Multiple sequence alignment - TraesCS5A01G338700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G338700 | chr5A | 100.000 | 3320 | 0 | 0 | 1 | 3320 | 546359337 | 546362656 | 0.000000e+00 | 6131.0 |
1 | TraesCS5A01G338700 | chr5A | 91.835 | 1335 | 103 | 1 | 993 | 2321 | 546344828 | 546346162 | 0.000000e+00 | 1857.0 |
2 | TraesCS5A01G338700 | chr5A | 79.289 | 1323 | 242 | 23 | 1001 | 2316 | 512799376 | 512800673 | 0.000000e+00 | 896.0 |
3 | TraesCS5A01G338700 | chr5A | 76.767 | 1330 | 266 | 29 | 1001 | 2316 | 546154217 | 546155517 | 0.000000e+00 | 704.0 |
4 | TraesCS5A01G338700 | chr5A | 84.000 | 650 | 94 | 7 | 1672 | 2316 | 545985276 | 545985920 | 1.690000e-172 | 616.0 |
5 | TraesCS5A01G338700 | chr5A | 95.349 | 129 | 6 | 0 | 154 | 282 | 290115538 | 290115410 | 4.340000e-49 | 206.0 |
6 | TraesCS5A01G338700 | chr5A | 93.893 | 131 | 7 | 1 | 311 | 440 | 546354659 | 546354789 | 2.610000e-46 | 196.0 |
7 | TraesCS5A01G338700 | chr5A | 85.093 | 161 | 16 | 3 | 6 | 159 | 546354465 | 546354624 | 1.230000e-34 | 158.0 |
8 | TraesCS5A01G338700 | chr5A | 84.946 | 93 | 13 | 1 | 2888 | 2980 | 546346584 | 546346675 | 3.530000e-15 | 93.5 |
9 | TraesCS5A01G338700 | chr5B | 88.507 | 2680 | 174 | 49 | 678 | 3320 | 520419078 | 520421660 | 0.000000e+00 | 3120.0 |
10 | TraesCS5A01G338700 | chr5B | 91.382 | 1346 | 110 | 3 | 993 | 2332 | 520369585 | 520370930 | 0.000000e+00 | 1838.0 |
11 | TraesCS5A01G338700 | chr5B | 78.695 | 1333 | 241 | 31 | 1001 | 2316 | 488561076 | 488562382 | 0.000000e+00 | 848.0 |
12 | TraesCS5A01G338700 | chr5B | 96.324 | 136 | 4 | 1 | 312 | 446 | 520418947 | 520419082 | 4.310000e-54 | 222.0 |
13 | TraesCS5A01G338700 | chr5D | 90.207 | 1787 | 124 | 21 | 678 | 2460 | 430985225 | 430986964 | 0.000000e+00 | 2283.0 |
14 | TraesCS5A01G338700 | chr5D | 92.125 | 1346 | 100 | 1 | 993 | 2332 | 430968646 | 430969991 | 0.000000e+00 | 1893.0 |
15 | TraesCS5A01G338700 | chr5D | 90.499 | 821 | 53 | 15 | 2520 | 3320 | 430991471 | 430992286 | 0.000000e+00 | 1061.0 |
16 | TraesCS5A01G338700 | chr5D | 79.033 | 1345 | 234 | 36 | 1001 | 2326 | 407517493 | 407518808 | 0.000000e+00 | 878.0 |
17 | TraesCS5A01G338700 | chr5D | 84.251 | 654 | 93 | 7 | 1668 | 2316 | 430512300 | 430512948 | 2.170000e-176 | 628.0 |
18 | TraesCS5A01G338700 | chr5D | 83.817 | 655 | 92 | 11 | 1668 | 2315 | 430446197 | 430446844 | 7.870000e-171 | 610.0 |
19 | TraesCS5A01G338700 | chr5D | 88.125 | 160 | 11 | 3 | 6 | 157 | 430984877 | 430985036 | 2.030000e-42 | 183.0 |
20 | TraesCS5A01G338700 | chr5D | 96.667 | 90 | 2 | 1 | 358 | 446 | 430985140 | 430985229 | 7.420000e-32 | 148.0 |
21 | TraesCS5A01G338700 | chr5D | 97.917 | 48 | 1 | 0 | 312 | 359 | 430985076 | 430985123 | 2.120000e-12 | 84.2 |
22 | TraesCS5A01G338700 | chr3B | 82.520 | 738 | 103 | 14 | 1248 | 1984 | 323317374 | 323316662 | 2.810000e-175 | 625.0 |
23 | TraesCS5A01G338700 | chr3B | 94.030 | 134 | 7 | 1 | 154 | 287 | 630594209 | 630594077 | 5.620000e-48 | 202.0 |
24 | TraesCS5A01G338700 | chr3B | 92.086 | 139 | 11 | 0 | 153 | 291 | 741865979 | 741865841 | 2.610000e-46 | 196.0 |
25 | TraesCS5A01G338700 | chr1B | 80.774 | 749 | 107 | 17 | 1248 | 1983 | 256824311 | 256823587 | 4.840000e-153 | 551.0 |
26 | TraesCS5A01G338700 | chr6A | 94.656 | 131 | 7 | 0 | 152 | 282 | 542709344 | 542709474 | 1.560000e-48 | 204.0 |
27 | TraesCS5A01G338700 | chr6B | 94.615 | 130 | 7 | 0 | 153 | 282 | 30348243 | 30348372 | 5.620000e-48 | 202.0 |
28 | TraesCS5A01G338700 | chr6B | 92.647 | 136 | 10 | 0 | 150 | 285 | 710104002 | 710104137 | 2.610000e-46 | 196.0 |
29 | TraesCS5A01G338700 | chr2A | 92.806 | 139 | 8 | 2 | 155 | 293 | 74829187 | 74829051 | 2.020000e-47 | 200.0 |
30 | TraesCS5A01G338700 | chr1D | 94.574 | 129 | 7 | 0 | 156 | 284 | 43298886 | 43298758 | 2.020000e-47 | 200.0 |
31 | TraesCS5A01G338700 | chr4D | 90.000 | 150 | 11 | 3 | 154 | 299 | 117644077 | 117643928 | 1.220000e-44 | 191.0 |
32 | TraesCS5A01G338700 | chr4B | 83.133 | 83 | 14 | 0 | 505 | 587 | 659479904 | 659479822 | 3.550000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G338700 | chr5A | 546359337 | 546362656 | 3319 | False | 6131.00 | 6131 | 100.0000 | 1 | 3320 | 1 | chr5A.!!$F4 | 3319 |
1 | TraesCS5A01G338700 | chr5A | 546344828 | 546346675 | 1847 | False | 975.25 | 1857 | 88.3905 | 993 | 2980 | 2 | chr5A.!!$F5 | 1987 |
2 | TraesCS5A01G338700 | chr5A | 512799376 | 512800673 | 1297 | False | 896.00 | 896 | 79.2890 | 1001 | 2316 | 1 | chr5A.!!$F1 | 1315 |
3 | TraesCS5A01G338700 | chr5A | 546154217 | 546155517 | 1300 | False | 704.00 | 704 | 76.7670 | 1001 | 2316 | 1 | chr5A.!!$F3 | 1315 |
4 | TraesCS5A01G338700 | chr5A | 545985276 | 545985920 | 644 | False | 616.00 | 616 | 84.0000 | 1672 | 2316 | 1 | chr5A.!!$F2 | 644 |
5 | TraesCS5A01G338700 | chr5B | 520369585 | 520370930 | 1345 | False | 1838.00 | 1838 | 91.3820 | 993 | 2332 | 1 | chr5B.!!$F2 | 1339 |
6 | TraesCS5A01G338700 | chr5B | 520418947 | 520421660 | 2713 | False | 1671.00 | 3120 | 92.4155 | 312 | 3320 | 2 | chr5B.!!$F3 | 3008 |
7 | TraesCS5A01G338700 | chr5B | 488561076 | 488562382 | 1306 | False | 848.00 | 848 | 78.6950 | 1001 | 2316 | 1 | chr5B.!!$F1 | 1315 |
8 | TraesCS5A01G338700 | chr5D | 430968646 | 430969991 | 1345 | False | 1893.00 | 1893 | 92.1250 | 993 | 2332 | 1 | chr5D.!!$F4 | 1339 |
9 | TraesCS5A01G338700 | chr5D | 430991471 | 430992286 | 815 | False | 1061.00 | 1061 | 90.4990 | 2520 | 3320 | 1 | chr5D.!!$F5 | 800 |
10 | TraesCS5A01G338700 | chr5D | 407517493 | 407518808 | 1315 | False | 878.00 | 878 | 79.0330 | 1001 | 2326 | 1 | chr5D.!!$F1 | 1325 |
11 | TraesCS5A01G338700 | chr5D | 430984877 | 430986964 | 2087 | False | 674.55 | 2283 | 93.2290 | 6 | 2460 | 4 | chr5D.!!$F6 | 2454 |
12 | TraesCS5A01G338700 | chr5D | 430512300 | 430512948 | 648 | False | 628.00 | 628 | 84.2510 | 1668 | 2316 | 1 | chr5D.!!$F3 | 648 |
13 | TraesCS5A01G338700 | chr5D | 430446197 | 430446844 | 647 | False | 610.00 | 610 | 83.8170 | 1668 | 2315 | 1 | chr5D.!!$F2 | 647 |
14 | TraesCS5A01G338700 | chr3B | 323316662 | 323317374 | 712 | True | 625.00 | 625 | 82.5200 | 1248 | 1984 | 1 | chr3B.!!$R1 | 736 |
15 | TraesCS5A01G338700 | chr1B | 256823587 | 256824311 | 724 | True | 551.00 | 551 | 80.7740 | 1248 | 1983 | 1 | chr1B.!!$R1 | 735 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
669 | 705 | 0.25361 | ATCTCAGTCGACCGAGACCT | 59.746 | 55.0 | 28.97 | 14.9 | 40.92 | 3.85 | F |
867 | 907 | 0.39086 | ATCGCCTTCTTCCTCCATCG | 59.609 | 55.0 | 0.00 | 0.0 | 0.00 | 3.84 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1605 | 1658 | 0.882042 | GATAGTACTCGACGCCCCGA | 60.882 | 60.000 | 0.00 | 0.0 | 37.03 | 5.14 | R |
2862 | 2945 | 1.065701 | CGTCCCGAGAATTCAGACGAT | 59.934 | 52.381 | 24.11 | 0.0 | 45.44 | 3.73 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 5.771165 | GGAGTAGGACTCTCGGATCTAAATT | 59.229 | 44.000 | 6.58 | 0.00 | 44.46 | 1.82 |
31 | 32 | 6.739331 | AGGACTCTCGGATCTAAATTTCAT | 57.261 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
41 | 42 | 8.141909 | TCGGATCTAAATTTCATCGTGTAGATT | 58.858 | 33.333 | 0.00 | 0.00 | 37.52 | 2.40 |
81 | 83 | 5.590530 | TTTTGTGCGGGAATATAGCATTT | 57.409 | 34.783 | 0.00 | 0.00 | 43.17 | 2.32 |
114 | 123 | 2.038557 | AGTAAGTTGTCCCGTTCTGCAT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
117 | 126 | 3.350219 | AGTTGTCCCGTTCTGCATAAT | 57.650 | 42.857 | 0.00 | 0.00 | 0.00 | 1.28 |
