Multiple sequence alignment - TraesCS5A01G338600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G338600 chr5A 100.000 3399 0 0 1 3399 546343792 546347190 0.000000e+00 6277.0
1 TraesCS5A01G338600 chr5A 91.835 1335 103 1 1037 2371 546360329 546361657 0.000000e+00 1857.0
2 TraesCS5A01G338600 chr5A 79.113 1331 236 33 1045 2366 512799376 512800673 0.000000e+00 880.0
3 TraesCS5A01G338600 chr5A 77.011 1231 252 24 1141 2366 545984716 545985920 0.000000e+00 676.0
4 TraesCS5A01G338600 chr5A 84.946 93 13 1 2793 2884 546362224 546362316 3.610000e-15 93.5
5 TraesCS5A01G338600 chr5A 88.312 77 7 2 2657 2732 688954996 688955071 1.300000e-14 91.6
6 TraesCS5A01G338600 chr5D 92.205 2386 137 25 331 2690 430967925 430970287 0.000000e+00 3330.0
7 TraesCS5A01G338600 chr5D 93.928 1334 75 1 1037 2370 430985526 430986853 0.000000e+00 2010.0
8 TraesCS5A01G338600 chr5D 78.865 1339 234 39 1045 2366 407517493 407518799 0.000000e+00 859.0
9 TraesCS5A01G338600 chr5D 90.217 276 25 2 1 275 430967485 430967759 3.220000e-95 359.0
10 TraesCS5A01G338600 chr5D 89.873 79 6 2 2655 2732 550299197 550299274 2.160000e-17 100.0
11 TraesCS5A01G338600 chr5B 91.071 2016 121 20 419 2398 520368954 520370946 0.000000e+00 2671.0
12 TraesCS5A01G338600 chr5B 93.628 1334 85 0 1037 2370 520419360 520420693 0.000000e+00 1993.0
13 TraesCS5A01G338600 chr5B 78.235 1337 246 33 1045 2366 488561076 488562382 0.000000e+00 815.0
14 TraesCS5A01G338600 chr5B 85.423 343 35 6 3055 3393 520409687 520410018 3.250000e-90 342.0
15 TraesCS5A01G338600 chr5B 93.133 233 11 5 2791 3020 520407036 520407266 1.510000e-88 337.0
16 TraesCS5A01G338600 chr7A 92.105 76 4 2 2658 2732 80872501 80872575 4.640000e-19 106.0
17 TraesCS5A01G338600 chr7A 100.000 28 0 0 396 423 66752748 66752775 6.000000e-03 52.8
18 TraesCS5A01G338600 chr6B 89.610 77 6 2 2657 2732 233693296 233693221 2.790000e-16 97.1
19 TraesCS5A01G338600 chr6B 89.474 76 5 3 2658 2732 323193613 323193686 3.610000e-15 93.5
20 TraesCS5A01G338600 chr6B 100.000 28 0 0 395 422 178213365 178213338 6.000000e-03 52.8
21 TraesCS5A01G338600 chr2A 89.474 76 6 2 2658 2732 528167391 528167317 1.000000e-15 95.3
22 TraesCS5A01G338600 chr2A 94.444 36 1 1 392 427 670282490 670282524 2.000000e-03 54.7
23 TraesCS5A01G338600 chr3B 87.654 81 8 2 2653 2732 238828328 238828249 3.610000e-15 93.5
24 TraesCS5A01G338600 chr2B 89.474 76 5 3 2658 2732 798983677 798983750 3.610000e-15 93.5
25 TraesCS5A01G338600 chr4B 85.057 87 9 3 2646 2732 77005261 77005179 6.040000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G338600 chr5A 546343792 546347190 3398 False 6277.00 6277 100.0000 1 3399 1 chr5A.!!$F3 3398
1 TraesCS5A01G338600 chr5A 546360329 546362316 1987 False 975.25 1857 88.3905 1037 2884 2 chr5A.!!$F5 1847
2 TraesCS5A01G338600 chr5A 512799376 512800673 1297 False 880.00 880 79.1130 1045 2366 1 chr5A.!!$F1 1321
3 TraesCS5A01G338600 chr5A 545984716 545985920 1204 False 676.00 676 77.0110 1141 2366 1 chr5A.!!$F2 1225
4 TraesCS5A01G338600 chr5D 430985526 430986853 1327 False 2010.00 2010 93.9280 1037 2370 1 chr5D.!!$F2 1333
5 TraesCS5A01G338600 chr5D 430967485 430970287 2802 False 1844.50 3330 91.2110 1 2690 2 chr5D.!!$F4 2689
6 TraesCS5A01G338600 chr5D 407517493 407518799 1306 False 859.00 859 78.8650 1045 2366 1 chr5D.!!$F1 1321
7 TraesCS5A01G338600 chr5B 520368954 520370946 1992 False 2671.00 2671 91.0710 419 2398 1 chr5B.!!$F2 1979
8 TraesCS5A01G338600 chr5B 520419360 520420693 1333 False 1993.00 1993 93.6280 1037 2370 1 chr5B.!!$F3 1333
9 TraesCS5A01G338600 chr5B 488561076 488562382 1306 False 815.00 815 78.2350 1045 2366 1 chr5B.!!$F1 1321
