Multiple sequence alignment - TraesCS5A01G338700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G338700 chr5A 100.000 3320 0 0 1 3320 546359337 546362656 0.000000e+00 6131.0
1 TraesCS5A01G338700 chr5A 91.835 1335 103 1 993 2321 546344828 546346162 0.000000e+00 1857.0
2 TraesCS5A01G338700 chr5A 79.289 1323 242 23 1001 2316 512799376 512800673 0.000000e+00 896.0
3 TraesCS5A01G338700 chr5A 76.767 1330 266 29 1001 2316 546154217 546155517 0.000000e+00 704.0
4 TraesCS5A01G338700 chr5A 84.000 650 94 7 1672 2316 545985276 545985920 1.690000e-172 616.0
5 TraesCS5A01G338700 chr5A 95.349 129 6 0 154 282 290115538 290115410 4.340000e-49 206.0
6 TraesCS5A01G338700 chr5A 93.893 131 7 1 311 440 546354659 546354789 2.610000e-46 196.0
7 TraesCS5A01G338700 chr5A 85.093 161 16 3 6 159 546354465 546354624 1.230000e-34 158.0
8 TraesCS5A01G338700 chr5A 84.946 93 13 1 2888 2980 546346584 546346675 3.530000e-15 93.5
9 TraesCS5A01G338700 chr5B 88.507 2680 174 49 678 3320 520419078 520421660 0.000000e+00 3120.0
10 TraesCS5A01G338700 chr5B 91.382 1346 110 3 993 2332 520369585 520370930 0.000000e+00 1838.0
11 TraesCS5A01G338700 chr5B 78.695 1333 241 31 1001 2316 488561076 488562382 0.000000e+00 848.0
12 TraesCS5A01G338700 chr5B 96.324 136 4 1 312 446 520418947 520419082 4.310000e-54 222.0
13 TraesCS5A01G338700 chr5D 90.207 1787 124 21 678 2460 430985225 430986964 0.000000e+00 2283.0
14 TraesCS5A01G338700 chr5D 92.125 1346 100 1 993 2332 430968646 430969991 0.000000e+00 1893.0
15 TraesCS5A01G338700 chr5D 90.499 821 53 15 2520 3320 430991471 430992286 0.000000e+00 1061.0
16 TraesCS5A01G338700 chr5D 79.033 1345 234 36 1001 2326 407517493 407518808 0.000000e+00 878.0
17 TraesCS5A01G338700 chr5D 84.251 654 93 7 1668 2316 430512300 430512948 2.170000e-176 628.0
18 TraesCS5A01G338700 chr5D 83.817 655 92 11 1668 2315 430446197 430446844 7.870000e-171 610.0
19 TraesCS5A01G338700 chr5D 88.125 160 11 3 6 157 430984877 430985036 2.030000e-42 183.0
20 TraesCS5A01G338700 chr5D 96.667 90 2 1 358 446 430985140 430985229 7.420000e-32 148.0
21 TraesCS5A01G338700 chr5D 97.917 48 1 0 312 359 430985076 430985123 2.120000e-12 84.2
22 TraesCS5A01G338700 chr3B 82.520 738 103 14 1248 1984 323317374 323316662 2.810000e-175 625.0
23 TraesCS5A01G338700 chr3B 94.030 134 7 1 154 287 630594209 630594077 5.620000e-48 202.0
24 TraesCS5A01G338700 chr3B 92.086 139 11 0 153 291 741865979 741865841 2.610000e-46 196.0
25 TraesCS5A01G338700 chr1B 80.774 749 107 17 1248 1983 256824311 256823587 4.840000e-153 551.0
26 TraesCS5A01G338700 chr6A 94.656 131 7 0 152 282 542709344 542709474 1.560000e-48 204.0
27 TraesCS5A01G338700 chr6B 94.615 130 7 0 153 282 30348243 30348372 5.620000e-48 202.0
28 TraesCS5A01G338700 chr6B 92.647 136 10 0 150 285 710104002 710104137 2.610000e-46 196.0
29 TraesCS5A01G338700 chr2A 92.806 139 8 2 155 293 74829187 74829051 2.020000e-47 200.0
30 TraesCS5A01G338700 chr1D 94.574 129 7 0 156 284 43298886 43298758 2.020000e-47 200.0
31 TraesCS5A01G338700 chr4D 90.000 150 11 3 154 299 117644077 117643928 1.220000e-44 191.0
32 TraesCS5A01G338700 chr4B 83.133 83 14 0 505 587 659479904 659479822 3.550000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G338700 chr5A 546359337 546362656 3319 False 6131.00 6131 100.0000 1 3320 1 chr5A.!!$F4 3319
1 TraesCS5A01G338700 chr5A 546344828 546346675 1847 False 975.25 1857 88.3905 993 2980 2 chr5A.!!$F5 1987
2 TraesCS5A01G338700 chr5A 512799376 512800673 1297 False 896.00 896 79.2890 1001 2316 1 chr5A.!!$F1 1315
3 TraesCS5A01G338700 chr5A 546154217 546155517 1300 False 704.00 704 76.7670 1001 2316 1 chr5A.!!$F3 1315
4 TraesCS5A01G338700 chr5A 545985276 545985920 644 False 616.00 616 84.0000 1672 2316 1 chr5A.!!$F2 644
5 TraesCS5A01G338700 chr5B 520369585 520370930 1345 False 1838.00 1838 91.3820 993 2332 1 chr5B.!!$F2 1339
6 TraesCS5A01G338700 chr5B 520418947 520421660 2713 False 1671.00 3120 92.4155 312 3320 2 chr5B.!!$F3 3008
7 TraesCS5A01G338700 chr5B 488561076 488562382 1306 False 848.00 848 78.6950 1001 2316 1 chr5B.!!$F1 1315
8 TraesCS5A01G338700 chr5D 430968646 430969991 1345 False 1893.00 1893 92.1250 993 2332 1 chr5D.!!$F4 1339
9 TraesCS5A01G338700 chr5D 430991471 430992286 815 False 1061.00 1061 90.4990 2520 3320 1 chr5D.!!$F5 800
10 TraesCS5A01G338700 chr5D 407517493 407518808 1315 False 878.00 878 79.0330 1001 2326 1 chr5D.!!$F1 1325
11 TraesCS5A01G338700 chr5D 430984877 430986964 2087 False 674.55 2283 93.2290 6 2460 4 chr5D.!!$F6 2454
12 TraesCS5A01G338700 chr5D 430512300 430512948 648 False 628.00 628 84.2510 1668 2316 1 chr5D.!!$F3 648
13 TraesCS5A01G338700 chr5D 430446197 430446844 647 False 610.00 610 83.8170 1668 2315 1 chr5D.!!$F2 647
14 TraesCS5A01G338700 chr3B 323316662 323317374 712 True 625.00 625 82.5200 1248 1984 1 chr3B.!!$R1 736
15 TraesCS5A01G338700 chr1B 256823587 256824311 724 True 551.00 551 80.7740 1248 1983 1 chr1B.!!$R1 735


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 705 0.25361 ATCTCAGTCGACCGAGACCT 59.746 55.0 28.97 14.9 40.92 3.85 F
867 907 0.39086 ATCGCCTTCTTCCTCCATCG 59.609 55.0 0.00 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 1658 0.882042 GATAGTACTCGACGCCCCGA 60.882 60.000 0.00 0.0 37.03 5.14 R
2862 2945 1.065701 CGTCCCGAGAATTCAGACGAT 59.934 52.381 24.11 0.0 45.44 3.73 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.771165 GGAGTAGGACTCTCGGATCTAAATT 59.229 44.000 6.58 0.00 44.46 1.82
31 32 6.739331 AGGACTCTCGGATCTAAATTTCAT 57.261 37.500 0.00 0.00 0.00 2.57
