Multiple sequence alignment - TraesCS5A01G341300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G341300 chr5A 100.000 4495 0 0 1 4495 547419075 547414581 0.000000e+00 8301.0
1 TraesCS5A01G341300 chr5A 96.703 91 2 1 2 92 236985710 236985621 2.800000e-32 150.0
2 TraesCS5A01G341300 chr5A 92.222 90 6 1 3 92 186235147 186235235 4.720000e-25 126.0
3 TraesCS5A01G341300 chr5A 85.849 106 7 2 1867 1964 363848714 363848609 6.150000e-19 106.0
4 TraesCS5A01G341300 chr5A 86.316 95 12 1 1867 1960 657987309 657987403 7.950000e-18 102.0
5 TraesCS5A01G341300 chr5A 92.424 66 4 1 1809 1873 295072741 295072676 4.790000e-15 93.5
6 TraesCS5A01G341300 chr5D 93.240 2559 99 21 1966 4495 432877926 432875413 0.000000e+00 3699.0
7 TraesCS5A01G341300 chr5D 83.733 375 40 12 864 1220 432878807 432878436 7.200000e-88 335.0
8 TraesCS5A01G341300 chr5D 81.928 332 28 18 1000 1321 483271655 483271346 7.460000e-63 252.0
9 TraesCS5A01G341300 chr5D 81.771 192 17 11 1637 1810 432878106 432877915 1.300000e-30 145.0
10 TraesCS5A01G341300 chr5D 86.869 99 11 2 539 636 270917170 270917267 4.750000e-20 110.0
11 TraesCS5A01G341300 chr5D 81.690 71 11 2 635 703 555072156 555072226 1.750000e-04 58.4
12 TraesCS5A01G341300 chr5B 92.325 2254 130 21 1986 4227 525816770 525814548 0.000000e+00 3164.0
13 TraesCS5A01G341300 chr5B 91.154 260 20 1 961 1220 525817701 525817445 2.570000e-92 350.0
14 TraesCS5A01G341300 chr5B 87.215 219 11 6 4277 4495 525814548 525814347 2.700000e-57 233.0
15 TraesCS5A01G341300 chr5B 84.016 244 28 7 121 360 525818830 525818594 1.630000e-54 224.0
16 TraesCS5A01G341300 chr5B 92.424 66 4 1 1809 1873 243411197 243411132 4.790000e-15 93.5
17 TraesCS5A01G341300 chr5B 100.000 31 0 0 3732 3762 542211386 542211356 1.750000e-04 58.4
18 TraesCS5A01G341300 chr7A 93.125 480 29 3 2812 3290 7728240 7727764 0.000000e+00 701.0
19 TraesCS5A01G341300 chr7A 92.435 423 25 7 3290 3711 7727732 7727316 8.320000e-167 597.0
20 TraesCS5A01G341300 chr7A 85.370 581 50 19 2114 2685 7728912 7728358 1.810000e-158 569.0
21 TraesCS5A01G341300 chr7A 80.431 511 63 18 4010 4495 7727087 7726589 5.530000e-94 355.0
22 TraesCS5A01G341300 chr7A 83.987 306 25 19 998 1296 7730566 7730278 5.730000e-69 272.0
23 TraesCS5A01G341300 chr7A 86.000 100 10 4 539 636 408058319 408058222 2.210000e-18 104.0
24 TraesCS5A01G341300 chr7A 90.411 73 6 1 1802 1873 83784826 83784898 1.330000e-15 95.3
25 TraesCS5A01G341300 chr7A 93.750 64 3 1 1811 1873 139548050 139548113 1.330000e-15 95.3
26 TraesCS5A01G341300 chr7A 92.424 66 4 1 1809 1873 206928795 206928860 4.790000e-15 93.5
27 TraesCS5A01G341300 chr7D 93.096 478 31 2 2812 3288 6769751 6769275 0.000000e+00 699.0
28 TraesCS5A01G341300 chr7D 83.972 705 67 26 2112 2808 6770464 6769798 6.340000e-178 634.0
29 TraesCS5A01G341300 chr7D 85.749 414 28 14 3291 3704 6769243 6768861 4.190000e-110 409.0
30 TraesCS5A01G341300 chr7D 82.590 471 48 17 4010 4457 6768665 6768206 7.050000e-103 385.0
31 TraesCS5A01G341300 chr7D 81.493 335 29 20 998 1321 6772449 6772137 1.250000e-60 244.0
32 TraesCS5A01G341300 chr7D 80.226 354 38 15 3862 4188 6760698 6760350 2.090000e-58 237.0
33 TraesCS5A01G341300 chr7D 87.500 104 5 2 1867 1962 567733331 567733434 3.680000e-21 113.0
34 TraesCS5A01G341300 chr7D 86.598 97 11 2 539 634 422553230 422553135 6.150000e-19 106.0
35 TraesCS5A01G341300 chr7D 82.353 119 16 5 522 636 337555015 337555132 1.030000e-16 99.0
36 TraesCS5A01G341300 chr7D 89.041 73 6 2 1802 1873 213784756 213784827 6.190000e-14 89.8
37 TraesCS5A01G341300 chr4A 83.926 703 71 24 2113 2808 733432486 733433153 6.340000e-178 634.0
38 TraesCS5A01G341300 chr4A 95.302 298 14 0 2993 3290 733433407 733433704 1.460000e-129 473.0
39 TraesCS5A01G341300 chr4A 85.986 421 46 5 3299 3718 733528391 733528799 5.340000e-119 438.0
40 TraesCS5A01G341300 chr4A 91.481 270 20 3 3442 3711 733433897 733434163 7.100000e-98 368.0
41 TraesCS5A01G341300 chr4A 81.395 473 50 16 4010 4457 733516460 733516919 7.150000e-93 351.0
42 TraesCS5A01G341300 chr4A 77.692 520 69 26 4010 4495 595385752 595386258 1.590000e-69 274.0
43 TraesCS5A01G341300 chr4A 97.080 137 4 0 998 1134 733430872 733431008 9.720000e-57 231.0
44 TraesCS5A01G341300 chr4A 79.580 333 35 21 1000 1321 698680643 698680953 1.640000e-49 207.0
45 TraesCS5A01G341300 chr4A 78.614 332 39 18 1000 1321 423962604 423962913 1.650000e-44 191.0
46 TraesCS5A01G341300 chr4A 91.852 135 8 3 3291 3425 733433737 733433868 7.680000e-43 185.0
47 TraesCS5A01G341300 chr4A 97.778 90 1 1 2 91 525041169 525041257 2.170000e-33 154.0
48 TraesCS5A01G341300 chr4A 96.703 91 3 0 2 92 521033972 521034062 7.790000e-33 152.0
49 TraesCS5A01G341300 chr4A 79.372 223 25 9 3302 3518 595385200 595385407 2.180000e-28 137.0
50 TraesCS5A01G341300 chr4A 81.871 171 15 7 1809 1963 590221407 590221237 3.650000e-26 130.0
51 TraesCS5A01G341300 chr4A 91.358 81 5 2 2812 2891 733433200 733433279 4.750000e-20 110.0
52 TraesCS5A01G341300 chr4A 92.424 66 4 1 1809 1873 475420523 475420588 4.790000e-15 93.5
53 TraesCS5A01G341300 chrUn 93.970 398 24 0 2893 3290 326457545 326457148 1.790000e-168 603.0
54 TraesCS5A01G341300 chrUn 86.936 421 27 8 3291 3711 326457115 326456723 8.870000e-122 448.0
55 TraesCS5A01G341300 chrUn 85.520 221 29 3 3491 3711 377321283 377321500 1.260000e-55 228.0
56 TraesCS5A01G341300 chrUn 89.326 178 15 3 4010 4187 318545441 318545268 2.100000e-53 220.0
57 TraesCS5A01G341300 chrUn 91.000 100 9 0 3615 3714 356164203 356164104 7.840000e-28 135.0
58 TraesCS5A01G341300 chr3D 78.040 551 63 23 3795 4308 606358393 606357864 1.220000e-75 294.0
59 TraesCS5A01G341300 chr3D 94.286 35 2 0 3763 3797 158075656 158075622 2.000000e-03 54.7
60 TraesCS5A01G341300 chr2B 83.544 237 19 10 1000 1236 561291837 561292053 2.120000e-48 204.0
61 TraesCS5A01G341300 chr2B 86.869 99 11 2 539 636 375131184 375131281 4.750000e-20 110.0
62 TraesCS5A01G341300 chr2B 92.424 66 4 1 1809 1873 660461421 660461486 4.790000e-15 93.5
63 TraesCS5A01G341300 chr3B 80.634 284 33 16 2527 2805 26287264 26287530 2.740000e-47 200.0
64 TraesCS5A01G341300 chr3B 81.548 168 13 6 1812 1962 578773038 578772872 6.110000e-24 122.0
65 TraesCS5A01G341300 chr3B 85.859 99 11 3 539 636 303926641 303926545 7.950000e-18 102.0
66 TraesCS5A01G341300 chr6B 80.899 267 21 19 1083 1321 706104432 706104696 2.760000e-42 183.0
67 TraesCS5A01G341300 chr6B 97.802 91 2 0 2 92 356665739 356665649 1.670000e-34 158.0
68 TraesCS5A01G341300 chr6B 75.585 299 50 18 244 528 39152427 39152138 4.720000e-25 126.0