10 TraesCS5A01G338600 chr5B 520407036 520410018 2982 False 339.50 342 89.2780 2791 3393 2 chr5B.!!$F4 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1162 0.163788 CGCCAGCAAACACTCGTAAG 59.836 55.0 0.0 0.0 0.0 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2773 3123 0.250166 ACTTTTCCAACCGGACCTCG 60.25 55.0 9.46 0.0 42.67 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.151177 ACCCTCCGATATTTTAGTTAATCTACA 57.849 33.333 0.00 0.00 0.00 2.74
63 65 5.796350 ACATGTGTCCTATTTTAAGCGAC 57.204 39.130 0.00 0.00 0.00 5.19
179 181 8.043113 AGAATCAGAGTATCATGCTGTTTTACA 58.957 33.333 0.00 0.00 37.82 2.41
237 239 7.679638 GCAACCTTAATCAATAGCTCACGATTT 60.680 37.037 9.04 0.00 30.94 2.17
249 251 5.858475 AGCTCACGATTTGTCTTTATTTCG 58.142 37.500 0.00 0.00 0.00 3.46
252 254 7.277981 AGCTCACGATTTGTCTTTATTTCGTAT 59.722 33.333 0.00 0.00 37.69 3.06
255 257 6.351000 CACGATTTGTCTTTATTTCGTATCGC 59.649 38.462 0.00 0.00 37.69 4.58
257 259 7.433131 ACGATTTGTCTTTATTTCGTATCGCTA 59.567 33.333 0.00 0.00 37.98 4.26
275 277 7.962964 ATCGCTATAGATCCGAATTGAAAAA 57.037 32.000 3.21 0.00 34.42 1.94
298 300 5.421212 AAAAACACGGTTTAGATACGCAA 57.579 34.783 3.01 0.00 0.00 4.85
299 301 4.394099 AAACACGGTTTAGATACGCAAC 57.606 40.909 0.86 0.00 0.00 4.17
300 302 3.029320 ACACGGTTTAGATACGCAACA 57.971 42.857 0.00 0.00 0.00 3.33
301 303 3.391965 ACACGGTTTAGATACGCAACAA 58.608 40.909 0.00 0.00 0.00 2.83
302 304 3.808726 ACACGGTTTAGATACGCAACAAA 59.191 39.130 0.00 0.00 0.00 2.83
303 305 4.145997 CACGGTTTAGATACGCAACAAAC 58.854 43.478 0.00 0.00 0.00 2.93
304 306 3.187022 ACGGTTTAGATACGCAACAAACC 59.813 43.478 4.78 4.78 42.98 3.27
305 307 3.186817 CGGTTTAGATACGCAACAAACCA 59.813 43.478 13.27 0.00 45.43 3.67
306 308 4.142773 CGGTTTAGATACGCAACAAACCAT 60.143 41.667 13.27 0.00 45.43 3.55
307 309 5.329493 GGTTTAGATACGCAACAAACCATC 58.671 41.667 9.13 0.00 44.83 3.51
308 310 5.123344 GGTTTAGATACGCAACAAACCATCT 59.877 40.000 9.13 0.00 44.83 2.90
309 311 6.314400 GGTTTAGATACGCAACAAACCATCTA 59.686 38.462 9.13 0.00 44.83 1.98
310 312 7.012044 GGTTTAGATACGCAACAAACCATCTAT 59.988 37.037 9.13 0.00 44.83 1.98
311 313 9.037737 GTTTAGATACGCAACAAACCATCTATA 57.962 33.333 0.00 0.00 0.00 1.31
312 314 9.602568 TTTAGATACGCAACAAACCATCTATAA 57.397 29.630 0.00 0.00 0.00 0.98
313 315 7.478520 AGATACGCAACAAACCATCTATAAC 57.521 36.000 0.00 0.00 0.00 1.89
314 316 4.957759 ACGCAACAAACCATCTATAACC 57.042 40.909 0.00 0.00 0.00 2.85
315 317 4.328536 ACGCAACAAACCATCTATAACCA 58.671 39.130 0.00 0.00 0.00 3.67
316 318 4.762765 ACGCAACAAACCATCTATAACCAA 59.237 37.500 0.00 0.00 0.00 3.67
317 319 5.106317 ACGCAACAAACCATCTATAACCAAG 60.106 40.000 0.00 0.00 0.00 3.61
358 509 1.507174 GACGAGGGTGAGAAGGACG 59.493 63.158 0.00 0.00 0.00 4.79
363 514 2.033550 CGAGGGTGAGAAGGACGATAAG 59.966 54.545 0.00 0.00 0.00 1.73
372 523 4.320971 GACGATAAGCGGCGACAT 57.679 55.556 12.98 0.00 46.49 3.06
378 529 2.668556 CGATAAGCGGCGACATAGATGT 60.669 50.000 12.98 0.00 39.11 3.06
384 535 0.786581 GGCGACATAGATGTGATGCG 59.213 55.000 0.00 0.00 41.95 4.73
385 536 1.491670 GCGACATAGATGTGATGCGT 58.508 50.000 0.00 0.00 41.95 5.24
392 543 0.391661 AGATGTGATGCGTGTGGACC 60.392 55.000 0.00 0.00 0.00 4.46
394 545 0.674581 ATGTGATGCGTGTGGACCTG 60.675 55.000 0.00 0.00 0.00 4.00
401 552 1.355210 CGTGTGGACCTGTTGCAAC 59.645 57.895 22.83 22.83 0.00 4.17
415 566 4.025401 CAACGCGCGGGCTCTTTT 62.025 61.111 35.22 14.60 36.88 2.27
423 574 1.291132 GCGGGCTCTTTTGCTAGTAG 58.709 55.000 0.00 0.00 0.00 2.57
430 582 6.929606 CGGGCTCTTTTGCTAGTAGTATTAAT 59.070 38.462 0.00 0.00 0.00 1.40
511 666 0.667993 ATGAATTGGCCGGTTATGCG 59.332 50.000 1.90 0.00 0.00 4.73
597 752 5.475273 ACAATAACAAGTGCGATGAGATG 57.525 39.130 0.00 0.00 0.00 2.90
604 759 3.993234 GCGATGAGATGCACGGCG 61.993 66.667 4.80 4.80 0.00 6.46
648 804 1.051008 AACGTTTTACTCCGGGACCT 58.949 50.000 0.00 0.00 0.00 3.85
