Multiple sequence alignment - TraesCS5A01G338100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G338100 chr5A 100.000 3578 0 0 1 3578 546204973 546208550 0.000000e+00 6608.0
1 TraesCS5A01G338100 chr5A 82.038 1865 284 30 688 2531 546686433 546684599 0.000000e+00 1541.0
2 TraesCS5A01G338100 chr5A 81.034 174 27 3 2705 2873 615324610 615324438 2.240000e-27 134.0
3 TraesCS5A01G338100 chr5A 79.769 173 33 2 2705 2876 2094453 2094282 1.350000e-24 124.0
4 TraesCS5A01G338100 chr5A 97.368 38 0 1 3474 3510 546207746 546207783 2.980000e-06 63.9
5 TraesCS5A01G338100 chr5D 91.939 2233 150 16 560 2769 430580740 430582965 0.000000e+00 3099.0
6 TraesCS5A01G338100 chr5D 83.004 1265 195 13 1283 2534 431563400 431562143 0.000000e+00 1127.0
7 TraesCS5A01G338100 chr5D 81.229 1172 187 22 684 1836 495065342 495066499 0.000000e+00 915.0
8 TraesCS5A01G338100 chr5D 83.209 536 66 14 1 518 430580134 430580663 1.500000e-128 470.0
9 TraesCS5A01G338100 chr5D 79.885 174 31 3 2705 2876 236493169 236492998 1.350000e-24 124.0
10 TraesCS5A01G338100 chr5B 91.753 1261 100 1 1243 2503 520111311 520112567 0.000000e+00 1749.0
11 TraesCS5A01G338100 chr5B 91.172 657 57 1 560 1215 520110588 520111244 0.000000e+00 891.0
12 TraesCS5A01G338100 chr5B 90.719 668 61 1 1529 2196 520119160 520119826 0.000000e+00 889.0
13 TraesCS5A01G338100 chr5B 80.617 1166 200 17 684 1836 611518132 611519284 0.000000e+00 878.0
14 TraesCS5A01G338100 chr5B 89.939 656 50 6 879 1533 520114558 520115198 0.000000e+00 832.0
15 TraesCS5A01G338100 chr5B 82.542 653 96 13 572 1215 521140131 521139488 3.120000e-155 558.0
16 TraesCS5A01G338100 chr5B 83.871 558 74 10 1 552 520109987 520110534 5.300000e-143 518.0
17 TraesCS5A01G338100 chr4A 81.250 1984 295 38 671 2596 705436130 705438094 0.000000e+00 1531.0
18 TraesCS5A01G338100 chr4A 81.099 1947 297 32 690 2596 705431845 705429930 0.000000e+00 1491.0
19 TraesCS5A01G338100 chr7D 81.885 1358 196 27 1273 2596 22544846 22546187 0.000000e+00 1099.0
20 TraesCS5A01G338100 chr7D 82.646 582 91 6 671 1246 22544031 22544608 1.150000e-139 507.0
21 TraesCS5A01G338100 chr1A 87.525 497 32 2 2982 3448 558321895 558321399 6.750000e-152 547.0
22 TraesCS5A01G338100 chr1B 84.263 502 41 23 2982 3450 642792441 642791945 4.210000e-124 455.0
23 TraesCS5A01G338100 chr1B 84.731 334 27 1 2982 3291 642803005 642802672 2.680000e-81 313.0
24 TraesCS5A01G338100 chr1D 84.149 511 31 21 2982 3450 465979301 465978799 1.960000e-122 449.0