119 | 128 | 4.442706 | AGTTGTCCCGTTCTGCATAATAG | 58.557 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
124 | 133 | 3.069586 | TCCCGTTCTGCATAATAGGTCAG | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
157 | 166 | 5.173312 | CAGCTGTACACTGCACGTAATATAC | 59.827 | 44.000 | 5.25 | 0.00 | 42.33 | 1.47 |
159 | 168 | 5.398711 | GCTGTACACTGCACGTAATATACTC | 59.601 | 44.000 | 6.38 | 0.00 | 40.06 | 2.59 |
160 | 169 | 5.824429 | TGTACACTGCACGTAATATACTCC | 58.176 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
161 | 170 | 4.317671 | ACACTGCACGTAATATACTCCC | 57.682 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
162 | 171 | 3.958798 | ACACTGCACGTAATATACTCCCT | 59.041 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
163 | 172 | 4.037684 | ACACTGCACGTAATATACTCCCTC | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
164 | 173 | 3.573110 | ACTGCACGTAATATACTCCCTCC | 59.427 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
165 | 174 | 2.555325 | TGCACGTAATATACTCCCTCCG | 59.445 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
166 | 175 | 2.555757 | GCACGTAATATACTCCCTCCGT | 59.444 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
167 | 176 | 3.365767 | GCACGTAATATACTCCCTCCGTC | 60.366 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
168 | 177 | 4.070716 | CACGTAATATACTCCCTCCGTCT | 58.929 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
169 | 178 | 4.153835 | CACGTAATATACTCCCTCCGTCTC | 59.846 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
170 | 179 | 4.202398 | ACGTAATATACTCCCTCCGTCTCA | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.27 |
171 | 180 | 4.758674 | CGTAATATACTCCCTCCGTCTCAA | 59.241 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
172 | 181 | 5.240183 | CGTAATATACTCCCTCCGTCTCAAA | 59.760 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
173 | 182 | 6.238842 | CGTAATATACTCCCTCCGTCTCAAAA | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 2.44 |
174 | 183 | 6.749036 | AATATACTCCCTCCGTCTCAAAAT | 57.251 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
175 | 184 | 6.749036 | ATATACTCCCTCCGTCTCAAAATT | 57.251 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
176 | 185 | 3.336138 | ACTCCCTCCGTCTCAAAATTC | 57.664 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
177 | 186 | 2.907042 | ACTCCCTCCGTCTCAAAATTCT | 59.093 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
178 | 187 | 3.328050 | ACTCCCTCCGTCTCAAAATTCTT | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
179 | 188 | 3.674997 | TCCCTCCGTCTCAAAATTCTTG | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
180 | 189 | 3.072476 | TCCCTCCGTCTCAAAATTCTTGT | 59.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
181 | 190 | 3.437049 | CCCTCCGTCTCAAAATTCTTGTC | 59.563 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
182 | 191 | 4.319177 | CCTCCGTCTCAAAATTCTTGTCT | 58.681 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
183 | 192 | 4.757149 | CCTCCGTCTCAAAATTCTTGTCTT | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
184 | 193 | 5.932303 | CCTCCGTCTCAAAATTCTTGTCTTA | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
185 | 194 | 6.091441 | CCTCCGTCTCAAAATTCTTGTCTTAG | 59.909 | 42.308 | 0.00 | 0.00 | 0.00 | 2.18 |
186 | 195 | 6.755206 | TCCGTCTCAAAATTCTTGTCTTAGA | 58.245 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
187 | 196 | 7.386851 | TCCGTCTCAAAATTCTTGTCTTAGAT | 58.613 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
188 | 197 | 7.878127 | TCCGTCTCAAAATTCTTGTCTTAGATT | 59.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
189 | 198 | 8.507249 | CCGTCTCAAAATTCTTGTCTTAGATTT | 58.493 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
190 | 199 | 9.322776 | CGTCTCAAAATTCTTGTCTTAGATTTG | 57.677 | 33.333 | 0.00 | 0.00 | 30.65 | 2.32 |
199 | 208 | 9.646427 | ATTCTTGTCTTAGATTTGTCTAGACAC | 57.354 | 33.333 | 25.13 | 13.90 | 41.67 | 3.67 |
200 | 209 | 8.178313 | TCTTGTCTTAGATTTGTCTAGACACA | 57.822 | 34.615 | 25.13 | 19.36 | 41.67 | 3.72 |
201 | 210 | 8.300286 | TCTTGTCTTAGATTTGTCTAGACACAG | 58.700 | 37.037 | 25.13 | 13.33 | 41.67 | 3.66 |
202 | 211 | 7.761038 | TGTCTTAGATTTGTCTAGACACAGA | 57.239 | 36.000 | 25.13 | 14.17 | 41.67 | 3.41 |
203 | 212 | 8.354711 | TGTCTTAGATTTGTCTAGACACAGAT | 57.645 | 34.615 | 25.13 | 17.97 | 41.67 | 2.90 |
204 | 213 | 8.246871 | TGTCTTAGATTTGTCTAGACACAGATG | 58.753 | 37.037 | 25.13 | 11.91 | 41.67 | 2.90 |
205 | 214 | 8.247562 | GTCTTAGATTTGTCTAGACACAGATGT | 58.752 | 37.037 | 25.13 | 18.07 | 41.67 | 3.06 |
206 | 215 | 9.462606 | TCTTAGATTTGTCTAGACACAGATGTA | 57.537 | 33.333 | 25.13 | 17.19 | 41.67 | 2.29 |
209 | 218 | 8.532186 | AGATTTGTCTAGACACAGATGTATCT | 57.468 | 34.615 | 25.13 | 18.00 | 41.67 | 1.98 |
210 | 219 | 9.634021 | AGATTTGTCTAGACACAGATGTATCTA | 57.366 | 33.333 | 25.13 | 3.21 | 41.67 | 1.98 |
236 | 245 | 6.963049 | ACTAAAACGTGACTTGATACATCC | 57.037 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
237 | 246 | 4.921470 | AAAACGTGACTTGATACATCCG | 57.079 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
238 | 247 | 3.587797 | AACGTGACTTGATACATCCGT | 57.412 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
239 | 248 | 4.707030 | AACGTGACTTGATACATCCGTA | 57.293 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
240 | 249 | 4.913335 | ACGTGACTTGATACATCCGTAT | 57.087 | 40.909 | 0.00 | 0.00 | 41.16 | 3.06 |
256 | 265 | 8.693120 | ACATCCGTATCTAGACAAATCTAAGA | 57.307 | 34.615 | 0.00 | 0.00 | 36.98 | 2.10 |
257 | 266 | 8.569641 | ACATCCGTATCTAGACAAATCTAAGAC | 58.430 | 37.037 | 0.00 | 0.00 | 36.98 | 3.01 |
258 | 267 | 8.568794 | CATCCGTATCTAGACAAATCTAAGACA | 58.431 | 37.037 | 0.00 | 0.00 | 36.98 | 3.41 |
259 | 268 | 8.515695 | TCCGTATCTAGACAAATCTAAGACAA | 57.484 | 34.615 | 0.00 | 0.00 | 36.98 | 3.18 |
260 | 269 | 8.963725 | TCCGTATCTAGACAAATCTAAGACAAA | 58.036 | 33.333 | 0.00 | 0.00 | 36.98 | 2.83 |
261 | 270 | 9.582431 | CCGTATCTAGACAAATCTAAGACAAAA | 57.418 | 33.333 | 0.00 | 0.00 | 36.98 | 2.44 |
276 | 285 | 9.151471 | TCTAAGACAAAAATTATGAGACGAAGG | 57.849 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
277 | 286 | 6.743575 | AGACAAAAATTATGAGACGAAGGG | 57.256 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
278 | 287 | 6.472887 | AGACAAAAATTATGAGACGAAGGGA | 58.527 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
279 | 288 | 6.595716 | AGACAAAAATTATGAGACGAAGGGAG | 59.404 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
280 | 289 | 6.238648 | ACAAAAATTATGAGACGAAGGGAGT | 58.761 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
281 | 290 | 7.391620 | ACAAAAATTATGAGACGAAGGGAGTA | 58.608 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
282 | 291 | 7.549488 | ACAAAAATTATGAGACGAAGGGAGTAG | 59.451 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
283 | 292 | 6.793505 | AAATTATGAGACGAAGGGAGTAGT | 57.206 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
284 | 293 | 6.793505 | AATTATGAGACGAAGGGAGTAGTT | 57.206 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
289 | 298 | 5.014858 | TGAGACGAAGGGAGTAGTTTACAT | 58.985 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
291 | 300 | 6.660521 | TGAGACGAAGGGAGTAGTTTACATTA | 59.339 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
306 | 315 | 8.073355 | AGTTTACATTAACAAAGTGAGACGAG | 57.927 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