41 42 8.141909 TCGGATCTAAATTTCATCGTGTAGATT 58.858 33.333 0.00 0.00 37.52 2.40
81 83 5.590530 TTTTGTGCGGGAATATAGCATTT 57.409 34.783 0.00 0.00 43.17 2.32
114 123 2.038557 AGTAAGTTGTCCCGTTCTGCAT 59.961 45.455 0.00 0.00 0.00 3.96
117 126 3.350219 AGTTGTCCCGTTCTGCATAAT 57.650 42.857 0.00 0.00 0.00 1.28
119 128 4.442706 AGTTGTCCCGTTCTGCATAATAG 58.557 43.478 0.00 0.00 0.00 1.73
124 133 3.069586 TCCCGTTCTGCATAATAGGTCAG 59.930 47.826 0.00 0.00 0.00 3.51
157 166 5.173312 CAGCTGTACACTGCACGTAATATAC 59.827 44.000 5.25 0.00 42.33 1.47
159 168 5.398711 GCTGTACACTGCACGTAATATACTC 59.601 44.000 6.38 0.00 40.06 2.59
160 169 5.824429 TGTACACTGCACGTAATATACTCC 58.176 41.667 0.00 0.00 0.00 3.85
161 170 4.317671 ACACTGCACGTAATATACTCCC 57.682 45.455 0.00 0.00 0.00 4.30
162 171 3.958798 ACACTGCACGTAATATACTCCCT 59.041 43.478 0.00 0.00 0.00 4.20
163 172 4.037684 ACACTGCACGTAATATACTCCCTC 59.962 45.833 0.00 0.00 0.00 4.30
164 173 3.573110 ACTGCACGTAATATACTCCCTCC 59.427 47.826 0.00 0.00 0.00 4.30
165 174 2.555325 TGCACGTAATATACTCCCTCCG 59.445 50.000 0.00 0.00 0.00 4.63
166 175 2.555757 GCACGTAATATACTCCCTCCGT 59.444 50.000 0.00 0.00 0.00 4.69
167 176 3.365767 GCACGTAATATACTCCCTCCGTC 60.366 52.174 0.00 0.00 0.00 4.79
168 177 4.070716 CACGTAATATACTCCCTCCGTCT 58.929 47.826 0.00 0.00 0.00 4.18
169 178 4.153835 CACGTAATATACTCCCTCCGTCTC 59.846 50.000 0.00 0.00 0.00 3.36
170 179 4.202398 ACGTAATATACTCCCTCCGTCTCA 60.202 45.833 0.00 0.00 0.00 3.27
171 180 4.758674 CGTAATATACTCCCTCCGTCTCAA 59.241 45.833 0.00 0.00 0.00 3.02
172 181 5.240183 CGTAATATACTCCCTCCGTCTCAAA 59.760 44.000 0.00 0.00 0.00 2.69
173 182 6.238842 CGTAATATACTCCCTCCGTCTCAAAA 60.239 42.308 0.00 0.00 0.00 2.44
174 183 6.749036 AATATACTCCCTCCGTCTCAAAAT 57.251 37.500 0.00 0.00 0.00 1.82
175 184 6.749036 ATATACTCCCTCCGTCTCAAAATT 57.251 37.500 0.00 0.00 0.00 1.82
176 185 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
177 186 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
178 187 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
179 188 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
180 189 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
181 190 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
182 191 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
183 192 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
184 193 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
185 194 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
186 195 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
187 196 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
188 197 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
189 198 8.507249 CCGTCTCAAAATTCTTGTCTTAGATTT 58.493 33.333 0.00 0.00 0.00 2.17
190 199 9.322776 CGTCTCAAAATTCTTGTCTTAGATTTG 57.677 33.333 0.00 0.00 30.65 2.32
199 208 9.646427 ATTCTTGTCTTAGATTTGTCTAGACAC 57.354 33.333 25.13 13.90 41.67 3.67
200 209 8.178313 TCTTGTCTTAGATTTGTCTAGACACA 57.822 34.615 25.13 19.36 41.67 3.72
201 210 8.300286 TCTTGTCTTAGATTTGTCTAGACACAG 58.700 37.037 25.13 13.33 41.67 3.66
202 211 7.761038 TGTCTTAGATTTGTCTAGACACAGA 57.239 36.000 25.13 14.17 41.67 3.41
203 212 8.354711 TGTCTTAGATTTGTCTAGACACAGAT 57.645 34.615 25.13 17.97 41.67 2.90
204 213 8.246871 TGTCTTAGATTTGTCTAGACACAGATG 58.753 37.037 25.13 11.91 41.67 2.90
205 214 8.247562 GTCTTAGATTTGTCTAGACACAGATGT 58.752 37.037 25.13 18.07 41.67 3.06
206 215 9.462606 TCTTAGATTTGTCTAGACACAGATGTA 57.537 33.333 25.13 17.19 41.67 2.29
209 218 8.532186 AGATTTGTCTAGACACAGATGTATCT 57.468 34.615 25.13 18.00 41.67 1.98
210 219 9.634021 AGATTTGTCTAGACACAGATGTATCTA 57.366 33.333 25.13 3.21 41.67 1.98
236 245 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
237 246 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
238 247 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
239 248 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
240 249 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
256 265 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
257 266 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
258 267 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
259 268 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
260 269 8.963725 TCCGTATCTAGACAAATCTAAGACAAA 58.036 33.333 0.00 0.00 36.98 2.83
261 270 9.582431 CCGTATCTAGACAAATCTAAGACAAAA 57.418 33.333 0.00 0.00 36.98 2.44
276 285 9.151471 TCTAAGACAAAAATTATGAGACGAAGG 57.849 33.333 0.00 0.00 0.00 3.46
277 286 6.743575 AGACAAAAATTATGAGACGAAGGG 57.256 37.500 0.00 0.00 0.00 3.95
278 287 6.472887 AGACAAAAATTATGAGACGAAGGGA 58.527 36.000 0.00 0.00 0.00 4.20
279 288 6.595716 AGACAAAAATTATGAGACGAAGGGAG 59.404 38.462 0.00 0.00 0.00 4.30
280 289 6.238648 ACAAAAATTATGAGACGAAGGGAGT 58.761 36.000 0.00 0.00 0.00 3.85
281 290 7.391620 ACAAAAATTATGAGACGAAGGGAGTA 58.608 34.615 0.00 0.00 0.00 2.59
282 291 7.549488 ACAAAAATTATGAGACGAAGGGAGTAG 59.451 37.037 0.00 0.00 0.00 2.57
283 292 6.793505 AAATTATGAGACGAAGGGAGTAGT 57.206 37.500 0.00 0.00 0.00 2.73
284 293 6.793505 AATTATGAGACGAAGGGAGTAGTT 57.206 37.500 0.00 0.00 0.00 2.24
289 298 5.014858 TGAGACGAAGGGAGTAGTTTACAT 58.985 41.667 0.00 0.00 0.00 2.29
291 300 6.660521 TGAGACGAAGGGAGTAGTTTACATTA 59.339 38.462 0.00 0.00 0.00 1.90
306 315 8.073355 AGTTTACATTAACAAAGTGAGACGAG 57.927 34.615 0.00 0.00 0.00 4.18
310 319 6.157211 ACATTAACAAAGTGAGACGAGGTAG 58.843 40.000 0.00 0.00 0.00 3.18
351 368 2.049433 CGGTGACCACGACACTCC 60.049 66.667 1.11 0.00 38.20 3.85