679 843 5.063691 TGTGATTTACTAATTGTTACCGCGG 59.936 40.000 26.86 26.86 0.00 6.46
693 857 2.486966 GCGGCAAGATCCAACTGC 59.513 61.111 0.00 0.00 0.00 4.40
712 876 7.254795 CCAACTGCAAATATACAGTAAGCTACC 60.255 40.741 6.43 0.00 46.17 3.18
730 894 3.680786 GCCGCACAAAAGGACCCC 61.681 66.667 0.00 0.00 0.00 4.95
760 924 2.359848 ACCAAATCCATGACATGCATCG 59.640 45.455 10.10 0.00 34.15 3.84
767 948 2.614983 CCATGACATGCATCGTTCATCA 59.385 45.455 10.10 3.35 34.15 3.07
768 949 3.065648 CCATGACATGCATCGTTCATCAA 59.934 43.478 10.10 0.00 34.15 2.57
769 950 3.745332 TGACATGCATCGTTCATCAAC 57.255 42.857 0.00 0.00 0.00 3.18
770 951 3.337358 TGACATGCATCGTTCATCAACT 58.663 40.909 0.00 0.00 0.00 3.16
771 952 3.125658 TGACATGCATCGTTCATCAACTG 59.874 43.478 0.00 0.00 0.00 3.16
772 953 3.337358 ACATGCATCGTTCATCAACTGA 58.663 40.909 0.00 0.00 0.00 3.41
773 954 3.752747 ACATGCATCGTTCATCAACTGAA 59.247 39.130 0.00 0.00 41.61 3.02
781 962 1.896220 TCATCAACTGAACCACTGGC 58.104 50.000 0.00 0.00 0.00 4.85
782 963 1.421268 TCATCAACTGAACCACTGGCT 59.579 47.619 0.00 0.00 0.00 4.75
783 964 2.158623 TCATCAACTGAACCACTGGCTT 60.159 45.455 0.00 0.00 0.00 4.35
790 971 1.149148 GAACCACTGGCTTTCTCGAC 58.851 55.000 0.00 0.00 0.00 4.20
821 1002 1.821753 AGGAGTTCATGTCGACTGAGG 59.178 52.381 17.92 0.00 0.00 3.86
829 1010 1.444553 GTCGACTGAGGCAACGGAG 60.445 63.158 8.70 0.00 46.39 4.63
963 1158 2.856032 CTCGCCAGCAAACACTCG 59.144 61.111 0.00 0.00 0.00 4.18
965 1160 0.666274 CTCGCCAGCAAACACTCGTA 60.666 55.000 0.00 0.00 0.00 3.43
966 1161 0.249531 TCGCCAGCAAACACTCGTAA 60.250 50.000 0.00 0.00 0.00 3.18
967 1162 0.163788 CGCCAGCAAACACTCGTAAG 59.836 55.000 0.00 0.00 0.00 2.34
968 1163 1.226746 GCCAGCAAACACTCGTAAGT 58.773 50.000 0.00 0.00 35.60 2.24
998 1215 1.729517 CACGGTACATCGCATCAACAA 59.270 47.619 0.00 0.00 0.00 2.83
1002 1219 3.364465 CGGTACATCGCATCAACAACAAA 60.364 43.478 0.00 0.00 0.00 2.83
1004 1221 4.381566 GGTACATCGCATCAACAACAAAAC 59.618 41.667 0.00 0.00 0.00 2.43
1006 1223 4.043750 ACATCGCATCAACAACAAAACAG 58.956 39.130 0.00 0.00 0.00 3.16
1011 1228 4.204168 CGCATCAACAACAAAACAGTACAC 59.796 41.667 0.00 0.00 0.00 2.90
1017 1234 4.083565 ACAACAAAACAGTACACCAACCT 58.916 39.130 0.00 0.00 0.00 3.50
1094 1311 3.135056 GAAGCCGAGGTACGCCGAT 62.135 63.158 7.03 0.00 41.07 4.18
1147 1364 1.442184 CGTCCTCGGTGTTCGACAG 60.442 63.158 0.00 0.00 43.74 3.51
1576 1793 1.758514 GAGGGCTGGACATCTCCGA 60.759 63.158 0.00 0.00 39.88 4.55
1622 1845 1.913762 CCACCCTGACCTCTTCCGT 60.914 63.158 0.00 0.00 0.00 4.69
1907 2154 1.406065 CCTCCACCATCCGCATCTCT 61.406 60.000 0.00 0.00 0.00 3.10
1910 2157 0.531532 CCACCATCCGCATCTCTGTC 60.532 60.000 0.00 0.00 0.00 3.51
1961 2208 0.605589 GCTACTTCGGCAACCTGGTT 60.606 55.000 6.18 6.18 0.00 3.67
2033 2280 1.370414 GCACGCAGCACAAACGATT 60.370 52.632 0.00 0.00 44.79 3.34
2148 2395 2.651361 CGGAGCTGAAGGACGTGT 59.349 61.111 0.00 0.00 0.00 4.49
2285 2532 1.380785 CCTGGTGCCGTCCTACCTA 60.381 63.158 0.00 0.00 37.84 3.08
2371 2618 3.455910 TGCTGCTACTCCATGGACTAAAT 59.544 43.478 11.44 0.00 0.00 1.40
2378 2625 6.651225 GCTACTCCATGGACTAAATATGAACC 59.349 42.308 11.44 0.00 0.00 3.62
2509 2827 8.466798 TGTATCGATTGTATCCCTACATATGTG 58.533 37.037 18.81 8.27 37.68 3.21
2510 2828 6.911250 TCGATTGTATCCCTACATATGTGT 57.089 37.500 18.81 0.00 37.68 3.72
2626 2976 3.326836 TTGCACAGACGATTATGGACA 57.673 42.857 0.00 0.00 0.00 4.02
2646 2996 5.710099 GGACAGGTTTTCATTCCATGTTCTA 59.290 40.000 0.00 0.00 0.00 2.10
2651 3001 8.616076 CAGGTTTTCATTCCATGTTCTATCTAC 58.384 37.037 0.00 0.00 0.00 2.59
2652 3002 8.552296 AGGTTTTCATTCCATGTTCTATCTACT 58.448 33.333 0.00 0.00 0.00 2.57
2654 3004 9.383519 GTTTTCATTCCATGTTCTATCTACTCA 57.616 33.333 0.00 0.00 0.00 3.41