69 TraesCS5A01G341300 chr6B 85.437 103 7 2 1867 1961 384819532 384819634 2.860000e-17 100.0
70 TraesCS5A01G341300 chr6B 86.957 92 4 2 1867 1950 531526026 531526117 3.700000e-16 97.1
71 TraesCS5A01G341300 chr6B 92.857 42 3 0 3756 3797 545256436 545256477 1.350000e-05 62.1
72 TraesCS5A01G341300 chr1B 80.303 264 27 15 1083 1321 127823087 127822824 4.620000e-40 176.0
73 TraesCS5A01G341300 chr1B 93.878 49 3 0 3714 3762 314566713 314566761 1.730000e-09 75.0
74 TraesCS5A01G341300 chr6D 98.901 91 0 1 2 92 183634628 183634539 1.290000e-35 161.0
75 TraesCS5A01G341300 chr6D 73.067 401 76 20 245 633 24205450 24205070 3.680000e-21 113.0
76 TraesCS5A01G341300 chr6D 93.220 59 4 0 1809 1867 109893742 109893800 2.230000e-13 87.9
77 TraesCS5A01G341300 chr7B 96.703 91 3 0 2 92 314047895 314047985 7.790000e-33 152.0
78 TraesCS5A01G341300 chr7B 86.869 99 10 3 539 636 286937797 286937893 1.710000e-19 108.0
79 TraesCS5A01G341300 chr4B 94.505 91 4 1 2 92 243461592 243461681 6.060000e-29 139.0
80 TraesCS5A01G341300 chr4B 80.357 168 17 7 1809 1960 22851763 22851930 3.680000e-21 113.0
81 TraesCS5A01G341300 chr1A 92.308 91 7 0 2 92 286774851 286774941 3.650000e-26 130.0
82 TraesCS5A01G341300 chr1A 82.645 121 13 8 521 636 165742548 165742431 2.860000e-17 100.0
83 TraesCS5A01G341300 chr4D 87.379 103 5 2 1867 1961 482703545 482703443 1.320000e-20 111.0
84 TraesCS5A01G341300 chr4D 95.122 41 1 1 3731 3770 48718595 48718635 3.750000e-06 63.9
85 TraesCS5A01G341300 chr2D 80.597 134 21 3 507 636 41428636 41428768 1.030000e-16 99.0
86 TraesCS5A01G341300 chr2D 87.234 94 2 4 1867 1960 199351161 199351078 1.030000e-16 99.0
87 TraesCS5A01G341300 chr3A 91.304 69 5 1 1806 1873 638894638 638894570 4.790000e-15 93.5
88 TraesCS5A01G341300 chr1D 83.133 83 3 7 3714 3796 434337126 434337197 1.040000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G341300 chr5A 547414581 547419075 4494 True 8301.00 8301 100.000000 1 4495 1 chr5A.!!$R4 4494
1 TraesCS5A01G341300 chr5D 432875413 432878807 3394 True 1393.00 3699 86.248000 864 4495 3 chr5D.!!$R2 3631
2 TraesCS5A01G341300 chr5B 525814347 525818830 4483 True 992.75 3164 88.677500 121 4495 4 chr5B.!!$R3 4374
3 TraesCS5A01G341300 chr7A 7726589 7730566 3977 True 498.80 701 87.069600 998 4495 5 chr7A.!!$R2 3497
4 TraesCS5A01G341300 chr7D 6768206 6772449 4243 True 474.20 699 85.380000 998 4457 5 chr7D.!!$R3 3459
5 TraesCS5A01G341300 chr4A 733430872 733434163 3291 False 333.50 634 91.833167 998 3711 6 chr4A.!!$F9 2713
6 TraesCS5A01G341300 chr4A 595385200 595386258 1058 False 205.50 274 78.532000 3302 4495 2 chr4A.!!$F8 1193
7 TraesCS5A01G341300 chrUn 326456723 326457545 822 True 525.50 603 90.453000 2893 3711 2 chrUn.!!$R3 818
8 TraesCS5A01G341300 chr3D 606357864 606358393 529 True 294.00 294 78.040000 3795 4308 1 chr3D.!!$R2 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.036010 AGCCTCCACTGATTTGACCG 60.036 55.0 0.0 0.0 0.00 4.79 F
100 101 0.106708 GATATGCTGCCTTGGTCCGA 59.893 55.0 0.0 0.0 0.00 4.55 F
1926 3572 0.034059 CGACCCATGACCTCATAGGC 59.966 60.0 0.0 0.0 38.47 3.93 F
2197 3873 0.039074 ACGAACTTGAGGAGCGTGAG 60.039 55.0 0.0 0.0 33.52 3.51 F
2997 4754 0.663153 TCAGCGATGATGACGACGAT 59.337 50.0 0.0 0.0 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1390 1828 0.037975 GCCCCAAACAACAGATGCAG 60.038 55.000 0.0 0.0 0.00 4.41 R
1998 3669 0.110056 CGTGTGAAGCCTGATGCAAC 60.110 55.000 0.0 0.0 44.83 4.17 R
2997 4754 0.038251 GTGCCTCAGTGTCATCGTCA 60.038 55.000 0.0 0.0 0.00 4.35 R
3361 5149 0.392998 ATCATCCCACCTGCGACAAC 60.393 55.000 0.0 0.0 0.00 3.32 R
4086 5982 1.351017 GAACCAGGATGTCAACCTCCA 59.649 52.381 0.0 0.0 35.35 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.726837 AGGGACAATACTACCCCTGAT 57.273 47.619 0.00 0.00 46.84 2.90
21 22 4.845530 AGGGACAATACTACCCCTGATA 57.154 45.455 0.00 0.00 46.84 2.15
22 23 5.370623 AGGGACAATACTACCCCTGATAT 57.629 43.478 0.00 0.00 46.84 1.63
23 24 5.738401 AGGGACAATACTACCCCTGATATT 58.262 41.667 0.00 0.00 46.84 1.28
24 25 6.882155 AGGGACAATACTACCCCTGATATTA 58.118 40.000 0.00 0.00 46.84 0.98
25 26 6.960542 AGGGACAATACTACCCCTGATATTAG 59.039 42.308 0.00 0.00 46.84 1.73
26 27 6.729569 GGGACAATACTACCCCTGATATTAGT 59.270 42.308 0.00 0.00 37.85 2.24
27 28 7.237055 GGGACAATACTACCCCTGATATTAGTT 59.763 40.741 0.00 0.00 37.85 2.24
28 29 8.657712 GGACAATACTACCCCTGATATTAGTTT 58.342 37.037 0.00 0.00 0.00 2.66
31 32 9.654663 CAATACTACCCCTGATATTAGTTTAGC 57.345 37.037 0.00 0.00 0.00 3.09
32 33 8.967779 ATACTACCCCTGATATTAGTTTAGCA 57.032 34.615 0.00 0.00 0.00 3.49
33 34 7.873699 ACTACCCCTGATATTAGTTTAGCAT 57.126 36.000 0.00 0.00 0.00 3.79
34 35 8.276453 ACTACCCCTGATATTAGTTTAGCATT 57.724 34.615 0.00 0.00 0.00 3.56
35 36 9.388672 ACTACCCCTGATATTAGTTTAGCATTA 57.611 33.333 0.00 0.00 0.00 1.90
36 37 9.877178 CTACCCCTGATATTAGTTTAGCATTAG 57.123 37.037 0.00 0.00 0.00 1.73
37 38 8.506196 ACCCCTGATATTAGTTTAGCATTAGA 57.494 34.615 0.00 0.00 0.00 2.10
38 39 8.945193 ACCCCTGATATTAGTTTAGCATTAGAA 58.055 33.333 0.00 0.00 0.00 2.10
39 40 9.793259 CCCCTGATATTAGTTTAGCATTAGAAA 57.207 33.333 0.00 0.00 0.00 2.52
50 51 8.893727 AGTTTAGCATTAGAAATCAATTAGCGT 58.106 29.630 0.00 0.00 0.00 5.07
51 52 8.947940 GTTTAGCATTAGAAATCAATTAGCGTG 58.052 33.333 0.00 0.00 0.00 5.34
52 53 6.925610 AGCATTAGAAATCAATTAGCGTGA 57.074 33.333 0.00 0.00 0.00 4.35
53 54 6.952743 AGCATTAGAAATCAATTAGCGTGAG 58.047 36.000 0.00 0.00 0.00 3.51
66 67 3.540211 CGTGAGCCTCCACTGATTT 57.460 52.632 0.00 0.00 35.02 2.17
67 68 1.081892 CGTGAGCCTCCACTGATTTG 58.918 55.000 0.00 0.00 35.02 2.32
68 69 1.338105 CGTGAGCCTCCACTGATTTGA 60.338 52.381 0.00 0.00 35.02 2.69
69 70 2.079925 GTGAGCCTCCACTGATTTGAC 58.920 52.381 0.00 0.00 34.38 3.18
70 71 1.003580 TGAGCCTCCACTGATTTGACC 59.996 52.381 0.00 0.00 0.00 4.02
71 72 0.036010 AGCCTCCACTGATTTGACCG 60.036 55.000 0.00 0.00 0.00 4.79
72 73 1.648467 GCCTCCACTGATTTGACCGC 61.648 60.000 0.00 0.00 0.00 5.68
73 74 1.026718 CCTCCACTGATTTGACCGCC 61.027 60.000 0.00 0.00 0.00 6.13
74 75 1.361668 CTCCACTGATTTGACCGCCG 61.362 60.000 0.00 0.00 0.00 6.46
75 76 2.480555 CACTGATTTGACCGCCGC 59.519 61.111 0.00 0.00 0.00 6.53
76 77 2.031919 ACTGATTTGACCGCCGCA 59.968 55.556 0.00 0.00 0.00 5.69
77 78 1.377202 ACTGATTTGACCGCCGCAT 60.377 52.632 0.00 0.00 0.00 4.73
78 79 1.063006 CTGATTTGACCGCCGCATG 59.937 57.895 0.00 0.00 0.00 4.06
79 80 2.278142 GATTTGACCGCCGCATGC 60.278 61.111 7.91 7.91 0.00 4.06
80 81 3.050166 GATTTGACCGCCGCATGCA 62.050 57.895 19.57 0.00 41.33 3.96