310 | 319 | 6.157211 | ACATTAACAAAGTGAGACGAGGTAG | 58.843 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
351 | 368 | 2.049433 | CGGTGACCACGACACTCC | 60.049 | 66.667 | 1.11 | 0.00 | 38.20 | 3.85 |
359 | 376 | 1.589630 | CACGACACTCCCCGATTGA | 59.410 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
440 | 476 | 2.102925 | CCCCATGCCATGATTGGTTAAC | 59.897 | 50.000 | 6.18 | 0.00 | 45.57 | 2.01 |
441 | 477 | 2.102925 | CCCATGCCATGATTGGTTAACC | 59.897 | 50.000 | 18.27 | 18.27 | 45.57 | 2.85 |
442 | 478 | 2.102925 | CCATGCCATGATTGGTTAACCC | 59.897 | 50.000 | 21.97 | 7.29 | 45.57 | 4.11 |
443 | 479 | 2.612285 | TGCCATGATTGGTTAACCCA | 57.388 | 45.000 | 21.97 | 11.81 | 45.57 | 4.51 |
481 | 517 | 8.750515 | TGGATTAGATTGAATTGCTTATCACA | 57.249 | 30.769 | 0.00 | 0.00 | 0.00 | 3.58 |
482 | 518 | 9.358406 | TGGATTAGATTGAATTGCTTATCACAT | 57.642 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
488 | 524 | 9.346005 | AGATTGAATTGCTTATCACATATGTCA | 57.654 | 29.630 | 5.07 | 0.00 | 0.00 | 3.58 |
489 | 525 | 9.390795 | GATTGAATTGCTTATCACATATGTCAC | 57.609 | 33.333 | 5.07 | 0.00 | 0.00 | 3.67 |
490 | 526 | 6.947258 | TGAATTGCTTATCACATATGTCACG | 58.053 | 36.000 | 5.07 | 0.00 | 0.00 | 4.35 |
491 | 527 | 6.538381 | TGAATTGCTTATCACATATGTCACGT | 59.462 | 34.615 | 5.07 | 0.00 | 0.00 | 4.49 |
492 | 528 | 6.925610 | ATTGCTTATCACATATGTCACGTT | 57.074 | 33.333 | 5.07 | 0.00 | 0.00 | 3.99 |
493 | 529 | 5.717038 | TGCTTATCACATATGTCACGTTG | 57.283 | 39.130 | 5.07 | 0.00 | 0.00 | 4.10 |
494 | 530 | 5.175127 | TGCTTATCACATATGTCACGTTGT | 58.825 | 37.500 | 5.07 | 0.00 | 0.00 | 3.32 |
495 | 531 | 6.334202 | TGCTTATCACATATGTCACGTTGTA | 58.666 | 36.000 | 5.07 | 0.00 | 0.00 | 2.41 |
496 | 532 | 6.814146 | TGCTTATCACATATGTCACGTTGTAA | 59.186 | 34.615 | 5.07 | 0.00 | 0.00 | 2.41 |
497 | 533 | 7.010091 | TGCTTATCACATATGTCACGTTGTAAG | 59.990 | 37.037 | 5.07 | 0.00 | 0.00 | 2.34 |
498 | 534 | 5.718649 | ATCACATATGTCACGTTGTAAGC | 57.281 | 39.130 | 5.07 | 0.00 | 0.00 | 3.09 |
499 | 535 | 4.816392 | TCACATATGTCACGTTGTAAGCT | 58.184 | 39.130 | 5.07 | 0.00 | 0.00 | 3.74 |
500 | 536 | 5.956642 | TCACATATGTCACGTTGTAAGCTA | 58.043 | 37.500 | 5.07 | 0.00 | 0.00 | 3.32 |
501 | 537 | 6.391537 | TCACATATGTCACGTTGTAAGCTAA | 58.608 | 36.000 | 5.07 | 0.00 | 0.00 | 3.09 |
502 | 538 | 7.039270 | TCACATATGTCACGTTGTAAGCTAAT | 58.961 | 34.615 | 5.07 | 0.00 | 0.00 | 1.73 |
503 | 539 | 7.222031 | TCACATATGTCACGTTGTAAGCTAATC | 59.778 | 37.037 | 5.07 | 0.00 | 0.00 | 1.75 |
504 | 540 | 7.010091 | CACATATGTCACGTTGTAAGCTAATCA | 59.990 | 37.037 | 5.07 | 0.00 | 0.00 | 2.57 |
505 | 541 | 7.222805 | ACATATGTCACGTTGTAAGCTAATCAG | 59.777 | 37.037 | 1.41 | 0.00 | 0.00 | 2.90 |
506 | 542 | 4.878439 | TGTCACGTTGTAAGCTAATCAGT | 58.122 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
507 | 543 | 5.294356 | TGTCACGTTGTAAGCTAATCAGTT | 58.706 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
508 | 544 | 5.756347 | TGTCACGTTGTAAGCTAATCAGTTT | 59.244 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
509 | 545 | 6.259167 | TGTCACGTTGTAAGCTAATCAGTTTT | 59.741 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
510 | 546 | 6.573725 | GTCACGTTGTAAGCTAATCAGTTTTG | 59.426 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
511 | 547 | 5.339611 | CACGTTGTAAGCTAATCAGTTTTGC | 59.660 | 40.000 | 0.00 | 0.00 | 36.47 | 3.68 |
512 | 548 | 5.238650 | ACGTTGTAAGCTAATCAGTTTTGCT | 59.761 | 36.000 | 0.00 | 0.00 | 46.35 | 3.91 |
513 | 549 | 6.425721 | ACGTTGTAAGCTAATCAGTTTTGCTA | 59.574 | 34.615 | 1.24 | 0.00 | 44.12 | 3.49 |
514 | 550 | 7.041644 | ACGTTGTAAGCTAATCAGTTTTGCTAA | 60.042 | 33.333 | 1.24 | 0.00 | 44.12 | 3.09 |
515 | 551 | 7.478667 | CGTTGTAAGCTAATCAGTTTTGCTAAG | 59.521 | 37.037 | 1.24 | 0.00 | 44.12 | 2.18 |
516 | 552 | 7.979444 | TGTAAGCTAATCAGTTTTGCTAAGT | 57.021 | 32.000 | 1.24 | 0.00 | 44.12 | 2.24 |
517 | 553 | 8.029642 | TGTAAGCTAATCAGTTTTGCTAAGTC | 57.970 | 34.615 | 1.24 | 0.00 | 44.12 | 3.01 |
518 | 554 | 7.878127 | TGTAAGCTAATCAGTTTTGCTAAGTCT | 59.122 | 33.333 | 1.24 | 0.00 | 44.12 | 3.24 |
519 | 555 | 7.751768 | AAGCTAATCAGTTTTGCTAAGTCTT | 57.248 | 32.000 | 1.24 | 0.00 | 44.12 | 3.01 |
520 | 556 | 8.848474 | AAGCTAATCAGTTTTGCTAAGTCTTA | 57.152 | 30.769 | 1.24 | 0.00 | 44.12 | 2.10 |
521 | 557 | 8.848474 | AGCTAATCAGTTTTGCTAAGTCTTAA | 57.152 | 30.769 | 0.00 | 0.00 | 43.27 | 1.85 |
522 | 558 | 9.454859 | AGCTAATCAGTTTTGCTAAGTCTTAAT | 57.545 | 29.630 | 0.00 | 0.00 | 43.27 | 1.40 |
523 | 559 | 9.709600 | GCTAATCAGTTTTGCTAAGTCTTAATC | 57.290 | 33.333 | 0.00 | 0.00 | 33.88 | 1.75 |
524 | 560 | 9.907576 | CTAATCAGTTTTGCTAAGTCTTAATCG | 57.092 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
525 | 561 | 8.547967 | AATCAGTTTTGCTAAGTCTTAATCGA | 57.452 | 30.769 | 0.00 | 0.00 | 0.00 | 3.59 |
526 | 562 | 7.347508 | TCAGTTTTGCTAAGTCTTAATCGAC | 57.652 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
527 | 563 | 6.926826 | TCAGTTTTGCTAAGTCTTAATCGACA | 59.073 | 34.615 | 0.00 | 0.00 | 36.38 | 4.35 |
528 | 564 | 7.602644 | TCAGTTTTGCTAAGTCTTAATCGACAT | 59.397 | 33.333 | 0.00 | 0.00 | 36.38 | 3.06 |
529 | 565 | 8.869897 | CAGTTTTGCTAAGTCTTAATCGACATA | 58.130 | 33.333 | 0.00 | 0.00 | 36.38 | 2.29 |
530 | 566 | 9.431887 | AGTTTTGCTAAGTCTTAATCGACATAA | 57.568 | 29.630 | 0.00 | 0.00 | 36.38 | 1.90 |
533 | 569 | 8.997621 | TTGCTAAGTCTTAATCGACATAAACT | 57.002 | 30.769 | 0.00 | 0.00 | 36.38 | 2.66 |
534 | 570 | 8.997621 | TGCTAAGTCTTAATCGACATAAACTT | 57.002 | 30.769 | 15.85 | 15.85 | 36.38 | 2.66 |
550 | 586 | 8.912787 | ACATAAACTTAGTTATGTCTCAGTCG | 57.087 | 34.615 | 0.00 | 0.00 | 46.83 | 4.18 |
551 | 587 | 8.737175 | ACATAAACTTAGTTATGTCTCAGTCGA | 58.263 | 33.333 | 0.00 | 0.00 | 46.83 | 4.20 |
552 | 588 | 9.737427 | CATAAACTTAGTTATGTCTCAGTCGAT | 57.263 | 33.333 | 0.00 | 0.00 | 36.91 | 3.59 |
553 | 589 | 9.737427 | ATAAACTTAGTTATGTCTCAGTCGATG | 57.263 | 33.333 | 0.00 | 0.00 | 0.00 | 3.84 |
554 | 590 | 6.761099 | ACTTAGTTATGTCTCAGTCGATGT | 57.239 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
555 | 591 | 7.159322 | ACTTAGTTATGTCTCAGTCGATGTT | 57.841 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
556 | 592 | 8.277490 | ACTTAGTTATGTCTCAGTCGATGTTA | 57.723 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
557 | 593 | 8.904834 | ACTTAGTTATGTCTCAGTCGATGTTAT | 58.095 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
561 | 597 | 9.900710 | AGTTATGTCTCAGTCGATGTTATATTC | 57.099 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
562 | 598 | 8.841822 | GTTATGTCTCAGTCGATGTTATATTCG | 58.158 | 37.037 | 0.00 | 0.00 | 36.72 | 3.34 |
563 | 599 | 6.373186 | TGTCTCAGTCGATGTTATATTCGT | 57.627 | 37.500 | 0.00 | 0.00 | 36.74 | 3.85 |
564 | 600 | 7.486802 | TGTCTCAGTCGATGTTATATTCGTA | 57.513 | 36.000 | 0.00 | 0.00 | 36.74 | 3.43 |
565 | 601 | 7.922837 | TGTCTCAGTCGATGTTATATTCGTAA | 58.077 | 34.615 | 0.00 | 0.00 | 36.74 | 3.18 |
566 | 602 | 8.400186 | TGTCTCAGTCGATGTTATATTCGTAAA | 58.600 | 33.333 | 0.00 | 0.00 | 36.74 | 2.01 |
567 | 603 | 9.229784 | GTCTCAGTCGATGTTATATTCGTAAAA | 57.770 | 33.333 | 0.00 | 0.00 | 36.74 | 1.52 |
568 | 604 | 9.961265 | TCTCAGTCGATGTTATATTCGTAAAAT | 57.039 | 29.630 | 0.00 | 0.00 | 36.74 | 1.82 |
570 | 606 | 9.738832 | TCAGTCGATGTTATATTCGTAAAATCA | 57.261 | 29.630 | 0.00 | 0.00 | 36.74 | 2.57 |
584 | 620 | 7.637709 | TCGTAAAATCATACATCAAGATCCG | 57.362 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
