Multiple sequence alignment - TraesCS5A01G341100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G341100 chr5A 100.000 3408 0 0 1 3408 547393079 547396486 0.000000e+00 6294.0
1 TraesCS5A01G341100 chr5A 96.087 2862 44 11 579 3408 44279440 44276615 0.000000e+00 4602.0
2 TraesCS5A01G341100 chr6A 97.129 2856 34 10 579 3408 223588522 223585689 0.000000e+00 4776.0
3 TraesCS5A01G341100 chr4B 96.257 2859 65 11 579 3408 661152349 661149504 0.000000e+00 4649.0
4 TraesCS5A01G341100 chr4B 95.812 1146 21 3 578 1697 621762623 621761479 0.000000e+00 1825.0
5 TraesCS5A01G341100 chr7B 96.330 2861 36 7 579 3408 714452956 714450134 0.000000e+00 4638.0
6 TraesCS5A01G341100 chr7B 98.539 1779 20 2 1636 3408 714530546 714528768 0.000000e+00 3136.0
7 TraesCS5A01G341100 chr7B 96.473 1049 12 1 579 1602 214068530 214067482 0.000000e+00 1709.0
8 TraesCS5A01G341100 chr7B 100.000 88 0 0 249 336 616099849 616099762 2.720000e-36 163.0
9 TraesCS5A01G341100 chr2A 96.257 2859 43 6 577 3408 734935072 734932251 0.000000e+00 4628.0
10 TraesCS5A01G341100 chr2A 95.175 2860 69 15 579 3408 2768049 2765229 0.000000e+00 4453.0
11 TraesCS5A01G341100 chr2A 93.458 107 5 1 237 343 500032845 500032949 1.270000e-34 158.0
12 TraesCS5A01G341100 chr6B 96.151 2858 44 5 579 3408 704743237 704746056 0.000000e+00 4608.0
13 TraesCS5A01G341100 chr3B 96.124 2864 37 6 577 3408 60270839 60273660 0.000000e+00 4606.0
14 TraesCS5A01G341100 chrUn 95.948 2863 47 19 579 3408 8808795 8805969 0.000000e+00 4580.0
15 TraesCS5A01G341100 chrUn 96.696 575 17 2 1124 1697 449845893 449845320 0.000000e+00 955.0
16 TraesCS5A01G341100 chrUn 84.259 108 13 3 364 471 63280275 63280172 6.020000e-18 102.0
17 TraesCS5A01G341100 chrUn 76.119 201 22 13 351 546 63262094 63262273 7.840000e-12 82.4
18 TraesCS5A01G341100 chr7A 95.979 2860 46 12 579 3406 13133456 13130634 0.000000e+00 4580.0
19 TraesCS5A01G341100 chr7A 95.633 1145 23 3 579 1697 707670450 707671593 0.000000e+00 1812.0
20 TraesCS5A01G341100 chr5D 86.235 247 12 7 337 578 432799699 432799928 7.300000e-62 248.0
21 TraesCS5A01G341100 chr5D 96.809 94 1 2 243 335 293405770 293405678 4.550000e-34 156.0
22 TraesCS5A01G341100 chr5D 76.617 201 21 14 351 546 432653913 432654092 1.680000e-13 87.9
23 TraesCS5A01G341100 chr1B 100.000 88 0 0 249 336 453132585 453132498 2.720000e-36 163.0
24 TraesCS5A01G341100 chr1B 93.333 105 5 1 232 336 47517447 47517345 1.640000e-33 154.0
25 TraesCS5A01G341100 chr1B 91.892 111 3 6 226 336 371141208 371141104 2.120000e-32 150.0
26 TraesCS5A01G341100 chr4A 92.174 115 5 3 251 361 537598005 537597891 3.520000e-35 159.0
27 TraesCS5A01G341100 chr6D 94.175 103 5 1 242 344 443958613 443958512 4.550000e-34 156.0
28 TraesCS5A01G341100 chr6D 91.589 107 9 0 230 336 454735619 454735725 7.620000e-32 148.0
29 TraesCS5A01G341100 chr5B 80.342 117 12 6 433 546 525433631 525433739 1.010000e-10 78.7
30 TraesCS5A01G341100 chr5B 100.000 39 0 0 433 471 525419594 525419632 4.720000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G341100 chr5A 547393079 547396486 3407 False 6294 6294 100.000 1 3408 1 chr5A.!!$F1 3407
1 TraesCS5A01G341100 chr5A 44276615 44279440 2825 True 4602 4602 96.087 579 3408 1 chr5A.!!$R1 2829
2 TraesCS5A01G341100 chr6A 223585689 223588522 2833 True 4776 4776 97.129 579 3408 1 chr6A.!!$R1 2829
3 TraesCS5A01G341100 chr4B 661149504 661152349 2845 True 4649 4649 96.257 579 3408 1 chr4B.!!$R2 2829
4 TraesCS5A01G341100 chr4B 621761479 621762623 1144 True 1825 1825 95.812 578 1697 1 chr4B.!!$R1 1119
5 TraesCS5A01G341100 chr7B 714450134 714452956 2822 True 4638 4638 96.330 579 3408 1 chr7B.!!$R3 2829
6 TraesCS5A01G341100 chr7B 714528768 714530546 1778 True 3136 3136 98.539 1636 3408 1 chr7B.!!$R4 1772
7 TraesCS5A01G341100 chr7B 214067482 214068530 1048 True 1709 1709 96.473 579 1602 1 chr7B.!!$R1 1023
8 TraesCS5A01G341100 chr2A 734932251 734935072 2821 True 4628 4628 96.257 577 3408 1 chr2A.!!$R2 2831
9 TraesCS5A01G341100 chr2A 2765229 2768049 2820 True 4453 4453 95.175 579 3408 1 chr2A.!!$R1 2829
10 TraesCS5A01G341100 chr6B 704743237 704746056 2819 False 4608 4608 96.151 579 3408 1 chr6B.!!$F1 2829
11 TraesCS5A01G341100 chr3B 60270839 60273660 2821 False 4606 4606 96.124 577 3408 1 chr3B.!!$F1 2831
12 TraesCS5A01G341100 chrUn 8805969 8808795 2826 True 4580 4580 95.948 579 3408 1 chrUn.!!$R1 2829
13 TraesCS5A01G341100 chrUn 449845320 449845893 573 True 955 955 96.696 1124 1697 1 chrUn.!!$R3 573
14 TraesCS5A01G341100 chr7A 13130634 13133456 2822 True 4580 4580 95.979 579 3406 1 chr7A.!!$R1 2827
15 TraesCS5A01G341100 chr7A 707670450 707671593 1143 False 1812 1812 95.633 579 1697 1 chr7A.!!$F1 1118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 382 0.106819 GGATGCCAGACAAGAGCCAT 60.107 55.0 0.00 0.0 0.00 4.40 F
451 452 0.181114 AGCAGGTGCAAGTCAAGTCA 59.819 50.0 4.48 0.0 45.16 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1746 8.507249 AGCAACAGAGATAAATTCAGTTAACAC 58.493 33.333 8.61 0.0 0.0 3.32 R
2450 2528 1.340017 TGACATTCCAAGGCCAGCTAC 60.340 52.381 5.01 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.847327 AGATGTCTGGTGTGTTGGAG 57.153 50.000 0.00 0.00 0.00 3.86
22 23 1.160137 GATGTCTGGTGTGTTGGAGC 58.840 55.000 0.00 0.00 0.00 4.70
23 24 0.473755 ATGTCTGGTGTGTTGGAGCA 59.526 50.000 0.00 0.00 0.00 4.26
24 25 0.179048 TGTCTGGTGTGTTGGAGCAG 60.179 55.000 0.00 0.00 39.76 4.24
25 26 0.886490 GTCTGGTGTGTTGGAGCAGG 60.886 60.000 0.00 0.00 39.06 4.85
26 27 2.203337 TGGTGTGTTGGAGCAGGC 60.203 61.111 0.00 0.00 0.00 4.85
27 28 3.357079 GGTGTGTTGGAGCAGGCG 61.357 66.667 0.00 0.00 0.00 5.52
28 29 4.030452 GTGTGTTGGAGCAGGCGC 62.030 66.667 0.00 0.00 38.99 6.53
29 30 4.560743 TGTGTTGGAGCAGGCGCA 62.561 61.111 10.83 0.00 42.27 6.09
30 31 3.730761 GTGTTGGAGCAGGCGCAG 61.731 66.667 10.83 1.27 42.27 5.18
43 44 2.974148 CGCAGCCAGCACACAAGA 60.974 61.111 0.00 0.00 46.13 3.02
44 45 2.952245 GCAGCCAGCACACAAGAG 59.048 61.111 0.00 0.00 44.79 2.85
45 46 2.952245 CAGCCAGCACACAAGAGC 59.048 61.111 0.00 0.00 0.00 4.09
46 47 2.667536 AGCCAGCACACAAGAGCG 60.668 61.111 0.00 0.00 36.39 5.03
47 48 3.730761 GCCAGCACACAAGAGCGG 61.731 66.667 0.00 0.00 36.39 5.52
48 49 2.031012 CCAGCACACAAGAGCGGA 59.969 61.111 0.00 0.00 36.39 5.54
49 50 1.597854 CCAGCACACAAGAGCGGAA 60.598 57.895 0.00 0.00 36.39 4.30
50 51 0.957395 CCAGCACACAAGAGCGGAAT 60.957 55.000 0.00 0.00 36.39 3.01
51 52 1.675714 CCAGCACACAAGAGCGGAATA 60.676 52.381 0.00 0.00 36.39 1.75
52 53 1.394917 CAGCACACAAGAGCGGAATAC 59.605 52.381 0.00 0.00 36.39 1.89
53 54 1.001974 AGCACACAAGAGCGGAATACA 59.998 47.619 0.00 0.00 36.39 2.29
54 55 1.804151 GCACACAAGAGCGGAATACAA 59.196 47.619 0.00 0.00 0.00 2.41
55 56 2.412847 GCACACAAGAGCGGAATACAAC 60.413 50.000 0.00 0.00 0.00 3.32
56 57 2.159627 CACACAAGAGCGGAATACAACC 59.840 50.000 0.00 0.00 0.00 3.77
57 58 2.224426 ACACAAGAGCGGAATACAACCA 60.224 45.455 0.00 0.00 0.00 3.67
58 59 3.009723 CACAAGAGCGGAATACAACCAT 58.990 45.455 0.00 0.00 0.00 3.55
59 60 3.440173 CACAAGAGCGGAATACAACCATT 59.560 43.478 0.00 0.00 0.00 3.16
60 61 3.440173 ACAAGAGCGGAATACAACCATTG 59.560 43.478 0.00 0.00 0.00 2.82
62 63 3.009723 AGAGCGGAATACAACCATTGTG 58.990 45.455 4.46 0.00 45.03 3.33
63 64 1.472480 AGCGGAATACAACCATTGTGC 59.528 47.619 4.46 0.00 45.03 4.57
64 65 1.472480 GCGGAATACAACCATTGTGCT 59.528 47.619 4.46 0.00 45.03 4.40
65 66 2.477863 GCGGAATACAACCATTGTGCTC 60.478 50.000 4.46 1.36 45.03 4.26
66 67 2.746904 CGGAATACAACCATTGTGCTCA 59.253 45.455 4.46 0.00 45.03 4.26
67 68 3.378112 CGGAATACAACCATTGTGCTCAT 59.622 43.478 4.46 0.00 45.03 2.90
68 69 4.496341 CGGAATACAACCATTGTGCTCATC 60.496 45.833 4.46 0.00 45.03 2.92