359 376 1.589630 CACGACACTCCCCGATTGA 59.410 57.895 0.00 0.00 0.00 2.57
440 476 2.102925 CCCCATGCCATGATTGGTTAAC 59.897 50.000 6.18 0.00 45.57 2.01
441 477 2.102925 CCCATGCCATGATTGGTTAACC 59.897 50.000 18.27 18.27 45.57 2.85
442 478 2.102925 CCATGCCATGATTGGTTAACCC 59.897 50.000 21.97 7.29 45.57 4.11
443 479 2.612285 TGCCATGATTGGTTAACCCA 57.388 45.000 21.97 11.81 45.57 4.51
481 517 8.750515 TGGATTAGATTGAATTGCTTATCACA 57.249 30.769 0.00 0.00 0.00 3.58
482 518 9.358406 TGGATTAGATTGAATTGCTTATCACAT 57.642 29.630 0.00 0.00 0.00 3.21
488 524 9.346005 AGATTGAATTGCTTATCACATATGTCA 57.654 29.630 5.07 0.00 0.00 3.58
489 525 9.390795 GATTGAATTGCTTATCACATATGTCAC 57.609 33.333 5.07 0.00 0.00 3.67
490 526 6.947258 TGAATTGCTTATCACATATGTCACG 58.053 36.000 5.07 0.00 0.00 4.35
491 527 6.538381 TGAATTGCTTATCACATATGTCACGT 59.462 34.615 5.07 0.00 0.00 4.49
492 528 6.925610 ATTGCTTATCACATATGTCACGTT 57.074 33.333 5.07 0.00 0.00 3.99
493 529 5.717038 TGCTTATCACATATGTCACGTTG 57.283 39.130 5.07 0.00 0.00 4.10
494 530 5.175127 TGCTTATCACATATGTCACGTTGT 58.825 37.500 5.07 0.00 0.00 3.32
495 531 6.334202 TGCTTATCACATATGTCACGTTGTA 58.666 36.000 5.07 0.00 0.00 2.41
496 532 6.814146 TGCTTATCACATATGTCACGTTGTAA 59.186 34.615 5.07 0.00 0.00 2.41
497 533 7.010091 TGCTTATCACATATGTCACGTTGTAAG 59.990 37.037 5.07 0.00 0.00 2.34
498 534 5.718649 ATCACATATGTCACGTTGTAAGC 57.281 39.130 5.07 0.00 0.00 3.09
499 535 4.816392 TCACATATGTCACGTTGTAAGCT 58.184 39.130 5.07 0.00 0.00 3.74
500 536 5.956642 TCACATATGTCACGTTGTAAGCTA 58.043 37.500 5.07 0.00 0.00 3.32
501 537 6.391537 TCACATATGTCACGTTGTAAGCTAA 58.608 36.000 5.07 0.00 0.00 3.09
502 538 7.039270 TCACATATGTCACGTTGTAAGCTAAT 58.961 34.615 5.07 0.00 0.00 1.73
503 539 7.222031 TCACATATGTCACGTTGTAAGCTAATC 59.778 37.037 5.07 0.00 0.00 1.75
504 540 7.010091 CACATATGTCACGTTGTAAGCTAATCA 59.990 37.037 5.07 0.00 0.00 2.57
505 541 7.222805 ACATATGTCACGTTGTAAGCTAATCAG 59.777 37.037 1.41 0.00 0.00 2.90
506 542 4.878439 TGTCACGTTGTAAGCTAATCAGT 58.122 39.130 0.00 0.00 0.00 3.41
507 543 5.294356 TGTCACGTTGTAAGCTAATCAGTT 58.706 37.500 0.00 0.00 0.00 3.16
508 544 5.756347 TGTCACGTTGTAAGCTAATCAGTTT 59.244 36.000 0.00 0.00 0.00 2.66
509 545 6.259167 TGTCACGTTGTAAGCTAATCAGTTTT 59.741 34.615 0.00 0.00 0.00 2.43
510 546 6.573725 GTCACGTTGTAAGCTAATCAGTTTTG 59.426 38.462 0.00 0.00 0.00 2.44
511 547 5.339611 CACGTTGTAAGCTAATCAGTTTTGC 59.660 40.000 0.00 0.00 36.47 3.68
512 548 5.238650 ACGTTGTAAGCTAATCAGTTTTGCT 59.761 36.000 0.00 0.00 46.35 3.91
513 549 6.425721 ACGTTGTAAGCTAATCAGTTTTGCTA 59.574 34.615 1.24 0.00 44.12 3.49
514 550 7.041644 ACGTTGTAAGCTAATCAGTTTTGCTAA 60.042 33.333 1.24 0.00 44.12 3.09
515 551 7.478667 CGTTGTAAGCTAATCAGTTTTGCTAAG 59.521 37.037 1.24 0.00 44.12 2.18
516 552 7.979444 TGTAAGCTAATCAGTTTTGCTAAGT 57.021 32.000 1.24 0.00 44.12 2.24
517 553 8.029642 TGTAAGCTAATCAGTTTTGCTAAGTC 57.970 34.615 1.24 0.00 44.12 3.01
518 554 7.878127 TGTAAGCTAATCAGTTTTGCTAAGTCT 59.122 33.333 1.24 0.00 44.12 3.24
519 555 7.751768 AAGCTAATCAGTTTTGCTAAGTCTT 57.248 32.000 1.24 0.00 44.12 3.01
520 556 8.848474 AAGCTAATCAGTTTTGCTAAGTCTTA 57.152 30.769 1.24 0.00 44.12 2.10
521 557 8.848474 AGCTAATCAGTTTTGCTAAGTCTTAA 57.152 30.769 0.00 0.00 43.27 1.85
522 558 9.454859 AGCTAATCAGTTTTGCTAAGTCTTAAT 57.545 29.630 0.00 0.00 43.27 1.40
523 559 9.709600 GCTAATCAGTTTTGCTAAGTCTTAATC 57.290 33.333 0.00 0.00 33.88 1.75
524 560 9.907576 CTAATCAGTTTTGCTAAGTCTTAATCG 57.092 33.333 0.00 0.00 0.00 3.34
525 561 8.547967 AATCAGTTTTGCTAAGTCTTAATCGA 57.452 30.769 0.00 0.00 0.00 3.59
526 562 7.347508 TCAGTTTTGCTAAGTCTTAATCGAC 57.652 36.000 0.00 0.00 0.00 4.20
527 563 6.926826 TCAGTTTTGCTAAGTCTTAATCGACA 59.073 34.615 0.00 0.00 36.38 4.35
528 564 7.602644 TCAGTTTTGCTAAGTCTTAATCGACAT 59.397 33.333 0.00 0.00 36.38 3.06
529 565 8.869897 CAGTTTTGCTAAGTCTTAATCGACATA 58.130 33.333 0.00 0.00 36.38 2.29
530 566 9.431887 AGTTTTGCTAAGTCTTAATCGACATAA 57.568 29.630 0.00 0.00 36.38 1.90
533 569 8.997621 TTGCTAAGTCTTAATCGACATAAACT 57.002 30.769 0.00 0.00 36.38 2.66
534 570 8.997621 TGCTAAGTCTTAATCGACATAAACTT 57.002 30.769 15.85 15.85 36.38 2.66
550 586 8.912787 ACATAAACTTAGTTATGTCTCAGTCG 57.087 34.615 0.00 0.00 46.83 4.18
551 587 8.737175 ACATAAACTTAGTTATGTCTCAGTCGA 58.263 33.333 0.00 0.00 46.83 4.20
552 588 9.737427 CATAAACTTAGTTATGTCTCAGTCGAT 57.263 33.333 0.00 0.00 36.91 3.59
553 589 9.737427 ATAAACTTAGTTATGTCTCAGTCGATG 57.263 33.333 0.00 0.00 0.00 3.84
554 590 6.761099 ACTTAGTTATGTCTCAGTCGATGT 57.239 37.500 0.00 0.00 0.00 3.06
555 591 7.159322 ACTTAGTTATGTCTCAGTCGATGTT 57.841 36.000 0.00 0.00 0.00 2.71
556 592 8.277490 ACTTAGTTATGTCTCAGTCGATGTTA 57.723 34.615 0.00 0.00 0.00 2.41
557 593 8.904834 ACTTAGTTATGTCTCAGTCGATGTTAT 58.095 33.333 0.00 0.00 0.00 1.89
561 597 9.900710 AGTTATGTCTCAGTCGATGTTATATTC 57.099 33.333 0.00 0.00 0.00 1.75
562 598 8.841822 GTTATGTCTCAGTCGATGTTATATTCG 58.158 37.037 0.00 0.00 36.72 3.34
563 599 6.373186 TGTCTCAGTCGATGTTATATTCGT 57.627 37.500 0.00 0.00 36.74 3.85
564 600 7.486802 TGTCTCAGTCGATGTTATATTCGTA 57.513 36.000 0.00 0.00 36.74 3.43
565 601 7.922837 TGTCTCAGTCGATGTTATATTCGTAA 58.077 34.615 0.00 0.00 36.74 3.18
566 602 8.400186 TGTCTCAGTCGATGTTATATTCGTAAA 58.600 33.333 0.00 0.00 36.74 2.01
567 603 9.229784 GTCTCAGTCGATGTTATATTCGTAAAA 57.770 33.333 0.00 0.00 36.74 1.52
568 604 9.961265 TCTCAGTCGATGTTATATTCGTAAAAT 57.039 29.630 0.00 0.00 36.74 1.82
570 606 9.738832 TCAGTCGATGTTATATTCGTAAAATCA 57.261 29.630 0.00 0.00 36.74 2.57