2669 3019 4.607239 TCTACTCATTTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
2707 3057 7.520119 CCTTTTTAAGGTTTCAACAAGTGAC 57.480 36.000 0.00 0.00 43.95 3.67
2708 3058 7.320399 CCTTTTTAAGGTTTCAACAAGTGACT 58.680 34.615 0.00 0.00 43.95 3.41
2709 3059 8.463607 CCTTTTTAAGGTTTCAACAAGTGACTA 58.536 33.333 0.00 0.00 43.95 2.59
2716 3066 9.787435 AAGGTTTCAACAAGTGACTATATACAA 57.213 29.630 0.00 0.00 35.39 2.41
2717 3067 9.787435 AGGTTTCAACAAGTGACTATATACAAA 57.213 29.630 0.00 0.00 35.39 2.83
2719 3069 9.543018 GTTTCAACAAGTGACTATATACAAAGC 57.457 33.333 0.00 0.00 35.39 3.51
2723 3073 9.891828 CAACAAGTGACTATATACAAAGCAAAA 57.108 29.630 0.00 0.00 0.00 2.44
2774 3124 4.736126 AAGAAATTAATGGAAAGGGGCG 57.264 40.909 0.00 0.00 0.00 6.13
2775 3125 3.976015 AGAAATTAATGGAAAGGGGCGA 58.024 40.909 0.00 0.00 0.00 5.54
2776 3126 3.954258 AGAAATTAATGGAAAGGGGCGAG 59.046 43.478 0.00 0.00 0.00 5.03
2777 3127 2.364972 ATTAATGGAAAGGGGCGAGG 57.635 50.000 0.00 0.00 0.00 4.63
2780 3130 2.211468 AATGGAAAGGGGCGAGGTCC 62.211 60.000 0.00 0.00 0.00 4.46
2781 3131 4.468689 GGAAAGGGGCGAGGTCCG 62.469 72.222 0.00 0.00 42.21 4.79
2850 3245 2.040813 AGAAGCTTGAATGCTCCAAGGA 59.959 45.455 2.10 0.00 43.24 3.36
2887 3282 0.684535 TCTCTGGCCGTGACATTTCA 59.315 50.000 0.00 0.00 0.00 2.69
2889 3284 1.197721 CTCTGGCCGTGACATTTCAAC 59.802 52.381 0.00 0.00 31.90 3.18
2890 3285 1.202758 TCTGGCCGTGACATTTCAACT 60.203 47.619 0.00 0.00 31.90 3.16
2909 3304 2.738846 ACTGTGAATCTTTGCTGCGTAG 59.261 45.455 0.00 0.00 0.00 3.51
2925 3320 5.662211 TGCGTAGTTTGTAGGTTTTTCTC 57.338 39.130 0.00 0.00 0.00 2.87
2940 3335 3.721087 TTTCTCTGGGGAGGAACATTC 57.279 47.619 0.00 0.00 39.86 2.67
2973 3368 3.316308 GCTCAAATGGTATGGGATGACAC 59.684 47.826 0.00 0.00 0.00 3.67
2988 3383 6.543465 TGGGATGACACTTATAGCAAAGAATG 59.457 38.462 1.05 0.00 0.00 2.67
3047 3442 5.193099 ACAAATATTACTGCCTTCAGGGT 57.807 39.130 0.00 0.00 44.54 4.34
3050 3445 7.354312 ACAAATATTACTGCCTTCAGGGTATT 58.646 34.615 0.00 0.00 44.54 1.89
3052 3447 8.352942 CAAATATTACTGCCTTCAGGGTATTTC 58.647 37.037 0.00 0.00 44.54 2.17
3053 3448 2.808906 ACTGCCTTCAGGGTATTTCC 57.191 50.000 0.00 0.00 44.54 3.13
3075 5860 4.152402 CCAACGTTCAGTCGATTTGATCTT 59.848 41.667 0.00 0.00 34.70 2.40
3084 5869 4.818546 AGTCGATTTGATCTTAGCCAATGG 59.181 41.667 0.00 0.00 0.00 3.16
3090 5875 7.973388 CGATTTGATCTTAGCCAATGGTTTTTA 59.027 33.333 0.00 0.00 0.00 1.52
3097 5882 7.479980 TCTTAGCCAATGGTTTTTATCGAATG 58.520 34.615 0.00 0.00 0.00 2.67
3114 5899 3.124297 CGAATGTTTCTCCTTGAGCAGAC 59.876 47.826 0.00 0.00 0.00 3.51
3118 5903 0.037882 TTCTCCTTGAGCAGACGCAG 60.038 55.000 0.00 0.00 42.27 5.18
3123 5908 1.633852 CTTGAGCAGACGCAGCTTCC 61.634 60.000 0.00 0.00 43.58 3.46
3179 5965 2.990967 CGGCCAAACCACCTGCAT 60.991 61.111 2.24 0.00 39.03 3.96
3180 5966 1.677300 CGGCCAAACCACCTGCATA 60.677 57.895 2.24 0.00 39.03 3.14
3188 5974 2.645838 ACCACCTGCATATGTCATCC 57.354 50.000 4.29 0.00 0.00 3.51
3193 5979 0.516001 CTGCATATGTCATCCGCAGC 59.484 55.000 18.39 5.93 43.09 5.25
3198 5984 0.809636 TATGTCATCCGCAGCCAACG 60.810 55.000 0.00 0.00 0.00 4.10
3210 5996 3.794270 CCAACGGATGGTACTGCG 58.206 61.111 0.00 0.00 44.85 5.18
3230 6016 2.438434 CCGCCAATCTGTCCCACC 60.438 66.667 0.00 0.00 0.00 4.61
3231 6017 2.438434 CGCCAATCTGTCCCACCC 60.438 66.667 0.00 0.00 0.00 4.61
3237 6025 1.903877 AATCTGTCCCACCCTGCTCG 61.904 60.000 0.00 0.00 0.00 5.03
3241 6029 2.525629 TCCCACCCTGCTCGAACA 60.526 61.111 0.00 0.00 0.00 3.18
3245 6033 1.227823 CACCCTGCTCGAACAACCA 60.228 57.895 0.00 0.00 0.00 3.67
3249 6037 0.951040 CCTGCTCGAACAACCACCTC 60.951 60.000 0.00 0.00 0.00 3.85
3260 6048 1.779061 AACCACCTCCGATGTGCCTT 61.779 55.000 0.00 0.00 32.30 4.35
3264 6052 1.194781 ACCTCCGATGTGCCTTCACT 61.195 55.000 0.00 0.00 43.49 3.41