69 70 4.496341 GGAATACAACCATTGTGCTCATCG 60.496 45.833 4.46 0.00 45.03 3.84
70 71 0.523072 ACAACCATTGTGCTCATCGC 59.477 50.000 0.00 0.00 43.48 4.58
71 72 0.179156 CAACCATTGTGCTCATCGCC 60.179 55.000 0.00 0.00 38.05 5.54
72 73 0.608856 AACCATTGTGCTCATCGCCA 60.609 50.000 0.00 0.00 38.05 5.69
73 74 1.308069 ACCATTGTGCTCATCGCCAC 61.308 55.000 0.00 0.00 38.05 5.01
74 75 1.430632 CATTGTGCTCATCGCCACC 59.569 57.895 0.00 0.00 38.05 4.61
75 76 1.002257 ATTGTGCTCATCGCCACCA 60.002 52.632 0.00 0.00 38.05 4.17
76 77 1.028330 ATTGTGCTCATCGCCACCAG 61.028 55.000 0.00 0.00 38.05 4.00
77 78 3.503363 GTGCTCATCGCCACCAGC 61.503 66.667 0.00 0.00 38.05 4.85
86 87 3.123620 GCCACCAGCGCAGAAGAG 61.124 66.667 11.47 0.00 0.00 2.85
87 88 3.123620 CCACCAGCGCAGAAGAGC 61.124 66.667 11.47 0.00 41.26 4.09
88 89 2.357881 CACCAGCGCAGAAGAGCA 60.358 61.111 11.47 0.00 43.61 4.26
89 90 2.047465 ACCAGCGCAGAAGAGCAG 60.047 61.111 11.47 0.00 43.61 4.24
90 91 2.263852 CCAGCGCAGAAGAGCAGA 59.736 61.111 11.47 0.00 43.61 4.26
91 92 1.810441 CCAGCGCAGAAGAGCAGAG 60.810 63.158 11.47 0.00 43.61 3.35
92 93 1.079956 CAGCGCAGAAGAGCAGAGT 60.080 57.895 11.47 0.00 43.61 3.24
93 94 1.079956 AGCGCAGAAGAGCAGAGTG 60.080 57.895 11.47 0.00 43.61 3.51
94 95 1.373999 GCGCAGAAGAGCAGAGTGT 60.374 57.895 0.30 0.00 40.58 3.55
95 96 0.109086 GCGCAGAAGAGCAGAGTGTA 60.109 55.000 0.30 0.00 40.58 2.90
96 97 1.906757 CGCAGAAGAGCAGAGTGTAG 58.093 55.000 0.00 0.00 0.00 2.74
97 98 1.639280 GCAGAAGAGCAGAGTGTAGC 58.361 55.000 0.00 0.00 0.00 3.58
98 99 1.738700 GCAGAAGAGCAGAGTGTAGCC 60.739 57.143 0.00 0.00 0.00 3.93
99 100 1.547820 CAGAAGAGCAGAGTGTAGCCA 59.452 52.381 0.00 0.00 0.00 4.75
100 101 1.824230 AGAAGAGCAGAGTGTAGCCAG 59.176 52.381 0.00 0.00 0.00 4.85
101 102 1.548269 GAAGAGCAGAGTGTAGCCAGT 59.452 52.381 0.00 0.00 0.00 4.00
102 103 0.894141 AGAGCAGAGTGTAGCCAGTG 59.106 55.000 0.00 0.00 0.00 3.66
103 104 0.739112 GAGCAGAGTGTAGCCAGTGC 60.739 60.000 0.00 0.00 37.95 4.40
104 105 1.743252 GCAGAGTGTAGCCAGTGCC 60.743 63.158 0.00 0.00 38.69 5.01
105 106 1.078848 CAGAGTGTAGCCAGTGCCC 60.079 63.158 0.00 0.00 38.69 5.36
106 107 1.536418 AGAGTGTAGCCAGTGCCCA 60.536 57.895 0.00 0.00 38.69 5.36
107 108 1.376037 GAGTGTAGCCAGTGCCCAC 60.376 63.158 0.00 0.00 39.12 4.61
108 109 2.111999 GAGTGTAGCCAGTGCCCACA 62.112 60.000 0.82 0.00 40.48 4.17
109 110 1.228124 GTGTAGCCAGTGCCCACAA 60.228 57.895 0.82 0.00 38.83 3.33
110 111 1.228124 TGTAGCCAGTGCCCACAAC 60.228 57.895 0.82 0.00 38.69 3.32
111 112 1.228124 GTAGCCAGTGCCCACAACA 60.228 57.895 0.82 0.00 38.69 3.33
112 113 1.228124 TAGCCAGTGCCCACAACAC 60.228 57.895 0.82 0.00 38.69 3.32
113 114 2.690653 TAGCCAGTGCCCACAACACC 62.691 60.000 0.82 0.00 38.87 4.16
114 115 3.286751 CCAGTGCCCACAACACCG 61.287 66.667 0.82 0.00 38.87 4.94
115 116 3.964875 CAGTGCCCACAACACCGC 61.965 66.667 0.82 0.00 38.87 5.68
144 145 2.328989 CGTAGCATGGCCATTGCG 59.671 61.111 17.92 14.72 38.85 4.85
145 146 2.026590 GTAGCATGGCCATTGCGC 59.973 61.111 17.92 17.23 38.85 6.09
146 147 2.124193 TAGCATGGCCATTGCGCT 60.124 55.556 26.76 26.76 38.85 5.92
147 148 1.753848 TAGCATGGCCATTGCGCTT 60.754 52.632 28.21 16.23 38.85 4.68
148 149 1.321805 TAGCATGGCCATTGCGCTTT 61.322 50.000 28.21 15.95 38.85 3.51
149 150 2.457778 GCATGGCCATTGCGCTTTG 61.458 57.895 17.92 4.68 38.85 2.77
150 151 1.079681 CATGGCCATTGCGCTTTGT 60.080 52.632 17.92 0.00 38.85 2.83
151 152 1.079681 ATGGCCATTGCGCTTTGTG 60.080 52.632 14.09 1.77 38.85 3.33
152 153 1.818959 ATGGCCATTGCGCTTTGTGT 61.819 50.000 14.09 0.00 38.85 3.72
153 154 1.734117 GGCCATTGCGCTTTGTGTC 60.734 57.895 9.73 0.00 38.85 3.67
154 155 2.082366 GCCATTGCGCTTTGTGTCG 61.082 57.895 9.73 0.00 0.00 4.35
159 160 4.090057 GCGCTTTGTGTCGCCTCC 62.090 66.667 0.00 0.00 45.01 4.30
160 161 2.664851 CGCTTTGTGTCGCCTCCA 60.665 61.111 0.00 0.00 0.00 3.86
161 162 2.946762 GCTTTGTGTCGCCTCCAC 59.053 61.111 0.00 0.00 0.00 4.02
162 163 2.617274 GCTTTGTGTCGCCTCCACC 61.617 63.158 0.00 0.00 31.71 4.61
163 164 1.227823 CTTTGTGTCGCCTCCACCA 60.228 57.895 0.00 0.00 31.71 4.17
164 165 1.507141 CTTTGTGTCGCCTCCACCAC 61.507 60.000 0.00 0.00 31.71 4.16
165 166 2.951475 TTTGTGTCGCCTCCACCACC 62.951 60.000 0.00 0.00 31.71 4.61
166 167 3.936203 GTGTCGCCTCCACCACCA 61.936 66.667 0.00 0.00 0.00 4.17
167 168 3.625897 TGTCGCCTCCACCACCAG 61.626 66.667 0.00 0.00 0.00 4.00
168 169 3.626924 GTCGCCTCCACCACCAGT 61.627 66.667 0.00 0.00 0.00 4.00
169 170 3.625897 TCGCCTCCACCACCAGTG 61.626 66.667 0.00 0.00 46.83 3.66
172 173 4.704833 CCTCCACCACCAGTGCCG 62.705 72.222 0.00 0.00 45.83 5.69
173 174 3.625897 CTCCACCACCAGTGCCGA 61.626 66.667 0.00 0.00 45.83 5.54
174 175 3.164977 TCCACCACCAGTGCCGAA 61.165 61.111 0.00 0.00 45.83 4.30
175 176 2.669569 CCACCACCAGTGCCGAAG 60.670 66.667 0.00 0.00 45.83 3.79
195 196 3.501396 CGTAGCAGGGCCATTGTG 58.499 61.111 6.18 0.00 0.00 3.33
196 197 2.764314 CGTAGCAGGGCCATTGTGC 61.764 63.158 6.18 6.88 37.48 4.57
198 199 0.967380 GTAGCAGGGCCATTGTGCTT 60.967 55.000 21.27 7.73 45.31 3.91
199 200 0.680921 TAGCAGGGCCATTGTGCTTC 60.681 55.000 21.27 0.00 45.31 3.86
200 201 3.010413 GCAGGGCCATTGTGCTTCC 62.010 63.158 6.18 0.00 34.23 3.46
201 202 2.037847 AGGGCCATTGTGCTTCCC 59.962 61.111 6.18 0.00 37.24 3.97
202 203 3.451894 GGGCCATTGTGCTTCCCG 61.452 66.667 4.39 0.00 0.00 5.14
203 204 4.133796 GGCCATTGTGCTTCCCGC 62.134 66.667 0.00 0.00 39.77 6.13
204 205 4.133796 GCCATTGTGCTTCCCGCC 62.134 66.667 0.00 0.00 38.05 6.13
205 206 3.814268 CCATTGTGCTTCCCGCCG 61.814 66.667 0.00 0.00 38.05 6.46
206 207 4.481112 CATTGTGCTTCCCGCCGC 62.481 66.667 0.00 0.00 38.05 6.53
220 221 4.465446 CCGCCTCCTCCTCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
221 222 3.151022 CGCCTCCTCCTCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
222 223 2.766229 GCCTCCTCCTCCTCCACC 60.766 72.222 0.00 0.00 0.00 4.61
223 224 2.780693 CCTCCTCCTCCTCCACCA 59.219 66.667 0.00 0.00 0.00 4.17
224 225 1.687493 CCTCCTCCTCCTCCACCAC 60.687 68.421 0.00 0.00 0.00 4.16
225 226 1.687493 CTCCTCCTCCTCCACCACC 60.687 68.421 0.00 0.00 0.00 4.61
226 227 2.122729 CCTCCTCCTCCACCACCA 59.877 66.667 0.00 0.00 0.00 4.17
227 228 2.294078 CCTCCTCCTCCACCACCAC 61.294 68.421 0.00 0.00 0.00 4.16
228 229 2.203938 TCCTCCTCCACCACCACC 60.204 66.667 0.00 0.00 0.00 4.61
229 230 2.203998 CCTCCTCCACCACCACCT 60.204 66.667 0.00 0.00 0.00 4.00
230 231 1.847968 CCTCCTCCACCACCACCTT 60.848 63.158 0.00 0.00 0.00 3.50
231 232 0.546747 CCTCCTCCACCACCACCTTA 60.547 60.000 0.00 0.00 0.00 2.69
232 233 1.358152 CTCCTCCACCACCACCTTAA 58.642 55.000 0.00 0.00 0.00 1.85
233 234 1.702957 CTCCTCCACCACCACCTTAAA 59.297 52.381 0.00 0.00 0.00 1.52
234 235 1.702957 TCCTCCACCACCACCTTAAAG 59.297 52.381 0.00 0.00 0.00 1.85
235 236 1.702957 CCTCCACCACCACCTTAAAGA 59.297 52.381 0.00 0.00 0.00 2.52
236 237 2.107552 CCTCCACCACCACCTTAAAGAA 59.892 50.000 0.00 0.00 0.00 2.52
237 238 3.435890 CCTCCACCACCACCTTAAAGAAA 60.436 47.826 0.00 0.00 0.00 2.52
238 239 3.558033 TCCACCACCACCTTAAAGAAAC 58.442 45.455 0.00 0.00 0.00 2.78
239 240 3.053544 TCCACCACCACCTTAAAGAAACA 60.054 43.478 0.00 0.00 0.00 2.83
240 241 3.702045 CCACCACCACCTTAAAGAAACAA 59.298 43.478 0.00 0.00 0.00 2.83
241 242 4.440940 CCACCACCACCTTAAAGAAACAAC 60.441 45.833 0.00 0.00 0.00 3.32
242 243 4.401202 CACCACCACCTTAAAGAAACAACT 59.599 41.667 0.00 0.00 0.00 3.16
243 244 5.020795 ACCACCACCTTAAAGAAACAACTT 58.979 37.500 0.00 0.00 0.00 2.66
244 245 6.095720 CACCACCACCTTAAAGAAACAACTTA 59.904 38.462 0.00 0.00 0.00 2.24
245 246 6.837048 ACCACCACCTTAAAGAAACAACTTAT 59.163 34.615 0.00 0.00 0.00 1.73
246 247 8.000127 ACCACCACCTTAAAGAAACAACTTATA 59.000 33.333 0.00 0.00 0.00 0.98