25 TraesCS5A01G338100 chr1D 85.833 120 15 1 2694 2813 195170219 195170336 3.750000e-25 126.0
26 TraesCS5A01G338100 chr3B 82.353 170 25 3 2705 2873 389795551 389795716 3.720000e-30 143.0
27 TraesCS5A01G338100 chr3B 78.161 174 34 4 2702 2873 708500000 708500171 1.360000e-19 108.0
28 TraesCS5A01G338100 chr2B 81.081 185 30 4 2691 2873 212937888 212938069 3.720000e-30 143.0
29 TraesCS5A01G338100 chr6B 82.734 139 24 0 2705 2843 720795013 720794875 1.350000e-24 124.0
30 TraesCS5A01G338100 chr3D 79.641 167 32 2 2705 2870 295560111 295560276 6.280000e-23 119.0
31 TraesCS5A01G338100 chr2A 86.735 98 13 0 171 268 644407351 644407254 3.780000e-20 110.0
32 TraesCS5A01G338100 chr2A 88.571 70 4 2 3508 3577 723504575 723504510 8.230000e-12 82.4
33 TraesCS5A01G338100 chr2A 88.571 70 4 2 3508 3577 723507491 723507426 8.230000e-12 82.4
34 TraesCS5A01G338100 chr2A 88.571 70 4 2 3508 3577 723510410 723510345 8.230000e-12 82.4
35 TraesCS5A01G338100 chr3A 87.805 82 5 4 18 97 696279745 696279823 1.370000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G338100 chr5A 546204973 546208550 3577 False 3335.95 6608 98.6840 1 3578 2 chr5A.!!$F1 3577
1 TraesCS5A01G338100 chr5A 546684599 546686433 1834 True 1541.00 1541 82.0380 688 2531 1 chr5A.!!$R2 1843
2 TraesCS5A01G338100 chr5D 430580134 430582965 2831 False 1784.50 3099 87.5740 1 2769 2 chr5D.!!$F2 2768
3 TraesCS5A01G338100 chr5D 431562143 431563400 1257 True 1127.00 1127 83.0040 1283 2534 1 chr5D.!!$R2 1251
4 TraesCS5A01G338100 chr5D 495065342 495066499 1157 False 915.00 915 81.2290 684 1836 1 chr5D.!!$F1 1152
5 TraesCS5A01G338100 chr5B 520109987 520119826 9839 False 975.80 1749 89.4908 1 2503 5 chr5B.!!$F2 2502
6 TraesCS5A01G338100 chr5B 611518132 611519284 1152 False 878.00 878 80.6170 684 1836 1 chr5B.!!$F1 1152
7 TraesCS5A01G338100 chr5B 521139488 521140131 643 True 558.00 558 82.5420 572 1215 1 chr5B.!!$R1 643
8 TraesCS5A01G338100 chr4A 705436130 705438094 1964 False 1531.00 1531 81.2500 671 2596 1 chr4A.!!$F1 1925
9 TraesCS5A01G338100 chr4A 705429930 705431845 1915 True 1491.00 1491 81.0990 690 2596 1 chr4A.!!$R1 1906
10 TraesCS5A01G338100 chr7D 22544031 22546187 2156 False 803.00 1099 82.2655 671 2596 2 chr7D.!!$F1 1925
11 TraesCS5A01G338100 chr1D 465978799 465979301 502 True 449.00 449 84.1490 2982 3450 1 chr1D.!!$R1 468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 1013 0.179081 GCGGGATGAGGGTGTCTTAC 60.179 60.0 0.00 0.00 0.00 2.34 F