585 | 621 | 7.207383 | TCGTAAAATCATACATCAAGATCCGT | 58.793 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
586 | 622 | 7.169140 | TCGTAAAATCATACATCAAGATCCGTG | 59.831 | 37.037 | 0.00 | 0.00 | 0.00 | 4.94 |
587 | 623 | 7.042725 | CGTAAAATCATACATCAAGATCCGTGT | 60.043 | 37.037 | 0.00 | 0.00 | 0.00 | 4.49 |
588 | 624 | 9.256477 | GTAAAATCATACATCAAGATCCGTGTA | 57.744 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
589 | 625 | 8.731275 | AAAATCATACATCAAGATCCGTGTAA | 57.269 | 30.769 | 0.00 | 0.00 | 31.57 | 2.41 |
590 | 626 | 8.731275 | AAATCATACATCAAGATCCGTGTAAA | 57.269 | 30.769 | 0.00 | 0.00 | 31.57 | 2.01 |
591 | 627 | 8.731275 | AATCATACATCAAGATCCGTGTAAAA | 57.269 | 30.769 | 0.00 | 0.00 | 31.57 | 1.52 |
592 | 628 | 8.908786 | ATCATACATCAAGATCCGTGTAAAAT | 57.091 | 30.769 | 0.00 | 0.00 | 31.57 | 1.82 |
593 | 629 | 8.731275 | TCATACATCAAGATCCGTGTAAAATT | 57.269 | 30.769 | 0.00 | 0.00 | 31.57 | 1.82 |
594 | 630 | 9.173021 | TCATACATCAAGATCCGTGTAAAATTT | 57.827 | 29.630 | 0.00 | 0.00 | 31.57 | 1.82 |
595 | 631 | 9.787532 | CATACATCAAGATCCGTGTAAAATTTT | 57.212 | 29.630 | 8.75 | 8.75 | 31.57 | 1.82 |
597 | 633 | 8.110860 | ACATCAAGATCCGTGTAAAATTTTCT | 57.889 | 30.769 | 6.72 | 0.00 | 0.00 | 2.52 |
598 | 634 | 8.576442 | ACATCAAGATCCGTGTAAAATTTTCTT | 58.424 | 29.630 | 6.72 | 0.00 | 0.00 | 2.52 |
599 | 635 | 9.410556 | CATCAAGATCCGTGTAAAATTTTCTTT | 57.589 | 29.630 | 6.72 | 0.00 | 0.00 | 2.52 |
601 | 637 | 9.887406 | TCAAGATCCGTGTAAAATTTTCTTTAC | 57.113 | 29.630 | 6.72 | 0.56 | 40.63 | 2.01 |
602 | 638 | 9.672086 | CAAGATCCGTGTAAAATTTTCTTTACA | 57.328 | 29.630 | 6.72 | 3.41 | 45.19 | 2.41 |
663 | 699 | 6.589830 | AATTGATTAAATCTCAGTCGACCG | 57.410 | 37.500 | 13.01 | 1.05 | 0.00 | 4.79 |
664 | 700 | 4.976224 | TGATTAAATCTCAGTCGACCGA | 57.024 | 40.909 | 13.01 | 6.63 | 0.00 | 4.69 |
665 | 701 | 4.921547 | TGATTAAATCTCAGTCGACCGAG | 58.078 | 43.478 | 20.59 | 20.59 | 0.00 | 4.63 |
666 | 702 | 4.638865 | TGATTAAATCTCAGTCGACCGAGA | 59.361 | 41.667 | 28.64 | 28.64 | 42.25 | 4.04 |
667 | 703 | 2.923605 | AAATCTCAGTCGACCGAGAC | 57.076 | 50.000 | 28.97 | 0.00 | 40.92 | 3.36 |
668 | 704 | 1.096416 | AATCTCAGTCGACCGAGACC | 58.904 | 55.000 | 28.97 | 0.00 | 40.92 | 3.85 |
669 | 705 | 0.253610 | ATCTCAGTCGACCGAGACCT | 59.746 | 55.000 | 28.97 | 14.90 | 40.92 | 3.85 |
670 | 706 | 0.391395 | TCTCAGTCGACCGAGACCTC | 60.391 | 60.000 | 24.28 | 0.00 | 41.83 | 3.85 |
671 | 707 | 1.370587 | CTCAGTCGACCGAGACCTCC | 61.371 | 65.000 | 21.82 | 0.00 | 41.83 | 4.30 |
672 | 708 | 2.045143 | AGTCGACCGAGACCTCCC | 60.045 | 66.667 | 13.01 | 0.00 | 41.83 | 4.30 |
673 | 709 | 3.139469 | GTCGACCGAGACCTCCCC | 61.139 | 72.222 | 3.51 | 0.00 | 35.22 | 4.81 |
674 | 710 | 4.437587 | TCGACCGAGACCTCCCCC | 62.438 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
675 | 711 | 4.753662 | CGACCGAGACCTCCCCCA | 62.754 | 72.222 | 0.00 | 0.00 | 0.00 | 4.96 |
676 | 712 | 3.075641 | GACCGAGACCTCCCCCAC | 61.076 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
692 | 728 | 2.359143 | CCCCACCCAATATCACCAACAT | 60.359 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
721 | 759 | 2.504175 | ACATACAAGCCCACCGACTAAT | 59.496 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
738 | 778 | 1.732941 | AATGCAACGATCGGCTACAA | 58.267 | 45.000 | 20.98 | 0.00 | 0.00 | 2.41 |
746 | 786 | 1.535437 | CGATCGGCTACAACACCTACC | 60.535 | 57.143 | 7.38 | 0.00 | 0.00 | 3.18 |
747 | 787 | 0.828677 | ATCGGCTACAACACCTACCC | 59.171 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
748 | 788 | 1.219935 | CGGCTACAACACCTACCCC | 59.780 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
749 | 789 | 1.605992 | GGCTACAACACCTACCCCC | 59.394 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
774 | 814 | 2.029369 | TTAACGTTCCCGCGCTGT | 59.971 | 55.556 | 2.82 | 0.00 | 37.70 | 4.40 |
829 | 869 | 0.816825 | CAGTGCCAGTGTCTGCTTGT | 60.817 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
830 | 870 | 0.533755 | AGTGCCAGTGTCTGCTTGTC | 60.534 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
833 | 873 | 1.302832 | CCAGTGTCTGCTTGTCCCC | 60.303 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
835 | 875 | 1.462238 | AGTGTCTGCTTGTCCCCCT | 60.462 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
842 | 882 | 0.909610 | TGCTTGTCCCCCTTCGATCT | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
845 | 885 | 2.104963 | GCTTGTCCCCCTTCGATCTATT | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
846 | 886 | 3.323979 | GCTTGTCCCCCTTCGATCTATTA | 59.676 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
867 | 907 | 0.390860 | ATCGCCTTCTTCCTCCATCG | 59.609 | 55.000 | 0.00 | 0.00 | 0.00 | 3.84 |
934 | 974 | 9.859427 | CAAGACATCAACAACAAAACCATATAT | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
980 | 1020 | 7.742767 | TGGTAAAGAAAGAGTAAGCTACCTTT | 58.257 | 34.615 | 0.00 | 0.00 | 34.29 | 3.11 |
1038 | 1080 | 0.391661 | GCTCCAAGATCGTCAAGCCA | 60.392 | 55.000 | 1.66 | 0.00 | 0.00 | 4.75 |
1203 | 1245 | 3.050275 | GCCCAAGTGCTGTCCGTC | 61.050 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1206 | 1248 | 0.537188 | CCCAAGTGCTGTCCGTCTAT | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1221 | 1263 | 0.752009 | TCTATCGCCTCTTCGCTGGT | 60.752 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1467 | 1509 | 2.108514 | CAACCATGCCGTCGCTGAT | 61.109 | 57.895 | 0.00 | 0.00 | 35.36 | 2.90 |
1605 | 1658 | 1.550065 | CGATCGTCGAGTTTGAGCAT | 58.450 | 50.000 | 7.03 | 0.00 | 43.74 | 3.79 |
1623 | 1676 | 0.250640 | ATCGGGGCGTCGAGTACTAT | 60.251 | 55.000 | 0.00 | 0.00 | 42.69 | 2.12 |
2324 | 2392 | 5.537188 | CTGCTACTCCATGGACTAAAGATC | 58.463 | 45.833 | 11.44 | 0.00 | 0.00 | 2.75 |
2326 | 2394 | 5.069648 | TGCTACTCCATGGACTAAAGATCAG | 59.930 | 44.000 | 11.44 | 0.00 | 0.00 | 2.90 |
2332 | 2400 | 6.763355 | TCCATGGACTAAAGATCAGCTAATC | 58.237 | 40.000 | 11.44 | 0.00 | 0.00 | 1.75 |
2334 | 2402 | 7.016957 | TCCATGGACTAAAGATCAGCTAATCAT | 59.983 | 37.037 | 11.44 | 0.00 | 0.00 | 2.45 |
2335 | 2403 | 7.333921 | CCATGGACTAAAGATCAGCTAATCATC | 59.666 | 40.741 | 5.56 | 0.00 | 0.00 | 2.92 |
2336 | 2404 | 7.365497 | TGGACTAAAGATCAGCTAATCATCA | 57.635 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2337 | 2405 | 7.795047 | TGGACTAAAGATCAGCTAATCATCAA | 58.205 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2338 | 2406 | 7.930325 | TGGACTAAAGATCAGCTAATCATCAAG | 59.070 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
2339 | 2407 | 7.095271 | GGACTAAAGATCAGCTAATCATCAAGC | 60.095 | 40.741 | 0.00 | 0.00 | 39.08 | 4.01 |
2340 | 2408 | 7.278135 | ACTAAAGATCAGCTAATCATCAAGCA | 58.722 | 34.615 | 0.00 | 0.00 | 41.32 | 3.91 |
2341 | 2409 | 6.621316 | AAAGATCAGCTAATCATCAAGCAG | 57.379 | 37.500 | 0.00 | 0.00 | 41.32 | 4.24 |
2342 | 2410 | 4.066490 | AGATCAGCTAATCATCAAGCAGC | 58.934 | 43.478 | 0.00 | 0.00 | 41.32 | 5.25 |
2343 | 2411 | 3.271055 | TCAGCTAATCATCAAGCAGCA | 57.729 | 42.857 | 0.00 | 0.00 | 41.32 | 4.41 |
2344 | 2412 | 3.613030 | TCAGCTAATCATCAAGCAGCAA | 58.387 | 40.909 | 0.00 | 0.00 | 41.32 | 3.91 |
2368 | 2436 | 1.779569 | GCGTGCGGCTACATATTACT | 58.220 | 50.000 | 0.00 | 0.00 | 39.11 | 2.24 |
2369 | 2437 | 1.455786 | GCGTGCGGCTACATATTACTG | 59.544 | 52.381 | 0.00 | 0.00 | 39.11 | 2.74 |
2370 | 2438 | 2.739292 | CGTGCGGCTACATATTACTGT | 58.261 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