247 248 8.294577 CCACCACCTTAAAGAAACAACTTATAC 58.705 37.037 0.00 0.00 0.00 1.47
248 249 8.842280 CACCACCTTAAAGAAACAACTTATACA 58.158 33.333 0.00 0.00 0.00 2.29
249 250 9.063615 ACCACCTTAAAGAAACAACTTATACAG 57.936 33.333 0.00 0.00 0.00 2.74
250 251 9.063615 CCACCTTAAAGAAACAACTTATACAGT 57.936 33.333 0.00 0.00 37.30 3.55
256 257 8.843885 AAAGAAACAACTTATACAGTACTCCC 57.156 34.615 0.00 0.00 32.94 4.30
257 258 7.793948 AGAAACAACTTATACAGTACTCCCT 57.206 36.000 0.00 0.00 32.94 4.20
258 259 7.838884 AGAAACAACTTATACAGTACTCCCTC 58.161 38.462 0.00 0.00 32.94 4.30
259 260 7.674772 AGAAACAACTTATACAGTACTCCCTCT 59.325 37.037 0.00 0.00 32.94 3.69
260 261 6.777213 ACAACTTATACAGTACTCCCTCTG 57.223 41.667 0.00 0.00 32.94 3.35
261 262 6.254522 ACAACTTATACAGTACTCCCTCTGT 58.745 40.000 0.00 0.00 45.21 3.41
262 263 7.408543 ACAACTTATACAGTACTCCCTCTGTA 58.591 38.462 7.34 7.34 46.45 2.74
263 264 7.892241 ACAACTTATACAGTACTCCCTCTGTAA 59.108 37.037 8.67 0.00 45.84 2.41
264 265 8.746530 CAACTTATACAGTACTCCCTCTGTAAA 58.253 37.037 8.67 5.15 45.84 2.01
265 266 8.291191 ACTTATACAGTACTCCCTCTGTAAAC 57.709 38.462 8.67 0.00 45.84 2.01
266 267 8.114743 ACTTATACAGTACTCCCTCTGTAAACT 58.885 37.037 8.67 0.00 45.84 2.66
267 268 9.624373 CTTATACAGTACTCCCTCTGTAAACTA 57.376 37.037 8.67 0.00 45.84 2.24
268 269 9.979897 TTATACAGTACTCCCTCTGTAAACTAA 57.020 33.333 8.67 2.43 45.84 2.24
277 278 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
278 279 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
279 280 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
280 281 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
281 282 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
329 330 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
330 331 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
331 332 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
332 333 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
333 334 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
334 335 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
335 336 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
336 337 4.907879 ATTAGTTTACGGAGGGAGTACG 57.092 45.455 0.00 0.00 0.00 3.67
337 338 2.206576 AGTTTACGGAGGGAGTACGT 57.793 50.000 0.00 0.00 43.88 3.57
338 339 1.815003 AGTTTACGGAGGGAGTACGTG 59.185 52.381 0.00 0.00 41.40 4.49
339 340 1.541588 GTTTACGGAGGGAGTACGTGT 59.458 52.381 0.00 0.00 41.40 4.49
340 341 1.909700 TTACGGAGGGAGTACGTGTT 58.090 50.000 0.00 0.00 41.40 3.32
341 342 2.779755 TACGGAGGGAGTACGTGTTA 57.220 50.000 0.00 0.00 41.40 2.41
342 343 2.134789 ACGGAGGGAGTACGTGTTAT 57.865 50.000 0.00 0.00 39.64 1.89
343 344 2.450476 ACGGAGGGAGTACGTGTTATT 58.550 47.619 0.00 0.00 39.64 1.40
344 345 2.424956 ACGGAGGGAGTACGTGTTATTC 59.575 50.000 0.00 0.00 39.64 1.75
345 346 2.424601 CGGAGGGAGTACGTGTTATTCA 59.575 50.000 0.00 0.00 0.00 2.57
346 347 3.067742 CGGAGGGAGTACGTGTTATTCAT 59.932 47.826 0.00 0.00 0.00 2.57
347 348 4.441079 CGGAGGGAGTACGTGTTATTCATT 60.441 45.833 0.00 0.00 0.00 2.57
348 349 5.048507 GGAGGGAGTACGTGTTATTCATTC 58.951 45.833 0.00 0.00 0.00 2.67
349 350 5.019785 AGGGAGTACGTGTTATTCATTCC 57.980 43.478 0.00 0.00 0.00 3.01
350 351 3.800506 GGGAGTACGTGTTATTCATTCCG 59.199 47.826 0.00 0.00 0.00 4.30
351 352 4.440525 GGGAGTACGTGTTATTCATTCCGA 60.441 45.833 0.00 0.00 0.00 4.55
352 353 5.104374 GGAGTACGTGTTATTCATTCCGAA 58.896 41.667 0.00 0.00 38.22 4.30
353 354 5.231568 GGAGTACGTGTTATTCATTCCGAAG 59.768 44.000 0.00 0.00 36.95 3.79
368 369 0.734889 CGAAGGACACATTGGATGCC 59.265 55.000 0.00 0.00 0.00 4.40
369 370 1.838112 GAAGGACACATTGGATGCCA 58.162 50.000 0.00 0.00 0.00 4.92
370 371 1.747355 GAAGGACACATTGGATGCCAG 59.253 52.381 0.00 0.00 33.81 4.85
371 372 0.994247 AGGACACATTGGATGCCAGA 59.006 50.000 0.00 0.00 33.81 3.86
372 373 1.098050 GGACACATTGGATGCCAGAC 58.902 55.000 0.00 0.00 33.81 3.51
373 374 1.614051 GGACACATTGGATGCCAGACA 60.614 52.381 0.00 0.00 33.81 3.41
374 375 2.161855 GACACATTGGATGCCAGACAA 58.838 47.619 0.00 0.00 33.81 3.18
375 376 2.163010 GACACATTGGATGCCAGACAAG 59.837 50.000 0.00 0.00 33.81 3.16
376 377 2.224843 ACACATTGGATGCCAGACAAGA 60.225 45.455 0.00 0.00 33.81 3.02
377 378 2.422479 CACATTGGATGCCAGACAAGAG 59.578 50.000 0.00 0.00 33.81 2.85
378 379 1.404391 CATTGGATGCCAGACAAGAGC 59.596 52.381 0.00 0.00 33.81 4.09
379 380 0.322816 TTGGATGCCAGACAAGAGCC 60.323 55.000 0.00 0.00 33.81 4.70
380 381 1.300963 GGATGCCAGACAAGAGCCA 59.699 57.895 0.00 0.00 0.00 4.75
381 382 0.106819 GGATGCCAGACAAGAGCCAT 60.107 55.000 0.00 0.00 0.00 4.40
382 383 1.022735 GATGCCAGACAAGAGCCATG 58.977 55.000 0.00 0.00 0.00 3.66
383 384 0.330604 ATGCCAGACAAGAGCCATGT 59.669 50.000 0.00 0.00 0.00 3.21
384 385 0.607217 TGCCAGACAAGAGCCATGTG 60.607 55.000 0.00 0.00 0.00 3.21
385 386 0.607489 GCCAGACAAGAGCCATGTGT 60.607 55.000 0.00 0.00 0.00 3.72
386 387 1.162698 CCAGACAAGAGCCATGTGTG 58.837 55.000 4.79 4.79 40.61 3.82
387 388 1.271001 CCAGACAAGAGCCATGTGTGA 60.271 52.381 11.36 0.00 42.79 3.58
388 389 1.802960 CAGACAAGAGCCATGTGTGAC 59.197 52.381 5.63 0.00 42.79 3.67
389 390 1.417517 AGACAAGAGCCATGTGTGACA 59.582 47.619 0.00 0.00 0.00 3.58
390 391 2.039480 AGACAAGAGCCATGTGTGACAT 59.961 45.455 0.00 0.00 39.91 3.06
391 392 2.417933 GACAAGAGCCATGTGTGACATC 59.582 50.000 0.00 0.00 36.53 3.06
392 393 2.039480 ACAAGAGCCATGTGTGACATCT 59.961 45.455 0.00 0.00 36.53 2.90
393 394 2.676839 CAAGAGCCATGTGTGACATCTC 59.323 50.000 0.00 0.00 36.53 2.75
394 395 1.904537 AGAGCCATGTGTGACATCTCA 59.095 47.619 0.00 0.00 36.53 3.27
395 396 2.504585 AGAGCCATGTGTGACATCTCAT 59.495 45.455 0.00 0.00 36.53 2.90
396 397 2.871022 GAGCCATGTGTGACATCTCATC 59.129 50.000 0.00 0.00 36.53 2.92
397 398 2.504585 AGCCATGTGTGACATCTCATCT 59.495 45.455 0.00 0.00 36.53 2.90
398 399 3.708121 AGCCATGTGTGACATCTCATCTA 59.292 43.478 0.00 0.00 36.53 1.98
399 400 4.056740 GCCATGTGTGACATCTCATCTAG 58.943 47.826 0.00 0.00 36.53 2.43
400 401 4.629092 CCATGTGTGACATCTCATCTAGG 58.371 47.826 0.00 0.00 36.53 3.02
401 402 4.343239 CCATGTGTGACATCTCATCTAGGA 59.657 45.833 0.00 0.00 36.53 2.94
402 403 5.509332 CCATGTGTGACATCTCATCTAGGAG 60.509 48.000 0.00 0.00 36.53 3.69
403 404 3.956848 TGTGTGACATCTCATCTAGGAGG 59.043 47.826 0.00 0.00 35.58 4.30
404 405 3.957497 GTGTGACATCTCATCTAGGAGGT 59.043 47.826 0.00 0.00 35.58 3.85
410 411 5.461032 CATCTCATCTAGGAGGTGTTACC 57.539 47.826 0.00 0.00 40.41 2.85
411 412 3.552875 TCTCATCTAGGAGGTGTTACCG 58.447 50.000 0.00 0.00 44.90 4.02
412 413 3.053842 TCTCATCTAGGAGGTGTTACCGT 60.054 47.826 0.00 0.00 44.90 4.83
413 414 3.021695 TCATCTAGGAGGTGTTACCGTG 58.978 50.000 0.00 0.00 44.90 4.94
414 415 2.592102 TCTAGGAGGTGTTACCGTGT 57.408 50.000 0.00 0.00 44.90 4.49
415 416 2.440409 TCTAGGAGGTGTTACCGTGTC 58.560 52.381 0.00 0.00 44.90 3.67
416 417 2.165167 CTAGGAGGTGTTACCGTGTCA 58.835 52.381 0.00 0.00 44.90 3.58
417 418 0.677842 AGGAGGTGTTACCGTGTCAC 59.322 55.000 0.00 0.00 44.90 3.67
419 420 3.941035 GGTGTTACCGTGTCACCG 58.059 61.111 9.94 0.00 41.37 4.94
427 428 2.048222 CGTGTCACCGGACTGCAT 60.048 61.111 9.46 0.00 44.61 3.96
428 429 2.382746 CGTGTCACCGGACTGCATG 61.383 63.158 9.46 3.10 44.61 4.06
429 430 2.358615 TGTCACCGGACTGCATGC 60.359 61.111 9.46 11.82 44.61 4.06
430 431 3.127533 GTCACCGGACTGCATGCC 61.128 66.667 16.68 0.00 40.99 4.40
431 432 3.635191 TCACCGGACTGCATGCCA 61.635 61.111 16.68 2.21 0.00 4.92
432 433 2.672651 CACCGGACTGCATGCCAA 60.673 61.111 16.68 0.00 0.00 4.52
433 434 2.360350 ACCGGACTGCATGCCAAG 60.360 61.111 16.68 9.52 0.00 3.61
434 435 3.818787 CCGGACTGCATGCCAAGC 61.819 66.667 16.68 1.63 0.00 4.01
435 436 3.057548 CGGACTGCATGCCAAGCA 61.058 61.111 16.68 0.00 44.86 3.91