1045 1134 0.109873 CTCTGAGGTTAACGACGCGT 60.110 55.0 13.85 13.85 43.97 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2436 2839 0.452184 CGACGACTGGATACTGCTGT 59.548 55.0 0.66 0.66 39.52 4.40 R
2836 3354 0.675083 CAATGCCACACAAGCAAGGA 59.325 50.0 0.00 0.00 44.83 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.214845 GGGGCAGCAGTAGCATGC 61.215 66.667 10.51 10.51 46.88 4.06
32 33 3.457263 TAGCATGCCGGTGAGCGA 61.457 61.111 15.66 0.00 34.65 4.93
33 34 2.796193 TAGCATGCCGGTGAGCGAT 61.796 57.895 15.66 0.00 34.65 4.58
42 43 1.596934 GGTGAGCGATGGTTGAGGA 59.403 57.895 0.00 0.00 0.00 3.71
43 44 0.460987 GGTGAGCGATGGTTGAGGAG 60.461 60.000 0.00 0.00 0.00 3.69
52 53 2.301738 GGTTGAGGAGAGGGTGGGG 61.302 68.421 0.00 0.00 0.00 4.96
155 156 2.434774 GAAGCCGTGGGGAGGTTT 59.565 61.111 0.00 0.00 34.85 3.27
160 161 0.255033 GCCGTGGGGAGGTTTAAGAT 59.745 55.000 0.00 0.00 34.06 2.40
161 162 1.487558 GCCGTGGGGAGGTTTAAGATA 59.512 52.381 0.00 0.00 34.06 1.98
188 189 1.095600 GGTTGAAGAAAGGATCCGGC 58.904 55.000 5.98 0.00 0.00 6.13
192 193 1.066143 TGAAGAAAGGATCCGGCTGTC 60.066 52.381 5.98 3.56 0.00 3.51
208 209 1.262950 CTGTCCGTTTTGCATTCGACA 59.737 47.619 7.15 5.25 0.00 4.35
211 212 1.059657 CCGTTTTGCATTCGACAGCG 61.060 55.000 7.15 0.00 39.35 5.18
222 223 0.606096 TCGACAGCGGGAAAGAATCA 59.394 50.000 0.00 0.00 38.28 2.57
225 226 2.427506 GACAGCGGGAAAGAATCAACT 58.572 47.619 0.00 0.00 0.00 3.16
268 276 1.183549 ACTTACACCTAGCCACTCCG 58.816 55.000 0.00 0.00 0.00 4.63
293 301 8.687301 CGTGTACCAAAATTTATGAAAGTTCAC 58.313 33.333 0.00 0.00 40.49 3.18
295 303 9.959749 TGTACCAAAATTTATGAAAGTTCACTC 57.040 29.630 0.00 0.00 40.49 3.51
347 355 3.674997 TCGCTAGAGTTTGGCTGAAATT 58.325 40.909 0.00 0.00 0.00 1.82
348 356 3.436704 TCGCTAGAGTTTGGCTGAAATTG 59.563 43.478 0.00 0.00 0.00 2.32
355 363 5.539955 AGAGTTTGGCTGAAATTGTACCAAT 59.460 36.000 0.00 0.00 39.96 3.16
367 375 9.658799 TGAAATTGTACCAATGTTTGAGAAAAA 57.341 25.926 0.00 0.00 0.00 1.94
409 418 8.475639 TCTACCTAAGTTTAGCTCGAATTCATT 58.524 33.333 6.22 0.00 0.00 2.57
470 492 9.889128 ATATATTTTGGCTGCTACAAACAATTT 57.111 25.926 0.00 0.00 37.53 1.82
533 563 0.524862 TGACCTACTTTCGTCTCCGC 59.475 55.000 0.00 0.00 0.00 5.54
536 566 1.226603 CTACTTTCGTCTCCGCCCG 60.227 63.158 0.00 0.00 0.00 6.13
543 573 4.208686 GTCTCCGCCCGCTACTGG 62.209 72.222 0.00 0.00 0.00 4.00
545 575 3.771160 CTCCGCCCGCTACTGGTT 61.771 66.667 0.00 0.00 0.00 3.67
552 582 0.742505 CCCGCTACTGGTTGATACGA 59.257 55.000 0.00 0.00 0.00 3.43
