Multiple sequence alignment - TraesCS5A01G338900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G338900 chr5A 100.000 8184 0 0 1 8184 546553457 546561640 0.000000e+00 15114.0
1 TraesCS5A01G338900 chr5A 76.903 775 145 20 2733 3487 519881228 519881988 7.650000e-110 409.0
2 TraesCS5A01G338900 chr5A 87.050 278 26 4 1953 2227 519880448 519880718 1.030000e-78 305.0
3 TraesCS5A01G338900 chr5D 92.875 4772 266 30 1726 6442 431229500 431234252 0.000000e+00 6861.0
4 TraesCS5A01G338900 chr5D 91.705 1531 116 6 6593 8118 431234244 431235768 0.000000e+00 2113.0
5 TraesCS5A01G338900 chr5D 88.280 1041 51 23 716 1729 431228372 431229368 0.000000e+00 1181.0
6 TraesCS5A01G338900 chr5D 91.525 590 29 4 9 580 431215551 431216137 0.000000e+00 793.0
7 TraesCS5A01G338900 chr5D 77.821 771 130 30 2733 3480 408789246 408789998 9.750000e-119 438.0
8 TraesCS5A01G338900 chr5D 87.500 264 24 3 1967 2227 408788476 408788733 6.210000e-76 296.0
9 TraesCS5A01G338900 chr5D 87.117 163 20 1 6439 6600 450851354 450851516 5.040000e-42 183.0
10 TraesCS5A01G338900 chr5D 84.553 123 12 4 1617 1733 386689233 386689112 1.870000e-21 115.0
11 TraesCS5A01G338900 chr5B 90.675 4783 345 45 1726 6442 520902592 520907339 0.000000e+00 6268.0
12 TraesCS5A01G338900 chr5B 89.494 1542 131 12 6598 8115 520907336 520908870 0.000000e+00 1921.0
13 TraesCS5A01G338900 chr5B 89.563 412 23 5 175 567 520899690 520900100 9.480000e-139 505.0
14 TraesCS5A01G338900 chr5B 77.139 783 131 31 2734 3487 490732894 490733657 2.130000e-110 411.0
15 TraesCS5A01G338900 chr5B 86.632 389 23 17 794 1175 520901405 520901771 3.560000e-108 403.0
16 TraesCS5A01G338900 chr5B 86.691 278 27 4 1953 2227 490732113 490732383 4.800000e-77 300.0
17 TraesCS5A01G338900 chr5B 86.228 167 19 2 1370 1532 520901805 520901971 2.350000e-40 178.0
18 TraesCS5A01G338900 chr5B 88.596 114 10 3 1614 1724 520902359 520902472 1.430000e-27 135.0
19 TraesCS5A01G338900 chr3D 87.500 168 19 2 6435 6600 153507853 153508020 8.380000e-45 193.0
20 TraesCS5A01G338900 chr3D 83.193 119 12 4 1612 1724 5866904 5867020 1.450000e-17 102.0
21 TraesCS5A01G338900 chr3D 90.909 66 6 0 1282 1347 486739746 486739681 1.130000e-13 89.8
22 TraesCS5A01G338900 chr4D 87.425 167 17 3 6439 6604 319254518 319254355 1.080000e-43 189.0
23 TraesCS5A01G338900 chr4A 87.349 166 20 1 6439 6603 80142773 80142938 1.080000e-43 189.0
24 TraesCS5A01G338900 chr4A 86.207 116 11 4 1614 1724 693877418 693877533 4.010000e-23 121.0
25 TraesCS5A01G338900 chr4A 93.443 61 4 0 1280 1340 585663943 585664003 3.150000e-14 91.6
26 TraesCS5A01G338900 chr1A 85.635 181 25 1 6428 6607 59114485 59114665 1.080000e-43 189.0
27 TraesCS5A01G338900 chr3B 86.905 168 20 2 6435 6600 225174035 225174202 3.900000e-43 187.0
28 TraesCS5A01G338900 chr3B 96.667 60 2 0 1280 1339 440522723 440522664 5.230000e-17 100.0
29 TraesCS5A01G338900 chr3B 80.714 140 15 6 1213 1340 796508647 796508786 1.880000e-16 99.0
30 TraesCS5A01G338900 chr3A 87.117 163 20 1 6439 6600 513027121 513027283 5.040000e-42 183.0
31 TraesCS5A01G338900 chrUn 86.420 162 20 2 6440 6600 81477639 81477799 8.440000e-40 176.0
32 TraesCS5A01G338900 chr1B 86.503 163 19 3 6440 6600 53067512 53067351 8.440000e-40 176.0
33 TraesCS5A01G338900 chr1B 86.047 86 9 1 611 696 268797493 268797575 1.130000e-13 89.8
34 TraesCS5A01G338900 chr2B 89.691 97 7 3 1640 1733 740319754 740319850 4.010000e-23 121.0
35 TraesCS5A01G338900 chr1D 86.486 111 14 1 1614 1724 6176785 6176894 4.010000e-23 121.0
36 TraesCS5A01G338900 chr1D 85.057 87 8 4 611 696 194135248 194135330 5.260000e-12 84.2
37 TraesCS5A01G338900 chr6D 80.851 141 13 4 1213 1340 311580557 311580696 1.880000e-16 99.0
38 TraesCS5A01G338900 chr6D 82.727 110 17 2 1626 1733 459736510 459736401 6.760000e-16 97.1
39 TraesCS5A01G338900 chr6D 92.063 63 5 0 1279 1341 404598513 404598575 1.130000e-13 89.8
40 TraesCS5A01G338900 chr2A 83.784 111 11 4 1629 1733 701863042 701862933 1.880000e-16 99.0
41 TraesCS5A01G338900 chr7D 88.158 76 7 2 1280 1353 6961040 6961115 1.130000e-13 89.8
42 TraesCS5A01G338900 chr4B 88.889 72 5 1 1279 1350 9429798 9429866 1.460000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G338900 chr5A 546553457 546561640 8183 False 15114.000000 15114 100.000000 1 8184 1 chr5A.!!$F1 8183
1 TraesCS5A01G338900 chr5A 519880448 519881988 1540 False 357.000000 409 81.976500 1953 3487 2 chr5A.!!$F2 1534
2 TraesCS5A01G338900 chr5D 431228372 431235768 7396 False 3385.000000 6861 90.953333 716 8118 3 chr5D.!!$F4 7402
3 TraesCS5A01G338900 chr5D 431215551 431216137 586 False 793.000000 793 91.525000 9 580 1 chr5D.!!$F1 571
4 TraesCS5A01G338900 chr5D 408788476 408789998 1522 False 367.000000 438 82.660500 1967 3480 2 chr5D.!!$F3 1513
5 TraesCS5A01G338900 chr5B 520899690 520908870 9180 False 1568.333333 6268 88.531333 175 8115 6 chr5B.!!$F2 7940
6 TraesCS5A01G338900 chr5B 490732113 490733657 1544 False 355.500000 411 81.915000 1953 3487 2 chr5B.!!$F1 1534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 2042 0.174617 CCAACACCAACACCAACACC 59.825 55.000 0.00 0.00 0.00 4.16 F
1401 2545 0.433492 CAACTCCGTACGTTTGCTCG 59.567 55.000 15.21 0.00 0.00 5.03 F
2089 3710 1.876799 CACGGTGACATTTGGTAGCAA 59.123 47.619 2.54 2.54 0.00 3.91 F
3132 4894 1.534729 AGAAACGGATGCTTGGTTCC 58.465 50.000 0.00 0.00 0.00 3.62 F
4011 5779 0.113385 TCTAGCCTAGCCTAGCCCAG 59.887 60.000 2.79 0.00 35.78 4.45 F
4358 6126 0.105964 TTTGTACACAGCTGACGCCT 59.894 50.000 23.35 0.00 36.60 5.52 F
5002 6811 0.031010 GAGAGGTATGGGGAGGGTGT 60.031 60.000 0.00 0.00 0.00 4.16 F
5507 7318 1.071699 TGCGGCTGAACCTTACTCTTT 59.928 47.619 0.00 0.00 35.61 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 3800 1.481772 CAATGGCAATGACCCGGAAAT 59.518 47.619 0.73 0.0 0.00 2.17 R
3007 4751 4.379082 GCAAAGTAAATCTACGTGGGGTTG 60.379 45.833 0.00 0.0 32.87 3.77 R
3857 5625 1.477014 GCCAGCTACTTGGGGTATTCC 60.477 57.143 0.00 0.0 38.72 3.01 R
4139 5907 0.034089 GGAACCATCCAGTCTTGGGG 60.034 60.000 0.00 0.0 45.79 4.96 R
4840 6631 0.706433 ACGGGGAACTAGGGTCACTA 59.294 55.000 0.00 0.0 0.00 2.74 R
5923 7734 1.060729 TGGGGTGCTAACTAGTTGCA 58.939 50.000 18.56 20.2 0.00 4.08 R
6412 8229 0.846693 AAGTGACTTCTTGGCAGGGT 59.153 50.000 0.00 0.0 31.98 4.34 R
7486 9323 0.318762 AGTTGCTTCCTCTCACGGAC 59.681 55.000 0.00 0.0 31.44 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.092521 AGTGACTGTATTCTGTCTGATTTTTG 57.907 34.615 10.02 0.00 41.17 2.44
84 85 7.933577 AGTGACTGTATTCTGTCTGATTTTTGA 59.066 33.333 10.02 0.00 41.17 2.69
102 104 2.639065 TGAAATTATGGGACTGCGACC 58.361 47.619 0.00 0.00 0.00 4.79
117 119 2.203153 ACCGGCAGCGTTGTTCTT 60.203 55.556 0.00 0.00 0.00 2.52
123 125 0.572125 GCAGCGTTGTTCTTTGCAAC 59.428 50.000 0.00 0.00 41.81 4.17
139 141 2.024414 GCAACCAACTTCTTCCACTGT 58.976 47.619 0.00 0.00 0.00 3.55
142 144 4.497507 GCAACCAACTTCTTCCACTGTAAC 60.498 45.833 0.00 0.00 0.00 2.50
153 155 2.714250 TCCACTGTAACCAATCCCAGTT 59.286 45.455 0.00 0.00 36.06 3.16
154 156 3.911260 TCCACTGTAACCAATCCCAGTTA 59.089 43.478 0.00 0.00 36.06 2.24
156 158 4.007659 CACTGTAACCAATCCCAGTTACC 58.992 47.826 9.77 0.00 44.97 2.85
158 160 5.046159 CACTGTAACCAATCCCAGTTACCTA 60.046 44.000 9.77 0.00 44.97 3.08
238 240 2.584835 TGATCCTTGGTCAAACCCAG 57.415 50.000 0.00 0.00 37.50 4.45
294 296 5.220381 TCTTATCGAATTCACATACGAGGC 58.780 41.667 6.22 0.00 38.12 4.70
488 509 2.066262 ACAGTATTCGAGCGTTGTTGG 58.934 47.619 0.00 0.00 0.00 3.77
492 513 2.450609 ATTCGAGCGTTGTTGGTACT 57.549 45.000 0.00 0.00 0.00 2.73
542 563 2.223386 GCTAGAGTGTAACAGCTCCGAG 60.223 54.545 0.00 0.00 41.43 4.63
543 564 2.201921 AGAGTGTAACAGCTCCGAGA 57.798 50.000 0.00 0.00 41.43 4.04
554 575 4.880759 ACAGCTCCGAGATTGATATGAAG 58.119 43.478 0.00 0.00 0.00 3.02
580 601 7.469537 TTCAGGGAACAAACAACTAAAGAAA 57.530 32.000 0.00 0.00 0.00 2.52
581 602 7.469537 TCAGGGAACAAACAACTAAAGAAAA 57.530 32.000 0.00 0.00 0.00 2.29
582 603 7.543756 TCAGGGAACAAACAACTAAAGAAAAG 58.456 34.615 0.00 0.00 0.00 2.27
583 604 7.394923 TCAGGGAACAAACAACTAAAGAAAAGA 59.605 33.333 0.00 0.00 0.00 2.52
584 605 8.197439 CAGGGAACAAACAACTAAAGAAAAGAT 58.803 33.333 0.00 0.00 0.00 2.40
585 606 8.758829 AGGGAACAAACAACTAAAGAAAAGATT 58.241 29.630 0.00 0.00 0.00 2.40
586 607 8.817100 GGGAACAAACAACTAAAGAAAAGATTG 58.183 33.333 0.00 0.00 0.00 2.67