2410 | 2478 | 5.663795 | TCAGCGATTTGAGCTTAATCATC | 57.336 | 39.130 | 17.51 | 7.70 | 44.06 | 2.92 |
2492 | 2560 | 4.151157 | TCCGTGTATCTATCGTATCACGTG | 59.849 | 45.833 | 9.94 | 9.94 | 44.23 | 4.49 |
2497 | 2565 | 8.538039 | CGTGTATCTATCGTATCACGTGTATAT | 58.462 | 37.037 | 16.51 | 4.34 | 43.14 | 0.86 |
2617 | 2688 | 1.280066 | CTGTGCTGTGTTTTGGTTGC | 58.720 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2647 | 2719 | 8.592105 | TCTTTTCCATTTGTGATTGATTTGAC | 57.408 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
2659 | 2731 | 7.971722 | TGTGATTGATTTGACATGATTGATCAC | 59.028 | 33.333 | 0.00 | 8.39 | 40.03 | 3.06 |
2679 | 2751 | 1.832608 | CCCCTCGATCATGGACGGA | 60.833 | 63.158 | 11.17 | 0.00 | 0.00 | 4.69 |
2725 | 2808 | 0.235665 | ATGTTGCTTCTGTTGTCGCG | 59.764 | 50.000 | 0.00 | 0.00 | 0.00 | 5.87 |
2745 | 2828 | 2.040178 | GTACTGTAGCCTAGCCATGGT | 58.960 | 52.381 | 14.67 | 2.69 | 0.00 | 3.55 |
2754 | 2837 | 4.147321 | AGCCTAGCCATGGTAATCAAATG | 58.853 | 43.478 | 14.67 | 0.00 | 0.00 | 2.32 |
2760 | 2843 | 3.128589 | GCCATGGTAATCAAATGTCGTGT | 59.871 | 43.478 | 14.67 | 0.00 | 0.00 | 4.49 |
2876 | 2959 | 4.647424 | ACAGAGGATCGTCTGAATTCTC | 57.353 | 45.455 | 38.66 | 15.09 | 46.02 | 2.87 |
3012 | 3099 | 2.308570 | ACCCCTGTGATTATGAGCAACA | 59.691 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
3046 | 3133 | 2.480555 | CGCAGCCGAATCACAACC | 59.519 | 61.111 | 0.00 | 0.00 | 36.29 | 3.77 |
3053 | 3146 | 3.057315 | CAGCCGAATCACAACCAAAATCT | 60.057 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
3103 | 3197 | 9.513906 | AGTTTCCAAAAATTCTCAAAGGAAAAA | 57.486 | 25.926 | 0.00 | 0.00 | 43.02 | 1.94 |
3107 | 3201 | 9.460019 | TCCAAAAATTCTCAAAGGAAAAACATT | 57.540 | 25.926 | 0.00 | 0.00 | 0.00 | 2.71 |
3111 | 3205 | 8.454570 | AAATTCTCAAAGGAAAAACATTGCAT | 57.545 | 26.923 | 0.00 | 0.00 | 0.00 | 3.96 |
3113 | 3207 | 4.751098 | TCTCAAAGGAAAAACATTGCATGC | 59.249 | 37.500 | 11.82 | 11.82 | 0.00 | 4.06 |
3226 | 3334 | 6.845302 | TGATGTTGTTTTGCTCATCACTATC | 58.155 | 36.000 | 0.00 | 0.00 | 40.73 | 2.08 |
3231 | 3339 | 6.441093 | TGTTTTGCTCATCACTATCCATTC | 57.559 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
3235 | 3343 | 8.844244 | GTTTTGCTCATCACTATCCATTCTTAT | 58.156 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
3292 | 3401 | 7.653311 | AGTTTGACCTAGAAAATTTGCATGTTC | 59.347 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 2.943036 | AGATCCGAGAGTCCTACTCC | 57.057 | 55.000 | 3.49 | 0.00 | 46.18 | 3.85 |
5 | 6 | 6.834451 | TGAAATTTAGATCCGAGAGTCCTACT | 59.166 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
6 | 7 | 7.040473 | TGAAATTTAGATCCGAGAGTCCTAC | 57.960 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
7 | 8 | 7.308649 | CGATGAAATTTAGATCCGAGAGTCCTA | 60.309 | 40.741 | 0.00 | 0.00 | 0.00 | 2.94 |
8 | 9 | 6.515862 | CGATGAAATTTAGATCCGAGAGTCCT | 60.516 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
9 | 10 | 5.631512 | CGATGAAATTTAGATCCGAGAGTCC | 59.368 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
10 | 11 | 6.143118 | CACGATGAAATTTAGATCCGAGAGTC | 59.857 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
11 | 12 | 5.980116 | CACGATGAAATTTAGATCCGAGAGT | 59.020 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
12 | 13 | 5.980116 | ACACGATGAAATTTAGATCCGAGAG | 59.020 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
13 | 14 | 5.902681 | ACACGATGAAATTTAGATCCGAGA | 58.097 | 37.500 | 0.00 | 0.00 | 0.00 | 4.04 |
14 | 15 | 7.139392 | TCTACACGATGAAATTTAGATCCGAG | 58.861 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
15 | 16 | 7.034685 | TCTACACGATGAAATTTAGATCCGA | 57.965 | 36.000 | 0.00 | 0.00 | 0.00 | 4.55 |
62 | 64 | 9.104965 | GTATATAAAATGCTATATTCCCGCACA | 57.895 | 33.333 | 0.00 | 0.00 | 36.37 | 4.57 |
63 | 65 | 9.326413 | AGTATATAAAATGCTATATTCCCGCAC | 57.674 | 33.333 | 0.00 | 0.00 | 36.37 | 5.34 |
81 | 83 | 6.266103 | CGGGACAACTTACTGGGAGTATATAA | 59.734 | 42.308 | 0.00 | 0.00 | 29.64 | 0.98 |
114 | 123 | 4.405680 | AGCTGCACATACACTGACCTATTA | 59.594 | 41.667 | 1.02 | 0.00 | 0.00 | 0.98 |
117 | 126 | 2.094026 | CAGCTGCACATACACTGACCTA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
119 | 128 | 1.081892 | CAGCTGCACATACACTGACC | 58.918 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
124 | 133 | 2.413112 | CAGTGTACAGCTGCACATACAC | 59.587 | 50.000 | 26.25 | 26.25 | 45.04 | 2.90 |
157 | 166 | 3.618690 | AGAATTTTGAGACGGAGGGAG | 57.381 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
159 | 168 | 3.412386 | ACAAGAATTTTGAGACGGAGGG | 58.588 | 45.455 | 7.18 | 0.00 | 0.00 | 4.30 |
160 | 169 | 4.319177 | AGACAAGAATTTTGAGACGGAGG | 58.681 | 43.478 | 7.18 | 0.00 | 0.00 | 4.30 |
161 | 170 | 5.931441 | AAGACAAGAATTTTGAGACGGAG | 57.069 | 39.130 | 7.18 | 0.00 | 0.00 | 4.63 |
162 | 171 | 6.755206 | TCTAAGACAAGAATTTTGAGACGGA | 58.245 | 36.000 | 7.18 | 0.00 | 0.00 | 4.69 |
163 | 172 | 7.602517 | ATCTAAGACAAGAATTTTGAGACGG | 57.397 | 36.000 | 7.18 | 0.00 | 0.00 | 4.79 |
164 | 173 | 9.322776 | CAAATCTAAGACAAGAATTTTGAGACG | 57.677 | 33.333 | 7.18 | 0.00 | 31.51 | 4.18 |
173 | 182 | 9.646427 | GTGTCTAGACAAATCTAAGACAAGAAT | 57.354 | 33.333 | 26.74 | 0.00 | 41.73 | 2.40 |
174 | 183 | 8.638873 | TGTGTCTAGACAAATCTAAGACAAGAA | 58.361 | 33.333 | 26.74 | 0.00 | 41.73 | 2.52 |
175 | 184 | 8.178313 | TGTGTCTAGACAAATCTAAGACAAGA | 57.822 | 34.615 | 26.74 | 0.00 | 41.73 | 3.02 |
176 | 185 | 8.300286 | TCTGTGTCTAGACAAATCTAAGACAAG | 58.700 | 37.037 | 26.74 | 6.24 | 41.73 | 3.16 |
177 | 186 | 8.178313 | TCTGTGTCTAGACAAATCTAAGACAA | 57.822 | 34.615 | 26.74 | 6.23 | 41.73 | 3.18 |
178 | 187 | 7.761038 | TCTGTGTCTAGACAAATCTAAGACA | 57.239 | 36.000 | 26.74 | 15.38 | 43.77 | 3.41 |
179 | 188 | 8.247562 | ACATCTGTGTCTAGACAAATCTAAGAC | 58.752 | 37.037 | 26.74 | 11.67 | 43.77 | 3.01 |
180 | 189 | 8.354711 | ACATCTGTGTCTAGACAAATCTAAGA | 57.645 | 34.615 | 26.74 | 19.94 | 43.77 | 2.10 |
183 | 192 | 9.634021 | AGATACATCTGTGTCTAGACAAATCTA | 57.366 | 33.333 | 26.74 | 12.69 | 43.30 | 1.98 |
184 | 193 | 8.532186 | AGATACATCTGTGTCTAGACAAATCT | 57.468 | 34.615 | 26.74 | 16.37 | 43.30 | 2.40 |
210 | 219 | 9.095065 | GGATGTATCAAGTCACGTTTTAGTATT | 57.905 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
211 | 220 | 7.434307 | CGGATGTATCAAGTCACGTTTTAGTAT | 59.566 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
212 | 221 | 6.748658 | CGGATGTATCAAGTCACGTTTTAGTA | 59.251 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
213 | 222 | 5.575606 | CGGATGTATCAAGTCACGTTTTAGT | 59.424 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
214 | 223 | 5.575606 | ACGGATGTATCAAGTCACGTTTTAG | 59.424 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
215 | 224 | 5.472148 | ACGGATGTATCAAGTCACGTTTTA | 58.528 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
216 | 225 | 4.312443 | ACGGATGTATCAAGTCACGTTTT | 58.688 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
217 | 226 | 3.921677 | ACGGATGTATCAAGTCACGTTT | 58.078 | 40.909 | 0.00 | 0.00 | 0.00 | 3.60 |
218 | 227 | 3.587797 | ACGGATGTATCAAGTCACGTT | 57.412 | 42.857 | 0.00 | 0.00 | 0.00 | 3.99 |
219 | 228 | 4.913335 | ATACGGATGTATCAAGTCACGT | 57.087 | 40.909 | 0.00 | 0.00 | 36.56 | 4.49 |
230 | 239 | 9.788889 | TCTTAGATTTGTCTAGATACGGATGTA | 57.211 | 33.333 | 0.00 | 0.00 | 34.45 | 2.29 |
231 | 240 | 8.569641 | GTCTTAGATTTGTCTAGATACGGATGT | 58.430 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