553 583 1.340248 CCCGCTACTGGTTGATACGAT 59.660 52.381 0.00 0.00 0.00 3.73
554 584 2.223971 CCCGCTACTGGTTGATACGATT 60.224 50.000 0.00 0.00 0.00 3.34
556 586 4.500205 CCCGCTACTGGTTGATACGATTAA 60.500 45.833 0.00 0.00 0.00 1.40
568 644 8.842280 GGTTGATACGATTAATATTTTGGGACA 58.158 33.333 0.00 0.00 0.00 4.02
604 680 6.308015 TGGTGCATAGTGAATTAACTAGGT 57.692 37.500 14.60 0.00 36.91 3.08
786 874 1.542108 GCTAATCCAAGAGCTCGCCAT 60.542 52.381 8.37 0.00 35.73 4.40
823 911 0.469494 TGCTGTCTTGCCAGAACTCA 59.531 50.000 0.00 0.00 34.23 3.41
845 933 4.357947 TCGACACGCCTCTGCACC 62.358 66.667 0.00 0.00 37.32 5.01
846 934 4.363990 CGACACGCCTCTGCACCT 62.364 66.667 0.00 0.00 37.32 4.00
915 1003 4.899239 GCGGGACTGCGGGATGAG 62.899 72.222 0.00 0.00 0.00 2.90
918 1006 3.083997 GGACTGCGGGATGAGGGT 61.084 66.667 0.00 0.00 0.00 4.34
919 1007 2.187946 GACTGCGGGATGAGGGTG 59.812 66.667 0.00 0.00 0.00 4.61
920 1008 2.607750 ACTGCGGGATGAGGGTGT 60.608 61.111 0.00 0.00 0.00 4.16
922 1010 2.284625 TGCGGGATGAGGGTGTCT 60.285 61.111 0.00 0.00 0.00 3.41
924 1012 0.616395 TGCGGGATGAGGGTGTCTTA 60.616 55.000 0.00 0.00 0.00 2.10
925 1013 0.179081 GCGGGATGAGGGTGTCTTAC 60.179 60.000 0.00 0.00 0.00 2.34
1045 1134 0.109873 CTCTGAGGTTAACGACGCGT 60.110 55.000 13.85 13.85 43.97 6.01
1046 1135 0.110056 TCTGAGGTTAACGACGCGTC 60.110 55.000 28.96 28.96 39.99 5.19
1215 1306 0.316841 GCTAGCTCCTCCTTGATCCG 59.683 60.000 7.70 0.00 0.00 4.18
1263 1396 3.391506 TGTCAATCCTCGGCTGATATG 57.608 47.619 0.00 0.00 0.00 1.78
1268 1613 6.210584 TGTCAATCCTCGGCTGATATGTATTA 59.789 38.462 0.00 0.00 0.00 0.98
1269 1614 6.531948 GTCAATCCTCGGCTGATATGTATTAC 59.468 42.308 0.00 0.00 0.00 1.89
1270 1615 5.599999 ATCCTCGGCTGATATGTATTACC 57.400 43.478 0.00 0.00 0.00 2.85
1271 1616 4.412843 TCCTCGGCTGATATGTATTACCA 58.587 43.478 0.00 0.00 0.00 3.25
1290 1635 3.826157 ACCAACCATCGATGTGAACATTT 59.174 39.130 23.27 3.41 36.57 2.32
1392 1737 1.578618 GCTGCATTTCGCTTCGTCG 60.579 57.895 0.00 0.00 43.06 5.12
1944 2301 0.938713 AGGCGATAGAGAAGACGTCG 59.061 55.000 10.46 0.00 35.52 5.12
2100 2491 3.314635 GCTTCATTATCCTGGACAGCTTG 59.685 47.826 0.00 0.00 0.00 4.01
2534 2938 4.072131 GCTGGTTTTGTCATAGTCTGGAA 58.928 43.478 0.00 0.00 0.00 3.53
2537 2941 5.441500 TGGTTTTGTCATAGTCTGGAAACA 58.558 37.500 0.00 0.00 39.59 2.83
2616 3132 3.855689 ATCTTTTCAATCAACAGGGCG 57.144 42.857 0.00 0.00 0.00 6.13
2642 3158 1.690283 GCCCTGGCCCCATTTTCAT 60.690 57.895 0.00 0.00 34.56 2.57
2674 3190 3.914364 ACGAAACGAAACCGTACATAGTC 59.086 43.478 0.00 0.00 39.67 2.59