587 608 9.581099 GGAACAAACAACTAAAGAAAAGATTGA 57.419 29.630 0.00 0.00 0.00 2.57
590 611 9.450807 ACAAACAACTAAAGAAAAGATTGATCG 57.549 29.630 0.00 0.00 0.00 3.69
595 748 6.709643 ACTAAAGAAAAGATTGATCGCATCG 58.290 36.000 0.28 0.00 0.00 3.84
620 773 0.752054 CTCTGGGAGTGAGCAGATCC 59.248 60.000 0.00 0.00 0.00 3.36
631 784 3.147595 CAGATCCGGCTCGACCCA 61.148 66.667 0.00 0.00 33.26 4.51
636 789 1.822990 GATCCGGCTCGACCCATATTA 59.177 52.381 0.00 0.00 33.26 0.98
638 791 0.677288 CCGGCTCGACCCATATTACA 59.323 55.000 0.00 0.00 33.26 2.41
640 793 2.607187 CGGCTCGACCCATATTACATC 58.393 52.381 0.00 0.00 33.26 3.06
650 803 4.235360 CCCATATTACATCTTCGACCGTC 58.765 47.826 0.00 0.00 0.00 4.79
679 832 0.962356 ACGAAGATGGCAAGGGCAAG 60.962 55.000 0.00 0.00 42.43 4.01
684 837 1.664321 GATGGCAAGGGCAAGAGCAG 61.664 60.000 0.00 0.00 42.43 4.24
685 838 2.282745 GGCAAGGGCAAGAGCAGT 60.283 61.111 0.00 0.00 44.61 4.40
686 839 1.905354 GGCAAGGGCAAGAGCAGTT 60.905 57.895 0.00 0.00 44.61 3.16
707 860 4.295141 TGTGGGTGAATTTTCTCCGTAT 57.705 40.909 5.57 0.00 40.76 3.06
708 861 5.423704 TGTGGGTGAATTTTCTCCGTATA 57.576 39.130 5.57 0.00 40.76 1.47
709 862 5.424757 TGTGGGTGAATTTTCTCCGTATAG 58.575 41.667 5.57 0.00 40.76 1.31
710 863 4.272748 GTGGGTGAATTTTCTCCGTATAGC 59.727 45.833 5.57 0.00 40.76 2.97
711 864 3.813724 GGGTGAATTTTCTCCGTATAGCC 59.186 47.826 5.57 0.00 40.76 3.93
712 865 4.444449 GGGTGAATTTTCTCCGTATAGCCT 60.444 45.833 5.57 0.00 40.76 4.58
732 1532 4.401925 CCTTTGATTCAACAGGAGAGGTT 58.598 43.478 16.39 0.00 0.00 3.50
799 1703 2.949106 CAGTCCAGGCAAACGCAG 59.051 61.111 0.00 0.00 0.00 5.18
800 1704 2.281761 AGTCCAGGCAAACGCAGG 60.282 61.111 0.00 0.00 0.00 4.85
801 1705 4.043200 GTCCAGGCAAACGCAGGC 62.043 66.667 0.00 0.00 0.00 4.85
832 1948 3.868951 GACGCAAGCACAGCACAGC 62.869 63.158 0.00 0.00 45.62 4.40
833 1949 3.956317 CGCAAGCACAGCACAGCA 61.956 61.111 0.00 0.00 0.00 4.41
834 1950 2.354305 GCAAGCACAGCACAGCAC 60.354 61.111 0.00 0.00 0.00 4.40
835 1951 3.112842 CAAGCACAGCACAGCACA 58.887 55.556 0.00 0.00 0.00 4.57
836 1952 1.008881 CAAGCACAGCACAGCACAG 60.009 57.895 0.00 0.00 0.00 3.66
837 1953 2.842256 AAGCACAGCACAGCACAGC 61.842 57.895 0.00 0.00 0.00 4.40
838 1954 3.588906 GCACAGCACAGCACAGCA 61.589 61.111 0.00 0.00 0.00 4.41
839 1955 2.330393 CACAGCACAGCACAGCAC 59.670 61.111 0.00 0.00 0.00 4.40
840 1956 2.124612 ACAGCACAGCACAGCACA 60.125 55.556 0.00 0.00 0.00 4.57
841 1957 2.184830 ACAGCACAGCACAGCACAG 61.185 57.895 0.00 0.00 0.00 3.66
842 1958 3.285215 AGCACAGCACAGCACAGC 61.285 61.111 0.00 0.00 0.00 4.40
843 1959 3.588906 GCACAGCACAGCACAGCA 61.589 61.111 0.00 0.00 0.00 4.41
844 1960 2.330393 CACAGCACAGCACAGCAC 59.670 61.111 0.00 0.00 0.00 4.40
845 1961 2.124612 ACAGCACAGCACAGCACA 60.125 55.556 0.00 0.00 0.00 4.57
846 1962 2.184830 ACAGCACAGCACAGCACAG 61.185 57.895 0.00 0.00 0.00 3.66
888 2004 1.684983 CCCTATAAAAGCTCGACCGGA 59.315 52.381 9.46 0.00 0.00 5.14
906 2022 3.254024 AACCAGCCAGCCACCTACG 62.254 63.158 0.00 0.00 0.00 3.51
910 2026 4.715523 GCCAGCCACCTACGCCAA 62.716 66.667 0.00 0.00 0.00 4.52
911 2027 2.746277 CCAGCCACCTACGCCAAC 60.746 66.667 0.00 0.00 0.00 3.77
912 2028 2.031919 CAGCCACCTACGCCAACA 59.968 61.111 0.00 0.00 0.00 3.33
913 2029 2.032071 AGCCACCTACGCCAACAC 59.968 61.111 0.00 0.00 0.00 3.32
914 2030 3.053896 GCCACCTACGCCAACACC 61.054 66.667 0.00 0.00 0.00 4.16
915 2031 2.428187 CCACCTACGCCAACACCA 59.572 61.111 0.00 0.00 0.00 4.17
916 2032 1.228003 CCACCTACGCCAACACCAA 60.228 57.895 0.00 0.00 0.00 3.67
917 2033 1.512156 CCACCTACGCCAACACCAAC 61.512 60.000 0.00 0.00 0.00 3.77
918 2034 0.816018 CACCTACGCCAACACCAACA 60.816 55.000 0.00 0.00 0.00 3.33
919 2035 0.816421 ACCTACGCCAACACCAACAC 60.816 55.000 0.00 0.00 0.00 3.32
920 2036 1.512156 CCTACGCCAACACCAACACC 61.512 60.000 0.00 0.00 0.00 4.16
921 2037 0.816018 CTACGCCAACACCAACACCA 60.816 55.000 0.00 0.00 0.00 4.17
922 2038 0.393944 TACGCCAACACCAACACCAA 60.394 50.000 0.00 0.00 0.00 3.67
923 2039 1.226831 CGCCAACACCAACACCAAC 60.227 57.895 0.00 0.00 0.00 3.77
924 2040 1.893786 GCCAACACCAACACCAACA 59.106 52.632 0.00 0.00 0.00 3.33
925 2041 0.459411 GCCAACACCAACACCAACAC 60.459 55.000 0.00 0.00 0.00 3.32
926 2042 0.174617 CCAACACCAACACCAACACC 59.825 55.000 0.00 0.00 0.00 4.16
927 2043 0.891373 CAACACCAACACCAACACCA 59.109 50.000 0.00 0.00 0.00 4.17
928 2044 1.273606 CAACACCAACACCAACACCAA 59.726 47.619 0.00 0.00 0.00 3.67
965 2084 1.521681 GCCTTCCATTCCGTCTCCG 60.522 63.158 0.00 0.00 0.00 4.63
1185 2316 7.553044 CCATCTTAATTACTCCCTTCGTTCTTT 59.447 37.037 0.00 0.00 0.00 2.52
1186 2317 8.947115 CATCTTAATTACTCCCTTCGTTCTTTT 58.053 33.333 0.00 0.00 0.00 2.27
1187 2318 8.319143 TCTTAATTACTCCCTTCGTTCTTTTG 57.681 34.615 0.00 0.00 0.00 2.44
1190 2321 7.668525 AATTACTCCCTTCGTTCTTTTGTAG 57.331 36.000 0.00 0.00 0.00 2.74
1192 2323 4.884247 ACTCCCTTCGTTCTTTTGTAGAG 58.116 43.478 0.00 0.00 33.51 2.43
1193 2324 4.344390 ACTCCCTTCGTTCTTTTGTAGAGT 59.656 41.667 0.00 0.00 33.51 3.24
1194 2325 5.163332 ACTCCCTTCGTTCTTTTGTAGAGTT 60.163 40.000 0.00 0.00 33.51 3.01
1195 2326 5.677567 TCCCTTCGTTCTTTTGTAGAGTTT 58.322 37.500 0.00 0.00 33.51 2.66
1196 2327 6.117488 TCCCTTCGTTCTTTTGTAGAGTTTT 58.883 36.000 0.00 0.00 33.51 2.43
1197 2328 6.600427 TCCCTTCGTTCTTTTGTAGAGTTTTT 59.400 34.615 0.00 0.00 33.51 1.94
1230 2361 9.515226 TGCAGGATAGTTTTGTAGAGTTTTTAT 57.485 29.630 0.00 0.00 0.00 1.40
1335 2477 5.011840 AGACTTATATTTAGGAACGGAGGGC 59.988 44.000 0.00 0.00 0.00 5.19
1339 2481 0.819582 TTTAGGAACGGAGGGCGTAG 59.180 55.000 0.00 0.00 0.00 3.51
1357 2499 5.237996 GGCGTAGTTCAAAATATTAGTCCCC 59.762 44.000 0.00 0.00 0.00 4.81
1381 2525 5.107913 CGTTCACAAATGCACAAATGTAAGG 60.108 40.000 0.00 0.00 0.00 2.69
1398 2542 1.205820 GGCAACTCCGTACGTTTGC 59.794 57.895 26.20 26.20 0.00 3.68
1401 2545 0.433492 CAACTCCGTACGTTTGCTCG 59.567 55.000 15.21 0.00 0.00 5.03
1475 2619 7.652727 TGACGATAGAAATTCTAGGATGACAG 58.347 38.462 8.78 0.00 41.38 3.51
1554 2699 4.404394 CCCAAACATAAACATAACCCTCCC 59.596 45.833 0.00 0.00 0.00 4.30
1569 2714 3.923425 ACCCTCCCAATAGGAAAAAGACT 59.077 43.478 0.00 0.00 46.94 3.24
1799 3415 7.448748 TTTAGAATTGGACTAAAGGCAGAAC 57.551 36.000 0.00 0.00 35.70 3.01
2089 3710 1.876799 CACGGTGACATTTGGTAGCAA 59.123 47.619 2.54 2.54 0.00 3.91
2099 3720 4.278419 ACATTTGGTAGCAACAAGGAGAAC 59.722 41.667 6.90 0.00 0.00 3.01
2227 3848 5.663556 AGCTTGGGTAAGTAGCTCTAAGAAT 59.336 40.000 0.00 0.00 41.15 2.40
2442 4133 9.515020 TGTTGCTTGCTTTAGTTATTTATATGC 57.485 29.630 0.00 0.00 0.00 3.14
2619 4332 7.653311 GCCCTATATGACATTCATTGGAAAAAC 59.347 37.037 0.00 0.00 38.26 2.43
2735 4475 2.093306 TTCTGTTATCCCACACTGCG 57.907 50.000 0.00 0.00 0.00 5.18
3007 4751 6.414987 GTGATTTTGTAAGCAACTTCTGTGAC 59.585 38.462 0.00 0.00 33.82 3.67
3035 4787 4.851558 CCACGTAGATTTACTTTGCTTTGC 59.148 41.667 0.00 0.00 0.00 3.68
3050 4803 3.120199 TGCTTTGCGTTTAGATCTTGCTC 60.120 43.478 0.00 0.00 0.00 4.26
3108 4870 3.596214 TCCTTCTTTCGGTCAACTATGC 58.404 45.455 0.00 0.00 0.00 3.14
3132 4894 1.534729 AGAAACGGATGCTTGGTTCC 58.465 50.000 0.00 0.00 0.00 3.62
3277 5039 1.839747 ACGTGAAGCTACCCCACCA 60.840 57.895 0.00 0.00 0.00 4.17
3354 5119 2.698274 ACACTTGATTTTGGTTGGTCCC 59.302 45.455 0.00 0.00 34.77 4.46
3568 5333 2.299582 CTGCCCATGGTGAAAATGTTCA 59.700 45.455 11.73 0.00 41.57 3.18
3599 5364 7.336427 GCTTGATTTATCCATCTAGCTAAGCAT 59.664 37.037 9.10 0.00 44.16 3.79
3616 5381 7.935755 AGCTAAGCATATGAGTACAATGTTCAT 59.064 33.333 6.97 5.94 35.79 2.57
3669 5435 4.582869 AGCAATAGCACTTCTGATGTGAA 58.417 39.130 23.17 12.70 45.49 3.18
3678 5444 5.453587 GCACTTCTGATGTGAATTTTATCGC 59.546 40.000 23.17 4.29 37.60 4.58
3824 5592 2.184533 TGCCCTTCCGTCAAGATTCTA 58.815 47.619 0.00 0.00 33.29 2.10
3827 5595 3.432326 GCCCTTCCGTCAAGATTCTATGT 60.432 47.826 0.00 0.00 33.29 2.29
3857 5625 4.217550 AGGTCATTGGTTGTTATTTGACGG 59.782 41.667 0.00 0.00 35.48 4.79
3910 5678 0.926293 CCCTTACACATGGGACCCAT 59.074 55.000 21.22 21.22 46.37 4.00
3915 5683 0.332632 ACACATGGGACCCATCAAGG 59.667 55.000 24.08 14.60 43.15 3.61
3947 5715 6.982160 TCCTAAACTAGTCCAACTACAACA 57.018 37.500 0.00 0.00 0.00 3.33
3958 5726 6.381420 AGTCCAACTACAACATAGCAGAGTAT 59.619 38.462 0.00 0.00 0.00 2.12
4010 5778 0.561184 TTCTAGCCTAGCCTAGCCCA 59.439 55.000 2.79 0.00 35.78 5.36
