGTGATTCTGGCCCG 60.250 60.000 0.00 0.00 0.00 6.13
2506 4228 7.201911 CCTTTTGTATCTTTAGGCCCTTAATGG 60.202 40.741 0.00 0.00 0.00 3.16
2508 4230 6.323996 GCCTTTTGTATCTTTAGGCCCTTAAT 59.676 38.462 0.00 0.00 44.38 1.40
2520 4243 9.028284 CCCATATTATGATGCCTTTTGTATCTT 57.972 33.333 5.21 0.00 37.04 2.40
2534 4257 5.241403 TGTCTTTCGGCCCATATTATGAT 57.759 39.130 5.21 0.00 0.00 2.45
2540 4263 3.576078 TTGATGTCTTTCGGCCCATAT 57.424 42.857 0.00 0.00 0.00 1.78
2541 4264 3.358111 TTTGATGTCTTTCGGCCCATA 57.642 42.857 0.00 0.00 0.00 2.74
2542 4265 2.214376 TTTGATGTCTTTCGGCCCAT 57.786 45.000 0.00 0.00 0.00 4.00
2556 4279 7.615039 TTTTGGCCCATATATGACATTTGAT 57.385 32.000 14.54 0.00 0.00 2.57
2558 4281 7.932491 TCATTTTTGGCCCATATATGACATTTG 59.068 33.333 14.54 0.00 0.00 2.32
2559 4282 8.032045 TCATTTTTGGCCCATATATGACATTT 57.968 30.769 14.54 0.00 0.00 2.32
2560 4283 7.510001 TCTCATTTTTGGCCCATATATGACATT 59.490 33.333 14.54 0.00 0.00 2.71
2561 4284 7.011994 TCTCATTTTTGGCCCATATATGACAT 58.988 34.615 14.54 0.00 0.00 3.06
2562 4285 6.372104 TCTCATTTTTGGCCCATATATGACA 58.628 36.000 14.54 7.36 0.00 3.58
2564 4287 6.838090 TGTTCTCATTTTTGGCCCATATATGA 59.162 34.615 14.54 7.01 0.00 2.15
2569 4292 4.322650 GCTTGTTCTCATTTTTGGCCCATA 60.323 41.667 0.00 0.00 0.00 2.74
2581 4304 7.058525 TCAATATGATTCCAGCTTGTTCTCAT 58.941 34.615 0.00 0.00 0.00 2.90
2585 4308 5.967674 CGTTCAATATGATTCCAGCTTGTTC 59.032 40.000 0.00 0.00 0.00 3.18
2588 4311 4.790766 GCCGTTCAATATGATTCCAGCTTG 60.791 45.833 0.00 0.00 0.00 4.01
2589 4312 3.316308 GCCGTTCAATATGATTCCAGCTT 59.684 43.478 0.00 0.00 0.00 3.74
2590 4313 2.880890 GCCGTTCAATATGATTCCAGCT 59.119 45.455 0.00 0.00 0.00 4.24
2599 4322 2.032894 GTCATGTCGGCCGTTCAATATG 60.033 50.000 27.15 18.87 0.00 1.78
2605 4328 0.108992 TAGTGTCATGTCGGCCGTTC 60.109 55.000 27.15 19.50 0.00 3.95
2606 4329 0.535335 ATAGTGTCATGTCGGCCGTT 59.465 50.000 27.15 8.73 0.00 4.44
2613 4336 7.095607 CCGAATTAAGCCTAATAGTGTCATGTC 60.096 40.741 0.00 0.00 0.00 3.06
2625 4348 3.958018 TGCCTTTCCGAATTAAGCCTAA 58.042 40.909 0.00 0.00 0.00 2.69
2632 4355 3.628487 CCCGTTATTGCCTTTCCGAATTA 59.372 43.478 0.00 0.00 0.00 1.40
2635 4358 1.271488 ACCCGTTATTGCCTTTCCGAA 60.271 47.619 0.00 0.00 0.00 4.30