584 620 7.637709 TCGTAAAATCATACATCAAGATCCG 57.362 36.000 0.00 0.00 0.00 4.18
585 621 7.207383 TCGTAAAATCATACATCAAGATCCGT 58.793 34.615 0.00 0.00 0.00 4.69
586 622 7.169140 TCGTAAAATCATACATCAAGATCCGTG 59.831 37.037 0.00 0.00 0.00 4.94
587 623 7.042725 CGTAAAATCATACATCAAGATCCGTGT 60.043 37.037 0.00 0.00 0.00 4.49
588 624 9.256477 GTAAAATCATACATCAAGATCCGTGTA 57.744 33.333 0.00 0.00 0.00 2.90
589 625 8.731275 AAAATCATACATCAAGATCCGTGTAA 57.269 30.769 0.00 0.00 31.57 2.41
590 626 8.731275 AAATCATACATCAAGATCCGTGTAAA 57.269 30.769 0.00 0.00 31.57 2.01
591 627 8.731275 AATCATACATCAAGATCCGTGTAAAA 57.269 30.769 0.00 0.00 31.57 1.52
592 628 8.908786 ATCATACATCAAGATCCGTGTAAAAT 57.091 30.769 0.00 0.00 31.57 1.82
593 629 8.731275 TCATACATCAAGATCCGTGTAAAATT 57.269 30.769 0.00 0.00 31.57 1.82
594 630 9.173021 TCATACATCAAGATCCGTGTAAAATTT 57.827 29.630 0.00 0.00 31.57 1.82
595 631 9.787532 CATACATCAAGATCCGTGTAAAATTTT 57.212 29.630 8.75 8.75 31.57 1.82
597 633 8.110860 ACATCAAGATCCGTGTAAAATTTTCT 57.889 30.769 6.72 0.00 0.00 2.52
598 634 8.576442 ACATCAAGATCCGTGTAAAATTTTCTT 58.424 29.630 6.72 0.00 0.00 2.52
599 635 9.410556 CATCAAGATCCGTGTAAAATTTTCTTT 57.589 29.630 6.72 0.00 0.00 2.52
601 637 9.887406 TCAAGATCCGTGTAAAATTTTCTTTAC 57.113 29.630 6.72 0.56 40.63 2.01
602 638 9.672086 CAAGATCCGTGTAAAATTTTCTTTACA 57.328 29.630 6.72 3.41 45.19 2.41
663 699 6.589830 AATTGATTAAATCTCAGTCGACCG 57.410 37.500 13.01 1.05 0.00 4.79
664 700 4.976224 TGATTAAATCTCAGTCGACCGA 57.024 40.909 13.01 6.63 0.00 4.69
665 701 4.921547 TGATTAAATCTCAGTCGACCGAG 58.078 43.478 20.59 20.59 0.00 4.63
666 702 4.638865 TGATTAAATCTCAGTCGACCGAGA 59.361 41.667 28.64 28.64 42.25 4.04
667 703 2.923605 AAATCTCAGTCGACCGAGAC 57.076 50.000 28.97 0.00 40.92 3.36
668 704 1.096416 AATCTCAGTCGACCGAGACC 58.904 55.000 28.97 0.00 40.92 3.85
669 705 0.253610 ATCTCAGTCGACCGAGACCT 59.746 55.000 28.97 14.90 40.92 3.85
670 706 0.391395 TCTCAGTCGACCGAGACCTC 60.391 60.000 24.28 0.00 41.83 3.85
671 707 1.370587 CTCAGTCGACCGAGACCTCC 61.371 65.000 21.82 0.00 41.83 4.30
672 708 2.045143 AGTCGACCGAGACCTCCC 60.045 66.667 13.01 0.00 41.83 4.30
673 709 3.139469 GTCGACCGAGACCTCCCC 61.139 72.222 3.51 0.00 35.22 4.81
674 710 4.437587 TCGACCGAGACCTCCCCC 62.438 72.222 0.00 0.00 0.00 5.40
675 711 4.753662 CGACCGAGACCTCCCCCA 62.754 72.222 0.00 0.00 0.00 4.96
676 712 3.075641 GACCGAGACCTCCCCCAC 61.076 72.222 0.00 0.00 0.00 4.61
692 728 2.359143 CCCCACCCAATATCACCAACAT 60.359 50.000 0.00 0.00 0.00 2.71
721 759 2.504175 ACATACAAGCCCACCGACTAAT 59.496 45.455 0.00 0.00 0.00 1.73
738 778 1.732941 AATGCAACGATCGGCTACAA 58.267 45.000 20.98 0.00 0.00 2.41
746 786 1.535437 CGATCGGCTACAACACCTACC 60.535 57.143 7.38 0.00 0.00 3.18
747 787 0.828677 ATCGGCTACAACACCTACCC 59.171 55.000 0.00 0.00 0.00 3.69
748 788 1.219935 CGGCTACAACACCTACCCC 59.780 63.158 0.00 0.00 0.00 4.95
749 789 1.605992 GGCTACAACACCTACCCCC 59.394 63.158 0.00 0.00 0.00 5.40
774 814 2.029369 TTAACGTTCCCGCGCTGT 59.971 55.556 2.82 0.00 37.70 4.40
829 869 0.816825 CAGTGCCAGTGTCTGCTTGT 60.817 55.000 0.00 0.00 0.00 3.16
830 870 0.533755 AGTGCCAGTGTCTGCTTGTC 60.534 55.000 0.00 0.00 0.00 3.18
833 873 1.302832 CCAGTGTCTGCTTGTCCCC 60.303 63.158 0.00 0.00 0.00 4.81
835 875 1.462238 AGTGTCTGCTTGTCCCCCT 60.462 57.895 0.00 0.00 0.00 4.79
842 882 0.909610 TGCTTGTCCCCCTTCGATCT 60.910 55.000 0.00 0.00 0.00 2.75
845 885 2.104963 GCTTGTCCCCCTTCGATCTATT 59.895 50.000 0.00 0.00 0.00 1.73
846 886 3.323979 GCTTGTCCCCCTTCGATCTATTA 59.676 47.826 0.00 0.00 0.00 0.98
867 907 0.390860 ATCGCCTTCTTCCTCCATCG 59.609 55.000 0.00 0.00 0.00 3.84
934 974 9.859427 CAAGACATCAACAACAAAACCATATAT 57.141 29.630 0.00 0.00 0.00 0.86
980 1020 7.742767 TGGTAAAGAAAGAGTAAGCTACCTTT 58.257 34.615 0.00 0.00 34.29 3.11
1038 1080 0.391661 GCTCCAAGATCGTCAAGCCA 60.392 55.000 1.66 0.00 0.00 4.75
1203 1245 3.050275 GCCCAAGTGCTGTCCGTC 61.050 66.667 0.00 0.00 0.00 4.79
1206 1248 0.537188 CCCAAGTGCTGTCCGTCTAT 59.463 55.000 0.00 0.00 0.00 1.98
1221 1263 0.752009 TCTATCGCCTCTTCGCTGGT 60.752 55.000 0.00 0.00 0.00 4.00
1467 1509 2.108514 CAACCATGCCGTCGCTGAT 61.109 57.895 0.00 0.00 35.36 2.90
1605 1658 1.550065 CGATCGTCGAGTTTGAGCAT 58.450 50.000 7.03 0.00 43.74 3.79
1623 1676 0.250640 ATCGGGGCGTCGAGTACTAT 60.251 55.000 0.00 0.00 42.69 2.12
2324 2392 5.537188 CTGCTACTCCATGGACTAAAGATC 58.463 45.833 11.44 0.00 0.00 2.75
2326 2394 5.069648 TGCTACTCCATGGACTAAAGATCAG 59.930 44.000 11.44 0.00 0.00 2.90
2332 2400 6.763355 TCCATGGACTAAAGATCAGCTAATC 58.237 40.000 11.44 0.00 0.00 1.75
2334 2402 7.016957 TCCATGGACTAAAGATCAGCTAATCAT 59.983 37.037 11.44 0.00 0.00 2.45
2335 2403 7.333921 CCATGGACTAAAGATCAGCTAATCATC 59.666 40.741 5.56 0.00 0.00 2.92
2336 2404 7.365497 TGGACTAAAGATCAGCTAATCATCA 57.635 36.000 0.00 0.00 0.00 3.07
2337 2405 7.795047 TGGACTAAAGATCAGCTAATCATCAA 58.205 34.615 0.00 0.00 0.00 2.57
2338 2406 7.930325 TGGACTAAAGATCAGCTAATCATCAAG 59.070 37.037 0.00 0.00 0.00 3.02
2339 2407 7.095271 GGACTAAAGATCAGCTAATCATCAAGC 60.095 40.741 0.00 0.00 39.08 4.01
2340 2408 7.278135 ACTAAAGATCAGCTAATCATCAAGCA 58.722 34.615 0.00 0.00 41.32 3.91
2341 2409 6.621316 AAAGATCAGCTAATCATCAAGCAG 57.379 37.500 0.00 0.00 41.32 4.24
2342 2410 4.066490 AGATCAGCTAATCATCAAGCAGC 58.934 43.478 0.00 0.00 41.32 5.25
2343 2411 3.271055 TCAGCTAATCATCAAGCAGCA 57.729 42.857 0.00 0.00 41.32 4.41
2344 2412 3.613030 TCAGCTAATCATCAAGCAGCAA 58.387 40.909 0.00 0.00 41.32 3.91
2368 2436 1.779569 GCGTGCGGCTACATATTACT 58.220 50.000 0.00 0.00 39.11 2.24