440 441 3.687102 TGCATGCCAAGCAGGTGC 61.687 61.111 16.68 7.95 43.65 5.01
441 442 3.687102 GCATGCCAAGCAGGTGCA 61.687 61.111 6.36 0.00 42.10 4.57
442 443 3.052954 CATGCCAAGCAGGTGCAA 58.947 55.556 4.48 0.00 43.65 4.08
443 444 1.080093 CATGCCAAGCAGGTGCAAG 60.080 57.895 4.48 0.00 43.65 4.01
444 445 1.532316 ATGCCAAGCAGGTGCAAGT 60.532 52.632 4.48 0.00 43.65 3.16
445 446 1.530013 ATGCCAAGCAGGTGCAAGTC 61.530 55.000 4.48 0.00 43.65 3.01
446 447 2.195567 GCCAAGCAGGTGCAAGTCA 61.196 57.895 4.48 0.00 45.16 3.41
447 448 1.737355 GCCAAGCAGGTGCAAGTCAA 61.737 55.000 4.48 0.00 45.16 3.18
448 449 0.313043 CCAAGCAGGTGCAAGTCAAG 59.687 55.000 4.48 0.00 45.16 3.02
449 450 1.027357 CAAGCAGGTGCAAGTCAAGT 58.973 50.000 4.48 0.00 45.16 3.16
450 451 1.002033 CAAGCAGGTGCAAGTCAAGTC 60.002 52.381 4.48 0.00 45.16 3.01
451 452 0.181114 AGCAGGTGCAAGTCAAGTCA 59.819 50.000 4.48 0.00 45.16 3.41
452 453 1.024271 GCAGGTGCAAGTCAAGTCAA 58.976 50.000 0.00 0.00 41.59 3.18
453 454 1.268743 GCAGGTGCAAGTCAAGTCAAC 60.269 52.381 0.00 0.00 41.59 3.18
454 455 1.334869 CAGGTGCAAGTCAAGTCAACC 59.665 52.381 0.00 0.00 0.00 3.77
455 456 1.064758 AGGTGCAAGTCAAGTCAACCA 60.065 47.619 0.00 0.00 0.00 3.67
456 457 1.065551 GGTGCAAGTCAAGTCAACCAC 59.934 52.381 0.00 0.00 0.00 4.16
457 458 1.065551 GTGCAAGTCAAGTCAACCACC 59.934 52.381 0.00 0.00 0.00 4.61
458 459 0.668535 GCAAGTCAAGTCAACCACCC 59.331 55.000 0.00 0.00 0.00 4.61
459 460 2.021723 GCAAGTCAAGTCAACCACCCA 61.022 52.381 0.00 0.00 0.00 4.51
460 461 2.374184 CAAGTCAAGTCAACCACCCAA 58.626 47.619 0.00 0.00 0.00 4.12
461 462 2.348411 AGTCAAGTCAACCACCCAAG 57.652 50.000 0.00 0.00 0.00 3.61
462 463 1.564348 AGTCAAGTCAACCACCCAAGT 59.436 47.619 0.00 0.00 0.00 3.16
463 464 2.025321 AGTCAAGTCAACCACCCAAGTT 60.025 45.455 0.00 0.00 0.00 2.66
464 465 2.758423 GTCAAGTCAACCACCCAAGTTT 59.242 45.455 0.00 0.00 0.00 2.66
465 466 3.194755 GTCAAGTCAACCACCCAAGTTTT 59.805 43.478 0.00 0.00 0.00 2.43
466 467 3.445805 TCAAGTCAACCACCCAAGTTTTC 59.554 43.478 0.00 0.00 0.00 2.29
467 468 3.094484 AGTCAACCACCCAAGTTTTCA 57.906 42.857 0.00 0.00 0.00 2.69
468 469 2.758423 AGTCAACCACCCAAGTTTTCAC 59.242 45.455 0.00 0.00 0.00 3.18
469 470 2.758423 GTCAACCACCCAAGTTTTCACT 59.242 45.455 0.00 0.00 33.11 3.41
470 471 3.949113 GTCAACCACCCAAGTTTTCACTA 59.051 43.478 0.00 0.00 30.68 2.74
471 472 4.036380 GTCAACCACCCAAGTTTTCACTAG 59.964 45.833 0.00 0.00 30.68 2.57
472 473 2.583143 ACCACCCAAGTTTTCACTAGC 58.417 47.619 0.00 0.00 30.68 3.42
473 474 2.174854 ACCACCCAAGTTTTCACTAGCT 59.825 45.455 0.00 0.00 30.68 3.32
474 475 3.393278 ACCACCCAAGTTTTCACTAGCTA 59.607 43.478 0.00 0.00 30.68 3.32
475 476 4.003648 CCACCCAAGTTTTCACTAGCTAG 58.996 47.826 19.44 19.44 30.68 3.42
476 477 4.505039 CCACCCAAGTTTTCACTAGCTAGT 60.505 45.833 20.95 20.95 36.90 2.57
477 478 5.063880 CACCCAAGTTTTCACTAGCTAGTT 58.936 41.667 23.94 5.65 33.46 2.24
478 479 5.531287 CACCCAAGTTTTCACTAGCTAGTTT 59.469 40.000 23.94 11.70 33.46 2.66
479 480 5.763698 ACCCAAGTTTTCACTAGCTAGTTTC 59.236 40.000 23.94 11.87 33.46 2.78
480 481 5.181433 CCCAAGTTTTCACTAGCTAGTTTCC 59.819 44.000 23.94 10.10 33.46 3.13
481 482 5.763204 CCAAGTTTTCACTAGCTAGTTTCCA 59.237 40.000 23.94 6.11 33.46 3.53
482 483 6.262273 CCAAGTTTTCACTAGCTAGTTTCCAA 59.738 38.462 23.94 11.33 33.46 3.53
483 484 7.201785 CCAAGTTTTCACTAGCTAGTTTCCAAA 60.202 37.037 23.94 15.95 33.46 3.28
484 485 7.260558 AGTTTTCACTAGCTAGTTTCCAAAC 57.739 36.000 23.94 23.94 39.17 2.93
485 486 6.826741 AGTTTTCACTAGCTAGTTTCCAAACA 59.173 34.615 28.16 12.80 41.30 2.83
486 487 7.338449 AGTTTTCACTAGCTAGTTTCCAAACAA 59.662 33.333 28.16 13.85 41.30 2.83
487 488 6.861065 TTCACTAGCTAGTTTCCAAACAAG 57.139 37.500 23.94 8.74 41.30 3.16
488 489 5.925509 TCACTAGCTAGTTTCCAAACAAGT 58.074 37.500 23.94 0.00 41.30 3.16
489 490 6.354130 TCACTAGCTAGTTTCCAAACAAGTT 58.646 36.000 23.94 0.00 41.30 2.66
490 491 6.260050 TCACTAGCTAGTTTCCAAACAAGTTG 59.740 38.462 23.94 7.68 41.30 3.16
491 492 4.307443 AGCTAGTTTCCAAACAAGTTGC 57.693 40.909 1.81 2.12 41.30 4.17
492 493 3.042887 GCTAGTTTCCAAACAAGTTGCG 58.957 45.455 1.81 0.00 41.30 4.85
493 494 2.577449 AGTTTCCAAACAAGTTGCGG 57.423 45.000 1.81 1.37 41.30 5.69
494 495 1.136110 AGTTTCCAAACAAGTTGCGGG 59.864 47.619 1.81 2.21 41.30 6.13
495 496 1.134936 GTTTCCAAACAAGTTGCGGGT 60.135 47.619 1.81 0.00 38.74 5.28
496 497 0.741915 TTCCAAACAAGTTGCGGGTC 59.258 50.000 1.81 0.00 35.74 4.46
497 498 0.394488 TCCAAACAAGTTGCGGGTCA 60.394 50.000 1.81 0.00 35.74 4.02
498 499 0.457851 CCAAACAAGTTGCGGGTCAA 59.542 50.000 1.81 0.00 35.74 3.18
511 512 4.947147 GTCAACGGCCAGCCACCA 62.947 66.667 9.78 0.00 35.37 4.17
512 513 3.965258 TCAACGGCCAGCCACCAT 61.965 61.111 9.78 0.00 35.37 3.55
513 514 2.990967 CAACGGCCAGCCACCATT 60.991 61.111 9.78 0.00 35.37 3.16
514 515 2.203625 AACGGCCAGCCACCATTT 60.204 55.556 9.78 0.00 35.37 2.32
515 516 1.836604 AACGGCCAGCCACCATTTT 60.837 52.632 9.78 0.00 35.37 1.82
516 517 1.815817 AACGGCCAGCCACCATTTTC 61.816 55.000 9.78 0.00 35.37 2.29
517 518 1.978617 CGGCCAGCCACCATTTTCT 60.979 57.895 9.78 0.00 35.37 2.52
518 519 1.535204 CGGCCAGCCACCATTTTCTT 61.535 55.000 9.78 0.00 35.37 2.52
519 520 0.686789 GGCCAGCCACCATTTTCTTT 59.313 50.000 3.12 0.00 35.81 2.52
520 521 1.072173 GGCCAGCCACCATTTTCTTTT 59.928 47.619 3.12 0.00 35.81 2.27
521 522 2.416747 GCCAGCCACCATTTTCTTTTC 58.583 47.619 0.00 0.00 0.00 2.29
522 523 2.224257 GCCAGCCACCATTTTCTTTTCA 60.224 45.455 0.00 0.00 0.00 2.69
523 524 3.392882 CCAGCCACCATTTTCTTTTCAC 58.607 45.455 0.00 0.00 0.00 3.18
524 525 3.070015 CCAGCCACCATTTTCTTTTCACT 59.930 43.478 0.00 0.00 0.00 3.41
525 526 4.280677 CCAGCCACCATTTTCTTTTCACTA 59.719 41.667 0.00 0.00 0.00 2.74
526 527 5.047092 CCAGCCACCATTTTCTTTTCACTAT 60.047 40.000 0.00 0.00 0.00 2.12
527 528 6.152661 CCAGCCACCATTTTCTTTTCACTATA 59.847 38.462 0.00 0.00 0.00 1.31
528 529 7.309744 CCAGCCACCATTTTCTTTTCACTATAA 60.310 37.037 0.00 0.00 0.00 0.98
529 530 7.756722 CAGCCACCATTTTCTTTTCACTATAAG 59.243 37.037 0.00 0.00 0.00 1.73
530 531 6.531594 GCCACCATTTTCTTTTCACTATAAGC 59.468 38.462 0.00 0.00 0.00 3.09
531 532 7.577616 GCCACCATTTTCTTTTCACTATAAGCT 60.578 37.037 0.00 0.00 0.00 3.74
532 533 7.756722 CCACCATTTTCTTTTCACTATAAGCTG 59.243 37.037 0.00 0.00 0.00 4.24
533 534 8.514594 CACCATTTTCTTTTCACTATAAGCTGA 58.485 33.333 0.00 0.00 0.00 4.26
534 535 8.734386 ACCATTTTCTTTTCACTATAAGCTGAG 58.266 33.333 0.00 0.00 0.00 3.35
535 536 7.699812 CCATTTTCTTTTCACTATAAGCTGAGC 59.300 37.037 0.00 0.00 0.00 4.26
536 537 7.986085 TTTTCTTTTCACTATAAGCTGAGCT 57.014 32.000 0.00 0.00 42.56 4.09
537 538 7.602517 TTTCTTTTCACTATAAGCTGAGCTC 57.397 36.000 7.72 6.82 38.25 4.09
538 539 6.286240 TCTTTTCACTATAAGCTGAGCTCA 57.714 37.500 17.19 17.19 38.25 4.26
539 540 6.102663 TCTTTTCACTATAAGCTGAGCTCAC 58.897 40.000 13.74 10.17 38.25 3.51
540 541 3.699779 TCACTATAAGCTGAGCTCACG 57.300 47.619 13.74 10.43 38.25 4.35
541 542 3.279434 TCACTATAAGCTGAGCTCACGA 58.721 45.455 13.74 4.61 38.25 4.35
542 543 3.313803 TCACTATAAGCTGAGCTCACGAG 59.686 47.826 13.74 4.50 38.25 4.18
543 544 3.313803 CACTATAAGCTGAGCTCACGAGA 59.686 47.826 13.74 0.00 38.25 4.04
544 545 4.023279 CACTATAAGCTGAGCTCACGAGAT 60.023 45.833 13.74 6.97 38.25 2.75
545 546 5.180304 CACTATAAGCTGAGCTCACGAGATA 59.820 44.000 13.74 7.75 38.25 1.98
546 547 5.943416 ACTATAAGCTGAGCTCACGAGATAT 59.057 40.000 13.74 9.61 38.25 1.63
547 548 7.065204 CACTATAAGCTGAGCTCACGAGATATA 59.935 40.741 13.74 10.19 38.25 0.86
548 549 7.773224 ACTATAAGCTGAGCTCACGAGATATAT 59.227 37.037 13.74 0.90 38.25 0.86
549 550 9.267084 CTATAAGCTGAGCTCACGAGATATATA 57.733 37.037 13.74 2.12 38.25 0.86
550 551 8.690203 ATAAGCTGAGCTCACGAGATATATAT 57.310 34.615 13.74 0.00 38.25 0.86