2646 4369 1.153706 CCGCTCACGACCCGTTATT 60.154 57.895 0.00 0.00 43.93 1.40
2661 4384 1.600485 CATAACCCATTTACGTCCCGC 59.400 52.381 0.00 0.00 0.00 6.13
2662 4385 2.610374 CACATAACCCATTTACGTCCCG 59.390 50.000 0.00 0.00 0.00 5.14
2666 4393 2.975266 TCGCACATAACCCATTTACGT 58.025 42.857 0.00 0.00 0.00 3.57
2677 4404 0.604243 AACGGCCTGTTCGCACATAA 60.604 50.000 0.00 0.00 35.27 1.90
2681 4408 1.017177 TGATAACGGCCTGTTCGCAC 61.017 55.000 14.79 7.37 42.09 5.34
2682 4409 0.739462 CTGATAACGGCCTGTTCGCA 60.739 55.000 14.79 12.89 42.09 5.10
2690 4417 2.396590 TGGAAAGTCTGATAACGGCC 57.603 50.000 0.00 0.00 0.00 6.13
2694 4421 2.952310 GGCCCATGGAAAGTCTGATAAC 59.048 50.000 15.22 0.00 0.00 1.89
2698 4425 1.198094 TCGGCCCATGGAAAGTCTGA 61.198 55.000 15.22 4.45 0.00 3.27
2700 4427 1.299976 GTCGGCCCATGGAAAGTCT 59.700 57.895 15.22 0.00 0.00 3.24
2702 4429 1.303317 GTGTCGGCCCATGGAAAGT 60.303 57.895 15.22 0.00 0.00 2.66
2716 4443 5.813080 ACTTGGTTAAAAGTCAGTGTGTC 57.187 39.130 0.00 0.00 35.44 3.67
2731 4458 1.135228 GTTGGCACGTTTGACTTGGTT 60.135 47.619 0.00 0.00 0.00 3.67
2744 4471 6.931840 TCCATTTAGGTTAAAAATGTTGGCAC 59.068 34.615 9.24 0.00 40.93 5.01
2745 4472 6.931840 GTCCATTTAGGTTAAAAATGTTGGCA 59.068 34.615 9.24 0.00 40.93 4.92
2747 4474 7.386573 GTGGTCCATTTAGGTTAAAAATGTTGG 59.613 37.037 0.00 0.00 40.93 3.77
2750 4477 7.728532 AGAGTGGTCCATTTAGGTTAAAAATGT 59.271 33.333 0.00 0.00 40.93 2.71
2752 4479 8.585018 CAAGAGTGGTCCATTTAGGTTAAAAAT 58.415 33.333 0.00 0.00 39.02 1.82
2764 4491 1.384191 GGCCCAAGAGTGGTCCATT 59.616 57.895 0.00 0.00 43.00 3.16
2769 4496 2.036256 GCATGGCCCAAGAGTGGT 59.964 61.111 0.00 0.00 44.30 4.16
2783 4510 0.944386 GAAACTGTGACACGTGGCAT 59.056 50.000 29.80 11.49 34.33 4.40
2786 4513 2.736721 CCTATGAAACTGTGACACGTGG 59.263 50.000 21.57 3.64 0.00 4.94
2795 4522 0.246635 AGACGCGCCTATGAAACTGT 59.753 50.000 5.73 0.00 0.00 3.55
2796 4523 0.924090 GAGACGCGCCTATGAAACTG 59.076 55.000 5.73 0.00 0.00 3.16
2797 4524 0.525668 CGAGACGCGCCTATGAAACT 60.526 55.000 5.73 0.00 0.00 2.66
2800 4527 1.063649 GACGAGACGCGCCTATGAA 59.936 57.895 5.73 0.00 46.04 2.57
2824 4551 4.579340 GCATTGTGAGAGATGTCATCCATT 59.421 41.667 9.29 0.00 32.56 3.16
2847 4574 0.249238 GGATCCACGTGCTAGCTCAG 60.249 60.000 17.23 11.06 0.00 3.35