4011 5779 0.113385 TCTAGCCTAGCCTAGCCCAG 59.887 60.000 2.79 0.00 35.78 4.45
4012 5780 1.534235 TAGCCTAGCCTAGCCCAGC 60.534 63.158 0.00 0.00 0.00 4.85
4013 5781 3.947459 GCCTAGCCTAGCCCAGCC 61.947 72.222 0.00 0.00 0.00 4.85
4014 5782 3.245346 CCTAGCCTAGCCCAGCCC 61.245 72.222 0.00 0.00 0.00 5.19
4018 5786 4.496336 GCCTAGCCCAGCCCACTG 62.496 72.222 0.00 0.00 44.05 3.66
4045 5813 0.322906 CCTCCTTCAACCTCAAGCCC 60.323 60.000 0.00 0.00 0.00 5.19
4055 5823 1.228367 CTCAAGCCCAAGCACCAGT 60.228 57.895 0.00 0.00 43.56 4.00
4056 5824 1.521450 CTCAAGCCCAAGCACCAGTG 61.521 60.000 0.00 0.00 43.56 3.66
4095 5863 1.002624 GCACCGGATCCTTTCACCA 60.003 57.895 9.46 0.00 0.00 4.17
4139 5907 8.304596 TCGTATTTATCCTCTACCAACATGATC 58.695 37.037 0.00 0.00 0.00 2.92
4149 5917 2.291153 ACCAACATGATCCCCAAGACTG 60.291 50.000 0.00 0.00 0.00 3.51
4152 5920 2.496297 ACATGATCCCCAAGACTGGAT 58.504 47.619 0.00 0.00 46.92 3.41
4192 5960 0.744874 CGTAGAGATTCGAGCCCCAA 59.255 55.000 0.00 0.00 0.00 4.12
4204 5972 2.754552 CGAGCCCCAAAGATGATGAAAA 59.245 45.455 0.00 0.00 0.00 2.29
4211 5979 4.142600 CCCAAAGATGATGAAAACGTCCTC 60.143 45.833 0.00 0.00 0.00 3.71
4212 5980 4.697352 CCAAAGATGATGAAAACGTCCTCT 59.303 41.667 0.00 0.00 0.00 3.69
4216 5984 4.712337 AGATGATGAAAACGTCCTCTACCT 59.288 41.667 0.00 0.00 0.00 3.08
4217 5985 5.892119 AGATGATGAAAACGTCCTCTACCTA 59.108 40.000 0.00 0.00 0.00 3.08
4229 5997 4.401837 GTCCTCTACCTAATCGAAGTTGGT 59.598 45.833 9.79 9.79 35.05 3.67
4266 6034 0.109342 CTGCCTCTGTTGACCACCTT 59.891 55.000 0.00 0.00 0.00 3.50
4288 6056 0.813210 CTCCTCCTTCTTGCGCCATC 60.813 60.000 4.18 0.00 0.00 3.51
4290 6058 1.078214 CTCCTTCTTGCGCCATCCA 60.078 57.895 4.18 0.00 0.00 3.41
4319 6087 2.069165 GCCACACCCTCCACTTCCTT 62.069 60.000 0.00 0.00 0.00 3.36
4338 6106 3.134792 GAGCGCACCCTCTCGAGA 61.135 66.667 15.70 15.70 0.00 4.04
4353 6121 3.506067 TCTCGAGATTTGTACACAGCTGA 59.494 43.478 23.35 2.49 0.00 4.26
4358 6126 0.105964 TTTGTACACAGCTGACGCCT 59.894 50.000 23.35 0.00 36.60 5.52
4377 6145 1.743958 CTAGTTCATGTCGAGGTCGGT 59.256 52.381 0.00 0.00 40.29 4.69
4378 6146 0.526662 AGTTCATGTCGAGGTCGGTC 59.473 55.000 0.00 0.00 40.29 4.79
4379 6147 0.458025 GTTCATGTCGAGGTCGGTCC 60.458 60.000 0.00 0.00 40.29 4.46
4380 6148 1.929806 TTCATGTCGAGGTCGGTCCG 61.930 60.000 4.39 4.39 41.99 4.79
4397 6179 1.274167 TCCGCGGTAAACTGTCATCTT 59.726 47.619 27.15 0.00 0.00 2.40
4447 6229 2.158066 TCCATATCCCGTAATGGACCCT 60.158 50.000 0.00 0.00 42.00 4.34
4448 6230 2.027192 CCATATCCCGTAATGGACCCTG 60.027 54.545 0.00 0.00 42.00 4.45
4502 6289 3.010027 TGGCATGTCCATTGTCTTCCTTA 59.990 43.478 4.93 0.00 40.72 2.69
4507 6294 5.319043 TGTCCATTGTCTTCCTTACCTTT 57.681 39.130 0.00 0.00 0.00 3.11
4518 6305 1.067776 CCTTACCTTTGACGACGCTCT 60.068 52.381 0.00 0.00 0.00 4.09
4520 6307 3.427243 CTTACCTTTGACGACGCTCTAG 58.573 50.000 0.00 0.00 0.00 2.43
4522 6309 1.068472 ACCTTTGACGACGCTCTAGTG 60.068 52.381 0.00 0.00 0.00 2.74
4571 6358 0.321653 ATTCGTCCTTGACAGCACCC 60.322 55.000 0.00 0.00 32.09 4.61
4573 6360 2.836154 GTCCTTGACAGCACCCCA 59.164 61.111 0.00 0.00 32.09 4.96
4592 6379 2.378634 CCTCCCCCAGGTCATGTCC 61.379 68.421 0.03 0.03 37.53 4.02
4600 6387 1.759445 CCAGGTCATGTCCGAGATTCT 59.241 52.381 3.20 0.00 0.00 2.40
4627 6416 1.584724 TCCACTTGGATCTCCTTCCC 58.415 55.000 0.00 0.00 39.78 3.97
4634 6423 1.010046 TGGATCTCCTTCCCAGACCAT 59.990 52.381 0.00 0.00 34.67 3.55
4660 6449 1.067084 CGAGATCATGCTCTGCCGT 59.933 57.895 3.26 0.00 32.71 5.68
4675 6464 3.418913 CGTTGCCGCCGTCAATGA 61.419 61.111 0.00 0.00 33.48 2.57
4688 6477 3.364864 CCGTCAATGAAAACATCGCTTCA 60.365 43.478 0.00 0.00 36.08 3.02
4726 6517 4.513777 ACCTCTGCGGTGTACTCA 57.486 55.556 0.00 0.00 46.80 3.41
4757 6548 3.441922 GCACAATCCTTTTCCCTCTTCTC 59.558 47.826 0.00 0.00 0.00 2.87
4769 6560 1.138568 CTCTTCTCCCATGCTCCCAT 58.861 55.000 0.00 0.00 0.00 4.00
4781 6572 0.833287 GCTCCCATGTGCCTTCTAGA 59.167 55.000 0.00 0.00 0.00 2.43
4782 6573 1.419387 GCTCCCATGTGCCTTCTAGAT 59.581 52.381 0.00 0.00 0.00 1.98
4808 6599 3.367743 TCGTGCTTCGCCCGTAGT 61.368 61.111 0.00 0.00 39.67 2.73
4832 6623 1.805945 CTACTGCTCGTTGGCGTCC 60.806 63.158 0.00 0.00 39.49 4.79
4840 6631 0.179067 TCGTTGGCGTCCTTGTTTCT 60.179 50.000 0.00 0.00 39.49 2.52
4868 6659 4.503314 GTTCCCCGTACCGCCTCG 62.503 72.222 0.00 0.00 0.00 4.63
4900 6691 1.414919 AGAGTTGAACGCACTACCCAA 59.585 47.619 1.24 0.00 0.00 4.12
4904 6695 0.180642 TGAACGCACTACCCAACCAA 59.819 50.000 0.00 0.00 0.00 3.67
4926 6721 1.065636 CAGTGCCATGTGTCTCCATCT 60.066 52.381 0.00 0.00 0.00 2.90
4938 6733 4.096532 GTGTCTCCATCTCGTGTATCTTCA 59.903 45.833 0.00 0.00 0.00 3.02
4968 6763 3.003480 GCGTCCTCTGCTTCTATTGTTT 58.997 45.455 0.00 0.00 0.00 2.83
5002 6811 0.031010 GAGAGGTATGGGGAGGGTGT 60.031 60.000 0.00 0.00 0.00 4.16
5059 6868 7.290014 TGAGGTGACTTGGCTTGAAGATATATA 59.710 37.037 0.00 0.00 44.43 0.86
5093 6904 2.302587 TTTTCTTGATGGGTCCCACC 57.697 50.000 14.57 3.06 35.80 4.61
5150 6961 8.260114 AGCAAAAATATTTTGGTTATCCAGGAG 58.740 33.333 14.04 0.00 45.22 3.69
5200 7011 5.988561 GGTAGAGTGATAGAAGAGCATTTGG 59.011 44.000 0.00 0.00 0.00 3.28
5259 7070 4.286808 AGCTGAAAATTAGGCAAAACCCAT 59.713 37.500 0.00 0.00 40.58 4.00
5393 7204 8.739039 CACAACTAGGTTTGGATCATATTCAAA 58.261 33.333 0.00 0.00 0.00 2.69
5437 7248 4.763073 TGAATCTATCTTGCTGACAGGTG 58.237 43.478 4.26 0.00 0.00 4.00
5507 7318 1.071699 TGCGGCTGAACCTTACTCTTT 59.928 47.619 0.00 0.00 35.61 2.52
5637 7448 3.603532 TCTGCAAAGGTTAGCTCATCTG 58.396 45.455 0.00 0.00 0.00 2.90
5639 7450 3.754965 TGCAAAGGTTAGCTCATCTGTT 58.245 40.909 0.00 0.00 0.00 3.16
5765 7576 7.870509 TGGATTCTCATCAACAATTAAGAGG 57.129 36.000 0.00 0.00 0.00 3.69
5860 7671 5.637006 AGAGCTGTCAGTTCTTAGTACTG 57.363 43.478 13.04 11.94 43.41 2.74
5862 7673 4.153411 AGCTGTCAGTTCTTAGTACTGGT 58.847 43.478 16.81 0.00 42.53 4.00
5997 7808 2.092103 TGGTTGTTTGGGCTCAACTAGT 60.092 45.455 0.00 0.00 42.15 2.57
6079 7891 9.832445 TTATATGTTTCTCATGTTCTTCCCTAC 57.168 33.333 0.00 0.00 37.91 3.18
6084 7896 6.777213 TTCTCATGTTCTTCCCTACTAGTC 57.223 41.667 0.00 0.00 0.00 2.59
6095 7907 4.670765 TCCCTACTAGTCGATAATTCCCC 58.329 47.826 0.00 0.00 0.00 4.81
6118 7935 8.981659 CCCCTTTCTCTTAAAATCCATGTTAAT 58.018 33.333 0.00 0.00 0.00 1.40
6412 8229 3.254657 CCCAGCCGTCTTGACAAAAATTA 59.745 43.478 1.59 0.00 0.00 1.40
6418 8235 4.226761 CGTCTTGACAAAAATTACCCTGC 58.773 43.478 1.59 0.00 0.00 4.85
6426 8243 4.653801 ACAAAAATTACCCTGCCAAGAAGT 59.346 37.500 0.00 0.00 0.00 3.01
6452 8269 7.362802 ACTTTAGGTGATACTCCCTATGTTC 57.637 40.000 0.00 0.00 33.44 3.18
6453 8270 6.326843 ACTTTAGGTGATACTCCCTATGTTCC 59.673 42.308 0.00 0.00 33.44 3.62
6454 8271 4.561254 AGGTGATACTCCCTATGTTCCT 57.439 45.455 0.00 0.00 0.00 3.36
6455 8272 5.681494 AGGTGATACTCCCTATGTTCCTA 57.319 43.478 0.00 0.00 0.00 2.94
6456 8273 6.039415 AGGTGATACTCCCTATGTTCCTAA 57.961 41.667 0.00 0.00 0.00 2.69
6457 8274 6.449956 AGGTGATACTCCCTATGTTCCTAAA 58.550 40.000 0.00 0.00 0.00 1.85
6458 8275 7.082972 AGGTGATACTCCCTATGTTCCTAAAT 58.917 38.462 0.00 0.00 0.00 1.40
6459 8276 8.239478 AGGTGATACTCCCTATGTTCCTAAATA 58.761 37.037 0.00 0.00 0.00 1.40
6460 8277 9.047947 GGTGATACTCCCTATGTTCCTAAATAT 57.952 37.037 0.00 0.00 0.00 1.28
6466 8283 9.102453 ACTCCCTATGTTCCTAAATATAAGACC 57.898 37.037 0.00 0.00 0.00 3.85
6467 8284 9.327731 CTCCCTATGTTCCTAAATATAAGACCT 57.672 37.037 0.00 0.00 0.00 3.85
6468 8285 9.684702 TCCCTATGTTCCTAAATATAAGACCTT 57.315 33.333 0.00 0.00 0.00 3.50
6486 8303 7.979786 AGACCTTAAAGAGATTCCACTATGA 57.020 36.000 0.00 0.00 0.00 2.15
6487 8304 8.380742 AGACCTTAAAGAGATTCCACTATGAA 57.619 34.615 0.00 0.00 0.00 2.57
6488 8305 8.997734 AGACCTTAAAGAGATTCCACTATGAAT 58.002 33.333 0.00 0.00 37.66 2.57
6494 8311 8.425577 AAAGAGATTCCACTATGAATAACACG 57.574 34.615 0.00 0.00 35.15 4.49
6495 8312 5.986135 AGAGATTCCACTATGAATAACACGC 59.014 40.000 0.00 0.00 35.15 5.34
6496 8313 4.745125 AGATTCCACTATGAATAACACGCG 59.255 41.667 3.53 3.53 35.15 6.01
6497 8314 2.816689 TCCACTATGAATAACACGCGG 58.183 47.619 12.47 1.27 0.00 6.46
6498 8315 2.427812 TCCACTATGAATAACACGCGGA 59.572 45.455 12.47 0.00 0.00 5.54
6499 8316 3.069016 TCCACTATGAATAACACGCGGAT 59.931 43.478 12.47 0.00 0.00 4.18
6500 8317 3.184379 CCACTATGAATAACACGCGGATG 59.816 47.826 12.47 2.37 0.00 3.51