81 82 2.924922 GATTTGACCGCCGCATGCAG 62.925 60.000 19.57 7.69 41.33 4.41
82 83 4.695993 TTGACCGCCGCATGCAGA 62.696 61.111 19.57 0.00 41.33 4.26
83 84 3.974835 TTGACCGCCGCATGCAGAT 62.975 57.895 19.57 0.00 41.33 2.90
84 85 2.280119 GACCGCCGCATGCAGATA 60.280 61.111 19.57 0.00 41.33 1.98
85 86 1.669115 GACCGCCGCATGCAGATAT 60.669 57.895 19.57 0.00 41.33 1.63
86 87 1.904852 GACCGCCGCATGCAGATATG 61.905 60.000 19.57 0.00 41.33 1.78
98 99 1.602311 CAGATATGCTGCCTTGGTCC 58.398 55.000 0.00 0.00 37.90 4.46
99 100 0.107456 AGATATGCTGCCTTGGTCCG 59.893 55.000 0.00 0.00 0.00 4.79
100 101 0.106708 GATATGCTGCCTTGGTCCGA 59.893 55.000 0.00 0.00 0.00 4.55
101 102 0.179045 ATATGCTGCCTTGGTCCGAC 60.179 55.000 0.00 0.00 0.00 4.79
102 103 1.549243 TATGCTGCCTTGGTCCGACA 61.549 55.000 0.00 0.00 0.00 4.35
103 104 2.045926 GCTGCCTTGGTCCGACAT 60.046 61.111 0.00 0.00 0.00 3.06
104 105 1.220749 GCTGCCTTGGTCCGACATA 59.779 57.895 0.00 0.00 0.00 2.29
105 106 0.392461 GCTGCCTTGGTCCGACATAA 60.392 55.000 0.00 0.00 0.00 1.90
106 107 1.948611 GCTGCCTTGGTCCGACATAAA 60.949 52.381 0.00 0.00 0.00 1.40
107 108 2.009774 CTGCCTTGGTCCGACATAAAG 58.990 52.381 0.00 1.46 0.00 1.85
108 109 1.339631 TGCCTTGGTCCGACATAAAGG 60.340 52.381 16.87 16.87 40.35 3.11
109 110 1.065709 GCCTTGGTCCGACATAAAGGA 60.066 52.381 22.05 0.00 39.88 3.36
110 111 2.617021 GCCTTGGTCCGACATAAAGGAA 60.617 50.000 22.05 0.00 39.88 3.36
111 112 3.007635 CCTTGGTCCGACATAAAGGAAC 58.992 50.000 16.46 0.00 44.27 3.62
112 113 2.373540 TGGTCCGACATAAAGGAACG 57.626 50.000 0.00 0.00 46.87 3.95
113 114 1.066716 TGGTCCGACATAAAGGAACGG 60.067 52.381 0.00 0.00 46.87 4.44
114 115 3.408851 TGGTCCGACATAAAGGAACGGA 61.409 50.000 0.00 0.00 46.87 4.69
116 117 3.173668 TCCGACATAAAGGAACGGATG 57.826 47.619 0.00 0.00 45.87 3.51
117 118 2.159014 TCCGACATAAAGGAACGGATGG 60.159 50.000 0.00 0.00 45.87 3.51
118 119 2.159014 CCGACATAAAGGAACGGATGGA 60.159 50.000 0.00 0.00 45.31 3.41
119 120 3.123804 CGACATAAAGGAACGGATGGAG 58.876 50.000 0.00 0.00 0.00 3.86
120 121 3.430374 CGACATAAAGGAACGGATGGAGT 60.430 47.826 0.00 0.00 0.00 3.85
121 122 4.202080 CGACATAAAGGAACGGATGGAGTA 60.202 45.833 0.00 0.00 0.00 2.59
122 123 5.667466 GACATAAAGGAACGGATGGAGTAA 58.333 41.667 0.00 0.00 0.00 2.24
123 124 6.248569 ACATAAAGGAACGGATGGAGTAAT 57.751 37.500 0.00 0.00 0.00 1.89
124 125 7.369551 ACATAAAGGAACGGATGGAGTAATA 57.630 36.000 0.00 0.00 0.00 0.98
420 660 4.722279 AGTTCCCCCAAAAATGGTTTTACA 59.278 37.500 0.00 0.00 35.12 2.41
424 664 7.010339 TCCCCCAAAAATGGTTTTACATAAG 57.990 36.000 0.00 0.00 35.12 1.73
474 715 9.705290 ATAATTTCCAACTTTTTATTGAAGCGT 57.295 25.926 0.00 0.00 0.00 5.07
477 718 6.137794 TCCAACTTTTTATTGAAGCGTTCA 57.862 33.333 0.00 0.00 38.04 3.18
478 719 6.205784 TCCAACTTTTTATTGAAGCGTTCAG 58.794 36.000 1.72 0.00 41.38 3.02
588 829 7.837689 GGGAAAGTACTTTTATTACCCCTCATT 59.162 37.037 23.77 0.32 30.67 2.57
626 867 7.898014 AACTCCAAAAGTTTCAAATCCTAGT 57.102 32.000 0.00 0.00 46.26 2.57
632 873 9.546428 CCAAAAGTTTCAAATCCTAGTCAAAAT 57.454 29.630 0.00 0.00 0.00 1.82
643 884 9.503399 AAATCCTAGTCAAAATTTAGTCGTCTT 57.497 29.630 0.00 0.00 0.00 3.01
644 885 9.503399 AATCCTAGTCAAAATTTAGTCGTCTTT 57.497 29.630 0.00 0.00 0.00 2.52
683 924 9.185192 GACCTGAATGAAATTTTGTTACTTCTG 57.815 33.333 0.00 0.00 36.07 3.02
710 956 4.439305 TTTGTACTGCCATGCAAAGATC 57.561 40.909 0.00 0.00 38.41 2.75
802 1048 9.672086 TTTGTTGAGACAATTATCCGTTTTAAG 57.328 29.630 0.00 0.00 44.71 1.85
805 1051 5.355910 TGAGACAATTATCCGTTTTAAGGGC 59.644 40.000 0.00 0.00 34.04 5.19
806 1052 5.506708 AGACAATTATCCGTTTTAAGGGCT 58.493 37.500 0.00 0.00 34.04 5.19
815 1061 2.227149 CGTTTTAAGGGCTGGTGGTAAC 59.773 50.000 0.00 0.00 0.00 2.50
827 1073 4.564821 GCTGGTGGTAACTAATGAAGACCA 60.565 45.833 0.00 0.00 37.85 4.02
839 1085 2.185310 GAAGACCATGAGGCCACCGT 62.185 60.000 5.01 0.00 39.06 4.83
892 1153 2.304056 CCACATCCTGGTCTGGCCT 61.304 63.158 3.32 0.00 38.35 5.19
906 1202 3.680786 GCCTGGCCCGGTCAAAAC 61.681 66.667 15.45 0.00 0.00 2.43
921 1224 6.691388 CCGGTCAAAACAAACAAAAACAAAAA 59.309 30.769 0.00 0.00 0.00 1.94
958 1261 1.694150 CCTCTCCGCAATAATCCTCCA 59.306 52.381 0.00 0.00 0.00 3.86
959 1262 2.104792 CCTCTCCGCAATAATCCTCCAA 59.895 50.000 0.00 0.00 0.00 3.53
969 1290 5.413499 CAATAATCCTCCAAACCAAAGCAG 58.587 41.667 0.00 0.00 0.00 4.24
982 1303 0.597072 AAAGCAGAGCAGAGCAAAGC 59.403 50.000 0.00 0.00 0.00 3.51
993 1314 2.679996 GCAAAGCAATCCCCCGGT 60.680 61.111 0.00 0.00 0.00 5.28
1180 1501 4.344474 CCTACCCGCGCTCCGATC 62.344 72.222 5.56 0.00 40.02 3.69
1196 1517 1.004918 ATCCCGATTCCGATTCCGC 60.005 57.895 0.00 0.00 38.22 5.54
1227 1560 3.262686 GTTCGAATCGCCCGCCTC 61.263 66.667 0.00 0.00 0.00 4.70
1231 1564 4.208686 GAATCGCCCGCCTCGTCT 62.209 66.667 0.00 0.00 0.00 4.18
1269 1641 3.131478 CGTCGTTGGGATTGGGGC 61.131 66.667 0.00 0.00 0.00 5.80
1300 1676 2.806237 CTAGGGTTCGTCGGCCTC 59.194 66.667 0.00 0.00 0.00 4.70
1310 1686 3.838271 TCGGCCTCGGAGACATGC 61.838 66.667 6.58 0.75 36.95 4.06
1311 1687 3.842923 CGGCCTCGGAGACATGCT 61.843 66.667 6.58 0.00 0.00 3.79
1326 1728 0.758310 ATGCTCTCCAGATCTCCGCA 60.758 55.000 0.00 0.00 0.00 5.69
1346 1749 2.230940 CGTAGGATTGCTGGCGACG 61.231 63.158 0.00 0.00 0.00 5.12
1348 1751 1.141019 TAGGATTGCTGGCGACGTC 59.859 57.895 5.18 5.18 0.00 4.34
1366 1804 0.169672 TCGCTAGCAACCTCGTGTAC 59.830 55.000 16.45 0.00 0.00 2.90
1372 1810 1.736645 CAACCTCGTGTACCGCCAG 60.737 63.158 0.00 0.00 36.19 4.85
1375 1813 4.111016 CTCGTGTACCGCCAGCGA 62.111 66.667 14.67 0.00 42.83 4.93
1376 1814 3.411418 CTCGTGTACCGCCAGCGAT 62.411 63.158 14.67 0.00 42.83 4.58
1377 1815 3.254654 CGTGTACCGCCAGCGATG 61.255 66.667 14.67 0.00 42.83 3.84
1390 1828 1.391485 CAGCGATGTGTGTAGTGCTTC 59.609 52.381 0.00 0.00 0.00 3.86
1411 1849 1.187567 GCATCTGTTGTTTGGGGCCT 61.188 55.000 0.84 0.00 0.00 5.19
1416 1854 1.693606 CTGTTGTTTGGGGCCTGAATT 59.306 47.619 0.84 0.00 0.00 2.17
1469 1919 3.977244 GCACCACCTGCCGTTTGG 61.977 66.667 0.00 0.00 40.42 3.28
1476 1926 0.973496 ACCTGCCGTTTGGTTTGGTT 60.973 50.000 0.00 0.00 37.67 3.67
1477 1927 0.176910 CCTGCCGTTTGGTTTGGTTT 59.823 50.000 0.00 0.00 37.67 3.27
1478 1928 1.285578 CTGCCGTTTGGTTTGGTTTG 58.714 50.000 0.00 0.00 37.67 2.93
1479 1929 0.108138 TGCCGTTTGGTTTGGTTTGG 60.108 50.000 0.00 0.00 37.67 3.28
1489 2857 3.195825 TGGTTTGGTTTGGTTGGTGTTAG 59.804 43.478 0.00 0.00 0.00 2.34
1494 2862 1.958579 GTTTGGTTGGTGTTAGGGGTC 59.041 52.381 0.00 0.00 0.00 4.46
1495 2863 1.223501 TTGGTTGGTGTTAGGGGTCA 58.776 50.000 0.00 0.00 0.00 4.02