2848 4575 0.684479 AGGATCCACGTGCTAGCTCA 60.684 55.000 17.23 0.00 0.00 4.26
2855 4582 2.700773 GGCCAAAGGATCCACGTGC 61.701 63.158 15.82 10.95 0.00 5.34
2858 4585 0.457035 CATTGGCCAAAGGATCCACG 59.543 55.000 24.71 0.92 0.00 4.94
2863 4590 4.778958 TGAAAATCTCATTGGCCAAAGGAT 59.221 37.500 24.71 21.10 0.00 3.24
2869 4596 3.833650 ACATGTGAAAATCTCATTGGCCA 59.166 39.130 0.00 0.00 36.14 5.36
2871 4598 5.063180 TCACATGTGAAAATCTCATTGGC 57.937 39.130 26.02 0.00 36.14 4.52
2885 4612 5.163513 GCCAACTAGGATTTTTCACATGTG 58.836 41.667 20.18 20.18 41.22 3.21
2889 4616 3.161866 GGGCCAACTAGGATTTTTCACA 58.838 45.455 4.39 0.00 41.22 3.58
2890 4617 3.161866 TGGGCCAACTAGGATTTTTCAC 58.838 45.455 2.13 0.00 41.22 3.18
2893 4620 5.435395 AGCCTGGGCCAACTAGGATTTTT 62.435 47.826 13.40 0.00 44.94 1.94
2900 4627 0.618458 TAACAGCCTGGGCCAACTAG 59.382 55.000 8.04 5.98 43.17 2.57
2901 4628 1.211949 GATAACAGCCTGGGCCAACTA 59.788 52.381 8.04 0.00 43.17 2.24
2902 4629 0.034089 GATAACAGCCTGGGCCAACT 60.034 55.000 8.04 5.11 43.17 3.16
2903 4630 1.376609 CGATAACAGCCTGGGCCAAC 61.377 60.000 8.04 2.27 43.17 3.77
2908 4635 2.767505 GATAACCGATAACAGCCTGGG 58.232 52.381 0.00 0.00 0.00 4.45
2911 4638 2.313317 TCCGATAACCGATAACAGCCT 58.687 47.619 0.00 0.00 41.76 4.58
2913 4640 4.304110 TGAATCCGATAACCGATAACAGC 58.696 43.478 0.00 0.00 41.76 4.40
2933 4661 4.453136 GCACTAGTGTAATTTCCGGTTTGA 59.547 41.667 23.44 0.00 0.00 2.69
2945 4673 3.009033 AGCCCATTTCTGCACTAGTGTAA 59.991 43.478 23.44 12.88 0.00 2.41
2946 4674 2.571653 AGCCCATTTCTGCACTAGTGTA 59.428 45.455 23.44 18.51 0.00 2.90
2947 4675 1.352352 AGCCCATTTCTGCACTAGTGT 59.648 47.619 23.44 0.00 0.00 3.55
2948 4676 2.119801 AGCCCATTTCTGCACTAGTG 57.880 50.000 18.93 18.93 0.00 2.74
2949 4677 4.656112 ACTATAGCCCATTTCTGCACTAGT 59.344 41.667 0.00 0.00 0.00 2.57
2950 4678 4.993584 CACTATAGCCCATTTCTGCACTAG 59.006 45.833 0.00 0.00 0.00 2.57
2951 4679 4.408921 ACACTATAGCCCATTTCTGCACTA 59.591 41.667 0.00 0.00 0.00 2.74
2952 4680 3.200825 ACACTATAGCCCATTTCTGCACT 59.799 43.478 0.00 0.00 0.00 4.40
2953 4681 3.545703 ACACTATAGCCCATTTCTGCAC 58.454 45.455 0.00 0.00 0.00 4.57
2954 4682 3.931907 ACACTATAGCCCATTTCTGCA 57.068 42.857 0.00 0.00 0.00 4.41