6501 8318 3.802139 CACTATGAATAACACGCGGATGT 59.198 43.478 12.47 3.18 0.00 3.06
6502 8319 4.979815 CACTATGAATAACACGCGGATGTA 59.020 41.667 12.47 0.00 30.75 2.29
6503 8320 5.633601 CACTATGAATAACACGCGGATGTAT 59.366 40.000 12.47 0.00 30.75 2.29
6504 8321 6.804783 CACTATGAATAACACGCGGATGTATA 59.195 38.462 12.47 2.99 30.75 1.47
6505 8322 7.488150 CACTATGAATAACACGCGGATGTATAT 59.512 37.037 12.47 5.12 30.75 0.86
6506 8323 8.680001 ACTATGAATAACACGCGGATGTATATA 58.320 33.333 12.47 0.00 30.75 0.86
6507 8324 7.987268 ATGAATAACACGCGGATGTATATAG 57.013 36.000 12.47 0.00 30.75 1.31
6508 8325 7.148355 TGAATAACACGCGGATGTATATAGA 57.852 36.000 12.47 0.00 30.75 1.98
6509 8326 7.025365 TGAATAACACGCGGATGTATATAGAC 58.975 38.462 12.47 0.00 30.75 2.59
6510 8327 4.841443 AACACGCGGATGTATATAGACA 57.159 40.909 12.47 2.07 30.75 3.41
6511 8328 5.386958 AACACGCGGATGTATATAGACAT 57.613 39.130 12.70 12.70 42.82 3.06
6512 8329 6.505044 AACACGCGGATGTATATAGACATA 57.495 37.500 12.82 0.00 40.18 2.29
6513 8330 6.694877 ACACGCGGATGTATATAGACATAT 57.305 37.500 12.82 0.00 40.18 1.78
6514 8331 7.096884 ACACGCGGATGTATATAGACATATT 57.903 36.000 12.82 0.00 40.18 1.28
6515 8332 7.544622 ACACGCGGATGTATATAGACATATTT 58.455 34.615 12.82 0.00 40.18 1.40
6516 8333 8.033038 ACACGCGGATGTATATAGACATATTTT 58.967 33.333 12.82 0.00 40.18 1.82
6517 8334 9.511144 CACGCGGATGTATATAGACATATTTTA 57.489 33.333 12.82 0.00 40.18 1.52
6518 8335 9.731819 ACGCGGATGTATATAGACATATTTTAG 57.268 33.333 12.82 5.97 40.18 1.85
6519 8336 9.946165 CGCGGATGTATATAGACATATTTTAGA 57.054 33.333 12.82 0.00 40.18 2.10
6540 8357 9.677567 TTTAGACTGTAAATTCACTCATTTTGC 57.322 29.630 0.00 0.00 0.00 3.68
6541 8358 7.516198 AGACTGTAAATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 0.00 3.91
6542 8359 7.945134 AGACTGTAAATTCACTCATTTTGCTT 58.055 30.769 0.00 0.00 0.00 3.91
6543 8360 7.864379 AGACTGTAAATTCACTCATTTTGCTTG 59.136 33.333 0.00 0.00 0.00 4.01
6544 8361 6.421801 ACTGTAAATTCACTCATTTTGCTTGC 59.578 34.615 0.00 0.00 0.00 4.01
6545 8362 6.279123 TGTAAATTCACTCATTTTGCTTGCA 58.721 32.000 0.00 0.00 0.00 4.08
6546 8363 6.930164 TGTAAATTCACTCATTTTGCTTGCAT 59.070 30.769 0.00 0.00 0.00 3.96
6547 8364 5.856126 AATTCACTCATTTTGCTTGCATG 57.144 34.783 0.00 0.00 0.00 4.06
6548 8365 4.325028 TTCACTCATTTTGCTTGCATGT 57.675 36.364 1.14 0.00 0.00 3.21
6549 8366 5.450592 TTCACTCATTTTGCTTGCATGTA 57.549 34.783 1.14 0.00 0.00 2.29
6550 8367 5.050644 TCACTCATTTTGCTTGCATGTAG 57.949 39.130 1.14 0.00 0.00 2.74
6551 8368 4.520111 TCACTCATTTTGCTTGCATGTAGT 59.480 37.500 1.14 0.00 0.00 2.73
6552 8369 4.855388 CACTCATTTTGCTTGCATGTAGTC 59.145 41.667 1.14 0.00 0.00 2.59
6553 8370 4.082571 ACTCATTTTGCTTGCATGTAGTCC 60.083 41.667 1.14 0.00 0.00 3.85
6554 8371 3.825585 TCATTTTGCTTGCATGTAGTCCA 59.174 39.130 1.14 0.00 0.00 4.02
6555 8372 4.463539 TCATTTTGCTTGCATGTAGTCCAT 59.536 37.500 1.14 0.00 0.00 3.41
6556 8373 5.651576 TCATTTTGCTTGCATGTAGTCCATA 59.348 36.000 1.14 0.00 30.71 2.74
6557 8374 5.565592 TTTTGCTTGCATGTAGTCCATAG 57.434 39.130 1.14 0.00 30.71 2.23
6558 8375 3.912496 TGCTTGCATGTAGTCCATAGT 57.088 42.857 1.14 0.00 30.71 2.12
6559 8376 3.534554 TGCTTGCATGTAGTCCATAGTG 58.465 45.455 1.14 0.00 30.71 2.74
6560 8377 2.874701 GCTTGCATGTAGTCCATAGTGG 59.125 50.000 1.14 0.00 39.43 4.00
6561 8378 3.432186 GCTTGCATGTAGTCCATAGTGGA 60.432 47.826 1.14 0.00 45.98 4.02
6594 8411 9.868160 AAAAGGTCTTATATTTAGGAATGGAGG 57.132 33.333 0.00 0.00 0.00 4.30
6595 8412 7.575499 AGGTCTTATATTTAGGAATGGAGGG 57.425 40.000 0.00 0.00 0.00 4.30
6596 8413 7.321530 AGGTCTTATATTTAGGAATGGAGGGA 58.678 38.462 0.00 0.00 0.00 4.20
6597 8414 7.459444 AGGTCTTATATTTAGGAATGGAGGGAG 59.541 40.741 0.00 0.00 0.00 4.30
6598 8415 7.237887 GGTCTTATATTTAGGAATGGAGGGAGT 59.762 40.741 0.00 0.00 0.00 3.85
6599 8416 9.322769 GTCTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
6600 8417 9.322769 TCTTATATTTAGGAATGGAGGGAGTAC 57.677 37.037 0.00 0.00 0.00 2.73
6608 8425 6.842676 AGGAATGGAGGGAGTACAATATTTC 58.157 40.000 0.00 0.00 0.00 2.17
6609 8426 6.389869 AGGAATGGAGGGAGTACAATATTTCA 59.610 38.462 0.00 0.00 0.00 2.69
6739 8556 9.425893 CATATTTTTAATACTCACGAGCTTGTG 57.574 33.333 25.79 25.79 41.28 3.33
6776 8593 8.941977 TGCAATAACTTACCAACACAATACTAG 58.058 33.333 0.00 0.00 0.00 2.57
6780 8597 6.930068 ACTTACCAACACAATACTAGGAGT 57.070 37.500 0.00 0.00 0.00 3.85
6932 8762 0.734889 ACAAGCACGCAAGGATATGC 59.265 50.000 0.00 0.00 46.39 3.14
6968 8798 2.539302 TCATCAGAGTCCCACATGTCA 58.461 47.619 0.00 0.00 0.00 3.58
6992 8822 8.999431 TCAGTTTGTTTTCCTCTATGTCAATAC 58.001 33.333 0.00 0.00 0.00 1.89
7045 8875 6.875195 TGGTATTGTTTACTAACGCTTTAGCT 59.125 34.615 9.73 0.00 38.71 3.32
7066 8896 1.211457 ACAATGCAGGGAGGTCATCTC 59.789 52.381 0.00 0.00 41.71 2.75
7130 8960 3.131240 ACGCATGCCGAAATTTCTTAC 57.869 42.857 13.15 5.93 41.02 2.34
7158 8988 1.353358 TGTAGGGGACGACTTCTCTCA 59.647 52.381 0.00 0.00 36.83 3.27
7163 8993 2.104170 GGGACGACTTCTCTCATCCTT 58.896 52.381 0.00 0.00 0.00 3.36
7208 9038 1.153568 ATCACACGCGGTCTCATGG 60.154 57.895 12.47 0.00 0.00 3.66
7249 9079 4.517285 ACATGAAGCAAGACCGATACATT 58.483 39.130 0.00 0.00 0.00 2.71
7290 9120 5.507149 GCACCACTGTCACATGATTTGTTTA 60.507 40.000 0.00 0.00 36.00 2.01
7329 9159 6.308766 TGCGTGAATATGTCTCATTCATATCG 59.691 38.462 1.49 2.68 42.63 2.92
7486 9323 7.977904 TGCAGTCATCAAGTTCTTTATACATG 58.022 34.615 0.00 0.00 0.00 3.21
7488 9325 8.119226 GCAGTCATCAAGTTCTTTATACATGTC 58.881 37.037 0.00 0.00 0.00 3.06
7502 9339 0.247460 CATGTCCGTGAGAGGAAGCA 59.753 55.000 0.00 0.00 42.77 3.91
7506 9343 0.603569 TCCGTGAGAGGAAGCAACTC 59.396 55.000 0.00 0.00 37.36 3.01
7511 9348 2.050144 TGAGAGGAAGCAACTCTGGTT 58.950 47.619 9.20 0.00 44.89 3.67
7513 9350 3.646162 TGAGAGGAAGCAACTCTGGTTTA 59.354 43.478 9.20 0.00 44.89 2.01
7522 9359 2.742053 CAACTCTGGTTTACATGGACCG 59.258 50.000 0.00 0.07 38.81 4.79
7605 9444 0.249120 TTGCACATACTCTCACCCCG 59.751 55.000 0.00 0.00 0.00 5.73
7630 9469 3.513909 ATGCATGCACACATACCCTAT 57.486 42.857 25.37 0.00 33.67 2.57
7641 9480 6.647229 CACACATACCCTATCATATGAGCAT 58.353 40.000 11.78 0.00 33.73 3.79
7644 9483 7.181665 ACACATACCCTATCATATGAGCATCTT 59.818 37.037 11.78 0.00 34.92 2.40
7645 9484 8.045507 CACATACCCTATCATATGAGCATCTTT 58.954 37.037 11.78 0.00 34.92 2.52
7658 9497 4.282957 TGAGCATCTTTGAGAGACTGAGTT 59.717 41.667 0.00 0.00 37.17 3.01
7674 9513 2.271800 GAGTTGGCAGGTAGATTGACG 58.728 52.381 0.00 0.00 0.00 4.35
7678 9517 1.291132 GGCAGGTAGATTGACGAAGC 58.709 55.000 0.00 0.00 0.00 3.86
7700 9539 3.458872 CGCAGGAGCCTTGTTATCA 57.541 52.632 0.00 0.00 37.52 2.15
7703 9542 2.289002 CGCAGGAGCCTTGTTATCAATC 59.711 50.000 0.00 0.00 37.52 2.67
7726 9565 2.057922 AGTGTCACCTCCCACTGAATT 58.942 47.619 0.00 0.00 40.30 2.17
7728 9567 3.261897 AGTGTCACCTCCCACTGAATTAG 59.738 47.826 0.00 0.00 40.30 1.73
7735 9574 5.036916 ACCTCCCACTGAATTAGTATTCCA 58.963 41.667 0.00 0.00 39.56 3.53
7864 9703 6.206829 GGTAGCCTTAAATAAGAATCGGCAAT 59.793 38.462 1.75 0.00 35.33 3.56
7867 9706 6.321181 AGCCTTAAATAAGAATCGGCAATGAA 59.679 34.615 1.75 0.00 35.33 2.57
7896 9736 2.365768 GACCCCCTCCCTCACTCC 60.366 72.222 0.00 0.00 0.00 3.85
7938 9778 5.408909 TGTTACTCTTCTCACAGACTAGTCG 59.591 44.000 17.07 13.93 34.09 4.18
8027 9867 5.066968 TCAACCAAACAAAACCACTTCTC 57.933 39.130 0.00 0.00 0.00 2.87
8079 9919 5.712299 GTGGAACAATGGGACAAACTTCCA 61.712 45.833 0.00 0.00 44.16 3.53
8118 9958 2.359568 CCATCCACATCCCCCAAATTCT 60.360 50.000 0.00 0.00 0.00 2.40
8119 9959 3.377573 CATCCACATCCCCCAAATTCTT 58.622 45.455 0.00 0.00 0.00 2.52
8120 9960 2.818921 TCCACATCCCCCAAATTCTTG 58.181 47.619 0.00 0.00 0.00 3.02
8121 9961 2.381618 TCCACATCCCCCAAATTCTTGA 59.618 45.455 0.00 0.00 34.14 3.02
8122 9962 2.497273 CCACATCCCCCAAATTCTTGAC 59.503 50.000 0.00 0.00 34.14 3.18
8123 9963 2.497273 CACATCCCCCAAATTCTTGACC 59.503 50.000 0.00 0.00 34.14 4.02
8124 9964 2.110578 CATCCCCCAAATTCTTGACCC 58.889 52.381 0.00 0.00 34.14 4.46
8125 9965 0.039035 TCCCCCAAATTCTTGACCCG 59.961 55.000 0.00 0.00 34.14 5.28
8126 9966 0.039035 CCCCCAAATTCTTGACCCGA 59.961 55.000 0.00 0.00 34.14 5.14
8127 9967 1.341976 CCCCCAAATTCTTGACCCGAT 60.342 52.381 0.00 0.00 34.14 4.18
8128 9968 2.024414 CCCCAAATTCTTGACCCGATC 58.976 52.381 0.00 0.00 34.14 3.69
8129 9969 2.024414 CCCAAATTCTTGACCCGATCC 58.976 52.381 0.00 0.00 34.14 3.36