1531 2899 2.614134 TCCAACCCAATAAACCCAGG 57.386 50.000 0.00 0.00 0.00 4.45
1532 2900 1.790157 TCCAACCCAATAAACCCAGGT 59.210 47.619 0.00 0.00 0.00 4.00
1534 2902 3.010808 TCCAACCCAATAAACCCAGGTAG 59.989 47.826 0.00 0.00 0.00 3.18
1559 2930 1.008538 CCTGTTTGCTGCAACGACC 60.009 57.895 15.72 4.23 0.00 4.79
1560 2931 1.369209 CTGTTTGCTGCAACGACCG 60.369 57.895 15.72 4.46 0.00 4.79
1562 2933 1.368850 GTTTGCTGCAACGACCGAC 60.369 57.895 15.72 5.71 0.00 4.79
1563 2934 1.815840 TTTGCTGCAACGACCGACA 60.816 52.632 15.72 0.00 0.00 4.35
1564 2935 2.042520 TTTGCTGCAACGACCGACAC 62.043 55.000 15.72 0.00 0.00 3.67
1566 2937 2.530497 GCTGCAACGACCGACACAA 61.530 57.895 0.00 0.00 0.00 3.33
1568 2939 0.586319 CTGCAACGACCGACACAATT 59.414 50.000 0.00 0.00 0.00 2.32
1569 2940 1.795872 CTGCAACGACCGACACAATTA 59.204 47.619 0.00 0.00 0.00 1.40
1570 2941 1.795872 TGCAACGACCGACACAATTAG 59.204 47.619 0.00 0.00 0.00 1.73
1572 2943 2.222445 GCAACGACCGACACAATTAGTT 59.778 45.455 0.00 0.00 0.00 2.24
1573 2944 3.429543 GCAACGACCGACACAATTAGTTA 59.570 43.478 0.00 0.00 0.00 2.24
1574 2945 4.664891 GCAACGACCGACACAATTAGTTAC 60.665 45.833 0.00 0.00 0.00 2.50
1608 3091 8.537223 GTCAACCAACATATATGTAGTAACGTG 58.463 37.037 18.56 10.90 40.80 4.49
1618 3101 2.159037 TGTAGTAACGTGAGCGAGTCTG 59.841 50.000 0.00 0.00 42.00 3.51
1629 3113 0.161024 GCGAGTCTGTTTACGTGCAC 59.839 55.000 6.82 6.82 0.00 4.57
1663 3151 5.344207 AGTCGAACAAAATGTAGCTGTTC 57.656 39.130 0.00 0.00 43.51 3.18
1666 3154 3.884169 GAACAAAATGTAGCTGTTCGCA 58.116 40.909 0.00 0.00 39.51 5.10
1676 3169 1.470098 AGCTGTTCGCAATGTTCATCC 59.530 47.619 0.00 0.00 42.61 3.51
1683 3176 5.293324 TGTTCGCAATGTTCATCCTACATAC 59.707 40.000 0.00 0.00 35.26 2.39
1707 3269 5.438761 ACAAACACCTATTTTGTCTGCTC 57.561 39.130 0.00 0.00 42.26 4.26
1709 3271 2.699954 ACACCTATTTTGTCTGCTCCG 58.300 47.619 0.00 0.00 0.00 4.63
1737 3310 2.432146 TCCATCAAGAGAGTGAATCCGG 59.568 50.000 0.00 0.00 0.00 5.14
1774 3347 8.557592 TTATCATGCTTCATATGTTCCTCATC 57.442 34.615 1.90 0.00 37.91 2.92
1781 3354 1.874129 TATGTTCCTCATCGTGGGGT 58.126 50.000 4.19 0.00 39.64 4.95
1782 3355 1.874129 ATGTTCCTCATCGTGGGGTA 58.126 50.000 4.19 0.00 39.64 3.69
1818 3464 6.530019 AACCATAATCAGTAAAAAGGGCAG 57.470 37.500 0.00 0.00 0.00 4.85
1841 3487 3.691342 TGCACGTAGCTCCCGCTT 61.691 61.111 10.54 0.00 46.47 4.68
1842 3488 3.188786 GCACGTAGCTCCCGCTTG 61.189 66.667 5.69 0.00 46.47 4.01
1843 3489 3.188786 CACGTAGCTCCCGCTTGC 61.189 66.667 5.69 0.00 46.47 4.01
1844 3490 4.796231 ACGTAGCTCCCGCTTGCG 62.796 66.667 8.14 8.14 46.47 4.85
1847 3493 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1854 3500 3.499737 CGCTTGCGCAGGGTTAGG 61.500 66.667 21.88 1.25 35.30 2.69
1856 3502 2.438434 CTTGCGCAGGGTTAGGGG 60.438 66.667 12.39 0.00 0.00 4.79
1857 3503 2.931105 TTGCGCAGGGTTAGGGGA 60.931 61.111 11.31 0.00 0.00 4.81
1859 3505 2.124695 GCGCAGGGTTAGGGGAAG 60.125 66.667 0.30 0.00 0.00 3.46
1860 3506 2.590092 CGCAGGGTTAGGGGAAGG 59.410 66.667 0.00 0.00 0.00 3.46
1861 3507 1.993391 CGCAGGGTTAGGGGAAGGA 60.993 63.158 0.00 0.00 0.00 3.36
1862 3508 1.345715 CGCAGGGTTAGGGGAAGGAT 61.346 60.000 0.00 0.00 0.00 3.24
1863 3509 0.474614 GCAGGGTTAGGGGAAGGATC 59.525 60.000 0.00 0.00 0.00 3.36
1864 3510 1.141185 CAGGGTTAGGGGAAGGATCC 58.859 60.000 2.48 2.48 45.77 3.36
1873 3519 3.388272 GGAAGGATCCGAGCCTTTC 57.612 57.895 18.84 13.58 45.43 2.62
1874 3520 0.179043 GGAAGGATCCGAGCCTTTCC 60.179 60.000 18.84 16.18 45.43 3.13
1875 3521 0.833949 GAAGGATCCGAGCCTTTCCT 59.166 55.000 18.84 0.38 45.43 3.36
1876 3522 1.290134 AAGGATCCGAGCCTTTCCTT 58.710 50.000 12.33 3.36 42.99 3.36
1877 3523 0.543749 AGGATCCGAGCCTTTCCTTG 59.456 55.000 5.98 0.00 34.98 3.61
1878 3524 1.098129 GGATCCGAGCCTTTCCTTGC 61.098 60.000 0.00 0.00 0.00 4.01
1880 3526 2.185310 ATCCGAGCCTTTCCTTGCGT 62.185 55.000 0.00 0.00 0.00 5.24
1881 3527 1.966451 CCGAGCCTTTCCTTGCGTT 60.966 57.895 0.00 0.00 0.00 4.84
1882 3528 1.515521 CCGAGCCTTTCCTTGCGTTT 61.516 55.000 0.00 0.00 0.00 3.60
1883 3529 0.110192 CGAGCCTTTCCTTGCGTTTC 60.110 55.000 0.00 0.00 0.00 2.78
1884 3530 1.239347 GAGCCTTTCCTTGCGTTTCT 58.761 50.000 0.00 0.00 0.00 2.52
1885 3531 0.954452 AGCCTTTCCTTGCGTTTCTG 59.046 50.000 0.00 0.00 0.00 3.02
1886 3532 0.664466 GCCTTTCCTTGCGTTTCTGC 60.664 55.000 0.00 0.00 0.00 4.26
1901 3547 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
1902 3548 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
1903 3549 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
1905 3551 1.615384 GCAAGAGGCTGTTTCCAGGAT 60.615 52.381 0.00 0.00 39.22 3.24
1906 3552 2.800250 CAAGAGGCTGTTTCCAGGATT 58.200 47.619 0.00 0.00 39.22 3.01
1907 3553 2.751806 CAAGAGGCTGTTTCCAGGATTC 59.248 50.000 0.00 0.00 39.22 2.52
1908 3554 1.065854 AGAGGCTGTTTCCAGGATTCG 60.066 52.381 0.00 0.00 39.22 3.34
1909 3555 0.984230 AGGCTGTTTCCAGGATTCGA 59.016 50.000 0.00 0.00 39.22 3.71
1911 3557 1.087501 GCTGTTTCCAGGATTCGACC 58.912 55.000 0.00 0.00 39.22 4.79
1914 3560 1.633432 TGTTTCCAGGATTCGACCCAT 59.367 47.619 5.89 0.00 0.00 4.00
1915 3561 2.017049 GTTTCCAGGATTCGACCCATG 58.983 52.381 5.89 0.00 0.00 3.66
1916 3562 1.578897 TTCCAGGATTCGACCCATGA 58.421 50.000 0.00 0.00 0.00 3.07
1917 3563 0.830648 TCCAGGATTCGACCCATGAC 59.169 55.000 0.00 0.00 0.00 3.06
1918 3564 0.179045 CCAGGATTCGACCCATGACC 60.179 60.000 0.00 0.00 0.00 4.02
1919 3565 0.833287 CAGGATTCGACCCATGACCT 59.167 55.000 0.00 0.00 0.00 3.85
1920 3566 1.123928 AGGATTCGACCCATGACCTC 58.876 55.000 0.00 0.00 0.00 3.85
1923 3569 2.632996 GGATTCGACCCATGACCTCATA 59.367 50.000 0.00 0.00 34.26 2.15
1924 3570 3.306364 GGATTCGACCCATGACCTCATAG 60.306 52.174 0.00 0.00 34.26 2.23
1925 3571 1.704641 TCGACCCATGACCTCATAGG 58.295 55.000 0.00 0.00 40.34 2.57
1926 3572 0.034059 CGACCCATGACCTCATAGGC 59.966 60.000 0.00 0.00 38.47 3.93
1927 3573 1.131638 GACCCATGACCTCATAGGCA 58.868 55.000 0.00 0.00 38.47 4.75
1931 3577 2.569059 CCATGACCTCATAGGCAACAG 58.431 52.381 0.00 0.00 39.63 3.16
1932 3578 1.945394 CATGACCTCATAGGCAACAGC 59.055 52.381 0.00 0.00 39.63 4.40
1933 3579 1.279496 TGACCTCATAGGCAACAGCT 58.721 50.000 0.00 0.00 39.63 4.24
1934 3580 1.630369 TGACCTCATAGGCAACAGCTT 59.370 47.619 0.00 0.00 39.63 3.74
1935 3581 2.040278 TGACCTCATAGGCAACAGCTTT 59.960 45.455 0.00 0.00 39.63 3.51
1936 3582 3.263170 TGACCTCATAGGCAACAGCTTTA 59.737 43.478 0.00 0.00 39.63 1.85
1937 3583 3.610911 ACCTCATAGGCAACAGCTTTAC 58.389 45.455 0.00 0.00 39.63 2.01
1938 3584 2.945668 CCTCATAGGCAACAGCTTTACC 59.054 50.000 0.00 0.00 41.41 2.85