3283 6071 2.039405 CCCAGGCCACCCCTCTAT 60.039 66.667 5.01 0.00 44.09 1.98
3284 6072 1.238938 CCCAGGCCACCCCTCTATA 59.761 63.158 5.01 0.00 44.09 1.31
3285 6073 1.128188 CCCAGGCCACCCCTCTATAC 61.128 65.000 5.01 0.00 44.09 1.47
3286 6074 1.128188 CCAGGCCACCCCTCTATACC 61.128 65.000 5.01 0.00 44.09 2.73
3287 6075 0.104934 CAGGCCACCCCTCTATACCT 60.105 60.000 5.01 0.00 44.09 3.08
3288 6076 0.191314 AGGCCACCCCTCTATACCTC 59.809 60.000 5.01 0.00 41.21 3.85
3289 6077 0.105142 GGCCACCCCTCTATACCTCA 60.105 60.000 0.00 0.00 0.00 3.86
3290 6078 1.049402 GCCACCCCTCTATACCTCAC 58.951 60.000 0.00 0.00 0.00 3.51
3291 6079 1.718280 CCACCCCTCTATACCTCACC 58.282 60.000 0.00 0.00 0.00 4.02
3336 6125 1.603455 CACCCACCGCACCTGAAAT 60.603 57.895 0.00 0.00 0.00 2.17
3338 6127 2.398554 CCCACCGCACCTGAAATCG 61.399 63.158 0.00 0.00 0.00 3.34
3343 6132 0.443869 CCGCACCTGAAATCGTGAAG 59.556 55.000 0.00 0.00 31.36 3.02
3347 6136 1.466167 CACCTGAAATCGTGAAGCCAG 59.534 52.381 0.00 0.00 31.36 4.85
3353 6142 2.086054 AATCGTGAAGCCAGTGACTC 57.914 50.000 0.00 0.00 0.00 3.36
3358 6147 1.446966 GAAGCCAGTGACTCGCCTC 60.447 63.158 0.00 0.00 0.00 4.70
3363 6152 2.282251 AGTGACTCGCCTCCGTGA 60.282 61.111 0.00 0.00 35.54 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.556213 TTAAAGTCGCTTAAAATAGGACACAT 57.444 30.769 0.00 0.00 0.00 3.21
237 239 9.770503 GATCTATAGCGATACGAAATAAAGACA 57.229 33.333 0.00 0.00 0.00 3.41
249 251 8.462143 TTTTCAATTCGGATCTATAGCGATAC 57.538 34.615 0.00 0.00 0.00 2.24
276 278 5.207033 GTTGCGTATCTAAACCGTGTTTTT 58.793 37.500 7.22 0.00 0.00 1.94
279 281 3.391965 TGTTGCGTATCTAAACCGTGTT 58.608 40.909 0.00 0.00 0.00 3.32
280 282 3.029320 TGTTGCGTATCTAAACCGTGT 57.971 42.857 0.00 0.00 0.00 4.49
281 283 4.145997 GTTTGTTGCGTATCTAAACCGTG 58.854 43.478 0.00 0.00 0.00 4.94
282 284 3.187022 GGTTTGTTGCGTATCTAAACCGT 59.813 43.478 9.69 0.00 40.35 4.83
283 285 3.739494 GGTTTGTTGCGTATCTAAACCG 58.261 45.455 9.69 0.00 40.35 4.44
284 286 4.752661 TGGTTTGTTGCGTATCTAAACC 57.247 40.909 15.10 15.10 46.45 3.27
285 287 6.178239 AGATGGTTTGTTGCGTATCTAAAC 57.822 37.500 0.00 0.00 0.00 2.01
286 288 9.602568 TTATAGATGGTTTGTTGCGTATCTAAA 57.397 29.630 0.00 0.00 32.72 1.85
287 289 9.037737 GTTATAGATGGTTTGTTGCGTATCTAA 57.962 33.333 0.00 0.00 32.72 2.10
288 290 7.654520 GGTTATAGATGGTTTGTTGCGTATCTA 59.345 37.037 0.00 0.00 33.28 1.98
289 291 6.482308 GGTTATAGATGGTTTGTTGCGTATCT 59.518 38.462 0.00 0.00 0.00 1.98
290 292 6.259167 TGGTTATAGATGGTTTGTTGCGTATC 59.741 38.462 0.00 0.00 0.00 2.24
291 293 6.116806 TGGTTATAGATGGTTTGTTGCGTAT 58.883 36.000 0.00 0.00 0.00 3.06
292 294 5.489249 TGGTTATAGATGGTTTGTTGCGTA 58.511 37.500 0.00 0.00 0.00 4.42
293 295 4.328536 TGGTTATAGATGGTTTGTTGCGT 58.671 39.130 0.00 0.00 0.00 5.24
294 296 4.955925 TGGTTATAGATGGTTTGTTGCG 57.044 40.909 0.00 0.00 0.00 4.85
295 297 5.102313 GCTTGGTTATAGATGGTTTGTTGC 58.898 41.667 0.00 0.00 0.00 4.17
296 298 6.266168 TGCTTGGTTATAGATGGTTTGTTG 57.734 37.500 0.00 0.00 0.00 3.33
297 299 6.627953 GCATGCTTGGTTATAGATGGTTTGTT 60.628 38.462 11.37 0.00 0.00 2.83
298 300 5.163519 GCATGCTTGGTTATAGATGGTTTGT 60.164 40.000 11.37 0.00 0.00 2.83
299 301 5.163530 TGCATGCTTGGTTATAGATGGTTTG 60.164 40.000 20.33 0.00 0.00 2.93
300 302 4.955450 TGCATGCTTGGTTATAGATGGTTT 59.045 37.500 20.33 0.00 0.00 3.27
301 303 4.535781 TGCATGCTTGGTTATAGATGGTT 58.464 39.130 20.33 0.00 0.00 3.67
302 304 4.169059 TGCATGCTTGGTTATAGATGGT 57.831 40.909 20.33 0.00 0.00 3.55
303 305 5.055642 CATGCATGCTTGGTTATAGATGG 57.944 43.478 22.49 0.00 0.00 3.51
333 484 3.324099 CTCACCCTCGTCGACGGTG 62.324 68.421 35.05 31.33 40.29 4.94
343 494 2.223852 GCTTATCGTCCTTCTCACCCTC 60.224 54.545 0.00 0.00 0.00 4.30