8130 9970 2.620367 CCCAAATTCTTGACCCGATCCA 60.620 50.000 0.00 0.00 34.14 3.41
8131 9971 3.088532 CCAAATTCTTGACCCGATCCAA 58.911 45.455 0.00 0.00 34.14 3.53
8132 9972 3.509575 CCAAATTCTTGACCCGATCCAAA 59.490 43.478 0.00 0.00 34.14 3.28
8133 9973 4.380867 CCAAATTCTTGACCCGATCCAAAG 60.381 45.833 0.00 0.00 34.14 2.77
8134 9974 2.489938 TTCTTGACCCGATCCAAAGG 57.510 50.000 0.00 0.00 0.00 3.11
8135 9975 0.035439 TCTTGACCCGATCCAAAGGC 60.035 55.000 0.00 0.00 0.00 4.35
8136 9976 1.369091 CTTGACCCGATCCAAAGGCG 61.369 60.000 0.00 0.00 0.00 5.52
8137 9977 2.119484 TTGACCCGATCCAAAGGCGT 62.119 55.000 0.00 0.00 0.00 5.68
8138 9978 1.376812 GACCCGATCCAAAGGCGTT 60.377 57.895 0.00 0.00 0.00 4.84
8139 9979 0.958876 GACCCGATCCAAAGGCGTTT 60.959 55.000 0.00 0.00 0.00 3.60
8140 9980 1.241315 ACCCGATCCAAAGGCGTTTG 61.241 55.000 21.96 21.96 42.49 2.93
8141 9981 0.958382 CCCGATCCAAAGGCGTTTGA 60.958 55.000 28.52 16.81 45.22 2.69
8142 9982 0.878416 CCGATCCAAAGGCGTTTGAA 59.122 50.000 28.52 13.26 45.22 2.69
8143 9983 1.268352 CCGATCCAAAGGCGTTTGAAA 59.732 47.619 28.52 18.03 45.22 2.69
8144 9984 2.287909 CCGATCCAAAGGCGTTTGAAAA 60.288 45.455 28.52 15.90 45.22 2.29
8145 9985 3.574614 CGATCCAAAGGCGTTTGAAAAT 58.425 40.909 28.52 19.13 45.22 1.82
8146 9986 3.608073 CGATCCAAAGGCGTTTGAAAATC 59.392 43.478 28.52 23.51 45.22 2.17
8147 9987 3.006659 TCCAAAGGCGTTTGAAAATCG 57.993 42.857 28.52 13.58 45.22 3.34
8148 9988 2.359531 TCCAAAGGCGTTTGAAAATCGT 59.640 40.909 28.52 0.00 45.22 3.73
8149 9989 2.724174 CCAAAGGCGTTTGAAAATCGTC 59.276 45.455 28.52 0.00 45.22 4.20
8153 9993 3.262135 GGCGTTTGAAAATCGTCTTCA 57.738 42.857 0.00 0.00 40.22 3.02
8154 9994 2.971261 GGCGTTTGAAAATCGTCTTCAC 59.029 45.455 0.00 0.00 40.22 3.18
8155 9995 3.547214 GGCGTTTGAAAATCGTCTTCACA 60.547 43.478 0.00 0.00 40.22 3.58
8156 9996 3.417645 GCGTTTGAAAATCGTCTTCACAC 59.582 43.478 0.00 0.00 40.87 3.82
8157 9997 3.653113 CGTTTGAAAATCGTCTTCACACG 59.347 43.478 15.46 15.46 45.14 4.49
8158 9998 2.941891 TGAAAATCGTCTTCACACGC 57.058 45.000 0.00 0.00 39.74 5.34
8159 9999 1.191425 TGAAAATCGTCTTCACACGCG 59.809 47.619 3.53 3.53 39.74 6.01
8160 10000 0.110823 AAAATCGTCTTCACACGCGC 60.111 50.000 5.73 0.00 39.74 6.86
8161 10001 1.897398 AAATCGTCTTCACACGCGCC 61.897 55.000 5.73 0.00 39.74 6.53
8162 10002 3.567478 ATCGTCTTCACACGCGCCA 62.567 57.895 5.73 0.00 39.74 5.69
8163 10003 2.835701 ATCGTCTTCACACGCGCCAT 62.836 55.000 5.73 0.00 39.74 4.40
8164 10004 2.667318 CGTCTTCACACGCGCCATT 61.667 57.895 5.73 0.00 31.96 3.16
8165 10005 1.154413 GTCTTCACACGCGCCATTG 60.154 57.895 5.73 0.00 0.00 2.82
8166 10006 1.301322 TCTTCACACGCGCCATTGA 60.301 52.632 5.73 0.00 0.00 2.57
8167 10007 1.154413 CTTCACACGCGCCATTGAC 60.154 57.895 5.73 0.00 0.00 3.18
8168 10008 1.840630 CTTCACACGCGCCATTGACA 61.841 55.000 5.73 0.00 0.00 3.58
8169 10009 1.440145 TTCACACGCGCCATTGACAA 61.440 50.000 5.73 0.00 0.00 3.18
8170 10010 1.440850 CACACGCGCCATTGACAAG 60.441 57.895 5.73 0.00 0.00 3.16
8171 10011 2.502510 CACGCGCCATTGACAAGC 60.503 61.111 5.73 0.00 0.00 4.01
8175 10015 3.736100 CGCCATTGACAAGCGCCA 61.736 61.111 2.29 0.00 43.72 5.69
8176 10016 2.887360 GCCATTGACAAGCGCCAT 59.113 55.556 2.29 0.00 0.00 4.40
8177 10017 1.216178 GCCATTGACAAGCGCCATT 59.784 52.632 2.29 0.00 0.00 3.16
8178 10018 1.079875 GCCATTGACAAGCGCCATTG 61.080 55.000 2.29 5.68 36.22 2.82
8179 10019 1.079875 CCATTGACAAGCGCCATTGC 61.080 55.000 2.29 0.38 33.28 3.56
8180 10020 1.079875 CATTGACAAGCGCCATTGCC 61.080 55.000 2.29 0.00 33.28 4.52
8181 10021 1.534336 ATTGACAAGCGCCATTGCCA 61.534 50.000 2.29 0.00 33.28 4.92
8182 10022 2.126346 GACAAGCGCCATTGCCAC 60.126 61.111 2.29 0.00 33.28 5.01
8183 10023 3.631487 GACAAGCGCCATTGCCACC 62.631 63.158 2.29 0.00 33.28 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.422073 TCAACAGAAAGAGCAGGAAGAA 57.578 40.909 0.00 0.00 0.00 2.52
13 14 4.949856 AGTTTTCAACAGAAAGAGCAGGAA 59.050 37.500 0.00 0.00 33.20 3.36
35 36 1.081641 CGAGCAAACAAGCTGCCAG 60.082 57.895 0.00 0.00 46.75 4.85
83 84 1.597663 CGGTCGCAGTCCCATAATTTC 59.402 52.381 0.00 0.00 30.10 2.17
84 85 1.663695 CGGTCGCAGTCCCATAATTT 58.336 50.000 0.00 0.00 30.10 1.82
102 104 2.010817 GCAAAGAACAACGCTGCCG 61.011 57.895 0.00 0.00 41.14 5.69
109 111 4.494484 AGAAGTTGGTTGCAAAGAACAAC 58.506 39.130 20.71 20.71 45.30 3.32
117 119 2.426738 CAGTGGAAGAAGTTGGTTGCAA 59.573 45.455 0.00 0.00 0.00 4.08
123 125 3.815809 TGGTTACAGTGGAAGAAGTTGG 58.184 45.455 0.00 0.00 0.00 3.77
153 155 4.402793 GCAGAGAACCATCTTGAGTAGGTA 59.597 45.833 0.00 0.00 35.54 3.08
154 156 3.196685 GCAGAGAACCATCTTGAGTAGGT 59.803 47.826 0.00 0.00 35.54 3.08
156 158 4.081752 ACTGCAGAGAACCATCTTGAGTAG 60.082 45.833 23.35 0.00 35.54 2.57
158 160 2.636893 ACTGCAGAGAACCATCTTGAGT 59.363 45.455 23.35 0.00 35.54 3.41
294 296 1.755179 AAATCGGCCTTCACATCCAG 58.245 50.000 0.00 0.00 0.00 3.86
488 509 5.438761 AATTTTTCCTGCAGTGTCAGTAC 57.561 39.130 13.81 0.00 32.32 2.73
492 513 4.278170 CACCTAATTTTTCCTGCAGTGTCA 59.722 41.667 13.81 0.00 0.00 3.58
542 563 8.455903 TTGTTCCCTGAATCTTCATATCAATC 57.544 34.615 0.00 0.00 36.46 2.67
543 564 8.689972 GTTTGTTCCCTGAATCTTCATATCAAT 58.310 33.333 0.00 0.00 36.46 2.57
554 575 7.272037 TCTTTAGTTGTTTGTTCCCTGAATC 57.728 36.000 0.00 0.00 0.00 2.52
580 601 2.602257 TGTCCGATGCGATCAATCTT 57.398 45.000 0.00 0.00 0.00 2.40
581 602 2.159043 AGTTGTCCGATGCGATCAATCT 60.159 45.455 0.00 0.00 0.00 2.40
582 603 2.205074 AGTTGTCCGATGCGATCAATC 58.795 47.619 0.00 0.00 0.00 2.67
583 604 2.159043 AGAGTTGTCCGATGCGATCAAT 60.159 45.455 0.00 0.00 0.00 2.57
584 605 1.204704 AGAGTTGTCCGATGCGATCAA 59.795 47.619 0.00 0.00 0.00 2.57
585 606 0.817654 AGAGTTGTCCGATGCGATCA 59.182 50.000 0.00 0.00 0.00 2.92
586 607 1.203928 CAGAGTTGTCCGATGCGATC 58.796 55.000 0.00 0.00 0.00 3.69
587 608 0.179100 CCAGAGTTGTCCGATGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
588 609 1.215382 CCAGAGTTGTCCGATGCGA 59.785 57.895 0.00 0.00 0.00 5.10
589 610 1.811266 CCCAGAGTTGTCCGATGCG 60.811 63.158 0.00 0.00 0.00 4.73
590 611 0.460987 CTCCCAGAGTTGTCCGATGC 60.461 60.000 0.00 0.00 0.00 3.91
595 748 0.036858 GCTCACTCCCAGAGTTGTCC 60.037 60.000 0.00 0.00 41.37 4.02
620 773 2.231478 AGATGTAATATGGGTCGAGCCG 59.769 50.000 27.33 0.00 38.44 5.52
631 784 5.769484 AGTGACGGTCGAAGATGTAATAT 57.231 39.130 3.34 0.00 40.67 1.28
636 789 1.067776 GGAAGTGACGGTCGAAGATGT 60.068 52.381 3.34 0.00 40.67 3.06
638 791 0.170561 CGGAAGTGACGGTCGAAGAT 59.829 55.000 3.34 0.00 40.67 2.40
640 793 1.285023 ACGGAAGTGACGGTCGAAG 59.715 57.895 3.34 0.00 46.97 3.79
661 814 0.677731 TCTTGCCCTTGCCATCTTCG 60.678 55.000 0.00 0.00 36.33 3.79
679 832 3.319122 AGAAAATTCACCCACAACTGCTC 59.681 43.478 0.00 0.00 0.00 4.26
684 837 2.621526 ACGGAGAAAATTCACCCACAAC 59.378 45.455 4.37 0.00 34.89 3.32
685 838 2.938838 ACGGAGAAAATTCACCCACAA 58.061 42.857 4.37 0.00 34.89 3.33
686 839 2.649531 ACGGAGAAAATTCACCCACA 57.350 45.000 4.37 0.00 34.89 4.17
707 860 4.323792 CCTCTCCTGTTGAATCAAAGGCTA 60.324 45.833 14.95 7.92 0.00 3.93
708 861 3.560882 CCTCTCCTGTTGAATCAAAGGCT 60.561 47.826 14.95 0.00 0.00 4.58
709 862 2.751806 CCTCTCCTGTTGAATCAAAGGC 59.248 50.000 14.95 0.00 0.00 4.35
710 863 4.026356 ACCTCTCCTGTTGAATCAAAGG 57.974 45.455 14.10 14.10 0.00 3.11
711 864 5.065914 TCAACCTCTCCTGTTGAATCAAAG 58.934 41.667 0.00 0.00 46.58 2.77
712 865 5.047566 TCAACCTCTCCTGTTGAATCAAA 57.952 39.130 0.00 0.00 46.58 2.69
732 1532 4.986587 CGCGACCGTTGACCGTCA 62.987 66.667 0.00 0.00 33.66 4.35
799 1703 1.792057 CGTCGTTGATTGCGTTGCC 60.792 57.895 0.00 0.00 0.00 4.52
800 1704 2.417553 GCGTCGTTGATTGCGTTGC 61.418 57.895 0.00 0.00 0.00 4.17
801 1705 0.655915 TTGCGTCGTTGATTGCGTTG 60.656 50.000 0.00 0.00 0.00 4.10
832 1948 2.483197 TTGCCTGTGCTGTGCTGTG 61.483 57.895 0.00 0.00 38.71 3.66
833 1949 2.124193 TTGCCTGTGCTGTGCTGT 60.124 55.556 0.00 0.00 38.71 4.40
834 1950 2.333938 GTTGCCTGTGCTGTGCTG 59.666 61.111 0.00 0.00 38.71 4.41
835 1951 3.282157 CGTTGCCTGTGCTGTGCT 61.282 61.111 0.00 0.00 38.71 4.40
836 1952 3.585990 ACGTTGCCTGTGCTGTGC 61.586 61.111 0.00 0.00 38.71 4.57
837 1953 2.328989 CACGTTGCCTGTGCTGTG 59.671 61.111 0.00 0.00 38.71 3.66
842 1958 4.671549 CAGCGCACGTTGCCTGTG 62.672 66.667 11.47 0.00 41.12 3.66
863 1979 0.391597 CGAGCTTTTATAGGGGCCGA 59.608 55.000 0.00 0.00 0.00 5.54