2955 4683 3.316308 CCAACACTATAGCCCATTTCTGC 59.684 47.826 0.00 0.00 0.00 4.26
2956 4684 4.526970 ACCAACACTATAGCCCATTTCTG 58.473 43.478 0.00 0.00 0.00 3.02
2957 4685 4.862641 ACCAACACTATAGCCCATTTCT 57.137 40.909 0.00 0.00 0.00 2.52
2958 4686 4.035208 CGAACCAACACTATAGCCCATTTC 59.965 45.833 0.00 0.00 0.00 2.17
2959 4687 3.945285 CGAACCAACACTATAGCCCATTT 59.055 43.478 0.00 0.00 0.00 2.32
2960 4688 3.054655 ACGAACCAACACTATAGCCCATT 60.055 43.478 0.00 0.00 0.00 3.16
2961 4689 2.504175 ACGAACCAACACTATAGCCCAT 59.496 45.455 0.00 0.00 0.00 4.00
2962 4690 1.903860 ACGAACCAACACTATAGCCCA 59.096 47.619 0.00 0.00 0.00 5.36
2963 4691 2.093869 TCACGAACCAACACTATAGCCC 60.094 50.000 0.00 0.00 0.00 5.19
2964 4692 3.187700 CTCACGAACCAACACTATAGCC 58.812 50.000 0.00 0.00 0.00 3.93
2965 4693 3.187700 CCTCACGAACCAACACTATAGC 58.812 50.000 0.00 0.00 0.00 2.97
2966 4694 4.158025 AGACCTCACGAACCAACACTATAG 59.842 45.833 0.00 0.00 0.00 1.31
2967 4695 4.084287 AGACCTCACGAACCAACACTATA 58.916 43.478 0.00 0.00 0.00 1.31
2968 4696 2.897969 AGACCTCACGAACCAACACTAT 59.102 45.455 0.00 0.00 0.00 2.12
2969 4697 2.313317 AGACCTCACGAACCAACACTA 58.687 47.619 0.00 0.00 0.00 2.74
2970 4698 1.120530 AGACCTCACGAACCAACACT 58.879 50.000 0.00 0.00 0.00 3.55
2971 4699 1.949465 AAGACCTCACGAACCAACAC 58.051 50.000 0.00 0.00 0.00 3.32
2972 4700 2.702592 AAAGACCTCACGAACCAACA 57.297 45.000 0.00 0.00 0.00 3.33
2973 4701 4.025145 CACTAAAAGACCTCACGAACCAAC 60.025 45.833 0.00 0.00 0.00 3.77
2974 4702 4.124238 CACTAAAAGACCTCACGAACCAA 58.876 43.478 0.00 0.00 0.00 3.67
2975 4703 3.724374 CACTAAAAGACCTCACGAACCA 58.276 45.455 0.00 0.00 0.00 3.67
2976 4704 2.479275 GCACTAAAAGACCTCACGAACC 59.521 50.000 0.00 0.00 0.00 3.62
2977 4705 2.479275 GGCACTAAAAGACCTCACGAAC 59.521 50.000 0.00 0.00 0.00 3.95
2978 4706 2.762745 GGCACTAAAAGACCTCACGAA 58.237 47.619 0.00 0.00 0.00 3.85
2979 4707 1.336517 CGGCACTAAAAGACCTCACGA 60.337 52.381 0.00 0.00 0.00 4.35
2980 4708 1.068474 CGGCACTAAAAGACCTCACG 58.932 55.000 0.00 0.00 0.00 4.35
2981 4709 1.270678 ACCGGCACTAAAAGACCTCAC 60.271 52.381 0.00 0.00 0.00 3.51
2982 4710 1.053424 ACCGGCACTAAAAGACCTCA 58.947 50.000 0.00 0.00 0.00 3.86
2983 4711 2.074576 GAACCGGCACTAAAAGACCTC 58.925 52.381 0.00 0.00 0.00 3.85