1939 3585 2.609459 CTCATAGGCAACAGCTTTACCG 59.391 50.000 0.00 0.00 41.41 4.02
1940 3586 1.064060 CATAGGCAACAGCTTTACCGC 59.936 52.381 0.00 0.00 41.41 5.68
1941 3587 0.323629 TAGGCAACAGCTTTACCGCT 59.676 50.000 0.00 0.00 41.90 5.52
1949 3595 2.480555 CTTTACCGCTGCGCCAAG 59.519 61.111 18.00 13.33 0.00 3.61
1950 3596 3.039202 CTTTACCGCTGCGCCAAGG 62.039 63.158 18.00 7.86 0.00 3.61
1969 3640 3.049344 AGGCTCCCCTTCTTAACCATAG 58.951 50.000 0.00 0.00 38.74 2.23
1976 3647 6.266080 TCCCCTTCTTAACCATAGTCAGTAA 58.734 40.000 0.00 0.00 0.00 2.24
1977 3648 6.155737 TCCCCTTCTTAACCATAGTCAGTAAC 59.844 42.308 0.00 0.00 0.00 2.50
1993 3664 5.919141 GTCAGTAACTAACACTATATGGCCG 59.081 44.000 0.00 0.00 0.00 6.13
1998 3669 4.945246 ACTAACACTATATGGCCGAACTG 58.055 43.478 0.00 0.00 0.00 3.16
2057 3732 2.951787 GCCCCTGTCAACCATGAATGAT 60.952 50.000 0.00 0.00 37.30 2.45
2110 3786 8.610248 TCTTACTATCTTCCTCTCAATACTCG 57.390 38.462 0.00 0.00 0.00 4.18
2115 3791 0.759436 TCCTCTCAATACTCGCCCCC 60.759 60.000 0.00 0.00 0.00 5.40
2116 3792 0.760945 CCTCTCAATACTCGCCCCCT 60.761 60.000 0.00 0.00 0.00 4.79
2120 3796 0.830648 TCAATACTCGCCCCCTCTTG 59.169 55.000 0.00 0.00 0.00 3.02
2137 3813 1.000938 CTTGTGTGCAGAAAAGAGGGC 60.001 52.381 8.06 0.00 0.00 5.19
2197 3873 0.039074 ACGAACTTGAGGAGCGTGAG 60.039 55.000 0.00 0.00 33.52 3.51
2256 3933 2.815357 AATACCTCTGGGCCCATCTA 57.185 50.000 28.82 13.41 35.63 1.98
2266 3943 2.024080 TGGGCCCATCTATGCTTTCTTT 60.024 45.455 24.45 0.00 0.00 2.52
2345 4024 3.247648 CGTTGTTTCCTTGTACCTGTGAG 59.752 47.826 0.00 0.00 0.00 3.51
2347 4026 4.067972 TGTTTCCTTGTACCTGTGAGTC 57.932 45.455 0.00 0.00 0.00 3.36
2348 4027 3.452990 TGTTTCCTTGTACCTGTGAGTCA 59.547 43.478 0.00 0.00 0.00 3.41
2395 4074 2.121538 CGCAGATGAGAGGGACCGA 61.122 63.158 0.00 0.00 0.00 4.69
2432 4111 3.054802 CCTGCTCTTAGAAGGTTGGTGAT 60.055 47.826 0.00 0.00 36.20 3.06
2462 4141 9.730420 CTTAAAGCTTTAGCAAAGTCTGTTTAA 57.270 29.630 17.91 0.08 45.16 1.52
2467 4146 7.649306 AGCTTTAGCAAAGTCTGTTTAATGTTG 59.351 33.333 4.33 0.00 45.16 3.33
2468 4147 7.435192 GCTTTAGCAAAGTCTGTTTAATGTTGT 59.565 33.333 9.40 0.00 40.64 3.32
2470 4149 9.646427 TTTAGCAAAGTCTGTTTAATGTTGTTT 57.354 25.926 0.00 0.00 0.00 2.83
2616 4296 5.954296 AAAGTGATGATGAAAGGTCTGTG 57.046 39.130 0.00 0.00 0.00 3.66
2681 4367 3.388024 TGACCAGACTCTACTTGCTGTTT 59.612 43.478 0.00 0.00 0.00 2.83
2747 4434 8.530311 TGCATGAATAAATTGTATTGTGGACTT 58.470 29.630 0.00 0.00 0.00 3.01
2875 4606 4.660789 AGAATAATGCAGCAATTGTCCC 57.339 40.909 7.40 0.00 0.00 4.46
2991 4723 7.243487 TGAAACTTTTATTCAGCGATGATGAC 58.757 34.615 3.25 0.00 33.15 3.06
2997 4754 0.663153 TCAGCGATGATGACGACGAT 59.337 50.000 0.00 0.00 0.00 3.73
3089 4846 8.370321 GTTTAGAAAGGTTTGTTGTTTTCTTCG 58.630 33.333 3.96 0.00 39.71 3.79
3300 5088 1.607178 TGATGCCTTGGTGCCCTTG 60.607 57.895 0.00 0.00 0.00 3.61
3361 5149 8.613060 AGCTTAATCCTGTTCATATATGTGTG 57.387 34.615 12.42 2.57 0.00 3.82
3524 5334 6.127897 GCTTTATGCTTTATGTTGTCTGGACT 60.128 38.462 2.38 0.00 38.95 3.85
3746 5556 3.813166 CCGTCCCATATTAATTGTCGCTT 59.187 43.478 0.00 0.00 0.00 4.68
3760 5570 7.849804 AATTGTCGCTTAAACAGATGTATCT 57.150 32.000 0.00 0.00 37.72 1.98
3773 5583 8.939201 AACAGATGTATCTATTTCAGTGACAG 57.061 34.615 0.00 0.00 34.85 3.51
3891 5704 2.608752 CCAGCAGTGTCTTGGAAAATGC 60.609 50.000 2.43 2.43 0.00 3.56
3896 5709 4.860907 GCAGTGTCTTGGAAAATGCTTATG 59.139 41.667 3.34 0.00 0.00 1.90
3915 5750 9.709495 TGCTTATGTTTTTAGCTGAATTCATTT 57.291 25.926 8.96 2.91 35.93 2.32
3939 5774 5.111293 AGTGCTTGAAACACCAATTTTCTG 58.889 37.500 0.00 0.00 38.87 3.02
3986 5822 7.315142 TGATTTTAACTGAATTAGCAGCCAAG 58.685 34.615 0.00 0.00 39.51 3.61
4086 5982 2.902705 TTGGAGTCGTTGTACTGCTT 57.097 45.000 0.00 0.00 38.53 3.91
4091 5987 1.000955 AGTCGTTGTACTGCTTGGAGG 59.999 52.381 0.00 0.00 0.00 4.30
4232 6133 4.878397 GGTTGCATCTGCTGTATTCTTACT 59.122 41.667 3.53 0.00 42.66 2.24
4236 6137 6.845302 TGCATCTGCTGTATTCTTACTTTTG 58.155 36.000 3.53 0.00 42.66 2.44
4275 6189 5.941733 TGATTTTGTCGATTGATGTTGAGG 58.058 37.500 0.00 0.00 0.00 3.86
4293 6207 6.488344 TGTTGAGGTAATGTTGCTTGTTATCA 59.512 34.615 0.00 0.00 0.00 2.15
4315 6229 7.994425 TCAAATTCAAATGAAGTAGGTAGCA 57.006 32.000 1.98 0.00 37.48 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.729569 ACTAATATCAGGGGTAGTATTGTCCC 59.270 42.308 0.00 0.00 40.41 4.46
2 3 7.793948 ACTAATATCAGGGGTAGTATTGTCC 57.206 40.000 0.00 0.00 0.00 4.02
5 6 9.654663 GCTAAACTAATATCAGGGGTAGTATTG 57.345 37.037 0.00 0.00 0.00 1.90
6 7 9.388672 TGCTAAACTAATATCAGGGGTAGTATT 57.611 33.333 0.00 0.00 0.00 1.89
7 8 8.967779 TGCTAAACTAATATCAGGGGTAGTAT 57.032 34.615 0.00 0.00 0.00 2.12
8 9 8.967779 ATGCTAAACTAATATCAGGGGTAGTA 57.032 34.615 0.00 0.00 0.00 1.82
9 10 7.873699 ATGCTAAACTAATATCAGGGGTAGT 57.126 36.000 0.00 0.00 0.00 2.73
10 11 9.877178 CTAATGCTAAACTAATATCAGGGGTAG 57.123 37.037 0.00 0.00 0.00 3.18
11 12 9.610104 TCTAATGCTAAACTAATATCAGGGGTA 57.390 33.333 0.00 0.00 0.00 3.69
12 13 8.506196 TCTAATGCTAAACTAATATCAGGGGT 57.494 34.615 0.00 0.00 0.00 4.95
13 14 9.793259 TTTCTAATGCTAAACTAATATCAGGGG 57.207 33.333 0.00 0.00 0.00 4.79
24 25 8.893727 ACGCTAATTGATTTCTAATGCTAAACT 58.106 29.630 0.00 0.00 0.00 2.66
25 26 8.947940 CACGCTAATTGATTTCTAATGCTAAAC 58.052 33.333 0.00 0.00 0.00 2.01
26 27 8.888716 TCACGCTAATTGATTTCTAATGCTAAA 58.111 29.630 0.00 0.00 0.00 1.85
27 28 8.432110 TCACGCTAATTGATTTCTAATGCTAA 57.568 30.769 0.00 0.00 0.00 3.09
28 29 7.307396 GCTCACGCTAATTGATTTCTAATGCTA 60.307 37.037 0.00 0.00 0.00 3.49
29 30 6.512415 GCTCACGCTAATTGATTTCTAATGCT 60.512 38.462 0.00 0.00 0.00 3.79
30 31 5.622856 GCTCACGCTAATTGATTTCTAATGC 59.377 40.000 0.00 0.00 0.00 3.56
31 32 6.017605 AGGCTCACGCTAATTGATTTCTAATG 60.018 38.462 0.00 0.00 36.09 1.90
32 33 6.058183 AGGCTCACGCTAATTGATTTCTAAT 58.942 36.000 0.00 0.00 36.09 1.73
33 34 5.428253 AGGCTCACGCTAATTGATTTCTAA 58.572 37.500 0.00 0.00 36.09 2.10
34 35 5.023533 AGGCTCACGCTAATTGATTTCTA 57.976 39.130 0.00 0.00 36.09 2.10
35 36 3.873952 GAGGCTCACGCTAATTGATTTCT 59.126 43.478 10.25 0.00 36.09 2.52
36 37 3.002759 GGAGGCTCACGCTAATTGATTTC 59.997 47.826 17.69 0.00 36.09 2.17
37 38 2.945668 GGAGGCTCACGCTAATTGATTT 59.054 45.455 17.69 0.00 36.09 2.17
38 39 2.092968 TGGAGGCTCACGCTAATTGATT 60.093 45.455 17.69 0.00 36.09 2.57
39 40 1.486310 TGGAGGCTCACGCTAATTGAT 59.514 47.619 17.69 0.00 36.09 2.57
40 41 0.901827 TGGAGGCTCACGCTAATTGA 59.098 50.000 17.69 0.00 36.09 2.57
41 42 1.009829 GTGGAGGCTCACGCTAATTG 58.990 55.000 17.69 0.00 36.09 2.32
42 43 0.905357 AGTGGAGGCTCACGCTAATT 59.095 50.000 17.69 0.00 42.10 1.40