551 552 6.618287 AGCTGAGCTCACGAGATATATATC 57.382 41.667 13.74 13.95 30.62 1.63
552 553 5.530915 AGCTGAGCTCACGAGATATATATCC 59.469 44.000 13.74 9.37 30.62 2.59
553 554 5.530915 GCTGAGCTCACGAGATATATATCCT 59.469 44.000 13.74 7.03 33.17 3.24
554 555 6.039270 GCTGAGCTCACGAGATATATATCCTT 59.961 42.308 13.74 1.98 33.17 3.36
555 556 7.326968 TGAGCTCACGAGATATATATCCTTG 57.673 40.000 13.74 12.43 33.17 3.61
556 557 7.112779 TGAGCTCACGAGATATATATCCTTGA 58.887 38.462 13.74 15.29 33.17 3.02
557 558 7.611855 TGAGCTCACGAGATATATATCCTTGAA 59.388 37.037 13.74 2.73 33.17 2.69
558 559 8.354711 AGCTCACGAGATATATATCCTTGAAA 57.645 34.615 17.44 1.37 33.17 2.69
559 560 8.807118 AGCTCACGAGATATATATCCTTGAAAA 58.193 33.333 17.44 0.00 33.17 2.29
560 561 8.865001 GCTCACGAGATATATATCCTTGAAAAC 58.135 37.037 17.44 7.73 33.17 2.43
561 562 9.914131 CTCACGAGATATATATCCTTGAAAACA 57.086 33.333 17.44 0.00 33.17 2.83
564 565 9.209175 ACGAGATATATATCCTTGAAAACAAGC 57.791 33.333 17.44 0.00 33.17 4.01
565 566 9.208022 CGAGATATATATCCTTGAAAACAAGCA 57.792 33.333 17.44 0.00 33.17 3.91
575 576 7.145323 TCCTTGAAAACAAGCATTTAGTTAGC 58.855 34.615 0.00 0.00 0.00 3.09
1017 1019 2.486472 GGATGCCATCCTGGTATGAG 57.514 55.000 16.71 1.30 43.07 2.90
1108 1110 3.836562 GTGGAACAGAGTTAGGGTTAGGA 59.163 47.826 0.00 0.00 41.80 2.94
1126 1178 7.201911 GGGTTAGGATTAGTTCATCCAAATTGG 60.202 40.741 5.48 5.48 44.93 3.16
2165 2243 5.525378 GCTGAGAAGAAGAAACAACTTGAGA 59.475 40.000 0.00 0.00 0.00 3.27
2822 2901 7.671398 TGCCATTCATAGTCTGACATAGATAGA 59.329 37.037 10.88 0.00 37.83 1.98
2908 2987 3.963428 ACCTAGGAACTTACTGCACTG 57.037 47.619 17.98 0.00 41.75 3.66
3384 3469 2.915659 AGGACGGCTTCGGTGACA 60.916 61.111 0.00 0.00 38.38 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.557054 GCTCCAACACACCAGACATCTAA 60.557 47.826 0.00 0.00 0.00 2.10
1 2 2.028112 GCTCCAACACACCAGACATCTA 60.028 50.000 0.00 0.00 0.00 1.98
2 3 1.271054 GCTCCAACACACCAGACATCT 60.271 52.381 0.00 0.00 0.00 2.90
3 4 1.160137 GCTCCAACACACCAGACATC 58.840 55.000 0.00 0.00 0.00 3.06
5 6 0.179048 CTGCTCCAACACACCAGACA 60.179 55.000 0.00 0.00 0.00 3.41
6 7 0.886490 CCTGCTCCAACACACCAGAC 60.886 60.000 0.00 0.00 0.00 3.51
7 8 1.451504 CCTGCTCCAACACACCAGA 59.548 57.895 0.00 0.00 0.00 3.86
8 9 2.263741 GCCTGCTCCAACACACCAG 61.264 63.158 0.00 0.00 0.00 4.00
9 10 2.203337 GCCTGCTCCAACACACCA 60.203 61.111 0.00 0.00 0.00 4.17
10 11 3.357079 CGCCTGCTCCAACACACC 61.357 66.667 0.00 0.00 0.00 4.16
11 12 4.030452 GCGCCTGCTCCAACACAC 62.030 66.667 0.00 0.00 38.39 3.82
12 13 4.560743 TGCGCCTGCTCCAACACA 62.561 61.111 4.18 0.00 43.34 3.72
13 14 3.730761 CTGCGCCTGCTCCAACAC 61.731 66.667 4.18 0.00 43.34 3.32
26 27 2.962827 CTCTTGTGTGCTGGCTGCG 61.963 63.158 11.85 0.00 46.63 5.18
27 28 2.952245 CTCTTGTGTGCTGGCTGC 59.048 61.111 9.67 9.67 43.25 5.25
28 29 2.952245 GCTCTTGTGTGCTGGCTG 59.048 61.111 0.00 0.00 0.00 4.85
29 30 2.667536 CGCTCTTGTGTGCTGGCT 60.668 61.111 0.00 0.00 0.00 4.75
30 31 3.730761 CCGCTCTTGTGTGCTGGC 61.731 66.667 0.00 0.00 0.00 4.85
31 32 0.957395 ATTCCGCTCTTGTGTGCTGG 60.957 55.000 0.00 0.00 0.00 4.85
32 33 1.394917 GTATTCCGCTCTTGTGTGCTG 59.605 52.381 0.00 0.00 0.00 4.41
33 34 1.001974 TGTATTCCGCTCTTGTGTGCT 59.998 47.619 0.00 0.00 0.00 4.40
34 35 1.438651 TGTATTCCGCTCTTGTGTGC 58.561 50.000 0.00 0.00 0.00 4.57
35 36 2.159627 GGTTGTATTCCGCTCTTGTGTG 59.840 50.000 0.00 0.00 0.00 3.82
36 37 2.224426 TGGTTGTATTCCGCTCTTGTGT 60.224 45.455 0.00 0.00 0.00 3.72
37 38 2.422597 TGGTTGTATTCCGCTCTTGTG 58.577 47.619 0.00 0.00 0.00 3.33
38 39 2.851263 TGGTTGTATTCCGCTCTTGT 57.149 45.000 0.00 0.00 0.00 3.16
39 40 3.440173 ACAATGGTTGTATTCCGCTCTTG 59.560 43.478 0.00 0.00 43.27 3.02
40 41 3.440173 CACAATGGTTGTATTCCGCTCTT 59.560 43.478 0.00 0.00 43.23 2.85
41 42 3.009723 CACAATGGTTGTATTCCGCTCT 58.990 45.455 0.00 0.00 43.23 4.09
42 43 2.477863 GCACAATGGTTGTATTCCGCTC 60.478 50.000 0.00 0.00 43.23 5.03
43 44 1.472480 GCACAATGGTTGTATTCCGCT 59.528 47.619 0.00 0.00 43.23 5.52
44 45 1.472480 AGCACAATGGTTGTATTCCGC 59.528 47.619 0.00 0.00 43.23 5.54
45 46 2.746904 TGAGCACAATGGTTGTATTCCG 59.253 45.455 0.00 0.00 43.23 4.30
46 47 4.496341 CGATGAGCACAATGGTTGTATTCC 60.496 45.833 0.00 0.00 43.23 3.01
47 48 4.591202 CGATGAGCACAATGGTTGTATTC 58.409 43.478 0.00 0.00 43.23 1.75
48 49 4.621068 CGATGAGCACAATGGTTGTATT 57.379 40.909 0.00 0.00 43.23 1.89
69 70 3.123620 CTCTTCTGCGCTGGTGGC 61.124 66.667 14.70 0.00 37.64 5.01
70 71 3.123620 GCTCTTCTGCGCTGGTGG 61.124 66.667 14.70 5.26 0.00 4.61
71 72 2.357881 TGCTCTTCTGCGCTGGTG 60.358 61.111 14.70 7.66 35.36 4.17
72 73 2.047465 CTGCTCTTCTGCGCTGGT 60.047 61.111 14.70 0.00 35.36 4.00
73 74 1.810441 CTCTGCTCTTCTGCGCTGG 60.810 63.158 14.70 4.50 35.36 4.85
74 75 1.079956 ACTCTGCTCTTCTGCGCTG 60.080 57.895 9.73 8.88 35.36 5.18
75 76 1.079956 CACTCTGCTCTTCTGCGCT 60.080 57.895 9.73 0.00 35.36 5.92
76 77 0.109086 TACACTCTGCTCTTCTGCGC 60.109 55.000 0.00 0.00 35.36 6.09
77 78 1.906757 CTACACTCTGCTCTTCTGCG 58.093 55.000 0.00 0.00 35.36 5.18
78 79 1.639280 GCTACACTCTGCTCTTCTGC 58.361 55.000 0.00 0.00 0.00 4.26
79 80 1.547820 TGGCTACACTCTGCTCTTCTG 59.452 52.381 0.00 0.00 0.00 3.02
80 81 1.824230 CTGGCTACACTCTGCTCTTCT 59.176 52.381 0.00 0.00 0.00 2.85
81 82 1.548269 ACTGGCTACACTCTGCTCTTC 59.452 52.381 0.00 0.00 0.00 2.87
82 83 1.274728 CACTGGCTACACTCTGCTCTT 59.725 52.381 0.00 0.00 0.00 2.85
83 84 0.894141 CACTGGCTACACTCTGCTCT 59.106 55.000 0.00 0.00 0.00 4.09
84 85 0.739112 GCACTGGCTACACTCTGCTC 60.739 60.000 0.00 0.00 36.96 4.26
85 86 1.294780 GCACTGGCTACACTCTGCT 59.705 57.895 0.00 0.00 36.96 4.24
86 87 1.743252 GGCACTGGCTACACTCTGC 60.743 63.158 0.00 0.00 40.87 4.26
87 88 1.078848 GGGCACTGGCTACACTCTG 60.079 63.158 2.14 0.00 40.87 3.35
88 89 1.536418 TGGGCACTGGCTACACTCT 60.536 57.895 2.14 0.00 40.87 3.24
89 90 1.376037 GTGGGCACTGGCTACACTC 60.376 63.158 13.45 0.00 41.40 3.51
90 91 2.146724 TGTGGGCACTGGCTACACT 61.147 57.895 16.58 0.00 43.62 3.55
91 92 2.429930 TGTGGGCACTGGCTACAC 59.570 61.111 16.58 10.58 43.62 2.90
92 93 1.228124 GTTGTGGGCACTGGCTACA 60.228 57.895 16.58 16.58 46.33 2.74
93 94 1.228124 TGTTGTGGGCACTGGCTAC 60.228 57.895 11.69 11.69 39.80 3.58
94 95 1.228124 GTGTTGTGGGCACTGGCTA 60.228 57.895 2.14 0.00 40.87 3.93
95 96 2.519302 GTGTTGTGGGCACTGGCT 60.519 61.111 2.14 0.00 40.87 4.75
96 97 3.605664 GGTGTTGTGGGCACTGGC 61.606 66.667 0.00 0.00 37.07 4.85
97 98 3.286751 CGGTGTTGTGGGCACTGG 61.287 66.667 0.00 0.00 39.01 4.00
98 99 3.964875 GCGGTGTTGTGGGCACTG 61.965 66.667 0.00 0.00 43.87 3.66
120 121 2.100991 GCCATGCTACGCTTGTGC 59.899 61.111 0.00 0.00 32.83 4.57
121 122 1.378882 ATGGCCATGCTACGCTTGTG 61.379 55.000 20.04 0.00 32.83 3.33
122 123 0.680921 AATGGCCATGCTACGCTTGT 60.681 50.000 21.63 0.00 32.83 3.16
123 124 0.248743 CAATGGCCATGCTACGCTTG 60.249 55.000 21.63 8.13 34.20 4.01
124 125 2.008268 GCAATGGCCATGCTACGCTT 62.008 55.000 21.63 0.00 40.64 4.68
125 126 2.484062 GCAATGGCCATGCTACGCT 61.484 57.895 21.63 0.00 40.64 5.07
126 127 2.026590 GCAATGGCCATGCTACGC 59.973 61.111 21.63 13.36 40.64 4.42
127 128 2.328989 CGCAATGGCCATGCTACG 59.671 61.111 26.83 20.70 41.64 3.51
128 129 2.008268 AAGCGCAATGGCCATGCTAC 62.008 55.000 24.80 19.57 41.64 3.58
129 130 1.321805 AAAGCGCAATGGCCATGCTA 61.322 50.000 24.80 0.00 41.64 3.49
130 131 2.652095 AAAGCGCAATGGCCATGCT 61.652 52.632 26.83 24.05 41.64 3.79
131 132 2.125431 AAAGCGCAATGGCCATGC 60.125 55.556 21.63 22.34 40.41 4.06
132 133 1.079681 ACAAAGCGCAATGGCCATG 60.080 52.632 21.63 14.56 36.38 3.66
133 134 1.079681 CACAAAGCGCAATGGCCAT 60.080 52.632 14.09 14.09 36.38 4.40
134 135 2.339348 CACAAAGCGCAATGGCCA 59.661 55.556 8.56 8.56 36.38 5.36