2677 3193 3.940209 ACGAAACCGTACATAGTCCAA 57.060 42.857 0.00 0.00 38.67 3.53
2683 3199 4.825546 ACCGTACATAGTCCAATAGTCG 57.174 45.455 0.00 0.00 0.00 4.18
2687 3203 5.411977 CCGTACATAGTCCAATAGTCGAGAT 59.588 44.000 0.00 0.00 0.00 2.75
2750 3268 3.763097 TGCGCTCAATATTCAGTTTGG 57.237 42.857 9.73 0.00 0.00 3.28
2753 3271 3.429085 CGCTCAATATTCAGTTTGGTGC 58.571 45.455 0.00 0.00 0.00 5.01
2769 3287 9.701355 CAGTTTGGTGCTAAAACTTTAAAAATG 57.299 29.630 8.61 0.00 43.60 2.32
2770 3288 8.394877 AGTTTGGTGCTAAAACTTTAAAAATGC 58.605 29.630 6.27 0.00 43.60 3.56
2773 3291 7.268586 TGGTGCTAAAACTTTAAAAATGCAGA 58.731 30.769 0.00 0.00 0.00 4.26
2774 3292 7.930865 TGGTGCTAAAACTTTAAAAATGCAGAT 59.069 29.630 0.00 0.00 0.00 2.90
2775 3293 8.773645 GGTGCTAAAACTTTAAAAATGCAGATT 58.226 29.630 0.00 0.00 0.00 2.40
2788 3306 6.982160 AAATGCAGATTTATAGCCATCCAA 57.018 33.333 0.00 0.00 29.49 3.53
2791 3309 5.448654 TGCAGATTTATAGCCATCCAACTT 58.551 37.500 0.00 0.00 0.00 2.66
2793 3311 5.278660 GCAGATTTATAGCCATCCAACTTGG 60.279 44.000 0.74 0.74 39.43 3.61
2794 3312 5.242393 CAGATTTATAGCCATCCAACTTGGG 59.758 44.000 8.01 0.00 38.32 4.12
2795 3313 4.601406 TTTATAGCCATCCAACTTGGGT 57.399 40.909 8.01 0.00 46.28 4.51
2796 3314 4.601406 TTATAGCCATCCAACTTGGGTT 57.399 40.909 8.01 0.00 42.12 4.11
2798 3316 0.779997 AGCCATCCAACTTGGGTTCT 59.220 50.000 8.01 0.00 42.12 3.01
2799 3317 1.177401 GCCATCCAACTTGGGTTCTC 58.823 55.000 8.01 0.00 38.32 2.87
2800 3318 1.547675 GCCATCCAACTTGGGTTCTCA 60.548 52.381 8.01 0.00 38.32 3.27
2801 3319 2.885554 GCCATCCAACTTGGGTTCTCAT 60.886 50.000 8.01 0.00 38.32 2.90
2802 3320 3.624707 GCCATCCAACTTGGGTTCTCATA 60.625 47.826 8.01 0.00 38.32 2.15
2804 3322 5.690097 GCCATCCAACTTGGGTTCTCATATA 60.690 44.000 8.01 0.00 38.32 0.86
2805 3323 6.364701 CCATCCAACTTGGGTTCTCATATAA 58.635 40.000 8.01 0.00 38.32 0.98
2806 3324 6.833416 CCATCCAACTTGGGTTCTCATATAAA 59.167 38.462 8.01 0.00 38.32 1.40
2807 3325 7.506938 CCATCCAACTTGGGTTCTCATATAAAT 59.493 37.037 8.01 0.00 38.32 1.40
2808 3326 9.573166 CATCCAACTTGGGTTCTCATATAAATA 57.427 33.333 8.01 0.00 38.32 1.40
2810 3328 9.573166 TCCAACTTGGGTTCTCATATAAATATG 57.427 33.333 8.01 3.94 38.77 1.78
2812 3330 9.354673 CAACTTGGGTTCTCATATAAATATGGT 57.645 33.333 9.51 0.00 36.26 3.55
2815 3333 8.918202 TTGGGTTCTCATATAAATATGGTCAC 57.082 34.615 9.51 4.71 40.35 3.67
2816 3334 8.040002 TGGGTTCTCATATAAATATGGTCACA 57.960 34.615 9.51 3.91 40.35 3.58