2369 2437 1.455786 GCGTGCGGCTACATATTACTG 59.544 52.381 0.00 0.00 39.11 2.74
2370 2438 2.739292 CGTGCGGCTACATATTACTGT 58.261 47.619 0.00 0.00 0.00 3.55
2410 2478 5.663795 TCAGCGATTTGAGCTTAATCATC 57.336 39.130 17.51 7.70 44.06 2.92
2492 2560 4.151157 TCCGTGTATCTATCGTATCACGTG 59.849 45.833 9.94 9.94 44.23 4.49
2497 2565 8.538039 CGTGTATCTATCGTATCACGTGTATAT 58.462 37.037 16.51 4.34 43.14 0.86
2617 2688 1.280066 CTGTGCTGTGTTTTGGTTGC 58.720 50.000 0.00 0.00 0.00 4.17
2647 2719 8.592105 TCTTTTCCATTTGTGATTGATTTGAC 57.408 30.769 0.00 0.00 0.00 3.18
2659 2731 7.971722 TGTGATTGATTTGACATGATTGATCAC 59.028 33.333 0.00 8.39 40.03 3.06
2679 2751 1.832608 CCCCTCGATCATGGACGGA 60.833 63.158 11.17 0.00 0.00 4.69
2725 2808 0.235665 ATGTTGCTTCTGTTGTCGCG 59.764 50.000 0.00 0.00 0.00 5.87
2745 2828 2.040178 GTACTGTAGCCTAGCCATGGT 58.960 52.381 14.67 2.69 0.00 3.55
2754 2837 4.147321 AGCCTAGCCATGGTAATCAAATG 58.853 43.478 14.67 0.00 0.00 2.32
2760 2843 3.128589 GCCATGGTAATCAAATGTCGTGT 59.871 43.478 14.67 0.00 0.00 4.49
2876 2959 4.647424 ACAGAGGATCGTCTGAATTCTC 57.353 45.455 38.66 15.09 46.02 2.87
3012 3099 2.308570 ACCCCTGTGATTATGAGCAACA 59.691 45.455 0.00 0.00 0.00 3.33
3046 3133 2.480555 CGCAGCCGAATCACAACC 59.519 61.111 0.00 0.00 36.29 3.77
3053 3146 3.057315 CAGCCGAATCACAACCAAAATCT 60.057 43.478 0.00 0.00 0.00 2.40
3103 3197 9.513906 AGTTTCCAAAAATTCTCAAAGGAAAAA 57.486 25.926 0.00 0.00 43.02 1.94
3107 3201 9.460019 TCCAAAAATTCTCAAAGGAAAAACATT 57.540 25.926 0.00 0.00 0.00 2.71
3111 3205 8.454570 AAATTCTCAAAGGAAAAACATTGCAT 57.545 26.923 0.00 0.00 0.00 3.96
3113 3207 4.751098 TCTCAAAGGAAAAACATTGCATGC 59.249 37.500 11.82 11.82 0.00 4.06
3226 3334 6.845302 TGATGTTGTTTTGCTCATCACTATC 58.155 36.000 0.00 0.00 40.73 2.08
3231 3339 6.441093 TGTTTTGCTCATCACTATCCATTC 57.559 37.500 0.00 0.00 0.00 2.67
3235 3343 8.844244 GTTTTGCTCATCACTATCCATTCTTAT 58.156 33.333 0.00 0.00 0.00 1.73
3292 3401 7.653311 AGTTTGACCTAGAAAATTTGCATGTTC 59.347 33.333 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.943036 AGATCCGAGAGTCCTACTCC 57.057 55.000 3.49 0.00 46.18 3.85
5 6 6.834451 TGAAATTTAGATCCGAGAGTCCTACT 59.166 38.462 0.00 0.00 0.00 2.57
6 7 7.040473 TGAAATTTAGATCCGAGAGTCCTAC 57.960 40.000 0.00 0.00 0.00 3.18
7 8 7.308649 CGATGAAATTTAGATCCGAGAGTCCTA 60.309 40.741 0.00 0.00 0.00 2.94
8 9 6.515862 CGATGAAATTTAGATCCGAGAGTCCT 60.516 42.308 0.00 0.00 0.00 3.85
9 10 5.631512 CGATGAAATTTAGATCCGAGAGTCC 59.368 44.000 0.00 0.00 0.00 3.85
10 11 6.143118 CACGATGAAATTTAGATCCGAGAGTC 59.857 42.308 0.00 0.00 0.00 3.36
11 12 5.980116 CACGATGAAATTTAGATCCGAGAGT 59.020 40.000 0.00 0.00 0.00 3.24
12 13 5.980116 ACACGATGAAATTTAGATCCGAGAG 59.020 40.000 0.00 0.00 0.00 3.20
13 14 5.902681 ACACGATGAAATTTAGATCCGAGA 58.097 37.500 0.00 0.00 0.00 4.04
14 15 7.139392 TCTACACGATGAAATTTAGATCCGAG 58.861 38.462 0.00 0.00 0.00 4.63
15 16 7.034685 TCTACACGATGAAATTTAGATCCGA 57.965 36.000 0.00 0.00 0.00 4.55
62 64 9.104965 GTATATAAAATGCTATATTCCCGCACA 57.895 33.333 0.00 0.00 36.37 4.57
63 65 9.326413 AGTATATAAAATGCTATATTCCCGCAC 57.674 33.333 0.00 0.00 36.37 5.34
81 83 6.266103 CGGGACAACTTACTGGGAGTATATAA 59.734 42.308 0.00 0.00 29.64 0.98
114 123 4.405680 AGCTGCACATACACTGACCTATTA 59.594 41.667 1.02 0.00 0.00 0.98
117 126 2.094026 CAGCTGCACATACACTGACCTA 60.094 50.000 0.00 0.00 0.00 3.08
119 128 1.081892 CAGCTGCACATACACTGACC 58.918 55.000 0.00 0.00 0.00 4.02
124 133 2.413112 CAGTGTACAGCTGCACATACAC 59.587 50.000 26.25 26.25 45.04 2.90
157 166 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
159 168 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
160 169 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
161 170 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
162 171 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
163 172 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
164 173 9.322776 CAAATCTAAGACAAGAATTTTGAGACG 57.677 33.333 7.18 0.00 31.51 4.18
173 182 9.646427 GTGTCTAGACAAATCTAAGACAAGAAT 57.354 33.333 26.74 0.00 41.73 2.40
174 183 8.638873 TGTGTCTAGACAAATCTAAGACAAGAA 58.361 33.333 26.74 0.00 41.73 2.52
175 184 8.178313 TGTGTCTAGACAAATCTAAGACAAGA 57.822 34.615 26.74 0.00 41.73 3.02
176 185 8.300286 TCTGTGTCTAGACAAATCTAAGACAAG 58.700 37.037 26.74 6.24 41.73 3.16
177 186 8.178313 TCTGTGTCTAGACAAATCTAAGACAA 57.822 34.615 26.74 6.23 41.73 3.18
178 187 7.761038 TCTGTGTCTAGACAAATCTAAGACA 57.239 36.000 26.74 15.38 43.77 3.41
179 188 8.247562 ACATCTGTGTCTAGACAAATCTAAGAC 58.752 37.037 26.74 11.67 43.77 3.01
180 189 8.354711 ACATCTGTGTCTAGACAAATCTAAGA 57.645 34.615 26.74 19.94 43.77 2.10
183 192 9.634021 AGATACATCTGTGTCTAGACAAATCTA 57.366 33.333 26.74 12.69 43.30 1.98
184 193 8.532186 AGATACATCTGTGTCTAGACAAATCT 57.468 34.615 26.74 16.37 43.30 2.40
210 219 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
211 220 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
212 221 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
213 222 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
214 223 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
215 224 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
216 225 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
217 226 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
218 227 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
219 228 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
230 239 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
231 240 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