888 2004 2.757077 GTAGGTGGCTGGCTGGTT 59.243 61.111 2.00 0.00 0.00 3.67
906 2022 0.459411 GTGTTGGTGTTGGTGTTGGC 60.459 55.000 0.00 0.00 0.00 4.52
908 2024 0.891373 TGGTGTTGGTGTTGGTGTTG 59.109 50.000 0.00 0.00 0.00 3.33
909 2025 1.273886 GTTGGTGTTGGTGTTGGTGTT 59.726 47.619 0.00 0.00 0.00 3.32
910 2026 0.892063 GTTGGTGTTGGTGTTGGTGT 59.108 50.000 0.00 0.00 0.00 4.16
911 2027 0.891373 TGTTGGTGTTGGTGTTGGTG 59.109 50.000 0.00 0.00 0.00 4.17
912 2028 0.892063 GTGTTGGTGTTGGTGTTGGT 59.108 50.000 0.00 0.00 0.00 3.67
913 2029 0.174617 GGTGTTGGTGTTGGTGTTGG 59.825 55.000 0.00 0.00 0.00 3.77
914 2030 0.891373 TGGTGTTGGTGTTGGTGTTG 59.109 50.000 0.00 0.00 0.00 3.33
915 2031 0.892063 GTGGTGTTGGTGTTGGTGTT 59.108 50.000 0.00 0.00 0.00 3.32
916 2032 0.968393 GGTGGTGTTGGTGTTGGTGT 60.968 55.000 0.00 0.00 0.00 4.16
917 2033 0.967887 TGGTGGTGTTGGTGTTGGTG 60.968 55.000 0.00 0.00 0.00 4.17
918 2034 0.251832 TTGGTGGTGTTGGTGTTGGT 60.252 50.000 0.00 0.00 0.00 3.67
919 2035 0.459489 CTTGGTGGTGTTGGTGTTGG 59.541 55.000 0.00 0.00 0.00 3.77
920 2036 1.134175 GACTTGGTGGTGTTGGTGTTG 59.866 52.381 0.00 0.00 0.00 3.33
921 2037 1.470051 GACTTGGTGGTGTTGGTGTT 58.530 50.000 0.00 0.00 0.00 3.32
922 2038 0.746563 CGACTTGGTGGTGTTGGTGT 60.747 55.000 0.00 0.00 0.00 4.16
923 2039 0.462937 TCGACTTGGTGGTGTTGGTG 60.463 55.000 0.00 0.00 0.00 4.17
924 2040 0.463116 GTCGACTTGGTGGTGTTGGT 60.463 55.000 8.70 0.00 0.00 3.67
925 2041 1.495584 CGTCGACTTGGTGGTGTTGG 61.496 60.000 14.70 0.00 0.00 3.77
926 2042 1.931551 CGTCGACTTGGTGGTGTTG 59.068 57.895 14.70 0.00 0.00 3.33
927 2043 1.885850 GCGTCGACTTGGTGGTGTT 60.886 57.895 14.70 0.00 0.00 3.32
928 2044 2.279918 GCGTCGACTTGGTGGTGT 60.280 61.111 14.70 0.00 0.00 4.16
965 2084 0.595095 CACCAAAGCTTGTCTGGCTC 59.405 55.000 14.39 0.00 39.30 4.70
1200 2331 7.817418 ACTCTACAAAACTATCCTGCAAAAA 57.183 32.000 0.00 0.00 0.00 1.94
1201 2332 7.817418 AACTCTACAAAACTATCCTGCAAAA 57.183 32.000 0.00 0.00 0.00 2.44
1202 2333 7.817418 AAACTCTACAAAACTATCCTGCAAA 57.183 32.000 0.00 0.00 0.00 3.68
1203 2334 7.817418 AAAACTCTACAAAACTATCCTGCAA 57.183 32.000 0.00 0.00 0.00 4.08
1204 2335 7.817418 AAAAACTCTACAAAACTATCCTGCA 57.183 32.000 0.00 0.00 0.00 4.41
1246 2377 9.817809 ACACTCGAAAATACATCTACATACATT 57.182 29.630 0.00 0.00 0.00 2.71
1260 2391 6.446781 ACGAATCCTCTACACTCGAAAATA 57.553 37.500 0.00 0.00 33.81 1.40
1308 2450 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1335 2477 6.044682 ACGGGGACTAATATTTTGAACTACG 58.955 40.000 0.00 0.00 0.00 3.51
1339 2481 6.149807 TGTGAACGGGGACTAATATTTTGAAC 59.850 38.462 0.00 0.00 0.00 3.18
1357 2499 5.107913 CCTTACATTTGTGCATTTGTGAACG 60.108 40.000 0.00 0.00 0.00 3.95
1381 2525 0.163146 GAGCAAACGTACGGAGTTGC 59.837 55.000 30.24 30.24 37.78 4.17
1387 2531 1.941476 GCAGACGAGCAAACGTACGG 61.941 60.000 21.06 2.64 46.52 4.02
1388 2532 1.002250 AGCAGACGAGCAAACGTACG 61.002 55.000 15.01 15.01 46.52 3.67
1398 2542 7.571026 CATTTTTATATGAAGGAGCAGACGAG 58.429 38.462 0.00 0.00 0.00 4.18
1401 2545 7.031226 TGCATTTTTATATGAAGGAGCAGAC 57.969 36.000 0.00 0.00 0.00 3.51
1509 2654 8.631480 TGGGACTTCCTTTTCTAACTATTTTC 57.369 34.615 0.00 0.00 36.20 2.29
1525 2670 6.350696 GGGTTATGTTTATGTTTGGGACTTCC 60.351 42.308 0.00 0.00 0.00 3.46
1554 2699 5.705441 TGTGTAGCCAGTCTTTTTCCTATTG 59.295 40.000 0.00 0.00 0.00 1.90
1569 2714 1.677518 CGGGCAACTTATGTGTAGCCA 60.678 52.381 16.67 0.00 39.58 4.75
1663 3117 4.406648 TCTTGCATGAAGATCCGTACAT 57.593 40.909 0.00 0.00 35.64 2.29
1675 3129 6.999871 TGCTATATTCCTTTGATCTTGCATGA 59.000 34.615 4.57 4.57 0.00 3.07
2099 3720 1.746615 CATGACAAGGGTGGGAGCG 60.747 63.158 0.00 0.00 0.00 5.03
2179 3800 1.481772 CAATGGCAATGACCCGGAAAT 59.518 47.619 0.73 0.00 0.00 2.17
2227 3848 9.179909 TCACAATTAGTCAAGTCCTTTTAAACA 57.820 29.630 0.00 0.00 0.00 2.83
2735 4475 7.770801 AAAGGAAAGCAAAATTCAACACTAC 57.229 32.000 0.00 0.00 0.00 2.73
2943 4684 4.594491 AGGGGAGCATTTTGAGATGTTTTT 59.406 37.500 0.00 0.00 0.00 1.94
3007 4751 4.379082 GCAAAGTAAATCTACGTGGGGTTG 60.379 45.833 0.00 0.00 32.87 3.77
3035 4787 5.998454 ATGAATGGAGCAAGATCTAAACG 57.002 39.130 0.00 0.00 0.00 3.60
3108 4870 4.701956 ACCAAGCATCCGTTTCTATTTG 57.298 40.909 0.00 0.00 0.00 2.32
3277 5039 7.122715 TGGGTTTTAGTACAATCATAGGCATT 58.877 34.615 0.00 0.00 0.00 3.56
3568 5333 5.713861 GCTAGATGGATAAATCAAGCCCATT 59.286 40.000 0.00 0.00 37.71 3.16
3678 5444 8.195436 TGTCCCTTACAAGAATAGTTATCTTCG 58.805 37.037 0.00 0.00 34.99 3.79
3716 5482 4.395231 TCCACATGTGAGAACTACTACGAG 59.605 45.833 27.46 5.08 0.00 4.18
3717 5483 4.155462 GTCCACATGTGAGAACTACTACGA 59.845 45.833 27.46 8.08 0.00 3.43
3824 5592 4.898861 ACAACCAATGACCTTTAACCACAT 59.101 37.500 0.00 0.00 0.00 3.21
3827 5595 7.604657 AATAACAACCAATGACCTTTAACCA 57.395 32.000 0.00 0.00 0.00 3.67
3857 5625 1.477014 GCCAGCTACTTGGGGTATTCC 60.477 57.143 0.00 0.00 38.72 3.01
3923 5691 7.549147 TGTTGTAGTTGGACTAGTTTAGGAT 57.451 36.000 0.00 0.00 30.12 3.24
3924 5692 6.982160 TGTTGTAGTTGGACTAGTTTAGGA 57.018 37.500 0.00 0.00 30.12 2.94
3926 5694 8.033038 TGCTATGTTGTAGTTGGACTAGTTTAG 58.967 37.037 0.00 0.00 30.12 1.85
3927 5695 7.898918 TGCTATGTTGTAGTTGGACTAGTTTA 58.101 34.615 0.00 0.00 30.12 2.01
3928 5696 6.765403 TGCTATGTTGTAGTTGGACTAGTTT 58.235 36.000 0.00 0.00 30.12 2.66
4018 5786 3.327404 TTGAAGGAGGTCGGGCCC 61.327 66.667 13.57 13.57 38.26 5.80
4082 5850 4.283212 TCAAAAATGGTGGTGAAAGGATCC 59.717 41.667 2.48 2.48 0.00 3.36
4095 5863 6.817765 ATACGATGTGAAGTCAAAAATGGT 57.182 33.333 0.00 0.00 0.00 3.55
4139 5907 0.034089 GGAACCATCCAGTCTTGGGG 60.034 60.000 0.00 0.00 45.79 4.96
4149 5917 1.570979 AGGGAAGGAATGGAACCATCC 59.429 52.381 6.81 9.72 46.76 3.51
4152 5920 2.888212 CAAAGGGAAGGAATGGAACCA 58.112 47.619 0.00 0.00 0.00 3.67
4192 5960 5.187967 AGGTAGAGGACGTTTTCATCATCTT 59.812 40.000 0.00 0.00 37.51 2.40
4204 5972 3.883669 ACTTCGATTAGGTAGAGGACGT 58.116 45.455 0.00 0.00 0.00 4.34
4211 5979 6.036083 CACAATGACCAACTTCGATTAGGTAG 59.964 42.308 0.00 0.00 31.57 3.18
4212 5980 5.872617 CACAATGACCAACTTCGATTAGGTA 59.127 40.000 0.00 0.00 31.57 3.08
4216 5984 3.438781 GGCACAATGACCAACTTCGATTA 59.561 43.478 0.00 0.00 0.00 1.75
4217 5985 2.228822 GGCACAATGACCAACTTCGATT 59.771 45.455 0.00 0.00 0.00 3.34
4266 6034 1.293498 GCGCAAGAAGGAGGAGACA 59.707 57.895 0.30 0.00 43.02 3.41
4288 6056 1.067916 GTGTGGCAAGGCAAGTTGG 59.932 57.895 4.75 0.00 0.00 3.77
4290 6058 2.133641 GGGTGTGGCAAGGCAAGTT 61.134 57.895 0.00 0.00 0.00 2.66
4319 6087 2.989253 TCGAGAGGGTGCGCTCAA 60.989 61.111 9.73 0.00 0.00 3.02
4338 6106 1.156736 GGCGTCAGCTGTGTACAAAT 58.843 50.000 14.67 0.00 44.37 2.32
4353 6121 0.456221 CCTCGACATGAACTAGGCGT 59.544 55.000 0.00 0.00 0.00 5.68
4358 6126 1.741706 GACCGACCTCGACATGAACTA 59.258 52.381 0.00 0.00 43.02 2.24
4377 6145 0.892755 AGATGACAGTTTACCGCGGA 59.107 50.000 35.90 13.31 0.00 5.54
4378 6146 1.393539 CAAGATGACAGTTTACCGCGG 59.606 52.381 26.86 26.86 0.00 6.46
4379 6147 2.066262 ACAAGATGACAGTTTACCGCG 58.934 47.619 0.00 0.00 0.00 6.46
4380 6148 3.370061 GGTACAAGATGACAGTTTACCGC 59.630 47.826 0.00 0.00 0.00 5.68
4397 6179 2.036733 CTGGACAAGGTTTCTCGGTACA 59.963 50.000 0.00 0.00 0.00 2.90
4447 6229 2.841795 CCCCCTTAGTTCCTTCTACCA 58.158 52.381 0.00 0.00 0.00 3.25
4502 6289 1.068472 CACTAGAGCGTCGTCAAAGGT 60.068 52.381 0.00 0.00 0.00 3.50
4507 6294 1.645704 GGAGCACTAGAGCGTCGTCA 61.646 60.000 6.51 0.00 40.15 4.35
4518 6305 2.768527 CAAAGGAGATCAGGGAGCACTA 59.231 50.000 0.00 0.00 0.00 2.74
4520 6307 1.280421 ACAAAGGAGATCAGGGAGCAC 59.720 52.381 0.00 0.00 0.00 4.40
4522 6309 2.290577 ACAACAAAGGAGATCAGGGAGC 60.291 50.000 0.00 0.00 0.00 4.70
4592 6379 5.063944 CCAAGTGGACAATGTTAGAATCTCG 59.936 44.000 0.00 0.00 37.39 4.04
4627 6416 3.067320 TGATCTCGTAGCAAGATGGTCTG 59.933 47.826 0.00 0.00 33.64 3.51
4634 6423 2.954989 AGAGCATGATCTCGTAGCAAGA 59.045 45.455 7.89 0.00 38.12 3.02
4660 6449 0.318275 GTTTTCATTGACGGCGGCAA 60.318 50.000 32.31 32.31 0.00 4.52
4675 6464 0.598065 GGGCACTGAAGCGATGTTTT 59.402 50.000 0.00 0.00 34.64 2.43
4688 6477 1.228862 GGGTCAATTGTGGGGCACT 60.229 57.895 5.13 0.00 35.11 4.40
4726 6517 2.071778 AAGGATTGTGCGCCCAATAT 57.928 45.000 18.21 7.47 35.24 1.28
4757 6548 2.836360 GGCACATGGGAGCATGGG 60.836 66.667 0.00 0.00 38.91 4.00
4769 6560 5.450550 CGACATGAGTAATCTAGAAGGCACA 60.451 44.000 0.00 0.00 0.00 4.57