232 | 241 | 8.568794 | TGTCTTAGATTTGTCTAGATACGGATG | 58.431 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
233 | 242 | 8.693120 | TGTCTTAGATTTGTCTAGATACGGAT | 57.307 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
234 | 243 | 8.515695 | TTGTCTTAGATTTGTCTAGATACGGA | 57.484 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
235 | 244 | 9.582431 | TTTTGTCTTAGATTTGTCTAGATACGG | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
250 | 259 | 9.151471 | CCTTCGTCTCATAATTTTTGTCTTAGA | 57.849 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
251 | 260 | 8.391106 | CCCTTCGTCTCATAATTTTTGTCTTAG | 58.609 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
252 | 261 | 8.098286 | TCCCTTCGTCTCATAATTTTTGTCTTA | 58.902 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
253 | 262 | 6.940298 | TCCCTTCGTCTCATAATTTTTGTCTT | 59.060 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
254 | 263 | 6.472887 | TCCCTTCGTCTCATAATTTTTGTCT | 58.527 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
255 | 264 | 6.371825 | ACTCCCTTCGTCTCATAATTTTTGTC | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
256 | 265 | 6.238648 | ACTCCCTTCGTCTCATAATTTTTGT | 58.761 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
257 | 266 | 6.743575 | ACTCCCTTCGTCTCATAATTTTTG | 57.256 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
258 | 267 | 7.621796 | ACTACTCCCTTCGTCTCATAATTTTT | 58.378 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
259 | 268 | 7.184067 | ACTACTCCCTTCGTCTCATAATTTT | 57.816 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
260 | 269 | 6.793505 | ACTACTCCCTTCGTCTCATAATTT | 57.206 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
261 | 270 | 6.793505 | AACTACTCCCTTCGTCTCATAATT | 57.206 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
262 | 271 | 6.793505 | AAACTACTCCCTTCGTCTCATAAT | 57.206 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
263 | 272 | 6.660521 | TGTAAACTACTCCCTTCGTCTCATAA | 59.339 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
264 | 273 | 6.182627 | TGTAAACTACTCCCTTCGTCTCATA | 58.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
265 | 274 | 5.014858 | TGTAAACTACTCCCTTCGTCTCAT | 58.985 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
266 | 275 | 4.401022 | TGTAAACTACTCCCTTCGTCTCA | 58.599 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
267 | 276 | 5.579564 | ATGTAAACTACTCCCTTCGTCTC | 57.420 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
268 | 277 | 5.997384 | AATGTAAACTACTCCCTTCGTCT | 57.003 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
269 | 278 | 7.092716 | TGTTAATGTAAACTACTCCCTTCGTC | 58.907 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
270 | 279 | 6.996509 | TGTTAATGTAAACTACTCCCTTCGT | 58.003 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
271 | 280 | 7.894376 | TTGTTAATGTAAACTACTCCCTTCG | 57.106 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
272 | 281 | 9.281371 | ACTTTGTTAATGTAAACTACTCCCTTC | 57.719 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
273 | 282 | 9.063615 | CACTTTGTTAATGTAAACTACTCCCTT | 57.936 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
274 | 283 | 8.434392 | TCACTTTGTTAATGTAAACTACTCCCT | 58.566 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
275 | 284 | 8.611654 | TCACTTTGTTAATGTAAACTACTCCC | 57.388 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
276 | 285 | 9.485206 | TCTCACTTTGTTAATGTAAACTACTCC | 57.515 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
278 | 287 | 8.975439 | CGTCTCACTTTGTTAATGTAAACTACT | 58.025 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
279 | 288 | 8.971321 | TCGTCTCACTTTGTTAATGTAAACTAC | 58.029 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
280 | 289 | 9.188588 | CTCGTCTCACTTTGTTAATGTAAACTA | 57.811 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
281 | 290 | 7.170998 | CCTCGTCTCACTTTGTTAATGTAAACT | 59.829 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
282 | 291 | 7.042254 | ACCTCGTCTCACTTTGTTAATGTAAAC | 60.042 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
283 | 292 | 6.987992 | ACCTCGTCTCACTTTGTTAATGTAAA | 59.012 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
284 | 293 | 6.518493 | ACCTCGTCTCACTTTGTTAATGTAA | 58.482 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
289 | 298 | 5.533903 | AGTCTACCTCGTCTCACTTTGTTAA | 59.466 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
291 | 300 | 3.890147 | AGTCTACCTCGTCTCACTTTGTT | 59.110 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
306 | 315 | 1.093159 | ATCGACACGGTCAGTCTACC | 58.907 | 55.000 | 0.00 | 0.00 | 33.89 | 3.18 |
310 | 319 | 0.039437 | ACACATCGACACGGTCAGTC | 60.039 | 55.000 | 0.00 | 0.00 | 32.09 | 3.51 |
351 | 368 | 4.373527 | TGACACGGTAATTATCAATCGGG | 58.626 | 43.478 | 0.00 | 0.00 | 0.00 | 5.14 |
359 | 376 | 5.287226 | GTCGGATCTTGACACGGTAATTAT | 58.713 | 41.667 | 12.01 | 0.00 | 36.37 | 1.28 |
455 | 491 | 9.187996 | TGTGATAAGCAATTCAATCTAATCCAA | 57.812 | 29.630 | 0.00 | 0.00 | 0.00 | 3.53 |
456 | 492 | 8.750515 | TGTGATAAGCAATTCAATCTAATCCA | 57.249 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
462 | 498 | 9.346005 | TGACATATGTGATAAGCAATTCAATCT | 57.654 | 29.630 | 14.43 | 0.00 | 0.00 | 2.40 |
463 | 499 | 9.390795 | GTGACATATGTGATAAGCAATTCAATC | 57.609 | 33.333 | 14.43 | 0.00 | 0.00 | 2.67 |
464 | 500 | 8.071967 | CGTGACATATGTGATAAGCAATTCAAT | 58.928 | 33.333 | 14.43 | 0.00 | 0.00 | 2.57 |
465 | 501 | 7.065683 | ACGTGACATATGTGATAAGCAATTCAA | 59.934 | 33.333 | 14.43 | 0.00 | 0.00 | 2.69 |
466 | 502 | 6.538381 | ACGTGACATATGTGATAAGCAATTCA | 59.462 | 34.615 | 14.43 | 0.00 | 0.00 | 2.57 |
467 | 503 | 6.948353 | ACGTGACATATGTGATAAGCAATTC | 58.052 | 36.000 | 14.43 | 0.00 | 0.00 | 2.17 |
468 | 504 | 6.925610 | ACGTGACATATGTGATAAGCAATT | 57.074 | 33.333 | 14.43 | 0.00 | 0.00 | 2.32 |
469 | 505 | 6.316140 | ACAACGTGACATATGTGATAAGCAAT | 59.684 | 34.615 | 14.43 | 0.00 | 0.00 | 3.56 |
470 | 506 | 5.641636 | ACAACGTGACATATGTGATAAGCAA | 59.358 | 36.000 | 14.43 | 0.00 | 0.00 | 3.91 |
471 | 507 | 5.175127 | ACAACGTGACATATGTGATAAGCA | 58.825 | 37.500 | 14.43 | 0.37 | 0.00 | 3.91 |
472 | 508 | 5.718649 | ACAACGTGACATATGTGATAAGC | 57.281 | 39.130 | 14.43 | 0.00 | 0.00 | 3.09 |
473 | 509 | 7.222805 | AGCTTACAACGTGACATATGTGATAAG | 59.777 | 37.037 | 14.43 | 10.18 | 33.63 | 1.73 |
474 | 510 | 7.039270 | AGCTTACAACGTGACATATGTGATAA | 58.961 | 34.615 | 14.43 | 0.00 | 0.00 | 1.75 |
475 | 511 | 6.569780 | AGCTTACAACGTGACATATGTGATA | 58.430 | 36.000 | 14.43 | 0.00 | 0.00 | 2.15 |
476 | 512 | 5.419542 | AGCTTACAACGTGACATATGTGAT | 58.580 | 37.500 | 14.43 | 0.00 | 0.00 | 3.06 |
477 | 513 | 4.816392 | AGCTTACAACGTGACATATGTGA | 58.184 | 39.130 | 14.43 | 0.68 | 0.00 | 3.58 |
478 | 514 | 6.641176 | TTAGCTTACAACGTGACATATGTG | 57.359 | 37.500 | 14.43 | 1.19 | 0.00 | 3.21 |
479 | 515 | 7.039270 | TGATTAGCTTACAACGTGACATATGT | 58.961 | 34.615 | 8.43 | 8.43 | 0.00 | 2.29 |
480 | 516 | 7.222805 | ACTGATTAGCTTACAACGTGACATATG | 59.777 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
481 | 517 | 7.265673 | ACTGATTAGCTTACAACGTGACATAT | 58.734 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
482 | 518 | 6.627243 | ACTGATTAGCTTACAACGTGACATA | 58.373 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