2817 3335 8.668653 TGGGTTCTCATATAAATATGGTCACAT 58.331 33.333 9.51 0.00 40.35 3.21
2818 3336 9.167311 GGGTTCTCATATAAATATGGTCACATC 57.833 37.037 9.51 0.01 40.35 3.06
2819 3337 8.873830 GGTTCTCATATAAATATGGTCACATCG 58.126 37.037 9.51 0.00 40.35 3.84
2820 3338 9.424319 GTTCTCATATAAATATGGTCACATCGT 57.576 33.333 9.51 0.00 40.35 3.73
2821 3339 9.996554 TTCTCATATAAATATGGTCACATCGTT 57.003 29.630 9.51 0.00 40.35 3.85
2822 3340 9.639601 TCTCATATAAATATGGTCACATCGTTC 57.360 33.333 9.51 0.00 40.35 3.95
2823 3341 8.460831 TCATATAAATATGGTCACATCGTTCG 57.539 34.615 9.51 0.00 40.35 3.95
2824 3342 8.085909 TCATATAAATATGGTCACATCGTTCGT 58.914 33.333 9.51 0.00 40.35 3.85
2825 3343 9.349145 CATATAAATATGGTCACATCGTTCGTA 57.651 33.333 2.55 0.00 38.53 3.43
2827 3345 8.827177 ATAAATATGGTCACATCGTTCGTATT 57.173 30.769 0.00 0.00 38.53 1.89
2829 3347 3.579335 TGGTCACATCGTTCGTATTCA 57.421 42.857 0.00 0.00 0.00 2.57
2830 3348 3.507786 TGGTCACATCGTTCGTATTCAG 58.492 45.455 0.00 0.00 0.00 3.02
2831 3349 3.191791 TGGTCACATCGTTCGTATTCAGA 59.808 43.478 0.00 0.00 0.00 3.27
2833 3351 4.163552 GTCACATCGTTCGTATTCAGACA 58.836 43.478 0.00 0.00 0.00 3.41
2834 3352 4.798907 GTCACATCGTTCGTATTCAGACAT 59.201 41.667 0.00 0.00 0.00 3.06
2835 3353 5.969435 GTCACATCGTTCGTATTCAGACATA 59.031 40.000 0.00 0.00 0.00 2.29
2836 3354 6.637254 GTCACATCGTTCGTATTCAGACATAT 59.363 38.462 0.00 0.00 0.00 1.78
2837 3355 6.856426 TCACATCGTTCGTATTCAGACATATC 59.144 38.462 0.00 0.00 0.00 1.63
2839 3357 6.016192 ACATCGTTCGTATTCAGACATATCCT 60.016 38.462 0.00 0.00 0.00 3.24
2840 3358 6.387041 TCGTTCGTATTCAGACATATCCTT 57.613 37.500 0.00 0.00 0.00 3.36
2842 3360 5.107837 CGTTCGTATTCAGACATATCCTTGC 60.108 44.000 0.00 0.00 0.00 4.01
2843 3361 5.791336 TCGTATTCAGACATATCCTTGCT 57.209 39.130 0.00 0.00 0.00 3.91
2844 3362 6.161855 TCGTATTCAGACATATCCTTGCTT 57.838 37.500 0.00 0.00 0.00 3.91
2845 3363 5.985530 TCGTATTCAGACATATCCTTGCTTG 59.014 40.000 0.00 0.00 0.00 4.01
2848 3366 4.558226 TCAGACATATCCTTGCTTGTGT 57.442 40.909 0.00 0.00 0.00 3.72
2849 3367 4.256110 TCAGACATATCCTTGCTTGTGTG 58.744 43.478 0.00 0.00 35.39 3.82
2850 3368 3.376234 CAGACATATCCTTGCTTGTGTGG 59.624 47.826 0.00 0.00 31.74 4.17
2851 3369 2.094675 ACATATCCTTGCTTGTGTGGC 58.905 47.619 0.00 0.00 0.00 5.01
2852 3370 2.093890 CATATCCTTGCTTGTGTGGCA 58.906 47.619 0.00 0.00 37.97 4.92
2853 3371 2.512692 TATCCTTGCTTGTGTGGCAT 57.487 45.000 0.00 0.00 39.54 4.40
2854 3372 1.636148 ATCCTTGCTTGTGTGGCATT 58.364 45.000 0.00 0.00 39.54 3.56