4840 6631 0.706433 ACGGGGAACTAGGGTCACTA 59.294 55.000 0.00 0.00 0.00 2.74
4868 6659 1.056660 TCAACTCTCAGGGACCAACC 58.943 55.000 0.00 0.00 38.08 3.77
4900 6691 1.074405 AGACACATGGCACTGATTGGT 59.926 47.619 0.00 0.00 0.00 3.67
4904 6695 0.986527 TGGAGACACATGGCACTGAT 59.013 50.000 0.00 0.00 33.40 2.90
4926 6721 3.181513 GCAGTCGTAGTGAAGATACACGA 60.182 47.826 0.00 0.00 44.35 4.35
4968 6763 7.147391 CCCATACCTCTCTCTCTATATCTAGCA 60.147 44.444 0.00 0.00 0.00 3.49
5036 6845 8.854614 ATTATATATCTTCAAGCCAAGTCACC 57.145 34.615 0.00 0.00 0.00 4.02
5080 6891 1.285280 CTTACAGGTGGGACCCATCA 58.715 55.000 26.12 1.89 39.75 3.07
5131 6942 7.465900 TCCTTCTCCTGGATAACCAAAATAT 57.534 36.000 0.00 0.00 46.32 1.28
5172 6983 6.798427 TGCTCTTCTATCACTCTACCATTT 57.202 37.500 0.00 0.00 0.00 2.32
5178 6989 5.663106 ACCCAAATGCTCTTCTATCACTCTA 59.337 40.000 0.00 0.00 0.00 2.43
5200 7011 3.639561 ACCCCTAAACATTTTGTGTCACC 59.360 43.478 0.00 0.00 41.14 4.02
5239 7050 4.263243 CCCATGGGTTTTGCCTAATTTTCA 60.263 41.667 23.93 0.00 37.43 2.69
5259 7070 2.952116 CCCTTGGTTAGTTTTCACCCA 58.048 47.619 0.00 0.00 31.24 4.51
5265 7076 3.636764 CACTCTTGCCCTTGGTTAGTTTT 59.363 43.478 0.00 0.00 0.00 2.43
5637 7448 7.130269 AGTTCGTGCAAACTAAGAACATAAAC 58.870 34.615 1.86 0.00 42.39 2.01
5639 7450 6.854496 AGTTCGTGCAAACTAAGAACATAA 57.146 33.333 1.86 0.00 42.39 1.90
5832 7643 7.762588 ACTAAGAACTGACAGCTCTAAGTAA 57.237 36.000 8.77 0.00 0.00 2.24
5862 7673 8.918202 AAAGTAATGAATTGTAGTGTCCTTCA 57.082 30.769 0.00 0.00 0.00 3.02
5910 7721 9.262358 GCTAACTAGTTGCAGCTATTTAAGTAT 57.738 33.333 18.56 6.27 0.00 2.12
5923 7734 1.060729 TGGGGTGCTAACTAGTTGCA 58.939 50.000 18.56 20.20 0.00 4.08
6053 7865 9.832445 GTAGGGAAGAACATGAGAAACATATAA 57.168 33.333 0.00 0.00 37.46 0.98
6079 7891 6.658188 AGAGAAAGGGGAATTATCGACTAG 57.342 41.667 0.00 0.00 0.00 2.57
6084 7896 8.568794 GGATTTTAAGAGAAAGGGGAATTATCG 58.431 37.037 0.00 0.00 0.00 2.92
6118 7935 9.161572 TGGTAACCATAGGCAGTATATCTAAAA 57.838 33.333 0.00 0.00 0.00 1.52
6228 8045 6.122277 AGTGGGATCAACGACATTATGAAAT 58.878 36.000 0.00 0.00 0.00 2.17
6241 8058 4.103153 TCAATCTGGGATAGTGGGATCAAC 59.897 45.833 0.00 0.00 0.00 3.18
6412 8229 0.846693 AAGTGACTTCTTGGCAGGGT 59.153 50.000 0.00 0.00 31.98 4.34
6442 8259 9.684702 AAGGTCTTATATTTAGGAACATAGGGA 57.315 33.333 0.00 0.00 0.00 4.20
6460 8277 9.488762 TCATAGTGGAATCTCTTTAAGGTCTTA 57.511 33.333 0.00 0.00 0.00 2.10
6461 8278 8.380742 TCATAGTGGAATCTCTTTAAGGTCTT 57.619 34.615 0.00 0.00 0.00 3.01
6462 8279 7.979786 TCATAGTGGAATCTCTTTAAGGTCT 57.020 36.000 0.00 0.00 0.00 3.85
6468 8285 9.529325 CGTGTTATTCATAGTGGAATCTCTTTA 57.471 33.333 0.00 0.00 38.41 1.85
6469 8286 7.011482 GCGTGTTATTCATAGTGGAATCTCTTT 59.989 37.037 0.00 0.00 38.41 2.52
6470 8287 6.480320 GCGTGTTATTCATAGTGGAATCTCTT 59.520 38.462 0.00 0.00 38.41 2.85
6471 8288 5.986135 GCGTGTTATTCATAGTGGAATCTCT 59.014 40.000 0.00 0.00 38.41 3.10
6472 8289 5.107837 CGCGTGTTATTCATAGTGGAATCTC 60.108 44.000 0.00 0.00 38.41 2.75
6473 8290 4.745125 CGCGTGTTATTCATAGTGGAATCT 59.255 41.667 0.00 0.00 38.41 2.40
6474 8291 4.084537 CCGCGTGTTATTCATAGTGGAATC 60.085 45.833 4.92 0.00 38.41 2.52
6475 8292 3.807622 CCGCGTGTTATTCATAGTGGAAT 59.192 43.478 4.92 0.00 40.45 3.01
6476 8293 3.119065 TCCGCGTGTTATTCATAGTGGAA 60.119 43.478 4.92 0.00 40.43 3.53
6477 8294 2.427812 TCCGCGTGTTATTCATAGTGGA 59.572 45.455 4.92 0.00 40.78 4.02
6478 8295 2.816689 TCCGCGTGTTATTCATAGTGG 58.183 47.619 4.92 0.00 38.01 4.00
6479 8296 3.802139 ACATCCGCGTGTTATTCATAGTG 59.198 43.478 4.92 0.00 0.00 2.74
6480 8297 4.054780 ACATCCGCGTGTTATTCATAGT 57.945 40.909 4.92 0.00 0.00 2.12
6481 8298 7.987268 ATATACATCCGCGTGTTATTCATAG 57.013 36.000 7.72 0.00 33.62 2.23
6482 8299 8.895737 TCTATATACATCCGCGTGTTATTCATA 58.104 33.333 7.72 0.48 33.62 2.15
6483 8300 7.701078 GTCTATATACATCCGCGTGTTATTCAT 59.299 37.037 7.72 0.00 33.62 2.57
6484 8301 7.025365 GTCTATATACATCCGCGTGTTATTCA 58.975 38.462 7.72 0.00 33.62 2.57
6485 8302 7.025365 TGTCTATATACATCCGCGTGTTATTC 58.975 38.462 7.72 3.04 33.62 1.75
6486 8303 6.916440 TGTCTATATACATCCGCGTGTTATT 58.084 36.000 7.72 0.00 33.62 1.40
6487 8304 6.505044 TGTCTATATACATCCGCGTGTTAT 57.495 37.500 7.72 8.19 33.62 1.89
6488 8305 5.945466 TGTCTATATACATCCGCGTGTTA 57.055 39.130 7.72 1.88 33.62 2.41
6489 8306 4.841443 TGTCTATATACATCCGCGTGTT 57.159 40.909 7.72 0.00 33.62 3.32
6490 8307 6.694877 ATATGTCTATATACATCCGCGTGT 57.305 37.500 4.92 6.46 40.52 4.49
6491 8308 7.987268 AAATATGTCTATATACATCCGCGTG 57.013 36.000 4.92 0.00 40.52 5.34
6492 8309 9.731819 CTAAAATATGTCTATATACATCCGCGT 57.268 33.333 4.92 0.00 40.52 6.01
6493 8310 9.946165 TCTAAAATATGTCTATATACATCCGCG 57.054 33.333 7.00 0.00 40.52 6.46
6514 8331 9.677567 GCAAAATGAGTGAATTTACAGTCTAAA 57.322 29.630 2.93 0.00 39.91 1.85
6515 8332 9.066892 AGCAAAATGAGTGAATTTACAGTCTAA 57.933 29.630 2.93 0.00 39.91 2.10
6516 8333 8.621532 AGCAAAATGAGTGAATTTACAGTCTA 57.378 30.769 2.93 0.00 39.91 2.59
6517 8334 7.516198 AGCAAAATGAGTGAATTTACAGTCT 57.484 32.000 2.93 0.00 39.91 3.24
6518 8335 7.358683 GCAAGCAAAATGAGTGAATTTACAGTC 60.359 37.037 2.93 0.00 39.73 3.51
6519 8336 6.421801 GCAAGCAAAATGAGTGAATTTACAGT 59.578 34.615 2.93 0.00 0.00 3.55
6520 8337 6.421501 TGCAAGCAAAATGAGTGAATTTACAG 59.578 34.615 2.93 0.00 0.00 2.74
6521 8338 6.279123 TGCAAGCAAAATGAGTGAATTTACA 58.721 32.000 2.93 0.00 0.00 2.41
6522 8339 6.768029 TGCAAGCAAAATGAGTGAATTTAC 57.232 33.333 0.00 0.00 0.00 2.01
6523 8340 6.930164 ACATGCAAGCAAAATGAGTGAATTTA 59.070 30.769 0.00 0.00 0.00 1.40
6524 8341 5.761234 ACATGCAAGCAAAATGAGTGAATTT 59.239 32.000 0.00 0.00 0.00 1.82
6525 8342 5.302360 ACATGCAAGCAAAATGAGTGAATT 58.698 33.333 0.00 0.00 0.00 2.17
6526 8343 4.890088 ACATGCAAGCAAAATGAGTGAAT 58.110 34.783 0.00 0.00 0.00 2.57
6527 8344 4.325028 ACATGCAAGCAAAATGAGTGAA 57.675 36.364 0.00 0.00 0.00 3.18
6528 8345 4.520111 ACTACATGCAAGCAAAATGAGTGA 59.480 37.500 0.00 0.00 0.00 3.41
6529 8346 4.801891 ACTACATGCAAGCAAAATGAGTG 58.198 39.130 0.00 0.00 0.00 3.51
6530 8347 4.082571 GGACTACATGCAAGCAAAATGAGT 60.083 41.667 0.00 0.00 0.00 3.41
6531 8348 4.082625 TGGACTACATGCAAGCAAAATGAG 60.083 41.667 0.00 0.00 0.00 2.90
6532 8349 3.825585 TGGACTACATGCAAGCAAAATGA 59.174 39.130 0.00 0.00 0.00 2.57
6533 8350 4.177165 TGGACTACATGCAAGCAAAATG 57.823 40.909 0.00 0.00 0.00 2.32
6534 8351 5.653769 ACTATGGACTACATGCAAGCAAAAT 59.346 36.000 0.00 0.00 40.82 1.82
6535 8352 5.009631 ACTATGGACTACATGCAAGCAAAA 58.990 37.500 0.00 0.00 40.82 2.44
6536 8353 4.395854 CACTATGGACTACATGCAAGCAAA 59.604 41.667 0.00 0.00 40.82 3.68
6537 8354 3.940852 CACTATGGACTACATGCAAGCAA 59.059 43.478 0.00 0.00 40.82 3.91
6538 8355 3.534554 CACTATGGACTACATGCAAGCA 58.465 45.455 0.00 0.00 40.82 3.91
6539 8356 2.874701 CCACTATGGACTACATGCAAGC 59.125 50.000 0.00 0.00 40.96 4.01
6540 8357 4.406648 TCCACTATGGACTACATGCAAG 57.593 45.455 0.00 0.00 42.67 4.01
6568 8385 9.868160 CCTCCATTCCTAAATATAAGACCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
6569 8386 8.448816 CCCTCCATTCCTAAATATAAGACCTTT 58.551 37.037 0.00 0.00 0.00 3.11
6570 8387 7.799583 TCCCTCCATTCCTAAATATAAGACCTT 59.200 37.037 0.00 0.00 0.00 3.50
6571 8388 7.321530 TCCCTCCATTCCTAAATATAAGACCT 58.678 38.462 0.00 0.00 0.00 3.85
6572 8389 7.237887 ACTCCCTCCATTCCTAAATATAAGACC 59.762 40.741 0.00 0.00 0.00 3.85
6573 8390 8.208575 ACTCCCTCCATTCCTAAATATAAGAC 57.791 38.462 0.00 0.00 0.00 3.01
6574 8391 9.322769 GTACTCCCTCCATTCCTAAATATAAGA 57.677 37.037 0.00 0.00 0.00 2.10
6575 8392 9.101325 TGTACTCCCTCCATTCCTAAATATAAG 57.899 37.037 0.00 0.00 0.00 1.73
6576 8393 9.455144 TTGTACTCCCTCCATTCCTAAATATAA 57.545 33.333 0.00 0.00 0.00 0.98
6577 8394 9.629649 ATTGTACTCCCTCCATTCCTAAATATA 57.370 33.333 0.00 0.00 0.00 0.86
6578 8395 7.947782 TTGTACTCCCTCCATTCCTAAATAT 57.052 36.000 0.00 0.00 0.00 1.28
6579 8396 7.947782 ATTGTACTCCCTCCATTCCTAAATA 57.052 36.000 0.00 0.00 0.00 1.40
6580 8397 6.848562 ATTGTACTCCCTCCATTCCTAAAT 57.151 37.500 0.00 0.00 0.00 1.40
6581 8398 7.947782 ATATTGTACTCCCTCCATTCCTAAA 57.052 36.000 0.00 0.00 0.00 1.85
6582 8399 7.947782 AATATTGTACTCCCTCCATTCCTAA 57.052 36.000 0.00 0.00 0.00 2.69
6583 8400 7.570982 TGAAATATTGTACTCCCTCCATTCCTA 59.429 37.037 0.00 0.00 0.00 2.94
6584 8401 6.389869 TGAAATATTGTACTCCCTCCATTCCT 59.610 38.462 0.00 0.00 0.00 3.36