347 498 1.841450 CCGCTTATCGTCCTTCTCAC 58.159 55.000 0.00 0.00 36.19 3.51
358 509 2.663602 CACATCTATGTCGCCGCTTATC 59.336 50.000 0.00 0.00 39.39 1.75
363 514 0.786581 CATCACATCTATGTCGCCGC 59.213 55.000 0.00 0.00 39.39 6.53
368 519 2.541346 CCACACGCATCACATCTATGTC 59.459 50.000 0.00 0.00 39.39 3.06
371 522 2.483714 GGTCCACACGCATCACATCTAT 60.484 50.000 0.00 0.00 0.00 1.98
372 523 1.134818 GGTCCACACGCATCACATCTA 60.135 52.381 0.00 0.00 0.00 1.98
378 529 0.884259 CAACAGGTCCACACGCATCA 60.884 55.000 0.00 0.00 0.00 3.07
384 535 1.355210 CGTTGCAACAGGTCCACAC 59.645 57.895 28.01 0.00 0.00 3.82
385 536 2.477176 GCGTTGCAACAGGTCCACA 61.477 57.895 28.01 0.00 0.00 4.17
466 621 7.989170 TCGGGAGTATATATGTATGTATGACGT 59.011 37.037 0.00 0.00 0.00 4.34
511 666 1.069906 GCACACACATTGACGTCTTCC 60.070 52.381 17.92 0.00 0.00 3.46
604 759 3.371087 CTCTTTAGCGAGCTTCCCC 57.629 57.895 1.86 0.00 0.00 4.81
648 804 7.956420 AACAATTAGTAAATCACAGTGTCGA 57.044 32.000 0.00 0.00 0.00 4.20
679 843 6.135290 TGTATATTTGCAGTTGGATCTTGC 57.865 37.500 0.00 0.00 0.00 4.01
693 857 4.384846 CGGCGGTAGCTTACTGTATATTTG 59.615 45.833 0.00 0.00 44.37 2.32
712 876 4.038080 GGGTCCTTTTGTGCGGCG 62.038 66.667 0.51 0.51 0.00 6.46
730 894 3.310774 GTCATGGATTTGGTCAGACGATG 59.689 47.826 0.00 0.00 0.00 3.84
767 948 2.576615 GAGAAAGCCAGTGGTTCAGTT 58.423 47.619 11.74 0.00 0.00 3.16
768 949 1.541233 CGAGAAAGCCAGTGGTTCAGT 60.541 52.381 11.74 0.00 0.00 3.41
769 950 1.151668 CGAGAAAGCCAGTGGTTCAG 58.848 55.000 11.74 2.77 0.00 3.02
770 951 0.756294 TCGAGAAAGCCAGTGGTTCA 59.244 50.000 11.74 0.00 0.00 3.18
771 952 1.149148 GTCGAGAAAGCCAGTGGTTC 58.851 55.000 11.74 7.72 0.00 3.62
772 953 0.250338 GGTCGAGAAAGCCAGTGGTT 60.250 55.000 11.74 0.44 0.00 3.67
773 954 1.371558 GGTCGAGAAAGCCAGTGGT 59.628 57.895 11.74 0.00 0.00 4.16
774 955 1.376037 GGGTCGAGAAAGCCAGTGG 60.376 63.158 4.20 4.20 36.78 4.00
775 956 0.250295 TTGGGTCGAGAAAGCCAGTG 60.250 55.000 0.00 0.00 46.76 3.66
776 957 0.250338 GTTGGGTCGAGAAAGCCAGT 60.250 55.000 0.00 0.00 46.76 4.00
777 958 0.250295 TGTTGGGTCGAGAAAGCCAG 60.250 55.000 0.00 0.00 46.76 4.85
778 959 0.250295 CTGTTGGGTCGAGAAAGCCA 60.250 55.000 0.00 0.00 44.78 4.75
779 960 0.034896 TCTGTTGGGTCGAGAAAGCC 59.965 55.000 0.00 0.00 37.32 4.35
780 961 1.149148 GTCTGTTGGGTCGAGAAAGC 58.851 55.000 0.00 0.00 0.00 3.51
781 962 2.821991 AGTCTGTTGGGTCGAGAAAG 57.178 50.000 0.00 0.00 0.00 2.62
782 963 2.561419 CCTAGTCTGTTGGGTCGAGAAA 59.439 50.000 0.00 0.00 0.00 2.52
783 964 2.168496 CCTAGTCTGTTGGGTCGAGAA 58.832 52.381 0.00 0.00 0.00 2.87
790 971 3.261897 ACATGAACTCCTAGTCTGTTGGG 59.738 47.826 0.00 0.00 0.00 4.12
821 1002 2.028484 TGGTCGTGTCTCCGTTGC 59.972 61.111 0.00 0.00 0.00 4.17
829 1010 2.653087 GGGGGTAGGTGGTCGTGTC 61.653 68.421 0.00 0.00 0.00 3.67
959 1154 1.875514 TGAGTACGTGCACTTACGAGT 59.124 47.619 23.11 11.95 46.46 4.18
960 1155 2.240040 GTGAGTACGTGCACTTACGAG 58.760 52.381 23.11 6.72 46.46 4.18
961 1156 2.320805 GTGAGTACGTGCACTTACGA 57.679 50.000 23.11 13.84 46.46 3.43
985 1202 4.043750 ACTGTTTTGTTGTTGATGCGATG 58.956 39.130 0.00 0.00 0.00 3.84
998 1215 5.503002 AGTAAGGTTGGTGTACTGTTTTGT 58.497 37.500 0.00 0.00 0.00 2.83
1002 1219 4.457466 CCAAGTAAGGTTGGTGTACTGTT 58.543 43.478 0.00 0.00 41.96 3.16
1004 1221 3.408634 CCCAAGTAAGGTTGGTGTACTG 58.591 50.000 2.12 0.00 44.98 2.74
1006 1223 2.372837 TCCCCAAGTAAGGTTGGTGTAC 59.627 50.000 2.12 0.00 44.98 2.90
1011 1228 2.668144 TGTTCCCCAAGTAAGGTTGG 57.332 50.000 0.00 0.00 45.88 3.77
1017 1234 2.094078 CCGTACGATGTTCCCCAAGTAA 60.094 50.000 18.76 0.00 0.00 2.24
1235 1452 1.580942 GCGGTACACGGACAGTACA 59.419 57.895 0.00 0.00 42.73 2.90
1238 1455 2.599578 AGGCGGTACACGGACAGT 60.600 61.111 0.00 0.00 44.51 3.55
2106 2353 3.330720 CTCCAACCCCTCCCGCTT 61.331 66.667 0.00 0.00 0.00 4.68