2984 4712 1.271217 GGAACCGGCACTAAAAGACCT 60.271 52.381 0.00 0.00 0.00 3.85
2985 4713 1.162698 GGAACCGGCACTAAAAGACC 58.837 55.000 0.00 0.00 0.00 3.85
2986 4714 1.534163 GTGGAACCGGCACTAAAAGAC 59.466 52.381 0.00 0.00 0.00 3.01
2987 4715 1.141254 TGTGGAACCGGCACTAAAAGA 59.859 47.619 0.00 0.00 34.36 2.52
2988 4716 1.265905 GTGTGGAACCGGCACTAAAAG 59.734 52.381 0.00 0.00 34.36 2.27
2989 4717 1.310904 GTGTGGAACCGGCACTAAAA 58.689 50.000 0.00 0.00 34.36 1.52
2990 4718 0.881159 CGTGTGGAACCGGCACTAAA 60.881 55.000 0.00 0.00 34.36 1.85
2991 4719 1.301087 CGTGTGGAACCGGCACTAA 60.301 57.895 0.00 0.00 34.36 2.24
2992 4720 1.746322 TTCGTGTGGAACCGGCACTA 61.746 55.000 0.00 0.00 34.36 2.74
2993 4721 3.096633 TTCGTGTGGAACCGGCACT 62.097 57.895 0.00 0.00 34.36 4.40
2994 4722 2.589442 TTCGTGTGGAACCGGCAC 60.589 61.111 0.00 1.80 34.36 5.01
3001 4729 1.338890 TGGTCCTGGTTCGTGTGGAA 61.339 55.000 0.00 0.00 0.00 3.53
3002 4730 1.338890 TTGGTCCTGGTTCGTGTGGA 61.339 55.000 0.00 0.00 0.00 4.02
3003 4731 0.464735 TTTGGTCCTGGTTCGTGTGG 60.465 55.000 0.00 0.00 0.00 4.17
3004 4732 0.944386 CTTTGGTCCTGGTTCGTGTG 59.056 55.000 0.00 0.00 0.00 3.82
3005 4733 0.179029 CCTTTGGTCCTGGTTCGTGT 60.179 55.000 0.00 0.00 0.00 4.49
3006 4734 1.515521 GCCTTTGGTCCTGGTTCGTG 61.516 60.000 0.00 0.00 0.00 4.35
3007 4735 1.228154 GCCTTTGGTCCTGGTTCGT 60.228 57.895 0.00 0.00 0.00 3.85
3008 4736 1.971695 GGCCTTTGGTCCTGGTTCG 60.972 63.158 0.00 0.00 0.00 3.95
3009 4737 1.606601 GGGCCTTTGGTCCTGGTTC 60.607 63.158 0.84 0.00 45.53 3.62
3010 4738 2.526110 GGGCCTTTGGTCCTGGTT 59.474 61.111 0.84 0.00 45.53 3.67
3016 4744 1.228862 ACATGGTGGGCCTTTGGTC 60.229 57.895 4.53 0.00 35.27 4.02
3017 4745 1.533753 CACATGGTGGGCCTTTGGT 60.534 57.895 4.53 0.00 35.27 3.67
3018 4746 3.379880 CACATGGTGGGCCTTTGG 58.620 61.111 4.53 0.00 35.27 3.28
3027 4755 2.669229 TGCTCGTGCCACATGGTG 60.669 61.111 7.05 0.00 38.71 4.17
3028 4756 2.669569 GTGCTCGTGCCACATGGT 60.670 61.111 7.05 0.00 38.71 3.55
3029 4757 3.792047 CGTGCTCGTGCCACATGG 61.792 66.667 7.05 0.00 38.71 3.66
3030 4758 4.450122 GCGTGCTCGTGCCACATG 62.450 66.667 10.18 0.00 39.49 3.21
3056 4784 0.179054 CGGGACTAAAAGCCCCTAGC 60.179 60.000 0.00 0.00 35.48 3.42
3057 4785 0.468648 CCGGGACTAAAAGCCCCTAG 59.531 60.000 0.00 0.00 35.48 3.02