483 | 519 | 5.479306 | ACTGATTAGCTTACAACGTGACAT | 58.521 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
484 | 520 | 4.878439 | ACTGATTAGCTTACAACGTGACA | 58.122 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
485 | 521 | 5.840940 | AACTGATTAGCTTACAACGTGAC | 57.159 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
486 | 522 | 6.655062 | CAAAACTGATTAGCTTACAACGTGA | 58.345 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
487 | 523 | 5.339611 | GCAAAACTGATTAGCTTACAACGTG | 59.660 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
488 | 524 | 5.238650 | AGCAAAACTGATTAGCTTACAACGT | 59.761 | 36.000 | 0.00 | 0.00 | 29.98 | 3.99 |
489 | 525 | 5.689819 | AGCAAAACTGATTAGCTTACAACG | 58.310 | 37.500 | 0.00 | 0.00 | 29.98 | 4.10 |
490 | 526 | 8.290325 | ACTTAGCAAAACTGATTAGCTTACAAC | 58.710 | 33.333 | 0.00 | 0.00 | 36.80 | 3.32 |
491 | 527 | 8.391075 | ACTTAGCAAAACTGATTAGCTTACAA | 57.609 | 30.769 | 0.00 | 0.00 | 36.80 | 2.41 |
492 | 528 | 7.878127 | AGACTTAGCAAAACTGATTAGCTTACA | 59.122 | 33.333 | 0.00 | 0.00 | 36.80 | 2.41 |
493 | 529 | 8.257830 | AGACTTAGCAAAACTGATTAGCTTAC | 57.742 | 34.615 | 0.00 | 0.00 | 36.80 | 2.34 |
494 | 530 | 8.848474 | AAGACTTAGCAAAACTGATTAGCTTA | 57.152 | 30.769 | 0.00 | 0.00 | 36.80 | 3.09 |
495 | 531 | 7.751768 | AAGACTTAGCAAAACTGATTAGCTT | 57.248 | 32.000 | 0.00 | 0.00 | 36.80 | 3.74 |
496 | 532 | 8.848474 | TTAAGACTTAGCAAAACTGATTAGCT | 57.152 | 30.769 | 0.00 | 0.00 | 39.22 | 3.32 |
497 | 533 | 9.709600 | GATTAAGACTTAGCAAAACTGATTAGC | 57.290 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
498 | 534 | 9.907576 | CGATTAAGACTTAGCAAAACTGATTAG | 57.092 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
499 | 535 | 9.647797 | TCGATTAAGACTTAGCAAAACTGATTA | 57.352 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
500 | 536 | 8.443937 | GTCGATTAAGACTTAGCAAAACTGATT | 58.556 | 33.333 | 0.00 | 0.00 | 38.09 | 2.57 |
501 | 537 | 7.602644 | TGTCGATTAAGACTTAGCAAAACTGAT | 59.397 | 33.333 | 0.00 | 0.00 | 41.47 | 2.90 |
502 | 538 | 6.926826 | TGTCGATTAAGACTTAGCAAAACTGA | 59.073 | 34.615 | 0.00 | 0.00 | 41.47 | 3.41 |
503 | 539 | 7.117241 | TGTCGATTAAGACTTAGCAAAACTG | 57.883 | 36.000 | 0.00 | 0.00 | 41.47 | 3.16 |
504 | 540 | 7.907214 | ATGTCGATTAAGACTTAGCAAAACT | 57.093 | 32.000 | 0.00 | 0.00 | 41.47 | 2.66 |
507 | 543 | 9.431887 | AGTTTATGTCGATTAAGACTTAGCAAA | 57.568 | 29.630 | 0.00 | 0.00 | 41.47 | 3.68 |
508 | 544 | 8.997621 | AGTTTATGTCGATTAAGACTTAGCAA | 57.002 | 30.769 | 0.00 | 0.00 | 41.47 | 3.91 |
509 | 545 | 8.997621 | AAGTTTATGTCGATTAAGACTTAGCA | 57.002 | 30.769 | 0.00 | 0.00 | 41.47 | 3.49 |
526 | 562 | 9.737427 | ATCGACTGAGACATAACTAAGTTTATG | 57.263 | 33.333 | 0.00 | 0.00 | 42.76 | 1.90 |
527 | 563 | 9.737427 | CATCGACTGAGACATAACTAAGTTTAT | 57.263 | 33.333 | 0.00 | 0.00 | 32.29 | 1.40 |
528 | 564 | 8.737175 | ACATCGACTGAGACATAACTAAGTTTA | 58.263 | 33.333 | 0.00 | 0.00 | 32.29 | 2.01 |
529 | 565 | 7.603651 | ACATCGACTGAGACATAACTAAGTTT | 58.396 | 34.615 | 0.00 | 0.00 | 32.29 | 2.66 |
530 | 566 | 7.159322 | ACATCGACTGAGACATAACTAAGTT | 57.841 | 36.000 | 0.00 | 0.00 | 32.29 | 2.66 |
531 | 567 | 6.761099 | ACATCGACTGAGACATAACTAAGT | 57.239 | 37.500 | 0.00 | 0.00 | 34.59 | 2.24 |
535 | 571 | 9.900710 | GAATATAACATCGACTGAGACATAACT | 57.099 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
536 | 572 | 8.841822 | CGAATATAACATCGACTGAGACATAAC | 58.158 | 37.037 | 0.00 | 0.00 | 41.43 | 1.89 |
537 | 573 | 8.565416 | ACGAATATAACATCGACTGAGACATAA | 58.435 | 33.333 | 11.44 | 0.00 | 41.43 | 1.90 |
538 | 574 | 8.095937 | ACGAATATAACATCGACTGAGACATA | 57.904 | 34.615 | 11.44 | 0.00 | 41.43 | 2.29 |
539 | 575 | 6.971602 | ACGAATATAACATCGACTGAGACAT | 58.028 | 36.000 | 11.44 | 0.00 | 41.43 | 3.06 |
540 | 576 | 6.373186 | ACGAATATAACATCGACTGAGACA | 57.627 | 37.500 | 11.44 | 0.00 | 41.43 | 3.41 |
541 | 577 | 8.778141 | TTTACGAATATAACATCGACTGAGAC | 57.222 | 34.615 | 11.44 | 0.00 | 41.43 | 3.36 |
542 | 578 | 9.961265 | ATTTTACGAATATAACATCGACTGAGA | 57.039 | 29.630 | 11.44 | 0.00 | 41.43 | 3.27 |
544 | 580 | 9.738832 | TGATTTTACGAATATAACATCGACTGA | 57.261 | 29.630 | 11.44 | 0.00 | 41.43 | 3.41 |
558 | 594 | 8.712363 | CGGATCTTGATGTATGATTTTACGAAT | 58.288 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
559 | 595 | 7.709182 | ACGGATCTTGATGTATGATTTTACGAA | 59.291 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
560 | 596 | 7.169140 | CACGGATCTTGATGTATGATTTTACGA | 59.831 | 37.037 | 0.00 | 0.00 | 0.00 | 3.43 |
561 | 597 | 7.042725 | ACACGGATCTTGATGTATGATTTTACG | 60.043 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
562 | 598 | 8.142994 | ACACGGATCTTGATGTATGATTTTAC | 57.857 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
563 | 599 | 9.825109 | TTACACGGATCTTGATGTATGATTTTA | 57.175 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
564 | 600 | 8.731275 | TTACACGGATCTTGATGTATGATTTT | 57.269 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
565 | 601 | 8.731275 | TTTACACGGATCTTGATGTATGATTT | 57.269 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
566 | 602 | 8.731275 | TTTTACACGGATCTTGATGTATGATT | 57.269 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
567 | 603 | 8.908786 | ATTTTACACGGATCTTGATGTATGAT | 57.091 | 30.769 | 0.00 | 0.00 | 0.00 | 2.45 |
568 | 604 | 8.731275 | AATTTTACACGGATCTTGATGTATGA | 57.269 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
569 | 605 | 9.787532 | AAAATTTTACACGGATCTTGATGTATG | 57.212 | 29.630 | 0.37 | 0.00 | 0.00 | 2.39 |
571 | 607 | 9.226606 | AGAAAATTTTACACGGATCTTGATGTA | 57.773 | 29.630 | 2.75 | 0.00 | 0.00 | 2.29 |
572 | 608 | 8.110860 | AGAAAATTTTACACGGATCTTGATGT | 57.889 | 30.769 | 2.75 | 0.00 | 0.00 | 3.06 |
573 | 609 | 8.970691 | AAGAAAATTTTACACGGATCTTGATG | 57.029 | 30.769 | 2.75 | 0.00 | 0.00 | 3.07 |
575 | 611 | 9.887406 | GTAAAGAAAATTTTACACGGATCTTGA | 57.113 | 29.630 | 2.75 | 0.00 | 41.16 | 3.02 |
576 | 612 | 9.672086 | TGTAAAGAAAATTTTACACGGATCTTG | 57.328 | 29.630 | 2.75 | 0.00 | 44.35 | 3.02 |
637 | 673 | 8.600625 | CGGTCGACTGAGATTTAATCAATTTTA | 58.399 | 33.333 | 20.01 | 0.00 | 0.00 | 1.52 |
638 | 674 | 7.333423 | TCGGTCGACTGAGATTTAATCAATTTT | 59.667 | 33.333 | 23.11 | 0.00 | 0.00 | 1.82 |
639 | 675 | 6.816640 | TCGGTCGACTGAGATTTAATCAATTT | 59.183 | 34.615 | 23.11 | 0.00 | 0.00 | 1.82 |
640 | 676 | 6.338146 | TCGGTCGACTGAGATTTAATCAATT | 58.662 | 36.000 | 23.11 | 0.00 | 0.00 | 2.32 |
641 | 677 | 5.902681 | TCGGTCGACTGAGATTTAATCAAT | 58.097 | 37.500 | 23.11 | 0.00 | 0.00 | 2.57 |
642 | 678 | 5.319140 | TCGGTCGACTGAGATTTAATCAA | 57.681 | 39.130 | 23.11 | 0.00 | 0.00 | 2.57 |
643 | 679 | 4.976224 | TCGGTCGACTGAGATTTAATCA | 57.024 | 40.909 | 23.11 | 0.00 | 0.00 | 2.57 |
653 | 689 | 1.376942 | GGAGGTCTCGGTCGACTGA | 60.377 | 63.158 | 25.02 | 25.02 | 34.38 | 3.41 |
654 | 690 | 2.408241 | GGGAGGTCTCGGTCGACTG | 61.408 | 68.421 | 18.66 | 18.66 | 34.38 | 3.51 |
655 | 691 | 2.045143 | GGGAGGTCTCGGTCGACT | 60.045 | 66.667 | 16.46 | 0.00 | 34.38 | 4.18 |
656 | 692 | 3.139469 | GGGGAGGTCTCGGTCGAC | 61.139 | 72.222 | 7.13 | 7.13 | 0.00 | 4.20 |
657 | 693 | 4.437587 | GGGGGAGGTCTCGGTCGA | 62.438 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
658 | 694 | 4.753662 | TGGGGGAGGTCTCGGTCG | 62.754 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
659 | 695 | 3.075641 | GTGGGGGAGGTCTCGGTC | 61.076 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
660 | 696 | 4.716977 | GGTGGGGGAGGTCTCGGT | 62.717 | 72.222 | 0.00 | 0.00 | 0.00 | 4.69 |