232 241 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
233 242 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
234 243 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
235 244 9.582431 TTTTGTCTTAGATTTGTCTAGATACGG 57.418 33.333 0.00 0.00 0.00 4.02
250 259 9.151471 CCTTCGTCTCATAATTTTTGTCTTAGA 57.849 33.333 0.00 0.00 0.00 2.10
251 260 8.391106 CCCTTCGTCTCATAATTTTTGTCTTAG 58.609 37.037 0.00 0.00 0.00 2.18
252 261 8.098286 TCCCTTCGTCTCATAATTTTTGTCTTA 58.902 33.333 0.00 0.00 0.00 2.10
253 262 6.940298 TCCCTTCGTCTCATAATTTTTGTCTT 59.060 34.615 0.00 0.00 0.00 3.01
254 263 6.472887 TCCCTTCGTCTCATAATTTTTGTCT 58.527 36.000 0.00 0.00 0.00 3.41
255 264 6.371825 ACTCCCTTCGTCTCATAATTTTTGTC 59.628 38.462 0.00 0.00 0.00 3.18
256 265 6.238648 ACTCCCTTCGTCTCATAATTTTTGT 58.761 36.000 0.00 0.00 0.00 2.83
257 266 6.743575 ACTCCCTTCGTCTCATAATTTTTG 57.256 37.500 0.00 0.00 0.00 2.44
258 267 7.621796 ACTACTCCCTTCGTCTCATAATTTTT 58.378 34.615 0.00 0.00 0.00 1.94
259 268 7.184067 ACTACTCCCTTCGTCTCATAATTTT 57.816 36.000 0.00 0.00 0.00 1.82
260 269 6.793505 ACTACTCCCTTCGTCTCATAATTT 57.206 37.500 0.00 0.00 0.00 1.82
261 270 6.793505 AACTACTCCCTTCGTCTCATAATT 57.206 37.500 0.00 0.00 0.00 1.40
262 271 6.793505 AAACTACTCCCTTCGTCTCATAAT 57.206 37.500 0.00 0.00 0.00 1.28
263 272 6.660521 TGTAAACTACTCCCTTCGTCTCATAA 59.339 38.462 0.00 0.00 0.00 1.90
264 273 6.182627 TGTAAACTACTCCCTTCGTCTCATA 58.817 40.000 0.00 0.00 0.00 2.15
265 274 5.014858 TGTAAACTACTCCCTTCGTCTCAT 58.985 41.667 0.00 0.00 0.00 2.90
266 275 4.401022 TGTAAACTACTCCCTTCGTCTCA 58.599 43.478 0.00 0.00 0.00 3.27
267 276 5.579564 ATGTAAACTACTCCCTTCGTCTC 57.420 43.478 0.00 0.00 0.00 3.36
268 277 5.997384 AATGTAAACTACTCCCTTCGTCT 57.003 39.130 0.00 0.00 0.00 4.18
269 278 7.092716 TGTTAATGTAAACTACTCCCTTCGTC 58.907 38.462 0.00 0.00 0.00 4.20
270 279 6.996509 TGTTAATGTAAACTACTCCCTTCGT 58.003 36.000 0.00 0.00 0.00 3.85
271 280 7.894376 TTGTTAATGTAAACTACTCCCTTCG 57.106 36.000 0.00 0.00 0.00 3.79
272 281 9.281371 ACTTTGTTAATGTAAACTACTCCCTTC 57.719 33.333 0.00 0.00 0.00 3.46
273 282 9.063615 CACTTTGTTAATGTAAACTACTCCCTT 57.936 33.333 0.00 0.00 0.00 3.95
274 283 8.434392 TCACTTTGTTAATGTAAACTACTCCCT 58.566 33.333 0.00 0.00 0.00 4.20
275 284 8.611654 TCACTTTGTTAATGTAAACTACTCCC 57.388 34.615 0.00 0.00 0.00 4.30
276 285 9.485206 TCTCACTTTGTTAATGTAAACTACTCC 57.515 33.333 0.00 0.00 0.00 3.85
278 287 8.975439 CGTCTCACTTTGTTAATGTAAACTACT 58.025 33.333 0.00 0.00 0.00 2.57
279 288 8.971321 TCGTCTCACTTTGTTAATGTAAACTAC 58.029 33.333 0.00 0.00 0.00 2.73
280 289 9.188588 CTCGTCTCACTTTGTTAATGTAAACTA 57.811 33.333 0.00 0.00 0.00 2.24
281 290 7.170998 CCTCGTCTCACTTTGTTAATGTAAACT 59.829 37.037 0.00 0.00 0.00 2.66
282 291 7.042254 ACCTCGTCTCACTTTGTTAATGTAAAC 60.042 37.037 0.00 0.00 0.00 2.01
283 292 6.987992 ACCTCGTCTCACTTTGTTAATGTAAA 59.012 34.615 0.00 0.00 0.00 2.01
284 293 6.518493 ACCTCGTCTCACTTTGTTAATGTAA 58.482 36.000 0.00 0.00 0.00 2.41
289 298 5.533903 AGTCTACCTCGTCTCACTTTGTTAA 59.466 40.000 0.00 0.00 0.00 2.01
291 300 3.890147 AGTCTACCTCGTCTCACTTTGTT 59.110 43.478 0.00 0.00 0.00 2.83
306 315 1.093159 ATCGACACGGTCAGTCTACC 58.907 55.000 0.00 0.00 33.89 3.18
310 319 0.039437 ACACATCGACACGGTCAGTC 60.039 55.000 0.00 0.00 32.09 3.51
351 368 4.373527 TGACACGGTAATTATCAATCGGG 58.626 43.478 0.00 0.00 0.00 5.14
359 376 5.287226 GTCGGATCTTGACACGGTAATTAT 58.713 41.667 12.01 0.00 36.37 1.28
455 491 9.187996 TGTGATAAGCAATTCAATCTAATCCAA 57.812 29.630 0.00 0.00 0.00 3.53
456 492 8.750515 TGTGATAAGCAATTCAATCTAATCCA 57.249 30.769 0.00 0.00 0.00 3.41
462 498 9.346005 TGACATATGTGATAAGCAATTCAATCT 57.654 29.630 14.43 0.00 0.00 2.40
463 499 9.390795 GTGACATATGTGATAAGCAATTCAATC 57.609 33.333 14.43 0.00 0.00 2.67
464 500 8.071967 CGTGACATATGTGATAAGCAATTCAAT 58.928 33.333 14.43 0.00 0.00 2.57
465 501 7.065683 ACGTGACATATGTGATAAGCAATTCAA 59.934 33.333 14.43 0.00 0.00 2.69
466 502 6.538381 ACGTGACATATGTGATAAGCAATTCA 59.462 34.615 14.43 0.00 0.00 2.57
467 503 6.948353 ACGTGACATATGTGATAAGCAATTC 58.052 36.000 14.43 0.00 0.00 2.17
468 504 6.925610 ACGTGACATATGTGATAAGCAATT 57.074 33.333 14.43 0.00 0.00 2.32
469 505 6.316140 ACAACGTGACATATGTGATAAGCAAT 59.684 34.615 14.43 0.00 0.00 3.56
470 506 5.641636 ACAACGTGACATATGTGATAAGCAA 59.358 36.000 14.43 0.00 0.00 3.91
471 507 5.175127 ACAACGTGACATATGTGATAAGCA 58.825 37.500 14.43 0.37 0.00 3.91
472 508 5.718649 ACAACGTGACATATGTGATAAGC 57.281 39.130 14.43 0.00 0.00 3.09
473 509 7.222805 AGCTTACAACGTGACATATGTGATAAG 59.777 37.037 14.43 10.18 33.63 1.73
474 510 7.039270 AGCTTACAACGTGACATATGTGATAA 58.961 34.615 14.43 0.00 0.00 1.75
475 511 6.569780 AGCTTACAACGTGACATATGTGATA 58.430 36.000 14.43 0.00 0.00 2.15
476 512 5.419542 AGCTTACAACGTGACATATGTGAT 58.580 37.500 14.43 0.00 0.00 3.06
477 513 4.816392 AGCTTACAACGTGACATATGTGA 58.184 39.130 14.43 0.68 0.00 3.58
478 514 6.641176 TTAGCTTACAACGTGACATATGTG 57.359 37.500 14.43 1.19 0.00 3.21
479 515 7.039270 TGATTAGCTTACAACGTGACATATGT 58.961 34.615 8.43 8.43 0.00 2.29
480 516 7.222805 ACTGATTAGCTTACAACGTGACATATG 59.777 37.037 0.00 0.00 0.00 1.78
481 517 7.265673 ACTGATTAGCTTACAACGTGACATAT 58.734 34.615 0.00 0.00 0.00 1.78
482 518 6.627243 ACTGATTAGCTTACAACGTGACATA 58.373 36.000 0.00 0.00 0.00 2.29
483 519 5.479306 ACTGATTAGCTTACAACGTGACAT 58.521 37.500 0.00 0.00 0.00 3.06
484 520 4.878439 ACTGATTAGCTTACAACGTGACA 58.122 39.130 0.00 0.00 0.00 3.58
485 521 5.840940 AACTGATTAGCTTACAACGTGAC 57.159 39.130 0.00 0.00 0.00 3.67
486 522 6.655062 CAAAACTGATTAGCTTACAACGTGA 58.345 36.000 0.00 0.00 0.00 4.35