2118 2365 2.970639 CTCCGCCGTCTTCTCCAA 59.029 61.111 0.00 0.00 0.00 3.53
2148 2395 3.636231 CTCCAGGTCCGGGCACAA 61.636 66.667 9.07 0.00 0.00 3.33
2171 2418 2.978824 GGGAACGTCAGCCAGCTA 59.021 61.111 0.00 0.00 0.00 3.32
2316 2563 0.976641 TCGAGGTTGTGCTGGAAGAT 59.023 50.000 0.00 0.00 34.07 2.40
2458 2743 7.442969 CACGGAGATGAAGAATACTCTACTACT 59.557 40.741 0.00 0.00 0.00 2.57
2462 2747 6.380095 ACACGGAGATGAAGAATACTCTAC 57.620 41.667 0.00 0.00 0.00 2.59
2464 2749 6.072948 CGATACACGGAGATGAAGAATACTCT 60.073 42.308 0.00 0.00 38.46 3.24
2465 2750 6.073167 TCGATACACGGAGATGAAGAATACTC 60.073 42.308 0.00 0.00 42.82 2.59
2466 2751 5.763698 TCGATACACGGAGATGAAGAATACT 59.236 40.000 0.00 0.00 42.82 2.12
2467 2752 5.998553 TCGATACACGGAGATGAAGAATAC 58.001 41.667 0.00 0.00 42.82 1.89
2468 2753 6.819397 ATCGATACACGGAGATGAAGAATA 57.181 37.500 0.00 0.00 42.82 1.75
2509 2827 8.592155 CGTATTACATGCATGTACACCATATAC 58.408 37.037 33.74 30.27 42.48 1.47
2510 2828 8.308207 ACGTATTACATGCATGTACACCATATA 58.692 33.333 33.74 24.37 42.48 0.86
2596 2934 2.729360 TCGTCTGTGCAAACATTAGTCG 59.271 45.455 0.00 0.00 0.00 4.18
2599 2937 6.037062 TCCATAATCGTCTGTGCAAACATTAG 59.963 38.462 0.00 0.00 0.00 1.73
2601 2939 4.699735 TCCATAATCGTCTGTGCAAACATT 59.300 37.500 0.00 0.00 0.00 2.71
2646 2996 4.805744 ACGGAGGGAGTAAATGAGTAGAT 58.194 43.478 0.00 0.00 0.00 1.98
2651 3001 2.500098 TGGAACGGAGGGAGTAAATGAG 59.500 50.000 0.00 0.00 0.00 2.90
2652 3002 2.542550 TGGAACGGAGGGAGTAAATGA 58.457 47.619 0.00 0.00 0.00 2.57
2654 3004 5.906772 ATTATGGAACGGAGGGAGTAAAT 57.093 39.130 0.00 0.00 0.00 1.40
2655 3005 8.495160 TTATATTATGGAACGGAGGGAGTAAA 57.505 34.615 0.00 0.00 0.00 2.01
2691 3041 9.787435 TTTGTATATAGTCACTTGTTGAAACCT 57.213 29.630 0.00 0.00 35.39 3.50
2695 3045 8.840833 TGCTTTGTATATAGTCACTTGTTGAA 57.159 30.769 0.00 0.00 35.39 2.69
2696 3046 8.840833 TTGCTTTGTATATAGTCACTTGTTGA 57.159 30.769 0.00 0.00 0.00 3.18
2697 3047 9.891828 TTTTGCTTTGTATATAGTCACTTGTTG 57.108 29.630 0.00 0.00 0.00 3.33
2750 3100 6.609616 TCGCCCCTTTCCATTAATTTCTTAAT 59.390 34.615 0.00 0.00 37.92 1.40
2751 3101 5.952947 TCGCCCCTTTCCATTAATTTCTTAA 59.047 36.000 0.00 0.00 0.00 1.85
2752 3102 5.511363 TCGCCCCTTTCCATTAATTTCTTA 58.489 37.500 0.00 0.00 0.00 2.10
2753 3103 4.349365 TCGCCCCTTTCCATTAATTTCTT 58.651 39.130 0.00 0.00 0.00 2.52
2754 3104 3.954258 CTCGCCCCTTTCCATTAATTTCT 59.046 43.478 0.00 0.00 0.00 2.52
2755 3105 3.068165 CCTCGCCCCTTTCCATTAATTTC 59.932 47.826 0.00 0.00 0.00 2.17
2757 3107 2.024369 ACCTCGCCCCTTTCCATTAATT 60.024 45.455 0.00 0.00 0.00 1.40
2759 3109 0.996583 ACCTCGCCCCTTTCCATTAA 59.003 50.000 0.00 0.00 0.00 1.40
2760 3110 0.544697 GACCTCGCCCCTTTCCATTA 59.455 55.000 0.00 0.00 0.00 1.90
2762 3112 2.680370 GGACCTCGCCCCTTTCCAT 61.680 63.158 0.00 0.00 0.00 3.41
2763 3113 3.327404 GGACCTCGCCCCTTTCCA 61.327 66.667 0.00 0.00 0.00 3.53
2764 3114 4.468689 CGGACCTCGCCCCTTTCC 62.469 72.222 0.00 0.00 0.00 3.13
2765 3115 4.468689 CCGGACCTCGCCCCTTTC 62.469 72.222 0.00 0.00 37.59 2.62
2771 3121 3.540367 TTTCCAACCGGACCTCGCC 62.540 63.158 9.46 0.00 42.67 5.54
2772 3122 1.574702 CTTTTCCAACCGGACCTCGC 61.575 60.000 9.46 0.00 42.67 5.03
2773 3123 0.250166 ACTTTTCCAACCGGACCTCG 60.250 55.000 9.46 0.00 42.67 4.63
2774 3124 2.038164 ACTACTTTTCCAACCGGACCTC 59.962 50.000 9.46 0.00 42.67 3.85
2775 3125 2.052468 ACTACTTTTCCAACCGGACCT 58.948 47.619 9.46 0.00 42.67 3.85
2776 3126 2.556144 ACTACTTTTCCAACCGGACC 57.444 50.000 9.46 0.00 42.67 4.46
2777 3127 6.429078 AGAAAATACTACTTTTCCAACCGGAC 59.571 38.462 9.46 0.00 43.17 4.79
2887 3282 1.949525 ACGCAGCAAAGATTCACAGTT 59.050 42.857 0.00 0.00 0.00 3.16
2889 3284 2.738846 ACTACGCAGCAAAGATTCACAG 59.261 45.455 0.00 0.00 0.00 3.66