6585 8402 6.601332 TGAAATATTGTACTCCCTCCATTCC 58.399 40.000 0.00 0.00 0.00 3.01
6586 8403 7.175641 CCATGAAATATTGTACTCCCTCCATTC 59.824 40.741 0.00 0.00 0.00 2.67
6587 8404 7.006509 CCATGAAATATTGTACTCCCTCCATT 58.993 38.462 0.00 0.00 0.00 3.16
6588 8405 6.103205 ACCATGAAATATTGTACTCCCTCCAT 59.897 38.462 0.00 0.00 0.00 3.41
6589 8406 5.431731 ACCATGAAATATTGTACTCCCTCCA 59.568 40.000 0.00 0.00 0.00 3.86
6590 8407 5.941788 ACCATGAAATATTGTACTCCCTCC 58.058 41.667 0.00 0.00 0.00 4.30
6591 8408 7.963532 TCTACCATGAAATATTGTACTCCCTC 58.036 38.462 0.00 0.00 0.00 4.30
6592 8409 7.789831 TCTCTACCATGAAATATTGTACTCCCT 59.210 37.037 0.00 0.00 0.00 4.20
6593 8410 7.963532 TCTCTACCATGAAATATTGTACTCCC 58.036 38.462 0.00 0.00 0.00 4.30
6594 8411 9.646427 GATCTCTACCATGAAATATTGTACTCC 57.354 37.037 0.00 0.00 0.00 3.85
6599 8416 8.888419 AGGATGATCTCTACCATGAAATATTGT 58.112 33.333 0.00 0.00 0.00 2.71
6608 8425 7.789026 TGCATATTAGGATGATCTCTACCATG 58.211 38.462 0.00 0.00 0.00 3.66
6609 8426 7.984859 TGCATATTAGGATGATCTCTACCAT 57.015 36.000 0.00 0.00 0.00 3.55
6644 8461 6.591935 TCTTAAAGTGTGAATGGAAGACTGT 58.408 36.000 0.00 0.00 0.00 3.55
6712 8529 9.162764 ACAAGCTCGTGAGTATTAAAAATATGT 57.837 29.630 0.00 0.00 0.00 2.29
6730 8547 4.142838 TGCATTAACAAGATCACAAGCTCG 60.143 41.667 0.00 0.00 0.00 5.03
6737 8554 9.503427 GGTAAGTTATTGCATTAACAAGATCAC 57.497 33.333 25.42 15.56 35.05 3.06
6762 8579 8.964476 ATGAATTACTCCTAGTATTGTGTTGG 57.036 34.615 0.00 0.00 29.64 3.77
6807 8624 9.817809 GTGTTATAGGATAGTGAGAAAACATCA 57.182 33.333 0.00 0.00 0.00 3.07
6847 8677 2.301870 AGTAGTCGGCACTTTCCAATCA 59.698 45.455 0.00 0.00 33.62 2.57
6932 8762 5.005740 TCTGATGATTTCACAAGGAACTGG 58.994 41.667 0.00 0.00 40.86 4.00
6968 8798 8.918202 TGTATTGACATAGAGGAAAACAAACT 57.082 30.769 0.00 0.00 0.00 2.66
7045 8875 2.435805 GAGATGACCTCCCTGCATTGTA 59.564 50.000 0.00 0.00 35.87 2.41
7066 8896 3.555956 CCGATGGGTTTTCTATGAACTCG 59.444 47.826 0.00 0.00 29.97 4.18
7130 8960 1.409427 GTCGTCCCCTACATCTTCAGG 59.591 57.143 0.00 0.00 0.00 3.86
7158 8988 8.942033 TCTATGCATATATCAAGCCATAAGGAT 58.058 33.333 6.92 0.00 36.89 3.24
7249 9079 8.870116 ACAGTGGTGCTAATATTGATACTATCA 58.130 33.333 0.00 0.00 37.55 2.15
7290 9120 9.002600 ACATATTCACGCAATTCATACATACAT 57.997 29.630 0.00 0.00 0.00 2.29
7306 9136 7.803079 ACGATATGAATGAGACATATTCACG 57.197 36.000 0.00 0.00 44.57 4.35
7329 9159 1.270465 ACTGGTTACCCAAGCACGTAC 60.270 52.381 0.00 0.00 41.27 3.67
7370 9204 5.587289 GAGACCAACTAGAGAGCTTACATG 58.413 45.833 0.00 0.00 0.00 3.21
7387 9221 1.691976 ACTGTTGGAACATCGAGACCA 59.308 47.619 0.00 0.00 39.30 4.02
7420 9254 7.230849 ACAAACATGCTTGGAAAATGATAGA 57.769 32.000 13.17 0.00 0.00 1.98
7486 9323 0.318762 AGTTGCTTCCTCTCACGGAC 59.681 55.000 0.00 0.00 31.44 4.79
7488 9325 0.605589 AGAGTTGCTTCCTCTCACGG 59.394 55.000 0.00 0.00 34.14 4.94
7502 9339 2.635915 TCGGTCCATGTAAACCAGAGTT 59.364 45.455 9.15 0.00 38.03 3.01
7506 9343 3.134081 ACCTATCGGTCCATGTAAACCAG 59.866 47.826 9.15 3.58 40.27 4.00
7511 9348 3.035055 TCCACCTATCGGTCCATGTAA 57.965 47.619 0.00 0.00 43.24 2.41
7513 9350 2.103153 ATCCACCTATCGGTCCATGT 57.897 50.000 0.00 0.00 43.24 3.21
7522 9359 5.048846 TGAAAAGCCCTAATCCACCTATC 57.951 43.478 0.00 0.00 0.00 2.08
7536 9373 2.351738 CCTCACAAACCGATGAAAAGCC 60.352 50.000 0.00 0.00 0.00 4.35
7605 9444 4.279169 AGGGTATGTGTGCATGCATTTATC 59.721 41.667 25.64 11.15 39.10 1.75
7630 9469 6.323225 TCAGTCTCTCAAAGATGCTCATATGA 59.677 38.462 5.07 5.07 36.11 2.15
7641 9480 2.700371 TGCCAACTCAGTCTCTCAAAGA 59.300 45.455 0.00 0.00 0.00 2.52
7644 9483 1.345741 CCTGCCAACTCAGTCTCTCAA 59.654 52.381 0.00 0.00 32.32 3.02
7645 9484 0.972134 CCTGCCAACTCAGTCTCTCA 59.028 55.000 0.00 0.00 32.32 3.27
7658 9497 1.405526 GCTTCGTCAATCTACCTGCCA 60.406 52.381 0.00 0.00 0.00 4.92
7678 9517 2.463589 TAACAAGGCTCCTGCGGTGG 62.464 60.000 0.00 0.00 40.82 4.61
7695 9534 4.382685 GGGAGGTGACACTTCGATTGATAA 60.383 45.833 11.18 0.00 0.00 1.75
7700 9539 1.002087 GTGGGAGGTGACACTTCGATT 59.998 52.381 11.18 0.00 34.84 3.34
7703 9542 0.319900 CAGTGGGAGGTGACACTTCG 60.320 60.000 11.18 0.00 45.03 3.79
7728 9567 8.674607 CCTTTGTGTCTTATTAAGGTGGAATAC 58.325 37.037 3.66 0.00 32.55 1.89
7821 9660 8.874744 AGGCTACCACTTTTATATATCGACTA 57.125 34.615 0.00 0.00 0.00 2.59
7822 9661 7.778185 AGGCTACCACTTTTATATATCGACT 57.222 36.000 0.00 0.00 0.00 4.18
7856 9695 4.654915 TCATACCATCATTCATTGCCGAT 58.345 39.130 0.00 0.00 0.00 4.18
7896 9736 1.272092 ACATGGGTTGTGGATGTGGAG 60.272 52.381 0.00 0.00 37.11 3.86
7938 9778 9.525409 AGCACTATCTTTTTGAAAATATGATGC 57.475 29.630 12.12 12.12 32.77 3.91
8027 9867 6.942886 TTTGGAAAGTAGCGCAAATTTATG 57.057 33.333 11.47 0.00 0.00 1.90
8079 9919 3.290948 TGGCAAAAACACTACCTGACT 57.709 42.857 0.00 0.00 0.00 3.41
8118 9958 1.376683 CGCCTTTGGATCGGGTCAA 60.377 57.895 0.00 0.00 0.00 3.18
8119 9959 2.119484 AACGCCTTTGGATCGGGTCA 62.119 55.000 0.00 0.00 0.00 4.02
8120 9960 0.958876 AAACGCCTTTGGATCGGGTC 60.959 55.000 0.00 0.00 0.00 4.46
8121 9961 1.074248 AAACGCCTTTGGATCGGGT 59.926 52.632 0.00 0.00 0.00 5.28
8122 9962 0.958382 TCAAACGCCTTTGGATCGGG 60.958 55.000 8.10 0.00 37.87 5.14
8123 9963 0.878416 TTCAAACGCCTTTGGATCGG 59.122 50.000 8.10 0.00 37.87 4.18
8124 9964 2.697431 TTTCAAACGCCTTTGGATCG 57.303 45.000 8.10 0.00 37.87 3.69
8125 9965 3.608073 CGATTTTCAAACGCCTTTGGATC 59.392 43.478 8.10 8.36 37.87 3.36
8126 9966 3.005367 ACGATTTTCAAACGCCTTTGGAT 59.995 39.130 8.10 1.78 37.87 3.41
8127 9967 2.359531 ACGATTTTCAAACGCCTTTGGA 59.640 40.909 8.10 0.00 37.87 3.53
8128 9968 2.724174 GACGATTTTCAAACGCCTTTGG 59.276 45.455 8.10 0.00 37.87 3.28
8129 9969 3.628017 AGACGATTTTCAAACGCCTTTG 58.372 40.909 2.13 2.13 38.56 2.77
8130 9970 3.982576 AGACGATTTTCAAACGCCTTT 57.017 38.095 0.00 0.00 0.00 3.11
8131 9971 3.314080 TGAAGACGATTTTCAAACGCCTT 59.686 39.130 0.00 0.00 33.16 4.35
8132 9972 2.875933 TGAAGACGATTTTCAAACGCCT 59.124 40.909 0.00 0.00 31.98 5.52
8133 9973 2.971261 GTGAAGACGATTTTCAAACGCC 59.029 45.455 0.00 0.00 36.41 5.68
8134 9974 3.417645 GTGTGAAGACGATTTTCAAACGC 59.582 43.478 0.00 0.00 34.21 4.84
8136 9976 3.417645 GCGTGTGAAGACGATTTTCAAAC 59.582 43.478 3.96 9.85 42.10 2.93
8137 9977 3.613563 GCGTGTGAAGACGATTTTCAAA 58.386 40.909 3.96 0.00 42.10 2.69
8138 9978 2.348125 CGCGTGTGAAGACGATTTTCAA 60.348 45.455 3.96 0.00 42.10 2.69
8139 9979 1.191425 CGCGTGTGAAGACGATTTTCA 59.809 47.619 3.96 0.00 42.10 2.69
8140 9980 1.853230 CGCGTGTGAAGACGATTTTC 58.147 50.000 3.96 0.00 42.10 2.29
8141 9981 0.110823 GCGCGTGTGAAGACGATTTT 60.111 50.000 8.43 0.00 42.10 1.82
8142 9982 1.491563 GCGCGTGTGAAGACGATTT 59.508 52.632 8.43 0.00 42.10 2.17
8143 9983 2.380410 GGCGCGTGTGAAGACGATT 61.380 57.895 8.43 0.00 42.10 3.34
8144 9984 2.809601 GGCGCGTGTGAAGACGAT 60.810 61.111 8.43 0.00 42.10 3.73
8145 9985 3.567478 ATGGCGCGTGTGAAGACGA 62.567 57.895 8.43 0.00 42.10 4.20
8146 9986 2.667318 AATGGCGCGTGTGAAGACG 61.667 57.895 8.43 0.00 42.42 4.18
8147 9987 1.154413 CAATGGCGCGTGTGAAGAC 60.154 57.895 8.43 0.00 0.00 3.01
8148 9988 1.301322 TCAATGGCGCGTGTGAAGA 60.301 52.632 8.43 0.00 0.00 2.87
8149 9989 1.154413 GTCAATGGCGCGTGTGAAG 60.154 57.895 8.43 0.00 0.00 3.02
8150 9990 1.440145 TTGTCAATGGCGCGTGTGAA 61.440 50.000 8.43 0.00 0.00 3.18
8151 9991 1.840630 CTTGTCAATGGCGCGTGTGA 61.841 55.000 8.43 0.70 0.00 3.58
8152 9992 1.440850 CTTGTCAATGGCGCGTGTG 60.441 57.895 8.43 0.00 0.00 3.82
8153 9993 2.945984 CTTGTCAATGGCGCGTGT 59.054 55.556 8.43 0.00 0.00 4.49
8154 9994 2.502510 GCTTGTCAATGGCGCGTG 60.503 61.111 8.43 0.00 0.00 5.34
8155 9995 4.088762 CGCTTGTCAATGGCGCGT 62.089 61.111 8.43 0.00 42.28 6.01
8159 9999 1.079875 CAATGGCGCTTGTCAATGGC 61.080 55.000 7.64 4.99 0.00 4.40
8160 10000 1.079875 GCAATGGCGCTTGTCAATGG 61.080 55.000 7.64 0.00 28.67 3.16
8161 10001 1.079875 GGCAATGGCGCTTGTCAATG 61.080 55.000 7.64 0.68 42.47 2.82
8162 10002 1.216178 GGCAATGGCGCTTGTCAAT 59.784 52.632 7.64 0.00 42.47 2.57
8163 10003 2.198969 TGGCAATGGCGCTTGTCAA 61.199 52.632 13.54 0.00 37.77 3.18
8164 10004 2.596923 TGGCAATGGCGCTTGTCA 60.597 55.556 12.10 12.10 42.47 3.58
8165 10005 2.126346 GTGGCAATGGCGCTTGTC 60.126 61.111 13.28 7.27 42.47 3.18
8166 10006 3.683937 GGTGGCAATGGCGCTTGT 61.684 61.111 19.47 0.00 42.47 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.