3058 4786 0.252835 ACCGGGACTAAAAGCCCCTA 60.253 55.000 6.32 0.00 35.48 3.53
3059 4787 1.138228 AACCGGGACTAAAAGCCCCT 61.138 55.000 6.32 0.00 35.48 4.79
3060 4788 0.963856 CAACCGGGACTAAAAGCCCC 60.964 60.000 6.32 0.00 41.50 5.80
3061 4789 0.963856 CCAACCGGGACTAAAAGCCC 60.964 60.000 6.32 0.00 40.01 5.19
3062 4790 0.037160 TCCAACCGGGACTAAAAGCC 59.963 55.000 6.32 0.00 42.15 4.35
3063 4791 1.450025 CTCCAACCGGGACTAAAAGC 58.550 55.000 6.32 0.00 42.15 3.51
3064 4792 1.450025 GCTCCAACCGGGACTAAAAG 58.550 55.000 6.32 0.00 42.15 2.27
3065 4793 0.037160 GGCTCCAACCGGGACTAAAA 59.963 55.000 6.32 0.00 42.15 1.52
3066 4794 1.681076 GGCTCCAACCGGGACTAAA 59.319 57.895 6.32 0.00 42.15 1.85
3067 4795 2.295602 GGGCTCCAACCGGGACTAA 61.296 63.158 6.32 0.00 42.15 2.24
3068 4796 2.686106 GGGCTCCAACCGGGACTA 60.686 66.667 6.32 0.00 42.15 2.59
3084 4812 0.618981 GTTGAACTGGGACTAGGGGG 59.381 60.000 0.00 0.00 0.00 5.40
3085 4813 1.003233 GTGTTGAACTGGGACTAGGGG 59.997 57.143 0.00 0.00 0.00 4.79
3086 4814 1.337823 CGTGTTGAACTGGGACTAGGG 60.338 57.143 0.00 0.00 0.00 3.53
3087 4815 1.616865 TCGTGTTGAACTGGGACTAGG 59.383 52.381 0.00 0.00 0.00 3.02
3088 4816 3.380479 TTCGTGTTGAACTGGGACTAG 57.620 47.619 0.00 0.00 0.00 2.57
3098 4826 2.404923 TGGTTCTGGTTCGTGTTGAA 57.595 45.000 0.00 0.00 0.00 2.69
3099 4827 2.404923 TTGGTTCTGGTTCGTGTTGA 57.595 45.000 0.00 0.00 0.00 3.18
3100 4828 2.223479 CCTTTGGTTCTGGTTCGTGTTG 60.223 50.000 0.00 0.00 0.00 3.33
3101 4829 2.021457 CCTTTGGTTCTGGTTCGTGTT 58.979 47.619 0.00 0.00 0.00 3.32
3102 4830 1.675552 CCTTTGGTTCTGGTTCGTGT 58.324 50.000 0.00 0.00 0.00 4.49
3103 4831 0.310854 GCCTTTGGTTCTGGTTCGTG 59.689 55.000 0.00 0.00 0.00 4.35
3104 4832 0.822121 GGCCTTTGGTTCTGGTTCGT 60.822 55.000 0.00 0.00 0.00 3.85
3105 4833 1.524008 GGGCCTTTGGTTCTGGTTCG 61.524 60.000 0.84 0.00 0.00 3.95
3106 4834 0.469144 TGGGCCTTTGGTTCTGGTTC 60.469 55.000 4.53 0.00 0.00 3.62
3107 4835 0.759060 GTGGGCCTTTGGTTCTGGTT 60.759 55.000 4.53 0.00 0.00 3.67
3108 4836 1.152546 GTGGGCCTTTGGTTCTGGT 60.153 57.895 4.53 0.00 0.00 4.00
3109 4837 1.153756 AGTGGGCCTTTGGTTCTGG 59.846 57.895 4.53 0.00 0.00 3.86
3110 4838 0.178992 TCAGTGGGCCTTTGGTTCTG 60.179 55.000 4.53 1.66 0.00 3.02