135 136 1.734117 GACACAAAGCGCAATGGCC 60.734 57.895 11.47 0.00 36.38 5.36
136 137 2.082366 CGACACAAAGCGCAATGGC 61.082 57.895 11.47 2.67 0.00 4.40
137 138 4.135570 CGACACAAAGCGCAATGG 57.864 55.556 11.47 0.00 0.00 3.16
143 144 2.664851 TGGAGGCGACACAAAGCG 60.665 61.111 0.00 0.00 0.00 4.68
144 145 2.617274 GGTGGAGGCGACACAAAGC 61.617 63.158 14.73 0.00 40.54 3.51
145 146 1.227823 TGGTGGAGGCGACACAAAG 60.228 57.895 14.73 0.00 40.54 2.77
146 147 1.525077 GTGGTGGAGGCGACACAAA 60.525 57.895 14.73 2.12 40.54 2.83
147 148 2.110213 GTGGTGGAGGCGACACAA 59.890 61.111 14.73 2.69 40.54 3.33
148 149 3.936203 GGTGGTGGAGGCGACACA 61.936 66.667 14.73 0.00 40.54 3.72
149 150 3.883744 CTGGTGGTGGAGGCGACAC 62.884 68.421 0.00 6.12 38.10 3.67
150 151 3.625897 CTGGTGGTGGAGGCGACA 61.626 66.667 0.00 0.00 0.00 4.35
151 152 3.626924 ACTGGTGGTGGAGGCGAC 61.627 66.667 0.00 0.00 0.00 5.19
152 153 3.625897 CACTGGTGGTGGAGGCGA 61.626 66.667 0.00 0.00 41.90 5.54
155 156 4.704833 CGGCACTGGTGGTGGAGG 62.705 72.222 2.84 0.00 45.44 4.30
156 157 3.177194 TTCGGCACTGGTGGTGGAG 62.177 63.158 2.84 0.00 45.44 3.86
157 158 3.164977 TTCGGCACTGGTGGTGGA 61.165 61.111 2.84 0.00 45.44 4.02
158 159 2.669569 CTTCGGCACTGGTGGTGG 60.670 66.667 2.84 0.00 45.44 4.61
160 161 3.953775 CCCTTCGGCACTGGTGGT 61.954 66.667 2.84 0.00 0.00 4.16
170 171 4.530857 CCCTGCTACGCCCTTCGG 62.531 72.222 0.00 0.00 43.86 4.30
172 173 4.858680 GGCCCTGCTACGCCCTTC 62.859 72.222 0.00 0.00 39.39 3.46
175 176 4.506255 AATGGCCCTGCTACGCCC 62.506 66.667 0.00 0.00 45.07 6.13
176 177 3.211963 CAATGGCCCTGCTACGCC 61.212 66.667 0.00 2.01 45.92 5.68
177 178 2.438434 ACAATGGCCCTGCTACGC 60.438 61.111 0.00 0.00 0.00 4.42
178 179 2.764314 GCACAATGGCCCTGCTACG 61.764 63.158 0.00 0.00 0.00 3.51
179 180 0.967380 AAGCACAATGGCCCTGCTAC 60.967 55.000 13.08 0.00 40.43 3.58
180 181 0.680921 GAAGCACAATGGCCCTGCTA 60.681 55.000 13.08 0.00 40.43 3.49
181 182 1.980772 GAAGCACAATGGCCCTGCT 60.981 57.895 0.00 4.20 43.21 4.24
182 183 2.575461 GAAGCACAATGGCCCTGC 59.425 61.111 0.00 1.48 0.00 4.85
183 184 2.353610 GGGAAGCACAATGGCCCTG 61.354 63.158 0.00 0.00 35.86 4.45
184 185 2.037847 GGGAAGCACAATGGCCCT 59.962 61.111 0.00 0.00 35.86 5.19
185 186 3.451894 CGGGAAGCACAATGGCCC 61.452 66.667 0.00 0.00 35.40 5.80
203 204 4.465446 TGGAGGAGGAGGAGGCGG 62.465 72.222 0.00 0.00 0.00 6.13
204 205 3.151022 GTGGAGGAGGAGGAGGCG 61.151 72.222 0.00 0.00 0.00 5.52
205 206 2.766229 GGTGGAGGAGGAGGAGGC 60.766 72.222 0.00 0.00 0.00 4.70
206 207 1.687493 GTGGTGGAGGAGGAGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
207 208 1.687493 GGTGGTGGAGGAGGAGGAG 60.687 68.421 0.00 0.00 0.00 3.69
208 209 2.450243 GGTGGTGGAGGAGGAGGA 59.550 66.667 0.00 0.00 0.00 3.71
209 210 2.122729 TGGTGGTGGAGGAGGAGG 59.877 66.667 0.00 0.00 0.00 4.30
210 211 2.294078 GGTGGTGGTGGAGGAGGAG 61.294 68.421 0.00 0.00 0.00 3.69
211 212 2.203938 GGTGGTGGTGGAGGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
212 213 0.546747 TAAGGTGGTGGTGGAGGAGG 60.547 60.000 0.00 0.00 0.00 4.30
213 214 1.358152 TTAAGGTGGTGGTGGAGGAG 58.642 55.000 0.00 0.00 0.00 3.69
214 215 1.702957 CTTTAAGGTGGTGGTGGAGGA 59.297 52.381 0.00 0.00 0.00 3.71
215 216 1.702957 TCTTTAAGGTGGTGGTGGAGG 59.297 52.381 0.00 0.00 0.00 4.30
216 217 3.502123 TTCTTTAAGGTGGTGGTGGAG 57.498 47.619 0.00 0.00 0.00 3.86
217 218 3.053544 TGTTTCTTTAAGGTGGTGGTGGA 60.054 43.478 0.00 0.00 0.00 4.02
218 219 3.292460 TGTTTCTTTAAGGTGGTGGTGG 58.708 45.455 0.00 0.00 0.00 4.61
219 220 4.401202 AGTTGTTTCTTTAAGGTGGTGGTG 59.599 41.667 0.00 0.00 0.00 4.17
220 221 4.606210 AGTTGTTTCTTTAAGGTGGTGGT 58.394 39.130 0.00 0.00 0.00 4.16
221 222 5.592104 AAGTTGTTTCTTTAAGGTGGTGG 57.408 39.130 0.00 0.00 0.00 4.61
222 223 8.842280 TGTATAAGTTGTTTCTTTAAGGTGGTG 58.158 33.333 0.00 0.00 0.00 4.17
223 224 8.983702 TGTATAAGTTGTTTCTTTAAGGTGGT 57.016 30.769 0.00 0.00 0.00 4.16
224 225 9.063615 ACTGTATAAGTTGTTTCTTTAAGGTGG 57.936 33.333 0.00 0.00 34.57 4.61
230 231 9.933723 GGGAGTACTGTATAAGTTGTTTCTTTA 57.066 33.333 0.00 0.00 40.56 1.85
231 232 8.657712 AGGGAGTACTGTATAAGTTGTTTCTTT 58.342 33.333 0.00 0.00 40.56 2.52
232 233 8.203681 AGGGAGTACTGTATAAGTTGTTTCTT 57.796 34.615 0.00 0.00 40.56 2.52
233 234 7.674772 AGAGGGAGTACTGTATAAGTTGTTTCT 59.325 37.037 0.00 0.00 40.56 2.52
234 235 7.760340 CAGAGGGAGTACTGTATAAGTTGTTTC 59.240 40.741 0.00 0.00 40.56 2.78
235 236 7.234988 ACAGAGGGAGTACTGTATAAGTTGTTT 59.765 37.037 0.00 0.00 44.06 2.83
236 237 6.724905 ACAGAGGGAGTACTGTATAAGTTGTT 59.275 38.462 0.00 0.00 44.06 2.83
237 238 6.254522 ACAGAGGGAGTACTGTATAAGTTGT 58.745 40.000 0.00 0.00 44.06 3.32
238 239 6.777213 ACAGAGGGAGTACTGTATAAGTTG 57.223 41.667 0.00 0.00 44.06 3.16
239 240 8.747471 GTTTACAGAGGGAGTACTGTATAAGTT 58.253 37.037 0.00 0.00 45.05 2.66
240 241 8.114743 AGTTTACAGAGGGAGTACTGTATAAGT 58.885 37.037 0.00 0.00 45.05 2.24
241 242 8.522542 AGTTTACAGAGGGAGTACTGTATAAG 57.477 38.462 0.00 0.00 45.05 1.73
242 243 9.979897 TTAGTTTACAGAGGGAGTACTGTATAA 57.020 33.333 0.00 0.00 45.05 0.98
251 252 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
252 253 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
253 254 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
254 255 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
255 256 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
303 304 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
304 305 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
305 306 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
306 307 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
307 308 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
308 309 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
309 310 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
310 311 8.233190 CGTACTCCCTCCGTAAACTAATATAAG 58.767 40.741 0.00 0.00 0.00 1.73
311 312 7.719633 ACGTACTCCCTCCGTAAACTAATATAA 59.280 37.037 0.00 0.00 32.22 0.98
312 313 7.173218 CACGTACTCCCTCCGTAAACTAATATA 59.827 40.741 0.00 0.00 32.81 0.86
313 314 6.016777 CACGTACTCCCTCCGTAAACTAATAT 60.017 42.308 0.00 0.00 32.81 1.28
314 315 5.296780 CACGTACTCCCTCCGTAAACTAATA 59.703 44.000 0.00 0.00 32.81 0.98
315 316 4.096984 CACGTACTCCCTCCGTAAACTAAT 59.903 45.833 0.00 0.00 32.81 1.73
316 317 3.440173 CACGTACTCCCTCCGTAAACTAA 59.560 47.826 0.00 0.00 32.81 2.24
317 318 3.009723 CACGTACTCCCTCCGTAAACTA 58.990 50.000 0.00 0.00 32.81 2.24
318 319 1.815003 CACGTACTCCCTCCGTAAACT 59.185 52.381 0.00 0.00 32.81 2.66
319 320 1.541588 ACACGTACTCCCTCCGTAAAC 59.458 52.381 0.00 0.00 32.81 2.01
320 321 1.909700 ACACGTACTCCCTCCGTAAA 58.090 50.000 0.00 0.00 32.81 2.01
321 322 1.909700 AACACGTACTCCCTCCGTAA 58.090 50.000 0.00 0.00 32.81 3.18
322 323 2.779755 TAACACGTACTCCCTCCGTA 57.220 50.000 0.00 0.00 32.81 4.02
323 324 2.134789 ATAACACGTACTCCCTCCGT 57.865 50.000 0.00 0.00 34.71 4.69
324 325 2.424601 TGAATAACACGTACTCCCTCCG 59.575 50.000 0.00 0.00 0.00 4.63
325 326 4.667519 ATGAATAACACGTACTCCCTCC 57.332 45.455 0.00 0.00 0.00 4.30
326 327 5.048507 GGAATGAATAACACGTACTCCCTC 58.951 45.833 0.00 0.00 0.00 4.30
327 328 4.441079 CGGAATGAATAACACGTACTCCCT 60.441 45.833 0.00 0.00 0.00 4.20
328 329 3.800506 CGGAATGAATAACACGTACTCCC 59.199 47.826 0.00 0.00 0.00 4.30
329 330 4.675510 TCGGAATGAATAACACGTACTCC 58.324 43.478 0.00 0.00 0.00 3.85
330 331 5.231568 CCTTCGGAATGAATAACACGTACTC 59.768 44.000 0.00 0.00 35.63 2.59
331 332 5.105635 TCCTTCGGAATGAATAACACGTACT 60.106 40.000 0.00 0.00 35.63 2.73
332 333 5.005107 GTCCTTCGGAATGAATAACACGTAC 59.995 44.000 0.00 0.00 35.63 3.67
333 334 5.104374 GTCCTTCGGAATGAATAACACGTA 58.896 41.667 0.00 0.00 35.63 3.57