487 523 5.339611 GCAAAACTGATTAGCTTACAACGTG 59.660 40.000 0.00 0.00 0.00 4.49
488 524 5.238650 AGCAAAACTGATTAGCTTACAACGT 59.761 36.000 0.00 0.00 29.98 3.99
489 525 5.689819 AGCAAAACTGATTAGCTTACAACG 58.310 37.500 0.00 0.00 29.98 4.10
490 526 8.290325 ACTTAGCAAAACTGATTAGCTTACAAC 58.710 33.333 0.00 0.00 36.80 3.32
491 527 8.391075 ACTTAGCAAAACTGATTAGCTTACAA 57.609 30.769 0.00 0.00 36.80 2.41
492 528 7.878127 AGACTTAGCAAAACTGATTAGCTTACA 59.122 33.333 0.00 0.00 36.80 2.41
493 529 8.257830 AGACTTAGCAAAACTGATTAGCTTAC 57.742 34.615 0.00 0.00 36.80 2.34
494 530 8.848474 AAGACTTAGCAAAACTGATTAGCTTA 57.152 30.769 0.00 0.00 36.80 3.09
495 531 7.751768 AAGACTTAGCAAAACTGATTAGCTT 57.248 32.000 0.00 0.00 36.80 3.74
496 532 8.848474 TTAAGACTTAGCAAAACTGATTAGCT 57.152 30.769 0.00 0.00 39.22 3.32
497 533 9.709600 GATTAAGACTTAGCAAAACTGATTAGC 57.290 33.333 0.00 0.00 0.00 3.09
498 534 9.907576 CGATTAAGACTTAGCAAAACTGATTAG 57.092 33.333 0.00 0.00 0.00 1.73
499 535 9.647797 TCGATTAAGACTTAGCAAAACTGATTA 57.352 29.630 0.00 0.00 0.00 1.75
500 536 8.443937 GTCGATTAAGACTTAGCAAAACTGATT 58.556 33.333 0.00 0.00 38.09 2.57
501 537 7.602644 TGTCGATTAAGACTTAGCAAAACTGAT 59.397 33.333 0.00 0.00 41.47 2.90
502 538 6.926826 TGTCGATTAAGACTTAGCAAAACTGA 59.073 34.615 0.00 0.00 41.47 3.41
503 539 7.117241 TGTCGATTAAGACTTAGCAAAACTG 57.883 36.000 0.00 0.00 41.47 3.16
504 540 7.907214 ATGTCGATTAAGACTTAGCAAAACT 57.093 32.000 0.00 0.00 41.47 2.66
507 543 9.431887 AGTTTATGTCGATTAAGACTTAGCAAA 57.568 29.630 0.00 0.00 41.47 3.68
508 544 8.997621 AGTTTATGTCGATTAAGACTTAGCAA 57.002 30.769 0.00 0.00 41.47 3.91
509 545 8.997621 AAGTTTATGTCGATTAAGACTTAGCA 57.002 30.769 0.00 0.00 41.47 3.49
526 562 9.737427 ATCGACTGAGACATAACTAAGTTTATG 57.263 33.333 0.00 0.00 42.76 1.90
527 563 9.737427 CATCGACTGAGACATAACTAAGTTTAT 57.263 33.333 0.00 0.00 32.29 1.40
528 564 8.737175 ACATCGACTGAGACATAACTAAGTTTA 58.263 33.333 0.00 0.00 32.29 2.01
529 565 7.603651 ACATCGACTGAGACATAACTAAGTTT 58.396 34.615 0.00 0.00 32.29 2.66
530 566 7.159322 ACATCGACTGAGACATAACTAAGTT 57.841 36.000 0.00 0.00 32.29 2.66
531 567 6.761099 ACATCGACTGAGACATAACTAAGT 57.239 37.500 0.00 0.00 34.59 2.24
535 571 9.900710 GAATATAACATCGACTGAGACATAACT 57.099 33.333 0.00 0.00 0.00 2.24
536 572 8.841822 CGAATATAACATCGACTGAGACATAAC 58.158 37.037 0.00 0.00 41.43 1.89
537 573 8.565416 ACGAATATAACATCGACTGAGACATAA 58.435 33.333 11.44 0.00 41.43 1.90
538 574 8.095937 ACGAATATAACATCGACTGAGACATA 57.904 34.615 11.44 0.00 41.43 2.29
539 575 6.971602 ACGAATATAACATCGACTGAGACAT 58.028 36.000 11.44 0.00 41.43 3.06
540 576 6.373186 ACGAATATAACATCGACTGAGACA 57.627 37.500 11.44 0.00 41.43 3.41
541 577 8.778141 TTTACGAATATAACATCGACTGAGAC 57.222 34.615 11.44 0.00 41.43 3.36
542 578 9.961265 ATTTTACGAATATAACATCGACTGAGA 57.039 29.630 11.44 0.00 41.43 3.27
544 580 9.738832 TGATTTTACGAATATAACATCGACTGA 57.261 29.630 11.44 0.00 41.43 3.41
558 594 8.712363 CGGATCTTGATGTATGATTTTACGAAT 58.288 33.333 0.00 0.00 0.00 3.34
559 595 7.709182 ACGGATCTTGATGTATGATTTTACGAA 59.291 33.333 0.00 0.00 0.00 3.85
560 596 7.169140 CACGGATCTTGATGTATGATTTTACGA 59.831 37.037 0.00 0.00 0.00 3.43
561 597 7.042725 ACACGGATCTTGATGTATGATTTTACG 60.043 37.037 0.00 0.00 0.00 3.18
562 598 8.142994 ACACGGATCTTGATGTATGATTTTAC 57.857 34.615 0.00 0.00 0.00 2.01
563 599 9.825109 TTACACGGATCTTGATGTATGATTTTA 57.175 29.630 0.00 0.00 0.00 1.52
564 600 8.731275 TTACACGGATCTTGATGTATGATTTT 57.269 30.769 0.00 0.00 0.00 1.82
565 601 8.731275 TTTACACGGATCTTGATGTATGATTT 57.269 30.769 0.00 0.00 0.00 2.17
566 602 8.731275 TTTTACACGGATCTTGATGTATGATT 57.269 30.769 0.00 0.00 0.00 2.57
567 603 8.908786 ATTTTACACGGATCTTGATGTATGAT 57.091 30.769 0.00 0.00 0.00 2.45
568 604 8.731275 AATTTTACACGGATCTTGATGTATGA 57.269 30.769 0.00 0.00 0.00 2.15
569 605 9.787532 AAAATTTTACACGGATCTTGATGTATG 57.212 29.630 0.37 0.00 0.00 2.39
571 607 9.226606 AGAAAATTTTACACGGATCTTGATGTA 57.773 29.630 2.75 0.00 0.00 2.29
572 608 8.110860 AGAAAATTTTACACGGATCTTGATGT 57.889 30.769 2.75 0.00 0.00 3.06
573 609 8.970691 AAGAAAATTTTACACGGATCTTGATG 57.029 30.769 2.75 0.00 0.00 3.07
575 611 9.887406 GTAAAGAAAATTTTACACGGATCTTGA 57.113 29.630 2.75 0.00 41.16 3.02
576 612 9.672086 TGTAAAGAAAATTTTACACGGATCTTG 57.328 29.630 2.75 0.00 44.35 3.02
637 673 8.600625 CGGTCGACTGAGATTTAATCAATTTTA 58.399 33.333 20.01 0.00 0.00 1.52
638 674 7.333423 TCGGTCGACTGAGATTTAATCAATTTT 59.667 33.333 23.11 0.00 0.00 1.82
639 675 6.816640 TCGGTCGACTGAGATTTAATCAATTT 59.183 34.615 23.11 0.00 0.00 1.82
640 676 6.338146 TCGGTCGACTGAGATTTAATCAATT 58.662 36.000 23.11 0.00 0.00 2.32
641 677 5.902681 TCGGTCGACTGAGATTTAATCAAT 58.097 37.500 23.11 0.00 0.00 2.57
642 678 5.319140 TCGGTCGACTGAGATTTAATCAA 57.681 39.130 23.11 0.00 0.00 2.57
643 679 4.976224 TCGGTCGACTGAGATTTAATCA 57.024 40.909 23.11 0.00 0.00 2.57
653 689 1.376942 GGAGGTCTCGGTCGACTGA 60.377 63.158 25.02 25.02 34.38 3.41
654 690 2.408241 GGGAGGTCTCGGTCGACTG 61.408 68.421 18.66 18.66 34.38 3.51
655 691 2.045143 GGGAGGTCTCGGTCGACT 60.045 66.667 16.46 0.00 34.38 4.18
656 692 3.139469 GGGGAGGTCTCGGTCGAC 61.139 72.222 7.13 7.13 0.00 4.20
657 693 4.437587 GGGGGAGGTCTCGGTCGA 62.438 72.222 0.00 0.00 0.00 4.20
658 694 4.753662 TGGGGGAGGTCTCGGTCG 62.754 72.222 0.00 0.00 0.00 4.79
659 695 3.075641 GTGGGGGAGGTCTCGGTC 61.076 72.222 0.00 0.00 0.00 4.79
660 696 4.716977 GGTGGGGGAGGTCTCGGT 62.717 72.222 0.00 0.00 0.00 4.69
662 698 4.715130 TGGGTGGGGGAGGTCTCG 62.715 72.222 0.00 0.00 0.00 4.04