2890 3285 2.766313 ACTACGCAGCAAAGATTCACA 58.234 42.857 0.00 0.00 0.00 3.58
2909 3304 4.466827 TCCCCAGAGAAAAACCTACAAAC 58.533 43.478 0.00 0.00 0.00 2.93
2925 3320 2.108168 TCTACGAATGTTCCTCCCCAG 58.892 52.381 0.00 0.00 0.00 4.45
2940 3335 2.930040 ACCATTTGAGCGACAATCTACG 59.070 45.455 0.00 0.00 38.36 3.51
2951 3346 3.316308 GTGTCATCCCATACCATTTGAGC 59.684 47.826 0.00 0.00 0.00 4.26
3030 3425 5.430417 TGGAAATACCCTGAAGGCAGTAATA 59.570 40.000 0.00 0.00 40.63 0.98
3033 3428 3.186283 TGGAAATACCCTGAAGGCAGTA 58.814 45.455 0.00 0.00 40.63 2.74
3034 3429 1.992557 TGGAAATACCCTGAAGGCAGT 59.007 47.619 0.00 0.00 40.63 4.40
3035 3430 2.755103 GTTGGAAATACCCTGAAGGCAG 59.245 50.000 0.00 0.00 40.58 4.85
3041 3436 3.071892 ACTGAACGTTGGAAATACCCTGA 59.928 43.478 5.00 0.00 38.00 3.86
3042 3437 3.408634 ACTGAACGTTGGAAATACCCTG 58.591 45.455 5.00 0.00 38.00 4.45
3047 3442 5.697178 TCAAATCGACTGAACGTTGGAAATA 59.303 36.000 5.00 0.00 34.70 1.40
3050 3445 3.459145 TCAAATCGACTGAACGTTGGAA 58.541 40.909 5.00 0.00 34.70 3.53
3052 3447 3.679980 AGATCAAATCGACTGAACGTTGG 59.320 43.478 5.00 0.23 34.70 3.77
3053 3448 4.910746 AGATCAAATCGACTGAACGTTG 57.089 40.909 5.00 0.00 34.70 4.10
3075 5860 6.767524 ACATTCGATAAAAACCATTGGCTA 57.232 33.333 1.54 0.00 0.00 3.93
3084 5869 7.271438 GCTCAAGGAGAAACATTCGATAAAAAC 59.729 37.037 0.00 0.00 34.02 2.43
3090 5875 3.937706 CTGCTCAAGGAGAAACATTCGAT 59.062 43.478 0.00 0.00 35.31 3.59
3097 5882 0.793250 GCGTCTGCTCAAGGAGAAAC 59.207 55.000 2.55 0.00 44.07 2.78
3114 5899 0.389948 ACGTTAGGAAGGAAGCTGCG 60.390 55.000 0.00 0.00 0.00 5.18
3118 5903 1.732809 GAGCAACGTTAGGAAGGAAGC 59.267 52.381 0.00 0.00 0.00 3.86
3123 5908 2.009774 CATGGGAGCAACGTTAGGAAG 58.990 52.381 0.00 0.00 0.00 3.46
3162 5947 1.037030 ATATGCAGGTGGTTTGGCCG 61.037 55.000 0.00 0.00 41.21 6.13
3173 5959 1.154197 CTGCGGATGACATATGCAGG 58.846 55.000 23.96 11.98 46.97 4.85
3178 5964 1.597742 GTTGGCTGCGGATGACATAT 58.402 50.000 0.00 0.00 0.00 1.78
3179 5965 0.809636 CGTTGGCTGCGGATGACATA 60.810 55.000 0.00 0.00 0.00 2.29
3180 5966 2.108514 CGTTGGCTGCGGATGACAT 61.109 57.895 0.00 0.00 0.00 3.06
3210 5996 3.134127 GGGACAGATTGGCGGCAC 61.134 66.667 12.92 0.00 0.00 5.01
3224 6010 2.144078 TTGTTCGAGCAGGGTGGGA 61.144 57.895 1.23 0.00 0.00 4.37
3230 6016 0.951040 GAGGTGGTTGTTCGAGCAGG 60.951 60.000 1.23 0.00 0.00 4.85
3231 6017 0.951040 GGAGGTGGTTGTTCGAGCAG 60.951 60.000 1.23 0.00 0.00 4.24
3237 6025 1.156736 CACATCGGAGGTGGTTGTTC 58.843 55.000 14.60 0.00 32.65 3.18
3241 6029 1.779061 AAGGCACATCGGAGGTGGTT 61.779 55.000 22.46 0.00 36.76 3.67
3245 6033 1.296715 GTGAAGGCACATCGGAGGT 59.703 57.895 0.00 0.00 44.51 3.85
3272 6060 1.062428 TGGTGAGGTATAGAGGGGTGG 60.062 57.143 0.00 0.00 0.00 4.61
3278 6066 2.294791 CGAAGCCTGGTGAGGTATAGAG 59.705 54.545 0.00 0.00 42.15 2.43
3279 6067 2.307768 CGAAGCCTGGTGAGGTATAGA 58.692 52.381 0.00 0.00 42.15 1.98
3280 6068 2.032620 ACGAAGCCTGGTGAGGTATAG 58.967 52.381 0.00 0.00 42.15 1.31
3281 6069 2.029623 GACGAAGCCTGGTGAGGTATA 58.970 52.381 0.00 0.00 42.15 1.47
3282 6070 0.824759 GACGAAGCCTGGTGAGGTAT 59.175 55.000 0.00 0.00 42.15 2.73
3283 6071 1.592400 CGACGAAGCCTGGTGAGGTA 61.592 60.000 0.00 0.00 42.15 3.08
3284 6072 2.932234 CGACGAAGCCTGGTGAGGT 61.932 63.158 0.00 0.00 42.15 3.85
3285 6073 2.125912 CGACGAAGCCTGGTGAGG 60.126 66.667 0.00 0.00 43.19 3.86
3286 6074 2.811317 GCGACGAAGCCTGGTGAG 60.811 66.667 0.00 0.00 0.00 3.51
3336 6125 1.285950 CGAGTCACTGGCTTCACGA 59.714 57.895 0.00 0.00 0.00 4.35
3338 6127 2.029844 GGCGAGTCACTGGCTTCAC 61.030 63.158 11.99 0.00 35.57 3.18
3343 6132 4.803426 CGGAGGCGAGTCACTGGC 62.803 72.222 2.57 2.57 34.50 4.85
3347 6136 2.126424 GTCACGGAGGCGAGTCAC 60.126 66.667 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.