334 335 3.930848 GTCCTTCGGAATGAATAACACGT 59.069 43.478 0.00 0.00 35.63 4.49
335 336 3.930229 TGTCCTTCGGAATGAATAACACG 59.070 43.478 0.00 0.00 35.63 4.49
336 337 4.693566 TGTGTCCTTCGGAATGAATAACAC 59.306 41.667 12.19 12.19 44.30 3.32
337 338 4.900684 TGTGTCCTTCGGAATGAATAACA 58.099 39.130 0.00 1.57 35.63 2.41
338 339 6.258160 CAATGTGTCCTTCGGAATGAATAAC 58.742 40.000 0.00 0.00 35.63 1.89
339 340 5.356751 CCAATGTGTCCTTCGGAATGAATAA 59.643 40.000 0.00 0.00 35.63 1.40
340 341 4.881273 CCAATGTGTCCTTCGGAATGAATA 59.119 41.667 0.00 0.00 35.63 1.75
341 342 3.696051 CCAATGTGTCCTTCGGAATGAAT 59.304 43.478 0.00 0.00 35.63 2.57
342 343 3.081061 CCAATGTGTCCTTCGGAATGAA 58.919 45.455 0.00 0.00 31.38 2.57
343 344 2.304470 TCCAATGTGTCCTTCGGAATGA 59.696 45.455 0.00 0.00 31.38 2.57
344 345 2.710377 TCCAATGTGTCCTTCGGAATG 58.290 47.619 0.00 0.00 31.38 2.67
345 346 3.282021 CATCCAATGTGTCCTTCGGAAT 58.718 45.455 0.00 0.00 31.38 3.01
346 347 2.710377 CATCCAATGTGTCCTTCGGAA 58.290 47.619 0.00 0.00 31.38 4.30
347 348 1.678728 GCATCCAATGTGTCCTTCGGA 60.679 52.381 0.00 0.00 0.00 4.55
348 349 0.734889 GCATCCAATGTGTCCTTCGG 59.265 55.000 0.00 0.00 0.00 4.30
349 350 0.734889 GGCATCCAATGTGTCCTTCG 59.265 55.000 0.00 0.00 0.00 3.79
350 351 1.747355 CTGGCATCCAATGTGTCCTTC 59.253 52.381 0.00 0.00 30.80 3.46
351 352 1.355381 TCTGGCATCCAATGTGTCCTT 59.645 47.619 0.00 0.00 30.80 3.36
352 353 0.994247 TCTGGCATCCAATGTGTCCT 59.006 50.000 0.00 0.00 30.80 3.85
353 354 1.098050 GTCTGGCATCCAATGTGTCC 58.902 55.000 0.00 0.00 30.80 4.02
354 355 1.825090 TGTCTGGCATCCAATGTGTC 58.175 50.000 0.00 0.00 30.80 3.67
355 356 2.165167 CTTGTCTGGCATCCAATGTGT 58.835 47.619 0.00 0.00 30.80 3.72
356 357 2.422479 CTCTTGTCTGGCATCCAATGTG 59.578 50.000 0.00 0.00 30.80 3.21
357 358 2.719739 CTCTTGTCTGGCATCCAATGT 58.280 47.619 0.00 0.00 30.80 2.71
358 359 1.404391 GCTCTTGTCTGGCATCCAATG 59.596 52.381 0.00 0.00 30.80 2.82
359 360 1.684248 GGCTCTTGTCTGGCATCCAAT 60.684 52.381 0.00 0.00 30.80 3.16
360 361 0.322816 GGCTCTTGTCTGGCATCCAA 60.323 55.000 0.00 0.00 30.80 3.53
361 362 1.300963 GGCTCTTGTCTGGCATCCA 59.699 57.895 0.00 0.00 0.00 3.41
362 363 0.106819 ATGGCTCTTGTCTGGCATCC 60.107 55.000 0.00 0.00 44.40 3.51
363 364 1.022735 CATGGCTCTTGTCTGGCATC 58.977 55.000 0.00 0.00 45.59 3.91
365 366 0.607217 CACATGGCTCTTGTCTGGCA 60.607 55.000 0.00 0.00 42.73 4.92
366 367 0.607489 ACACATGGCTCTTGTCTGGC 60.607 55.000 0.00 0.00 0.00 4.85
367 368 1.162698 CACACATGGCTCTTGTCTGG 58.837 55.000 0.00 0.00 0.00 3.86
368 369 1.802960 GTCACACATGGCTCTTGTCTG 59.197 52.381 0.00 0.00 0.00 3.51
369 370 1.417517 TGTCACACATGGCTCTTGTCT 59.582 47.619 0.00 0.00 0.00 3.41
370 371 1.882912 TGTCACACATGGCTCTTGTC 58.117 50.000 0.00 0.00 0.00 3.18
371 372 2.039480 AGATGTCACACATGGCTCTTGT 59.961 45.455 0.00 0.00 39.27 3.16
372 373 2.676839 GAGATGTCACACATGGCTCTTG 59.323 50.000 0.00 0.00 39.27 3.02
373 374 2.303890 TGAGATGTCACACATGGCTCTT 59.696 45.455 0.00 0.00 39.27 2.85
374 375 1.904537 TGAGATGTCACACATGGCTCT 59.095 47.619 0.00 0.00 39.27 4.09
375 376 2.391616 TGAGATGTCACACATGGCTC 57.608 50.000 0.00 0.00 39.27 4.70
376 377 2.504585 AGATGAGATGTCACACATGGCT 59.495 45.455 0.00 0.00 39.27 4.75
377 378 2.915349 AGATGAGATGTCACACATGGC 58.085 47.619 0.00 0.00 39.27 4.40
378 379 4.343239 TCCTAGATGAGATGTCACACATGG 59.657 45.833 0.00 0.31 39.27 3.66
379 380 5.509332 CCTCCTAGATGAGATGTCACACATG 60.509 48.000 0.00 0.00 39.27 3.21
380 381 4.588106 CCTCCTAGATGAGATGTCACACAT 59.412 45.833 0.00 0.00 42.43 3.21
381 382 3.956848 CCTCCTAGATGAGATGTCACACA 59.043 47.826 0.00 0.00 34.75 3.72
382 383 3.957497 ACCTCCTAGATGAGATGTCACAC 59.043 47.826 0.00 0.00 34.75 3.82
383 384 3.956848 CACCTCCTAGATGAGATGTCACA 59.043 47.826 0.00 0.00 34.75 3.58
384 385 3.957497 ACACCTCCTAGATGAGATGTCAC 59.043 47.826 0.00 0.00 33.71 3.67
385 386 4.256983 ACACCTCCTAGATGAGATGTCA 57.743 45.455 0.00 0.00 33.71 3.58
386 387 5.010213 GGTAACACCTCCTAGATGAGATGTC 59.990 48.000 0.00 0.00 38.18 3.06
387 388 4.896482 GGTAACACCTCCTAGATGAGATGT 59.104 45.833 0.00 0.00 40.99 3.06
388 389 4.022762 CGGTAACACCTCCTAGATGAGATG 60.023 50.000 0.00 0.00 35.66 2.90
389 390 4.145807 CGGTAACACCTCCTAGATGAGAT 58.854 47.826 0.00 0.00 35.66 2.75
390 391 3.053842 ACGGTAACACCTCCTAGATGAGA 60.054 47.826 0.00 0.00 35.66 3.27
391 392 3.066900 CACGGTAACACCTCCTAGATGAG 59.933 52.174 0.00 0.00 35.66 2.90
392 393 3.021695 CACGGTAACACCTCCTAGATGA 58.978 50.000 0.00 0.00 35.66 2.92
393 394 2.758979 ACACGGTAACACCTCCTAGATG 59.241 50.000 0.00 0.00 35.66 2.90
394 395 3.022406 GACACGGTAACACCTCCTAGAT 58.978 50.000 0.00 0.00 35.66 1.98
395 396 2.224843 TGACACGGTAACACCTCCTAGA 60.225 50.000 0.00 0.00 35.66 2.43
396 397 2.094854 GTGACACGGTAACACCTCCTAG 60.095 54.545 0.00 0.00 35.66 3.02
397 398 1.888512 GTGACACGGTAACACCTCCTA 59.111 52.381 0.00 0.00 35.66 2.94
398 399 0.677842 GTGACACGGTAACACCTCCT 59.322 55.000 0.00 0.00 35.66 3.69
399 400 3.206090 GTGACACGGTAACACCTCC 57.794 57.895 0.00 0.00 35.66 4.30
410 411 2.048222 ATGCAGTCCGGTGACACG 60.048 61.111 0.00 0.00 44.33 4.49
411 412 2.680913 GCATGCAGTCCGGTGACAC 61.681 63.158 14.21 0.00 44.33 3.67
412 413 2.358615 GCATGCAGTCCGGTGACA 60.359 61.111 14.21 0.00 44.33 3.58
413 414 3.127533 GGCATGCAGTCCGGTGAC 61.128 66.667 21.36 0.00 42.09 3.67
414 415 3.189376 TTGGCATGCAGTCCGGTGA 62.189 57.895 21.36 0.00 0.00 4.02
415 416 2.672651 TTGGCATGCAGTCCGGTG 60.673 61.111 21.36 0.00 0.00 4.94
416 417 2.360350 CTTGGCATGCAGTCCGGT 60.360 61.111 21.36 0.00 0.00 5.28
417 418 3.818787 GCTTGGCATGCAGTCCGG 61.819 66.667 21.36 0.00 0.00 5.14
418 419 3.057548 TGCTTGGCATGCAGTCCG 61.058 61.111 22.45 3.72 35.31 4.79
423 424 3.687102 GCACCTGCTTGGCATGCA 61.687 61.111 24.26 24.26 42.10 3.96
424 425 3.229156 TTGCACCTGCTTGGCATGC 62.229 57.895 17.62 17.62 42.61 4.06
425 426 1.080093 CTTGCACCTGCTTGGCATG 60.080 57.895 0.00 0.00 42.66 4.06
426 427 1.530013 GACTTGCACCTGCTTGGCAT 61.530 55.000 0.00 0.00 42.66 4.40
427 428 2.123769 ACTTGCACCTGCTTGGCA 60.124 55.556 0.00 0.00 42.66 4.92
428 429 1.737355 TTGACTTGCACCTGCTTGGC 61.737 55.000 0.00 0.00 42.66 4.52
429 430 0.313043 CTTGACTTGCACCTGCTTGG 59.687 55.000 0.00 0.00 42.66 3.61
430 431 1.002033 GACTTGACTTGCACCTGCTTG 60.002 52.381 0.00 0.00 42.66 4.01
431 432 1.312815 GACTTGACTTGCACCTGCTT 58.687 50.000 0.00 0.00 42.66 3.91
432 433 0.181114 TGACTTGACTTGCACCTGCT 59.819 50.000 0.00 0.00 42.66 4.24
433 434 1.024271 TTGACTTGACTTGCACCTGC 58.976 50.000 0.00 0.00 42.50 4.85
434 435 1.334869 GGTTGACTTGACTTGCACCTG 59.665 52.381 0.00 0.00 0.00 4.00
435 436 1.064758 TGGTTGACTTGACTTGCACCT 60.065 47.619 0.00 0.00 0.00 4.00
436 437 1.065551 GTGGTTGACTTGACTTGCACC 59.934 52.381 0.00 0.00 0.00 5.01
437 438 1.065551 GGTGGTTGACTTGACTTGCAC 59.934 52.381 0.00 0.00 0.00 4.57
438 439 1.388547 GGTGGTTGACTTGACTTGCA 58.611 50.000 0.00 0.00 0.00 4.08
439 440 0.668535 GGGTGGTTGACTTGACTTGC 59.331 55.000 0.00 0.00 0.00 4.01
440 441 2.051334 TGGGTGGTTGACTTGACTTG 57.949 50.000 0.00 0.00 0.00 3.16
441 442 2.025321 ACTTGGGTGGTTGACTTGACTT 60.025 45.455 0.00 0.00 0.00 3.01
442 443 1.564348 ACTTGGGTGGTTGACTTGACT 59.436 47.619 0.00 0.00 0.00 3.41
443 444 2.052782 ACTTGGGTGGTTGACTTGAC 57.947 50.000 0.00 0.00 0.00 3.18
444 445 2.818751 AACTTGGGTGGTTGACTTGA 57.181 45.000 0.00 0.00 0.00 3.02
445 446 3.194542 TGAAAACTTGGGTGGTTGACTTG 59.805 43.478 0.00 0.00 0.00 3.16
446 447 3.194755 GTGAAAACTTGGGTGGTTGACTT 59.805 43.478 0.00 0.00 0.00 3.01
447 448 2.758423 GTGAAAACTTGGGTGGTTGACT 59.242 45.455 0.00 0.00 0.00 3.41
448 449 2.758423 AGTGAAAACTTGGGTGGTTGAC 59.242 45.455 0.00 0.00 0.00 3.18
449 450 3.094484 AGTGAAAACTTGGGTGGTTGA 57.906 42.857 0.00 0.00 0.00 3.18