43 44 0.176680 CAGTGGAGGCTCACGCTAAT 59.823 55.000 17.69 0.00 42.10 1.73
44 45 0.898326 TCAGTGGAGGCTCACGCTAA 60.898 55.000 17.69 1.07 42.10 3.09
45 46 0.684479 ATCAGTGGAGGCTCACGCTA 60.684 55.000 17.69 7.30 42.10 4.26
46 47 1.548357 AATCAGTGGAGGCTCACGCT 61.548 55.000 17.69 14.16 42.10 5.07
47 48 0.674895 AAATCAGTGGAGGCTCACGC 60.675 55.000 17.69 12.11 42.10 5.34
48 49 1.081892 CAAATCAGTGGAGGCTCACG 58.918 55.000 17.69 9.04 42.10 4.35
49 50 2.079925 GTCAAATCAGTGGAGGCTCAC 58.920 52.381 17.69 12.33 37.89 3.51
50 51 1.003580 GGTCAAATCAGTGGAGGCTCA 59.996 52.381 17.69 0.00 0.00 4.26
51 52 1.743996 GGTCAAATCAGTGGAGGCTC 58.256 55.000 5.78 5.78 0.00 4.70
52 53 0.036010 CGGTCAAATCAGTGGAGGCT 60.036 55.000 0.00 0.00 0.00 4.58
53 54 1.648467 GCGGTCAAATCAGTGGAGGC 61.648 60.000 0.00 0.00 0.00 4.70
54 55 1.026718 GGCGGTCAAATCAGTGGAGG 61.027 60.000 0.00 0.00 0.00 4.30
55 56 1.361668 CGGCGGTCAAATCAGTGGAG 61.362 60.000 0.00 0.00 0.00 3.86
56 57 1.375396 CGGCGGTCAAATCAGTGGA 60.375 57.895 0.00 0.00 0.00 4.02
57 58 3.039202 GCGGCGGTCAAATCAGTGG 62.039 63.158 9.78 0.00 0.00 4.00
58 59 1.647545 ATGCGGCGGTCAAATCAGTG 61.648 55.000 9.78 0.00 0.00 3.66
59 60 1.377202 ATGCGGCGGTCAAATCAGT 60.377 52.632 9.78 0.00 0.00 3.41
60 61 1.063006 CATGCGGCGGTCAAATCAG 59.937 57.895 9.78 0.00 0.00 2.90
61 62 3.050166 GCATGCGGCGGTCAAATCA 62.050 57.895 9.78 0.00 0.00 2.57
62 63 2.278142 GCATGCGGCGGTCAAATC 60.278 61.111 9.78 0.00 0.00 2.17
79 80 1.602311 GGACCAAGGCAGCATATCTG 58.398 55.000 0.00 0.00 45.62 2.90
80 81 0.107456 CGGACCAAGGCAGCATATCT 59.893 55.000 0.00 0.00 0.00 1.98
81 82 0.106708 TCGGACCAAGGCAGCATATC 59.893 55.000 0.00 0.00 0.00 1.63
82 83 0.179045 GTCGGACCAAGGCAGCATAT 60.179 55.000 0.00 0.00 0.00 1.78
83 84 1.220749 GTCGGACCAAGGCAGCATA 59.779 57.895 0.00 0.00 0.00 3.14
84 85 2.045926 GTCGGACCAAGGCAGCAT 60.046 61.111 0.00 0.00 0.00 3.79
85 86 1.549243 TATGTCGGACCAAGGCAGCA 61.549 55.000 5.55 0.00 0.00 4.41
86 87 0.392461 TTATGTCGGACCAAGGCAGC 60.392 55.000 5.55 0.00 0.00 5.25
87 88 2.009774 CTTTATGTCGGACCAAGGCAG 58.990 52.381 5.55 0.00 0.00 4.85
88 89 1.339631 CCTTTATGTCGGACCAAGGCA 60.340 52.381 14.41 0.00 0.00 4.75
89 90 1.065709 TCCTTTATGTCGGACCAAGGC 60.066 52.381 19.00 0.00 34.99 4.35
90 91 3.007635 GTTCCTTTATGTCGGACCAAGG 58.992 50.000 18.23 18.23 36.15 3.61
91 92 2.671396 CGTTCCTTTATGTCGGACCAAG 59.329 50.000 5.55 5.42 0.00 3.61
92 93 2.613474 CCGTTCCTTTATGTCGGACCAA 60.613 50.000 5.55 0.00 43.22 3.67
93 94 1.066716 CCGTTCCTTTATGTCGGACCA 60.067 52.381 5.55 0.00 43.22 4.02
94 95 1.205417 TCCGTTCCTTTATGTCGGACC 59.795 52.381 5.55 0.00 44.04 4.46
95 96 2.660189 TCCGTTCCTTTATGTCGGAC 57.340 50.000 0.00 0.00 44.04 4.79
97 98 2.159014 TCCATCCGTTCCTTTATGTCGG 60.159 50.000 0.00 0.00 42.12 4.79
98 99 3.123804 CTCCATCCGTTCCTTTATGTCG 58.876 50.000 0.00 0.00 0.00 4.35
99 100 4.138487 ACTCCATCCGTTCCTTTATGTC 57.862 45.455 0.00 0.00 0.00 3.06
100 101 5.687166 TTACTCCATCCGTTCCTTTATGT 57.313 39.130 0.00 0.00 0.00 2.29
101 102 9.587772 CTATATTACTCCATCCGTTCCTTTATG 57.412 37.037 0.00 0.00 0.00 1.90
102 103 9.322769 ACTATATTACTCCATCCGTTCCTTTAT 57.677 33.333 0.00 0.00 0.00 1.40
103 104 8.716674 ACTATATTACTCCATCCGTTCCTTTA 57.283 34.615 0.00 0.00 0.00 1.85
104 105 7.613551 ACTATATTACTCCATCCGTTCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
105 106 8.716674 TTACTATATTACTCCATCCGTTCCTT 57.283 34.615 0.00 0.00 0.00 3.36
106 107 8.896722 ATTACTATATTACTCCATCCGTTCCT 57.103 34.615 0.00 0.00 0.00 3.36
107 108 9.367444 CAATTACTATATTACTCCATCCGTTCC 57.633 37.037 0.00 0.00 0.00 3.62
108 109 8.870879 GCAATTACTATATTACTCCATCCGTTC 58.129 37.037 0.00 0.00 0.00 3.95
109 110 7.822822 GGCAATTACTATATTACTCCATCCGTT 59.177 37.037 0.00 0.00 0.00 4.44
110 111 7.180408 AGGCAATTACTATATTACTCCATCCGT 59.820 37.037 0.00 0.00 0.00 4.69
111 112 7.556844 AGGCAATTACTATATTACTCCATCCG 58.443 38.462 0.00 0.00 0.00 4.18
284 285 7.734924 TGATGCAAATATTACTCCTAAGCTG 57.265 36.000 0.00 0.00 0.00 4.24
285 286 8.752005 TTTGATGCAAATATTACTCCTAAGCT 57.248 30.769 0.00 0.00 0.00 3.74
386 626 9.996554 CATTTTTGGGGGAACTATTTAATATCC 57.003 33.333 0.00 0.00 0.00 2.59
396 636 5.903589 TGTAAAACCATTTTTGGGGGAACTA 59.096 36.000 0.00 0.00 35.62 2.24
400 640 6.787957 TCTTATGTAAAACCATTTTTGGGGGA 59.212 34.615 0.00 0.00 35.62 4.81
449 689 9.535878 AACGCTTCAATAAAAAGTTGGAAATTA 57.464 25.926 0.00 0.00 0.00 1.40
472 713 8.648557 TCAAAGGAGATAATGTAATCTGAACG 57.351 34.615 0.00 0.00 36.33 3.95
560 801 7.683754 TGAGGGGTAATAAAAGTACTTTCCCTA 59.316 37.037 29.48 19.81 38.67 3.53
561 802 6.506413 TGAGGGGTAATAAAAGTACTTTCCCT 59.494 38.462 29.69 29.69 40.21 4.20
603 844 7.060421 TGACTAGGATTTGAAACTTTTGGAGT 58.940 34.615 0.00 0.00 41.47 3.85
604 845 7.510549 TGACTAGGATTTGAAACTTTTGGAG 57.489 36.000 0.00 0.00 0.00 3.86
616 857 8.936864 AGACGACTAAATTTTGACTAGGATTTG 58.063 33.333 6.63 0.00 0.00 2.32
626 867 6.993902 ACCACCTAAAGACGACTAAATTTTGA 59.006 34.615 6.63 0.00 0.00 2.69
632 873 5.106555 CGTAGACCACCTAAAGACGACTAAA 60.107 44.000 0.00 0.00 0.00 1.85
661 902 9.883142 AAACCAGAAGTAACAAAATTTCATTCA 57.117 25.926 0.00 0.00 0.00 2.57
688 934 4.321899 GGATCTTTGCATGGCAGTACAAAA 60.322 41.667 11.78 5.81 40.61 2.44
778 1024 7.094549 CCCTTAAAACGGATAATTGTCTCAACA 60.095 37.037 1.99 0.00 0.00 3.33
781 1027 5.355910 GCCCTTAAAACGGATAATTGTCTCA 59.644 40.000 1.99 0.00 0.00 3.27
783 1029 5.357032 CAGCCCTTAAAACGGATAATTGTCT 59.643 40.000 1.99 0.00 0.00 3.41
785 1031 4.401202 CCAGCCCTTAAAACGGATAATTGT 59.599 41.667 0.00 0.00 0.00 2.71
786 1032 4.401202 ACCAGCCCTTAAAACGGATAATTG 59.599 41.667 0.00 0.00 0.00 2.32
790 1036 2.356330 CCACCAGCCCTTAAAACGGATA 60.356 50.000 0.00 0.00 0.00 2.59
794 1040 2.188062 TACCACCAGCCCTTAAAACG 57.812 50.000 0.00 0.00 0.00 3.60
795 1041 3.493334 AGTTACCACCAGCCCTTAAAAC 58.507 45.455 0.00 0.00 0.00 2.43
800 1046 2.916934 TCATTAGTTACCACCAGCCCTT 59.083 45.455 0.00 0.00 0.00 3.95
802 1048 3.054655 TCTTCATTAGTTACCACCAGCCC 60.055 47.826 0.00 0.00 0.00 5.19
805 1051 5.160607 TGGTCTTCATTAGTTACCACCAG 57.839 43.478 0.00 0.00 35.34 4.00
806 1052 5.249622 TCATGGTCTTCATTAGTTACCACCA 59.750 40.000 0.00 0.00 42.69 4.17
815 1061 3.209410 GTGGCCTCATGGTCTTCATTAG 58.791 50.000 3.32 0.00 39.11 1.73
827 1073 2.746375 GGATGGACGGTGGCCTCAT 61.746 63.158 3.32 0.00 0.00 2.90
839 1085 1.281867 CTGGGCTACAAACTGGATGGA 59.718 52.381 0.00 0.00 0.00 3.41
892 1153 0.970937 TGTTTGTTTTGACCGGGCCA 60.971 50.000 3.83 0.00 0.00 5.36
894 1155 2.011540 TTTGTTTGTTTTGACCGGGC 57.988 45.000 6.32 1.57 0.00 6.13