662 | 698 | 4.715130 | TGGGTGGGGGAGGTCTCG | 62.715 | 72.222 | 0.00 | 0.00 | 0.00 | 4.04 |
663 | 699 | 0.327191 | TATTGGGTGGGGGAGGTCTC | 60.327 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
664 | 700 | 0.350541 | ATATTGGGTGGGGGAGGTCT | 59.649 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
665 | 701 | 0.771755 | GATATTGGGTGGGGGAGGTC | 59.228 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
666 | 702 | 0.047176 | TGATATTGGGTGGGGGAGGT | 59.953 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
667 | 703 | 0.478507 | GTGATATTGGGTGGGGGAGG | 59.521 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
668 | 704 | 0.478507 | GGTGATATTGGGTGGGGGAG | 59.521 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
669 | 705 | 0.253868 | TGGTGATATTGGGTGGGGGA | 60.254 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
670 | 706 | 0.633921 | TTGGTGATATTGGGTGGGGG | 59.366 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
671 | 707 | 1.006519 | TGTTGGTGATATTGGGTGGGG | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 4.96 |
672 | 708 | 2.523325 | TGTTGGTGATATTGGGTGGG | 57.477 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
673 | 709 | 3.364549 | ACATGTTGGTGATATTGGGTGG | 58.635 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
674 | 710 | 5.417266 | TGTAACATGTTGGTGATATTGGGTG | 59.583 | 40.000 | 21.42 | 0.00 | 0.00 | 4.61 |
675 | 711 | 5.575157 | TGTAACATGTTGGTGATATTGGGT | 58.425 | 37.500 | 21.42 | 0.00 | 0.00 | 4.51 |
676 | 712 | 6.713762 | ATGTAACATGTTGGTGATATTGGG | 57.286 | 37.500 | 21.42 | 0.00 | 0.00 | 4.12 |
692 | 728 | 4.519213 | GGTGGGCTTGTATGTATGTAACA | 58.481 | 43.478 | 0.00 | 0.00 | 43.86 | 2.41 |
721 | 759 | 0.319986 | TGTTGTAGCCGATCGTTGCA | 60.320 | 50.000 | 15.09 | 8.83 | 0.00 | 4.08 |
746 | 786 | 0.674581 | GAACGTTAACGGGAAGGGGG | 60.675 | 60.000 | 29.81 | 1.53 | 44.95 | 5.40 |
747 | 787 | 0.674581 | GGAACGTTAACGGGAAGGGG | 60.675 | 60.000 | 29.81 | 2.25 | 44.95 | 4.79 |
748 | 788 | 0.674581 | GGGAACGTTAACGGGAAGGG | 60.675 | 60.000 | 29.81 | 2.99 | 44.95 | 3.95 |
749 | 789 | 2.845019 | GGGAACGTTAACGGGAAGG | 58.155 | 57.895 | 29.81 | 3.73 | 44.95 | 3.46 |
774 | 814 | 2.352030 | CCGGAGCGCGGTTATAAATAGA | 60.352 | 50.000 | 14.00 | 0.00 | 0.00 | 1.98 |
842 | 882 | 4.480115 | TGGAGGAAGAAGGCGATCTAATA | 58.520 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
845 | 885 | 2.454336 | TGGAGGAAGAAGGCGATCTA | 57.546 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
846 | 886 | 1.691434 | GATGGAGGAAGAAGGCGATCT | 59.309 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
867 | 907 | 1.134788 | AGATACCGGCAGTGCACTTAC | 60.135 | 52.381 | 18.94 | 12.55 | 0.00 | 2.34 |
899 | 939 | 1.728971 | GTTGATGTCTTGAGTGCTCGG | 59.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
950 | 990 | 9.872721 | GTAGCTTACTCTTTCTTTACCAAGTAT | 57.127 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
951 | 991 | 8.309656 | GGTAGCTTACTCTTTCTTTACCAAGTA | 58.690 | 37.037 | 0.00 | 0.00 | 31.78 | 2.24 |
952 | 992 | 7.016366 | AGGTAGCTTACTCTTTCTTTACCAAGT | 59.984 | 37.037 | 0.00 | 0.00 | 33.44 | 3.16 |
953 | 993 | 7.387643 | AGGTAGCTTACTCTTTCTTTACCAAG | 58.612 | 38.462 | 0.00 | 0.00 | 33.44 | 3.61 |
954 | 994 | 7.312415 | AGGTAGCTTACTCTTTCTTTACCAA | 57.688 | 36.000 | 0.00 | 0.00 | 33.44 | 3.67 |
955 | 995 | 6.930068 | AGGTAGCTTACTCTTTCTTTACCA | 57.070 | 37.500 | 0.00 | 0.00 | 33.44 | 3.25 |
956 | 996 | 8.504815 | CAAAAGGTAGCTTACTCTTTCTTTACC | 58.495 | 37.037 | 7.76 | 0.00 | 32.10 | 2.85 |
965 | 1005 | 4.760878 | GCTAGCAAAAGGTAGCTTACTCT | 58.239 | 43.478 | 10.63 | 7.52 | 42.05 | 3.24 |
1164 | 1206 | 4.193334 | CCGCGCTCGATGTCCTCA | 62.193 | 66.667 | 5.56 | 0.00 | 38.10 | 3.86 |
1203 | 1245 | 0.318275 | GACCAGCGAAGAGGCGATAG | 60.318 | 60.000 | 0.00 | 0.00 | 38.18 | 2.08 |
1206 | 1248 | 2.989253 | TGACCAGCGAAGAGGCGA | 60.989 | 61.111 | 0.00 | 0.00 | 38.18 | 5.54 |
1588 | 1638 | 1.550065 | CGATGCTCAAACTCGACGAT | 58.450 | 50.000 | 0.00 | 0.00 | 34.41 | 3.73 |
1605 | 1658 | 0.882042 | GATAGTACTCGACGCCCCGA | 60.882 | 60.000 | 0.00 | 0.00 | 37.03 | 5.14 |
2058 | 2126 | 4.332543 | TTCTCCAGCCCCTCCCGT | 62.333 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
2324 | 2392 | 3.792459 | GCTTGCTGCTTGATGATTAGCTG | 60.792 | 47.826 | 0.00 | 0.00 | 38.22 | 4.24 |
2326 | 2394 | 2.543238 | GGCTTGCTGCTTGATGATTAGC | 60.543 | 50.000 | 0.00 | 0.00 | 42.39 | 3.09 |
2332 | 2400 | 1.153823 | GCTGGCTTGCTGCTTGATG | 60.154 | 57.895 | 0.00 | 0.00 | 42.39 | 3.07 |
2334 | 2402 | 3.359523 | CGCTGGCTTGCTGCTTGA | 61.360 | 61.111 | 0.00 | 0.00 | 42.39 | 3.02 |
2335 | 2403 | 3.667282 | ACGCTGGCTTGCTGCTTG | 61.667 | 61.111 | 0.00 | 0.00 | 42.39 | 4.01 |
2336 | 2404 | 3.667282 | CACGCTGGCTTGCTGCTT | 61.667 | 61.111 | 0.00 | 0.00 | 42.39 | 3.91 |
2367 | 2435 | 9.803130 | CGCTGATTTAATCACTCAATAATACAG | 57.197 | 33.333 | 3.20 | 0.00 | 35.06 | 2.74 |
2368 | 2436 | 9.541143 | TCGCTGATTTAATCACTCAATAATACA | 57.459 | 29.630 | 3.20 | 0.00 | 35.06 | 2.29 |
2467 | 2535 | 4.201695 | CGTGATACGATAGATACACGGAGG | 60.202 | 50.000 | 0.00 | 0.00 | 46.05 | 4.30 |
2617 | 2688 | 8.597662 | ATCAATCACAAATGGAAAAGAAACAG | 57.402 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
2664 | 2736 | 2.802816 | GGAAAATCCGTCCATGATCGAG | 59.197 | 50.000 | 10.20 | 2.74 | 35.05 | 4.04 |
2679 | 2751 | 6.017357 | GGACAGTACAGAAAAGAACGGAAAAT | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
2725 | 2808 | 2.040178 | ACCATGGCTAGGCTACAGTAC | 58.960 | 52.381 | 18.18 | 0.00 | 0.00 | 2.73 |
2745 | 2828 | 7.100409 | TGGACATCTAACACGACATTTGATTA | 58.900 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
2754 | 2837 | 5.856126 | TCATTTTGGACATCTAACACGAC | 57.144 | 39.130 | 0.00 | 0.00 | 0.00 | 4.34 |
2760 | 2843 | 5.989477 | AGGTCGATCATTTTGGACATCTAA | 58.011 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
2862 | 2945 | 1.065701 | CGTCCCGAGAATTCAGACGAT | 59.934 | 52.381 | 24.11 | 0.00 | 45.44 | 3.73 |
2876 | 2959 | 3.393800 | AGAAAATGCTATCATCGTCCCG | 58.606 | 45.455 | 0.00 | 0.00 | 31.27 | 5.14 |
3012 | 3099 | 1.542915 | TGCGCGTACTTTCTCCTACTT | 59.457 | 47.619 | 8.43 | 0.00 | 0.00 | 2.24 |
3046 | 3133 | 6.642131 | ACACGATCAATTTCCACAAGATTTTG | 59.358 | 34.615 | 0.00 | 0.00 | 40.24 | 2.44 |
3053 | 3146 | 4.339530 | TCCAAACACGATCAATTTCCACAA | 59.660 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
3089 | 3182 | 6.847956 | CATGCAATGTTTTTCCTTTGAGAA | 57.152 | 33.333 | 0.00 | 0.00 | 40.20 | 2.87 |
3111 | 3205 | 4.066646 | TGTCTACAAAACAGCACTAGCA | 57.933 | 40.909 | 0.00 | 0.00 | 45.49 | 3.49 |
3113 | 3207 | 5.106948 | CCACATGTCTACAAAACAGCACTAG | 60.107 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3190 | 3298 | 4.494350 | AACAACATCACTTCTCATGCAC | 57.506 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
3226 | 3334 | 9.119418 | AGGTTTGAAAAACCAAAATAAGAATGG | 57.881 | 29.630 | 20.82 | 0.00 | 42.69 | 3.16 |
3231 | 3339 | 7.984617 | TCAGGAGGTTTGAAAAACCAAAATAAG | 59.015 | 33.333 | 20.82 | 6.90 | 42.69 | 1.73 |
3235 | 3343 | 5.746990 | TCAGGAGGTTTGAAAAACCAAAA | 57.253 | 34.783 | 20.82 | 2.64 | 42.69 | 2.44 |
3267 | 3375 | 7.358352 | CGAACATGCAAATTTTCTAGGTCAAAC | 60.358 | 37.037 | 0.00 | 0.00 | 0.00 | 2.93 |
3276 | 3385 | 7.763172 | TGTTTAACGAACATGCAAATTTTCT | 57.237 | 28.000 | 0.00 | 0.00 | 43.13 | 2.52 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.