3111 4839 0.111253 CTCAGTGGGCCTTTGGTTCT 59.889 55.000 4.53 0.00 0.00 3.01
3112 4840 0.895559 CCTCAGTGGGCCTTTGGTTC 60.896 60.000 4.53 0.00 0.00 3.62
3113 4841 1.153756 CCTCAGTGGGCCTTTGGTT 59.846 57.895 4.53 0.00 0.00 3.67
3114 4842 2.846532 CCTCAGTGGGCCTTTGGT 59.153 61.111 4.53 0.00 0.00 3.67
3123 4851 0.326048 ATCCAGGACTCCCTCAGTGG 60.326 60.000 0.00 0.00 42.02 4.00
3124 4852 1.577736 AATCCAGGACTCCCTCAGTG 58.422 55.000 0.00 0.00 42.02 3.66
3125 4853 3.039252 CTAATCCAGGACTCCCTCAGT 57.961 52.381 0.00 0.00 42.02 3.41
3136 4864 1.122019 CGGAGACCCCCTAATCCAGG 61.122 65.000 0.00 0.00 45.07 4.45
3137 4865 1.122019 CCGGAGACCCCCTAATCCAG 61.122 65.000 0.00 0.00 0.00 3.86
3138 4866 1.074775 CCGGAGACCCCCTAATCCA 60.075 63.158 0.00 0.00 0.00 3.41
3139 4867 1.120184 GTCCGGAGACCCCCTAATCC 61.120 65.000 3.06 0.00 37.00 3.01
3140 4868 0.398098 TGTCCGGAGACCCCCTAATC 60.398 60.000 3.06 0.00 42.81 1.75
3141 4869 0.398664 CTGTCCGGAGACCCCCTAAT 60.399 60.000 3.06 0.00 42.81 1.73
3142 4870 1.001248 CTGTCCGGAGACCCCCTAA 59.999 63.158 3.06 0.00 42.81 2.69
3143 4871 2.687902 CTGTCCGGAGACCCCCTA 59.312 66.667 3.06 0.00 42.81 3.53
3164 4892 4.058817 CAGTTCGGCCAAAGGATATAGTC 58.941 47.826 2.24 0.00 0.00 2.59
3165 4893 3.454812 ACAGTTCGGCCAAAGGATATAGT 59.545 43.478 2.24 0.00 0.00 2.12
3166 4894 4.073293 ACAGTTCGGCCAAAGGATATAG 57.927 45.455 2.24 0.00 0.00 1.31
3167 4895 4.196193 CAACAGTTCGGCCAAAGGATATA 58.804 43.478 2.24 0.00 0.00 0.86
3168 4896 3.016736 CAACAGTTCGGCCAAAGGATAT 58.983 45.455 2.24 0.00 0.00 1.63
3169 4897 2.432444 CAACAGTTCGGCCAAAGGATA 58.568 47.619 2.24 0.00 0.00 2.59
3170 4898 1.247567 CAACAGTTCGGCCAAAGGAT 58.752 50.000 2.24 0.00 0.00 3.24
3171 4899 0.821711 CCAACAGTTCGGCCAAAGGA 60.822 55.000 2.24 0.00 0.00 3.36
3172 4900 0.821711 TCCAACAGTTCGGCCAAAGG 60.822 55.000 2.24 0.00 0.00 3.11
3173 4901 0.310854 GTCCAACAGTTCGGCCAAAG 59.689 55.000 2.24 0.00 0.00 2.77
3174 4902 0.106918 AGTCCAACAGTTCGGCCAAA 60.107 50.000 2.24 0.00 0.00 3.28
3175 4903 0.759959 TAGTCCAACAGTTCGGCCAA 59.240 50.000 2.24 0.00 0.00 4.52
3176 4904 0.981183 ATAGTCCAACAGTTCGGCCA 59.019 50.000 2.24 0.00 0.00 5.36
3177 4905 1.369625 CATAGTCCAACAGTTCGGCC 58.630 55.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.