897 1193 7.096844 CCTTTTTGTTTTTGTTTGTTTTGACCG 60.097 33.333 0.00 0.00 0.00 4.79
898 1194 7.306283 GCCTTTTTGTTTTTGTTTGTTTTGACC 60.306 33.333 0.00 0.00 0.00 4.02
900 1196 6.414987 CGCCTTTTTGTTTTTGTTTGTTTTGA 59.585 30.769 0.00 0.00 0.00 2.69
901 1197 6.567177 CGCCTTTTTGTTTTTGTTTGTTTTG 58.433 32.000 0.00 0.00 0.00 2.44
902 1198 5.174035 GCGCCTTTTTGTTTTTGTTTGTTTT 59.826 32.000 0.00 0.00 0.00 2.43
903 1199 4.677378 GCGCCTTTTTGTTTTTGTTTGTTT 59.323 33.333 0.00 0.00 0.00 2.83
906 1202 4.077063 AGCGCCTTTTTGTTTTTGTTTG 57.923 36.364 2.29 0.00 0.00 2.93
921 1224 3.394836 GACCCTCCAGAAGCGCCT 61.395 66.667 2.29 0.00 0.00 5.52
958 1261 0.957362 GCTCTGCTCTGCTTTGGTTT 59.043 50.000 0.00 0.00 0.00 3.27
959 1262 0.179009 TGCTCTGCTCTGCTTTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
969 1290 0.455005 GGGATTGCTTTGCTCTGCTC 59.545 55.000 0.00 0.00 0.00 4.26
982 1303 0.258774 ATCCTTCAACCGGGGGATTG 59.741 55.000 6.32 0.35 35.30 2.67
993 1314 1.445410 CGCCGTCGTCATCCTTCAA 60.445 57.895 0.00 0.00 0.00 2.69
1136 1457 7.096477 GGAAGACGATTGTTGAATTTGAAGTTG 60.096 37.037 0.00 0.00 0.00 3.16
1148 1469 2.629051 GGTAGGGGAAGACGATTGTTG 58.371 52.381 0.00 0.00 0.00 3.33
1149 1470 1.558294 GGGTAGGGGAAGACGATTGTT 59.442 52.381 0.00 0.00 0.00 2.83
1150 1471 1.201424 GGGTAGGGGAAGACGATTGT 58.799 55.000 0.00 0.00 0.00 2.71
1180 1501 3.036084 CGCGGAATCGGAATCGGG 61.036 66.667 0.00 2.67 36.95 5.14
1249 1596 1.743995 CCCAATCCCAACGACGGAC 60.744 63.158 0.00 0.00 30.39 4.79
1269 1641 2.590092 CTAGCACCCTTTCCCCGG 59.410 66.667 0.00 0.00 0.00 5.73
1310 1686 1.739049 GGTGCGGAGATCTGGAGAG 59.261 63.158 0.00 0.00 0.00 3.20
1311 1687 2.121538 CGGTGCGGAGATCTGGAGA 61.122 63.158 0.00 0.00 0.00 3.71
1326 1728 2.186903 CGCCAGCAATCCTACGGT 59.813 61.111 0.00 0.00 0.00 4.83
1346 1749 0.169672 TACACGAGGTTGCTAGCGAC 59.830 55.000 24.68 24.68 0.00 5.19
1348 1751 0.801067 GGTACACGAGGTTGCTAGCG 60.801 60.000 10.77 0.00 0.00 4.26
1366 1804 2.125713 TACACACATCGCTGGCGG 60.126 61.111 14.94 2.59 40.25 6.13
1372 1810 1.391485 CAGAAGCACTACACACATCGC 59.609 52.381 0.00 0.00 0.00 4.58
1390 1828 0.037975 GCCCCAAACAACAGATGCAG 60.038 55.000 0.00 0.00 0.00 4.41
1399 1837 1.055040 CCAATTCAGGCCCCAAACAA 58.945 50.000 0.00 0.00 0.00 2.83
1401 1839 1.982430 CCCAATTCAGGCCCCAAAC 59.018 57.895 0.00 0.00 0.00 2.93
1402 1840 1.917787 GCCCAATTCAGGCCCCAAA 60.918 57.895 0.00 0.00 45.16 3.28
1457 1907 0.973496 AACCAAACCAAACGGCAGGT 60.973 50.000 0.00 0.00 40.61 4.00
1463 1913 2.003301 CCAACCAAACCAAACCAAACG 58.997 47.619 0.00 0.00 0.00 3.60
1469 1919 3.431068 CCCTAACACCAACCAAACCAAAC 60.431 47.826 0.00 0.00 0.00 2.93
1476 1926 1.133730 GTGACCCCTAACACCAACCAA 60.134 52.381 0.00 0.00 0.00 3.67
1477 1927 0.475044 GTGACCCCTAACACCAACCA 59.525 55.000 0.00 0.00 0.00 3.67
1478 1928 3.334413 GTGACCCCTAACACCAACC 57.666 57.895 0.00 0.00 0.00 3.77
1489 2857 3.324713 CCTGATCCAGGTGACCCC 58.675 66.667 0.00 0.00 45.82 4.95
1503 2871 5.478407 GTTTATTGGGTTGGAATTGACCTG 58.522 41.667 0.00 0.00 36.18 4.00
1534 2902 2.178912 TGCAGCAAACAGGTACTACC 57.821 50.000 0.00 0.00 36.02 3.18
1559 2930 7.380333 TGACAACTACAGTAACTAATTGTGTCG 59.620 37.037 0.00 0.00 0.00 4.35
1560 2931 8.583810 TGACAACTACAGTAACTAATTGTGTC 57.416 34.615 0.00 0.00 0.00 3.67
1562 2933 8.280497 GGTTGACAACTACAGTAACTAATTGTG 58.720 37.037 17.52 0.00 0.00 3.33
1563 2934 7.988599 TGGTTGACAACTACAGTAACTAATTGT 59.011 33.333 17.52 0.00 0.00 2.71
1564 2935 8.373048 TGGTTGACAACTACAGTAACTAATTG 57.627 34.615 17.52 0.00 0.00 2.32
1597 3080 2.159037 CAGACTCGCTCACGTTACTACA 59.841 50.000 0.00 0.00 41.18 2.74
1598 3081 2.159234 ACAGACTCGCTCACGTTACTAC 59.841 50.000 0.00 0.00 41.18 2.73
1599 3082 2.420642 ACAGACTCGCTCACGTTACTA 58.579 47.619 0.00 0.00 41.18 1.82
1605 3088 0.975544 CGTAAACAGACTCGCTCACG 59.024 55.000 0.00 0.00 42.01 4.35
1608 3091 0.708918 GCACGTAAACAGACTCGCTC 59.291 55.000 0.00 0.00 0.00 5.03
1618 3101 1.802365 CCCAGGTTAGTGCACGTAAAC 59.198 52.381 12.01 16.20 0.00 2.01
1629 3113 4.730949 TTGTTCGACTATCCCAGGTTAG 57.269 45.455 0.00 1.01 0.00 2.34
1663 3151 5.064579 TGTTGTATGTAGGATGAACATTGCG 59.935 40.000 0.00 0.00 38.49 4.85
1666 3154 8.296713 GTGTTTGTTGTATGTAGGATGAACATT 58.703 33.333 0.00 0.00 38.49 2.71
1676 3169 9.607285 GACAAAATAGGTGTTTGTTGTATGTAG 57.393 33.333 4.22 0.00 46.50 2.74
1683 3176 5.591099 AGCAGACAAAATAGGTGTTTGTTG 58.409 37.500 4.22 6.11 46.50 3.33
1707 3269 2.515523 CTTGATGGAGCCTGCCGG 60.516 66.667 0.00 0.00 0.00 6.13
1709 3271 0.179051 CTCTCTTGATGGAGCCTGCC 60.179 60.000 0.00 0.00 33.70 4.85
1712 3274 2.244486 TCACTCTCTTGATGGAGCCT 57.756 50.000 0.00 0.00 33.70 4.58
1774 3347 5.817296 GGTTAACTAATAAACCTACCCCACG 59.183 44.000 5.42 0.00 41.63 4.94
1839 3485 2.438434 CCCCTAACCCTGCGCAAG 60.438 66.667 13.05 4.91 43.44 4.01
1841 3487 2.931105 TTCCCCTAACCCTGCGCA 60.931 61.111 10.98 10.98 0.00 6.09
1842 3488 2.124695 CTTCCCCTAACCCTGCGC 60.125 66.667 0.00 0.00 0.00 6.09
1843 3489 1.345715 ATCCTTCCCCTAACCCTGCG 61.346 60.000 0.00 0.00 0.00 5.18
1844 3490 0.474614 GATCCTTCCCCTAACCCTGC 59.525 60.000 0.00 0.00 0.00 4.85
1845 3491 1.141185 GGATCCTTCCCCTAACCCTG 58.859 60.000 3.84 0.00 35.84 4.45
1846 3492 0.400093 CGGATCCTTCCCCTAACCCT 60.400 60.000 10.75 0.00 39.01 4.34
1847 3493 0.399519 TCGGATCCTTCCCCTAACCC 60.400 60.000 10.75 0.00 39.01 4.11
1848 3494 1.049402 CTCGGATCCTTCCCCTAACC 58.951 60.000 10.75 0.00 39.01 2.85
1849 3495 0.393448 GCTCGGATCCTTCCCCTAAC 59.607 60.000 10.75 0.00 39.01 2.34
1850 3496 0.763223 GGCTCGGATCCTTCCCCTAA 60.763 60.000 10.75 0.00 39.01 2.69
1851 3497 1.152312 GGCTCGGATCCTTCCCCTA 60.152 63.158 10.75 0.00 39.01 3.53
1852 3498 2.446802 GGCTCGGATCCTTCCCCT 60.447 66.667 10.75 0.00 39.01 4.79
1854 3500 0.179043 GAAAGGCTCGGATCCTTCCC 60.179 60.000 13.15 6.75 42.75 3.97
1856 3502 0.833949 AGGAAAGGCTCGGATCCTTC 59.166 55.000 13.15 5.41 42.75 3.46
1857 3503 1.290134 AAGGAAAGGCTCGGATCCTT 58.710 50.000 10.75 7.30 45.21 3.36
1859 3505 1.098129 GCAAGGAAAGGCTCGGATCC 61.098 60.000 0.00 0.00 0.00 3.36
1860 3506 1.432270 CGCAAGGAAAGGCTCGGATC 61.432 60.000 0.00 0.00 0.00 3.36
1861 3507 1.450312 CGCAAGGAAAGGCTCGGAT 60.450 57.895 0.00 0.00 0.00 4.18
1862 3508 2.047274 CGCAAGGAAAGGCTCGGA 60.047 61.111 0.00 0.00 0.00 4.55
1863 3509 1.515521 AAACGCAAGGAAAGGCTCGG 61.516 55.000 0.00 0.00 46.39 4.63
1864 3510 0.110192 GAAACGCAAGGAAAGGCTCG 60.110 55.000 0.00 0.00 46.39 5.03
1865 3511 1.068954 CAGAAACGCAAGGAAAGGCTC 60.069 52.381 0.00 0.00 46.39 4.70
1867 3513 0.664466 GCAGAAACGCAAGGAAAGGC 60.664 55.000 0.00 0.00 46.39 4.35