450 451 3.243401 GCTAGTGAAAACTTGGGTGGTTG 60.243 47.826 0.00 0.00 0.00 3.77
451 452 2.956333 GCTAGTGAAAACTTGGGTGGTT 59.044 45.455 0.00 0.00 0.00 3.67
452 453 2.174854 AGCTAGTGAAAACTTGGGTGGT 59.825 45.455 0.00 0.00 0.00 4.16
453 454 2.863809 AGCTAGTGAAAACTTGGGTGG 58.136 47.619 0.00 0.00 0.00 4.61
454 455 4.642429 ACTAGCTAGTGAAAACTTGGGTG 58.358 43.478 25.52 0.00 34.72 4.61
455 456 4.976540 ACTAGCTAGTGAAAACTTGGGT 57.023 40.909 25.52 0.00 34.72 4.51
456 457 5.181433 GGAAACTAGCTAGTGAAAACTTGGG 59.819 44.000 26.70 0.00 36.50 4.12
457 458 5.763204 TGGAAACTAGCTAGTGAAAACTTGG 59.237 40.000 26.70 0.00 36.50 3.61
458 459 6.861065 TGGAAACTAGCTAGTGAAAACTTG 57.139 37.500 26.70 0.00 36.50 3.16
459 460 7.338449 TGTTTGGAAACTAGCTAGTGAAAACTT 59.662 33.333 29.91 21.39 39.59 2.66
460 461 6.826741 TGTTTGGAAACTAGCTAGTGAAAACT 59.173 34.615 29.91 16.42 39.59 2.66
461 462 7.023197 TGTTTGGAAACTAGCTAGTGAAAAC 57.977 36.000 26.70 26.97 39.59 2.43
462 463 7.338449 ACTTGTTTGGAAACTAGCTAGTGAAAA 59.662 33.333 26.70 19.33 42.75 2.29
463 464 6.826741 ACTTGTTTGGAAACTAGCTAGTGAAA 59.173 34.615 26.70 18.35 42.75 2.69
464 465 6.354130 ACTTGTTTGGAAACTAGCTAGTGAA 58.646 36.000 26.70 14.00 42.75 3.18
465 466 5.925509 ACTTGTTTGGAAACTAGCTAGTGA 58.074 37.500 26.70 8.88 42.75 3.41
466 467 6.430451 CAACTTGTTTGGAAACTAGCTAGTG 58.570 40.000 26.70 12.32 42.75 2.74
467 468 5.008712 GCAACTTGTTTGGAAACTAGCTAGT 59.991 40.000 20.95 20.95 42.75 2.57
468 469 5.452777 GCAACTTGTTTGGAAACTAGCTAG 58.547 41.667 19.44 19.44 42.75 3.42
469 470 4.024387 CGCAACTTGTTTGGAAACTAGCTA 60.024 41.667 11.94 0.00 42.75 3.32
470 471 3.243068 CGCAACTTGTTTGGAAACTAGCT 60.243 43.478 11.94 0.00 42.75 3.32
471 472 3.042887 CGCAACTTGTTTGGAAACTAGC 58.957 45.455 11.94 4.96 42.75 3.42
472 473 3.550030 CCCGCAACTTGTTTGGAAACTAG 60.550 47.826 10.83 10.83 43.94 2.57
473 474 2.359531 CCCGCAACTTGTTTGGAAACTA 59.640 45.455 4.02 0.00 39.59 2.24
474 475 1.136110 CCCGCAACTTGTTTGGAAACT 59.864 47.619 4.02 0.00 39.59 2.66
475 476 1.134936 ACCCGCAACTTGTTTGGAAAC 60.135 47.619 3.84 0.00 39.33 2.78
476 477 1.135333 GACCCGCAACTTGTTTGGAAA 59.865 47.619 3.84 0.00 35.51 3.13
477 478 0.741915 GACCCGCAACTTGTTTGGAA 59.258 50.000 3.84 0.00 35.51 3.53
478 479 0.394488 TGACCCGCAACTTGTTTGGA 60.394 50.000 3.84 0.00 35.51 3.53
479 480 0.457851 TTGACCCGCAACTTGTTTGG 59.542 50.000 0.00 0.00 35.51 3.28
494 495 4.947147 TGGTGGCTGGCCGTTGAC 62.947 66.667 7.14 0.00 39.42 3.18
495 496 2.992817 AAATGGTGGCTGGCCGTTGA 62.993 55.000 7.14 0.00 39.42 3.18
496 497 2.098426 AAAATGGTGGCTGGCCGTTG 62.098 55.000 7.14 0.00 39.42 4.10
497 498 1.815817 GAAAATGGTGGCTGGCCGTT 61.816 55.000 7.14 0.00 39.42 4.44
498 499 2.203625 AAAATGGTGGCTGGCCGT 60.204 55.556 7.14 0.00 39.42 5.68
499 500 1.535204 AAGAAAATGGTGGCTGGCCG 61.535 55.000 7.14 0.00 39.42 6.13
500 501 0.686789 AAAGAAAATGGTGGCTGGCC 59.313 50.000 4.43 4.43 0.00 5.36
501 502 2.224257 TGAAAAGAAAATGGTGGCTGGC 60.224 45.455 0.00 0.00 0.00 4.85
502 503 3.070015 AGTGAAAAGAAAATGGTGGCTGG 59.930 43.478 0.00 0.00 0.00 4.85
503 504 4.326504 AGTGAAAAGAAAATGGTGGCTG 57.673 40.909 0.00 0.00 0.00 4.85
504 505 7.577616 GCTTATAGTGAAAAGAAAATGGTGGCT 60.578 37.037 0.00 0.00 0.00 4.75
505 506 6.531594 GCTTATAGTGAAAAGAAAATGGTGGC 59.468 38.462 0.00 0.00 0.00 5.01
506 507 7.756722 CAGCTTATAGTGAAAAGAAAATGGTGG 59.243 37.037 0.00 0.00 0.00 4.61
507 508 8.514594 TCAGCTTATAGTGAAAAGAAAATGGTG 58.485 33.333 0.00 0.00 0.00 4.17
508 509 8.635765 TCAGCTTATAGTGAAAAGAAAATGGT 57.364 30.769 0.00 0.00 0.00 3.55
509 510 7.699812 GCTCAGCTTATAGTGAAAAGAAAATGG 59.300 37.037 0.00 0.00 0.00 3.16
510 511 8.457261 AGCTCAGCTTATAGTGAAAAGAAAATG 58.543 33.333 0.00 0.00 33.89 2.32
511 512 8.572855 AGCTCAGCTTATAGTGAAAAGAAAAT 57.427 30.769 0.00 0.00 33.89 1.82
512 513 7.661437 TGAGCTCAGCTTATAGTGAAAAGAAAA 59.339 33.333 13.74 0.00 39.88 2.29
513 514 7.118390 GTGAGCTCAGCTTATAGTGAAAAGAAA 59.882 37.037 18.89 0.00 39.88 2.52
514 515 6.591834 GTGAGCTCAGCTTATAGTGAAAAGAA 59.408 38.462 18.89 0.00 39.88 2.52
515 516 6.102663 GTGAGCTCAGCTTATAGTGAAAAGA 58.897 40.000 18.89 0.00 39.88 2.52
516 517 5.005203 CGTGAGCTCAGCTTATAGTGAAAAG 59.995 44.000 18.89 0.00 39.88 2.27
517 518 4.864806 CGTGAGCTCAGCTTATAGTGAAAA 59.135 41.667 18.89 0.00 39.88 2.29
518 519 4.157840 TCGTGAGCTCAGCTTATAGTGAAA 59.842 41.667 18.89 0.00 39.88 2.69
519 520 3.694566 TCGTGAGCTCAGCTTATAGTGAA 59.305 43.478 18.89 0.00 39.88 3.18
520 521 3.279434 TCGTGAGCTCAGCTTATAGTGA 58.721 45.455 18.89 1.35 39.88 3.41
521 522 3.313803 TCTCGTGAGCTCAGCTTATAGTG 59.686 47.826 18.89 4.28 39.88 2.74
522 523 3.546724 TCTCGTGAGCTCAGCTTATAGT 58.453 45.455 18.89 0.00 39.88 2.12
523 524 4.764679 ATCTCGTGAGCTCAGCTTATAG 57.235 45.455 18.89 8.43 39.88 1.31
524 525 9.785982 ATATATATCTCGTGAGCTCAGCTTATA 57.214 33.333 18.89 13.11 39.88 0.98
525 526 8.690203 ATATATATCTCGTGAGCTCAGCTTAT 57.310 34.615 18.89 11.31 39.88 1.73
526 527 7.227711 GGATATATATCTCGTGAGCTCAGCTTA 59.772 40.741 18.89 3.78 34.30 3.09
527 528 6.039270 GGATATATATCTCGTGAGCTCAGCTT 59.961 42.308 18.89 3.26 34.30 3.74
528 529 5.530915 GGATATATATCTCGTGAGCTCAGCT 59.469 44.000 18.89 0.00 35.75 4.24
529 530 5.530915 AGGATATATATCTCGTGAGCTCAGC 59.469 44.000 18.89 11.25 33.28 4.26
530 531 7.281999 TCAAGGATATATATCTCGTGAGCTCAG 59.718 40.741 18.89 11.59 33.28 3.35
531 532 7.112779 TCAAGGATATATATCTCGTGAGCTCA 58.887 38.462 13.74 13.74 33.28 4.26
532 533 7.561021 TCAAGGATATATATCTCGTGAGCTC 57.439 40.000 19.72 6.82 33.28 4.09
533 534 7.946381 TTCAAGGATATATATCTCGTGAGCT 57.054 36.000 19.72 6.23 33.28 4.09
534 535 8.865001 GTTTTCAAGGATATATATCTCGTGAGC 58.135 37.037 19.72 13.17 33.28 4.26
535 536 9.914131 TGTTTTCAAGGATATATATCTCGTGAG 57.086 33.333 19.72 7.08 33.28 3.51
553 554 8.194104 TCTTGCTAACTAAATGCTTGTTTTCAA 58.806 29.630 0.00 0.00 38.21 2.69
554 555 7.711846 TCTTGCTAACTAAATGCTTGTTTTCA 58.288 30.769 0.00 0.00 0.00 2.69
555 556 7.862873 ACTCTTGCTAACTAAATGCTTGTTTTC 59.137 33.333 0.00 0.00 0.00 2.29
556 557 7.716612 ACTCTTGCTAACTAAATGCTTGTTTT 58.283 30.769 0.00 0.00 0.00 2.43
557 558 7.277174 ACTCTTGCTAACTAAATGCTTGTTT 57.723 32.000 0.00 0.00 0.00 2.83
558 559 6.884280 ACTCTTGCTAACTAAATGCTTGTT 57.116 33.333 0.00 0.00 0.00 2.83
559 560 8.567285 AATACTCTTGCTAACTAAATGCTTGT 57.433 30.769 0.00 0.00 0.00 3.16
563 564 9.717892 GGTTAAATACTCTTGCTAACTAAATGC 57.282 33.333 0.00 0.00 0.00 3.56
569 570 9.961265 GTTTTTGGTTAAATACTCTTGCTAACT 57.039 29.630 0.00 0.00 0.00 2.24
570 571 9.961265 AGTTTTTGGTTAAATACTCTTGCTAAC 57.039 29.630 0.00 0.00 34.37 2.34
573 574 8.573885 GGTAGTTTTTGGTTAAATACTCTTGCT 58.426 33.333 0.00 0.00 38.47 3.91
574 575 8.354426 TGGTAGTTTTTGGTTAAATACTCTTGC 58.646 33.333 0.00 0.00 38.47 4.01
575 576 9.673454 GTGGTAGTTTTTGGTTAAATACTCTTG 57.327 33.333 0.00 0.00 38.47 3.02
629 630 2.811855 TCGCACAAAAACGTAGAGTGA 58.188 42.857 12.61 1.98 32.14 3.41
1017 1019 2.750637 TCGTCCGAGCTGTCCTCC 60.751 66.667 0.00 0.00 37.27 4.30
1108 1110 7.176690 ACTTCGAACCAATTTGGATGAACTAAT 59.823 33.333 22.19 0.00 40.96 1.73
1126 1178 4.287238 TCCTGCAAAAGAAACTTCGAAC 57.713 40.909 0.00 0.00 0.00 3.95
1668 1746 8.507249 AGCAACAGAGATAAATTCAGTTAACAC 58.493 33.333 8.61 0.00 0.00 3.32
2165 2243 8.680903 CATACTTAACTCAATCTTTGCCTGATT 58.319 33.333 0.00 0.00 34.82 2.57
2450 2528 1.340017 TGACATTCCAAGGCCAGCTAC 60.340 52.381 5.01 0.00 0.00 3.58
2822 2901 8.534954 TGTCAGGCACTATCTAATAGTAGTTT 57.465 34.615 0.00 0.00 43.93 2.66
2908 2987 3.978687 TCGTCAGTCCTGAACTTTCTTC 58.021 45.455 0.00 0.00 41.85 2.87
3218 3297 1.154188 GACTCTGACGACGAGGTGC 60.154 63.158 0.00 0.00 32.83 5.01
3342 3427 0.413037 TCCCAGCCCCAATCAACAAT 59.587 50.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.