663 699 0.327191 TATTGGGTGGGGGAGGTCTC 60.327 60.000 0.00 0.00 0.00 3.36
664 700 0.350541 ATATTGGGTGGGGGAGGTCT 59.649 55.000 0.00 0.00 0.00 3.85
665 701 0.771755 GATATTGGGTGGGGGAGGTC 59.228 60.000 0.00 0.00 0.00 3.85
666 702 0.047176 TGATATTGGGTGGGGGAGGT 59.953 55.000 0.00 0.00 0.00 3.85
667 703 0.478507 GTGATATTGGGTGGGGGAGG 59.521 60.000 0.00 0.00 0.00 4.30
668 704 0.478507 GGTGATATTGGGTGGGGGAG 59.521 60.000 0.00 0.00 0.00 4.30
669 705 0.253868 TGGTGATATTGGGTGGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
670 706 0.633921 TTGGTGATATTGGGTGGGGG 59.366 55.000 0.00 0.00 0.00 5.40
671 707 1.006519 TGTTGGTGATATTGGGTGGGG 59.993 52.381 0.00 0.00 0.00 4.96
672 708 2.523325 TGTTGGTGATATTGGGTGGG 57.477 50.000 0.00 0.00 0.00 4.61
673 709 3.364549 ACATGTTGGTGATATTGGGTGG 58.635 45.455 0.00 0.00 0.00 4.61
674 710 5.417266 TGTAACATGTTGGTGATATTGGGTG 59.583 40.000 21.42 0.00 0.00 4.61
675 711 5.575157 TGTAACATGTTGGTGATATTGGGT 58.425 37.500 21.42 0.00 0.00 4.51
676 712 6.713762 ATGTAACATGTTGGTGATATTGGG 57.286 37.500 21.42 0.00 0.00 4.12
692 728 4.519213 GGTGGGCTTGTATGTATGTAACA 58.481 43.478 0.00 0.00 43.86 2.41
721 759 0.319986 TGTTGTAGCCGATCGTTGCA 60.320 50.000 15.09 8.83 0.00 4.08
746 786 0.674581 GAACGTTAACGGGAAGGGGG 60.675 60.000 29.81 1.53 44.95 5.40
747 787 0.674581 GGAACGTTAACGGGAAGGGG 60.675 60.000 29.81 2.25 44.95 4.79
748 788 0.674581 GGGAACGTTAACGGGAAGGG 60.675 60.000 29.81 2.99 44.95 3.95
749 789 2.845019 GGGAACGTTAACGGGAAGG 58.155 57.895 29.81 3.73 44.95 3.46
774 814 2.352030 CCGGAGCGCGGTTATAAATAGA 60.352 50.000 14.00 0.00 0.00 1.98
842 882 4.480115 TGGAGGAAGAAGGCGATCTAATA 58.520 43.478 0.00 0.00 0.00 0.98
845 885 2.454336 TGGAGGAAGAAGGCGATCTA 57.546 50.000 0.00 0.00 0.00 1.98
846 886 1.691434 GATGGAGGAAGAAGGCGATCT 59.309 52.381 0.00 0.00 0.00 2.75
867 907 1.134788 AGATACCGGCAGTGCACTTAC 60.135 52.381 18.94 12.55 0.00 2.34
899 939 1.728971 GTTGATGTCTTGAGTGCTCGG 59.271 52.381 0.00 0.00 0.00 4.63
950 990 9.872721 GTAGCTTACTCTTTCTTTACCAAGTAT 57.127 33.333 0.00 0.00 0.00 2.12
951 991 8.309656 GGTAGCTTACTCTTTCTTTACCAAGTA 58.690 37.037 0.00 0.00 31.78 2.24
952 992 7.016366 AGGTAGCTTACTCTTTCTTTACCAAGT 59.984 37.037 0.00 0.00 33.44 3.16
953 993 7.387643 AGGTAGCTTACTCTTTCTTTACCAAG 58.612 38.462 0.00 0.00 33.44 3.61
954 994 7.312415 AGGTAGCTTACTCTTTCTTTACCAA 57.688 36.000 0.00 0.00 33.44 3.67
955 995 6.930068 AGGTAGCTTACTCTTTCTTTACCA 57.070 37.500 0.00 0.00 33.44 3.25
956 996 8.504815 CAAAAGGTAGCTTACTCTTTCTTTACC 58.495 37.037 7.76 0.00 32.10 2.85
965 1005 4.760878 GCTAGCAAAAGGTAGCTTACTCT 58.239 43.478 10.63 7.52 42.05 3.24
1164 1206 4.193334 CCGCGCTCGATGTCCTCA 62.193 66.667 5.56 0.00 38.10 3.86
1203 1245 0.318275 GACCAGCGAAGAGGCGATAG 60.318 60.000 0.00 0.00 38.18 2.08
1206 1248 2.989253 TGACCAGCGAAGAGGCGA 60.989 61.111 0.00 0.00 38.18 5.54
1588 1638 1.550065 CGATGCTCAAACTCGACGAT 58.450 50.000 0.00 0.00 34.41 3.73
1605 1658 0.882042 GATAGTACTCGACGCCCCGA 60.882 60.000 0.00 0.00 37.03 5.14
2058 2126 4.332543 TTCTCCAGCCCCTCCCGT 62.333 66.667 0.00 0.00 0.00 5.28
2324 2392 3.792459 GCTTGCTGCTTGATGATTAGCTG 60.792 47.826 0.00 0.00 38.22 4.24
2326 2394 2.543238 GGCTTGCTGCTTGATGATTAGC 60.543 50.000 0.00 0.00 42.39 3.09
2332 2400 1.153823 GCTGGCTTGCTGCTTGATG 60.154 57.895 0.00 0.00 42.39 3.07
2334 2402 3.359523 CGCTGGCTTGCTGCTTGA 61.360 61.111 0.00 0.00 42.39 3.02
2335 2403 3.667282 ACGCTGGCTTGCTGCTTG 61.667 61.111 0.00 0.00 42.39 4.01
2336 2404 3.667282 CACGCTGGCTTGCTGCTT 61.667 61.111 0.00 0.00 42.39 3.91
2367 2435 9.803130 CGCTGATTTAATCACTCAATAATACAG 57.197 33.333 3.20 0.00 35.06 2.74
2368 2436 9.541143 TCGCTGATTTAATCACTCAATAATACA 57.459 29.630 3.20 0.00 35.06 2.29
2467 2535 4.201695 CGTGATACGATAGATACACGGAGG 60.202 50.000 0.00 0.00 46.05 4.30
2617 2688 8.597662 ATCAATCACAAATGGAAAAGAAACAG 57.402 30.769 0.00 0.00 0.00 3.16
2664 2736 2.802816 GGAAAATCCGTCCATGATCGAG 59.197 50.000 10.20 2.74 35.05 4.04
2679 2751 6.017357 GGACAGTACAGAAAAGAACGGAAAAT 60.017 38.462 0.00 0.00 0.00 1.82
2725 2808 2.040178 ACCATGGCTAGGCTACAGTAC 58.960 52.381 18.18 0.00 0.00 2.73
2745 2828 7.100409 TGGACATCTAACACGACATTTGATTA 58.900 34.615 0.00 0.00 0.00 1.75
2754 2837 5.856126 TCATTTTGGACATCTAACACGAC 57.144 39.130 0.00 0.00 0.00 4.34
2760 2843 5.989477 AGGTCGATCATTTTGGACATCTAA 58.011 37.500 0.00 0.00 0.00 2.10
2862 2945 1.065701 CGTCCCGAGAATTCAGACGAT 59.934 52.381 24.11 0.00 45.44 3.73
2876 2959 3.393800 AGAAAATGCTATCATCGTCCCG 58.606 45.455 0.00 0.00 31.27 5.14
3012 3099 1.542915 TGCGCGTACTTTCTCCTACTT 59.457 47.619 8.43 0.00 0.00 2.24
3046 3133 6.642131 ACACGATCAATTTCCACAAGATTTTG 59.358 34.615 0.00 0.00 40.24 2.44
3053 3146 4.339530 TCCAAACACGATCAATTTCCACAA 59.660 37.500 0.00 0.00 0.00 3.33
3089 3182 6.847956 CATGCAATGTTTTTCCTTTGAGAA 57.152 33.333 0.00 0.00 40.20 2.87
3111 3205 4.066646 TGTCTACAAAACAGCACTAGCA 57.933 40.909 0.00 0.00 45.49 3.49
3113 3207 5.106948 CCACATGTCTACAAAACAGCACTAG 60.107 44.000 0.00 0.00 0.00 2.57
3190 3298 4.494350 AACAACATCACTTCTCATGCAC 57.506 40.909 0.00 0.00 0.00 4.57
3226 3334 9.119418 AGGTTTGAAAAACCAAAATAAGAATGG 57.881 29.630 20.82 0.00 42.69 3.16
3231 3339 7.984617 TCAGGAGGTTTGAAAAACCAAAATAAG 59.015 33.333 20.82 6.90 42.69 1.73
3235 3343 5.746990 TCAGGAGGTTTGAAAAACCAAAA 57.253 34.783 20.82 2.64 42.69 2.44
3267 3375 7.358352 CGAACATGCAAATTTTCTAGGTCAAAC 60.358 37.037 0.00 0.00 0.00 2.93
3276 3385 7.763172 TGTTTAACGAACATGCAAATTTTCT 57.237 28.000 0.00 0.00 43.13 2.52



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.