1868 3514 0.667993 TGCAGAAACGCAAGGAAAGG 59.332 50.000 0.00 0.00 46.39 3.11
1869 3515 2.490328 TTGCAGAAACGCAAGGAAAG 57.510 45.000 0.00 0.00 46.61 2.62
1876 3522 1.227943 AGCCTCTTGCAGAAACGCA 60.228 52.632 0.00 0.00 44.83 5.24
1877 3523 1.208614 CAGCCTCTTGCAGAAACGC 59.791 57.895 0.00 0.00 44.83 4.84
1878 3524 0.947244 AACAGCCTCTTGCAGAAACG 59.053 50.000 0.00 0.00 44.83 3.60
1880 3526 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
1881 3527 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
1882 3528 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
1883 3529 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
1894 3540 1.060729 TGGGTCGAATCCTGGAAACA 58.939 50.000 0.00 0.00 39.59 2.83
1895 3541 2.017049 CATGGGTCGAATCCTGGAAAC 58.983 52.381 0.00 0.00 0.00 2.78
1896 3542 1.912731 TCATGGGTCGAATCCTGGAAA 59.087 47.619 0.00 0.00 0.00 3.13
1898 3544 0.830648 GTCATGGGTCGAATCCTGGA 59.169 55.000 0.00 0.00 0.00 3.86
1899 3545 0.179045 GGTCATGGGTCGAATCCTGG 60.179 60.000 7.46 0.00 0.00 4.45
1901 3547 1.123928 GAGGTCATGGGTCGAATCCT 58.876 55.000 7.46 0.00 0.00 3.24
1902 3548 0.830648 TGAGGTCATGGGTCGAATCC 59.169 55.000 0.00 0.00 0.00 3.01
1903 3549 2.918712 ATGAGGTCATGGGTCGAATC 57.081 50.000 0.00 0.00 34.83 2.52
1905 3551 2.039418 CCTATGAGGTCATGGGTCGAA 58.961 52.381 12.99 0.00 46.25 3.71
1906 3552 1.704641 CCTATGAGGTCATGGGTCGA 58.295 55.000 12.99 0.00 46.25 4.20
1911 3557 2.569059 CTGTTGCCTATGAGGTCATGG 58.431 52.381 2.56 0.00 37.80 3.66
1914 3560 1.279496 AGCTGTTGCCTATGAGGTCA 58.721 50.000 0.00 0.00 37.80 4.02
1915 3561 2.409948 AAGCTGTTGCCTATGAGGTC 57.590 50.000 0.00 0.00 37.80 3.85
1916 3562 2.887151 AAAGCTGTTGCCTATGAGGT 57.113 45.000 0.00 0.00 37.80 3.85
1917 3563 2.945668 GGTAAAGCTGTTGCCTATGAGG 59.054 50.000 7.98 0.00 40.80 3.86
1918 3564 2.609459 CGGTAAAGCTGTTGCCTATGAG 59.391 50.000 11.70 0.00 40.80 2.90
1919 3565 2.627945 CGGTAAAGCTGTTGCCTATGA 58.372 47.619 11.70 0.00 40.80 2.15
1920 3566 1.064060 GCGGTAAAGCTGTTGCCTATG 59.936 52.381 11.70 1.80 40.80 2.23
1923 3569 3.668386 GCGGTAAAGCTGTTGCCT 58.332 55.556 11.70 0.00 40.80 4.75
1943 3589 1.910580 TAAGAAGGGGAGCCTTGGCG 61.911 60.000 5.95 0.00 0.00 5.69
1944 3590 0.331616 TTAAGAAGGGGAGCCTTGGC 59.668 55.000 2.97 2.97 0.00 4.52
1945 3591 1.341089 GGTTAAGAAGGGGAGCCTTGG 60.341 57.143 0.00 0.00 0.00 3.61
1949 3595 2.778270 ACTATGGTTAAGAAGGGGAGCC 59.222 50.000 0.00 0.00 0.00 4.70
1950 3596 3.454812 TGACTATGGTTAAGAAGGGGAGC 59.545 47.826 0.00 0.00 0.00 4.70
1954 3600 7.184067 AGTTACTGACTATGGTTAAGAAGGG 57.816 40.000 0.71 0.00 36.65 3.95
1955 3601 9.583765 GTTAGTTACTGACTATGGTTAAGAAGG 57.416 37.037 0.00 0.00 40.44 3.46
1957 3603 9.918630 GTGTTAGTTACTGACTATGGTTAAGAA 57.081 33.333 8.68 0.00 40.44 2.52
1965 3636 9.627395 GCCATATAGTGTTAGTTACTGACTATG 57.373 37.037 16.78 12.15 40.44 2.23
1969 3640 5.919141 CGGCCATATAGTGTTAGTTACTGAC 59.081 44.000 2.24 0.00 0.00 3.51
1976 3647 4.404715 ACAGTTCGGCCATATAGTGTTAGT 59.595 41.667 2.24 0.00 0.00 2.24
1977 3648 4.945246 ACAGTTCGGCCATATAGTGTTAG 58.055 43.478 2.24 0.00 0.00 2.34
1993 3664 1.881973 TGAAGCCTGATGCAACAGTTC 59.118 47.619 21.00 18.19 44.83 3.01
1998 3669 0.110056 CGTGTGAAGCCTGATGCAAC 60.110 55.000 0.00 0.00 44.83 4.17
2090 3766 4.082463 GGGCGAGTATTGAGAGGAAGATAG 60.082 50.000 0.00 0.00 0.00 2.08
2106 3782 2.526873 ACACAAGAGGGGGCGAGT 60.527 61.111 0.00 0.00 0.00 4.18
2109 3785 4.641645 TGCACACAAGAGGGGGCG 62.642 66.667 0.00 0.00 0.00 6.13
2110 3786 2.674380 CTGCACACAAGAGGGGGC 60.674 66.667 0.00 0.00 0.00 5.80
2115 3791 2.551459 CCCTCTTTTCTGCACACAAGAG 59.449 50.000 10.06 10.06 41.31 2.85
2116 3792 2.575532 CCCTCTTTTCTGCACACAAGA 58.424 47.619 0.00 0.00 0.00 3.02
2120 3796 0.823356 TGGCCCTCTTTTCTGCACAC 60.823 55.000 0.00 0.00 0.00 3.82
2137 3813 1.072965 ACCTCCTCTTGAGTTTGCTGG 59.927 52.381 0.00 0.00 39.65 4.85
2197 3873 1.300971 TGGATGAGAAGTGCTTGCGC 61.301 55.000 0.00 0.00 0.00 6.09
2256 3933 5.117584 TGCACAAAATGACAAAGAAAGCAT 58.882 33.333 0.00 0.00 0.00 3.79
2432 4111 7.501225 ACAGACTTTGCTAAAGCTTTAAGGTTA 59.499 33.333 19.10 0.00 42.27 2.85
2462 4141 5.609423 TGCTGCCTTGAAAATAAACAACAT 58.391 33.333 0.00 0.00 0.00 2.71
2467 4146 8.652810 ATCATTATGCTGCCTTGAAAATAAAC 57.347 30.769 0.00 0.00 0.00 2.01
2468 4147 9.669887 AAATCATTATGCTGCCTTGAAAATAAA 57.330 25.926 0.00 0.00 0.00 1.40
2470 4149 9.748708 GTAAATCATTATGCTGCCTTGAAAATA 57.251 29.630 0.00 0.00 0.00 1.40
2471 4150 8.480501 AGTAAATCATTATGCTGCCTTGAAAAT 58.519 29.630 0.00 0.00 0.00 1.82
2616 4296 9.587772 TGATTGATAAGAGCAAGAACTAACTAC 57.412 33.333 0.00 0.00 0.00 2.73
2747 4434 3.429372 AACAGTTTCAGCCGGCCCA 62.429 57.895 26.15 6.87 0.00 5.36
2786 4473 6.451393 TCACACCCAATAACAAAGTTTATGC 58.549 36.000 0.00 0.00 0.00 3.14
2972 4703 4.026886 CGTCGTCATCATCGCTGAATAAAA 60.027 41.667 0.00 0.00 34.37 1.52
2991 4723 1.183511 CAGTGTCATCGTCATCGTCG 58.816 55.000 0.00 0.00 38.33 5.12
2997 4754 0.038251 GTGCCTCAGTGTCATCGTCA 60.038 55.000 0.00 0.00 0.00 4.35
3064 4821 7.062488 GCGAAGAAAACAACAAACCTTTCTAAA 59.938 33.333 0.00 0.00 37.18 1.85
3089 4846 6.261826 AGAGCACCTCAAAATGATAATACAGC 59.738 38.462 0.00 0.00 32.06 4.40
3300 5088 4.742659 TGGCAGCATTCTTTCGTTAAAAAC 59.257 37.500 0.00 0.00 0.00 2.43
3361 5149 0.392998 ATCATCCCACCTGCGACAAC 60.393 55.000 0.00 0.00 0.00 3.32
3502 5312 6.237901 ACAGTCCAGACAACATAAAGCATAA 58.762 36.000 0.00 0.00 0.00 1.90
3524 5334 1.839354 TCCTCTTCCAGCATGCATACA 59.161 47.619 21.98 0.00 31.97 2.29
3721 5531 4.798263 GCGACAATTAATATGGGACGGAGA 60.798 45.833 0.00 0.00 0.00 3.71
3760 5570 7.709182 CGTCCCATATTAACTGTCACTGAAATA 59.291 37.037 0.00 0.00 0.00 1.40
3773 5583 2.970640 ACTCCCTCCGTCCCATATTAAC 59.029 50.000 0.00 0.00 0.00 2.01
3896 5709 8.748380 AGCACTAAATGAATTCAGCTAAAAAC 57.252 30.769 14.54 0.47 0.00 2.43
3915 5750 6.272318 CAGAAAATTGGTGTTTCAAGCACTA 58.728 36.000 4.22 0.00 37.43 2.74
3939 5774 1.838073 TTCCCAAGAGAAGGCCGACC 61.838 60.000 0.00 0.00 0.00 4.79
3986 5822 4.949856 TGGCAATCAAATAGAGAAGGAACC 59.050 41.667 0.00 0.00 0.00 3.62
4086 5982 1.351017 GAACCAGGATGTCAACCTCCA 59.649 52.381 0.00 0.00 35.35 3.86
4091 5987 2.859165 TGGAGAACCAGGATGTCAAC 57.141 50.000 0.00 0.00 41.77 3.18
4175 6075 3.502211 ACTCACTCGGCAATTAAACAAGG 59.498 43.478 0.00 0.00 0.00 3.61
4176 6076 4.749245 ACTCACTCGGCAATTAAACAAG 57.251 40.909 0.00 0.00 0.00 3.16
4177 6077 4.819630 AGAACTCACTCGGCAATTAAACAA 59.180 37.500 0.00 0.00 0.00 2.83
4330 6244 9.971922 AAAATCCAAAGTAGAACAGAGAAAATG 57.028 29.630 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.