2856 3374 0.947180 CCTTGCTTGTGTGGCATTGC 60.947 55.000 0.00 0.00 39.54 3.56
2889 3407 2.887151 GCCTATGGCCCATAGTCATT 57.113 50.000 25.43 0.00 44.06 2.57
2891 3409 2.040278 GCCTATGGCCCATAGTCATTGA 59.960 50.000 25.43 0.00 44.06 2.57
2892 3410 3.679389 CCTATGGCCCATAGTCATTGAC 58.321 50.000 25.43 8.82 41.38 3.18
2893 3411 2.664402 ATGGCCCATAGTCATTGACC 57.336 50.000 13.14 0.00 32.18 4.02
2895 3413 0.535102 GGCCCATAGTCATTGACCGG 60.535 60.000 13.14 0.00 32.18 5.28
2897 3415 1.134220 GCCCATAGTCATTGACCGGAA 60.134 52.381 9.46 0.00 32.18 4.30
2899 3417 3.616219 CCCATAGTCATTGACCGGAAAA 58.384 45.455 9.46 1.35 32.18 2.29
2900 3418 4.013728 CCCATAGTCATTGACCGGAAAAA 58.986 43.478 9.46 0.00 32.18 1.94
2904 3422 6.458751 CCATAGTCATTGACCGGAAAAATGAG 60.459 42.308 22.58 14.73 40.11 2.90
2905 3423 4.651778 AGTCATTGACCGGAAAAATGAGA 58.348 39.130 22.58 7.99 40.11 3.27
2906 3424 5.070001 AGTCATTGACCGGAAAAATGAGAA 58.930 37.500 22.58 7.47 40.11 2.87
2907 3425 5.711976 AGTCATTGACCGGAAAAATGAGAAT 59.288 36.000 22.58 13.69 40.11 2.40
2908 3426 6.884295 AGTCATTGACCGGAAAAATGAGAATA 59.116 34.615 22.58 6.94 40.11 1.75
2909 3427 7.393234 AGTCATTGACCGGAAAAATGAGAATAA 59.607 33.333 22.58 6.43 40.11 1.40
2912 3430 9.369904 CATTGACCGGAAAAATGAGAATAAAAT 57.630 29.630 9.46 0.00 33.96 1.82
2913 3431 8.755696 TTGACCGGAAAAATGAGAATAAAATG 57.244 30.769 9.46 0.00 0.00 2.32
2914 3432 7.891561 TGACCGGAAAAATGAGAATAAAATGT 58.108 30.769 9.46 0.00 0.00 2.71
2915 3433 8.364142 TGACCGGAAAAATGAGAATAAAATGTT 58.636 29.630 9.46 0.00 0.00 2.71
2916 3434 8.532977 ACCGGAAAAATGAGAATAAAATGTTG 57.467 30.769 9.46 0.00 0.00 3.33
2917 3435 8.364142 ACCGGAAAAATGAGAATAAAATGTTGA 58.636 29.630 9.46 0.00 0.00 3.18
2918 3436 9.369904 CCGGAAAAATGAGAATAAAATGTTGAT 57.630 29.630 0.00 0.00 0.00 2.57
2923 3441 9.932207 AAAATGAGAATAAAATGTTGATGAGCA 57.068 25.926 0.00 0.00 0.00 4.26
2955 3473 7.610580 AATTAAAACCCTTCAAGGATGTTGA 57.389 32.000 4.43 0.00 37.67 3.18
2956 3474 7.797121 ATTAAAACCCTTCAAGGATGTTGAT 57.203 32.000 4.43 0.00 37.67 2.57
2957 3475 8.893563 ATTAAAACCCTTCAAGGATGTTGATA 57.106 30.769 4.43 0.00 37.67 2.15
2958 3476 8.713708 TTAAAACCCTTCAAGGATGTTGATAA 57.286 30.769 4.43 3.09 37.67 1.75
2959 3477 6.840780 AAACCCTTCAAGGATGTTGATAAG 57.159 37.500 4.43 0.00 37.67 1.73
2960 3478 4.273318 ACCCTTCAAGGATGTTGATAAGC 58.727 43.478 4.43 0.00 37.67 3.09
2961 3479 4.263905 ACCCTTCAAGGATGTTGATAAGCA 60.264 41.667 4.43 0.00 37.67 3.91
2962 3480 4.891756 CCCTTCAAGGATGTTGATAAGCAT 59.108 41.667 4.43 0.00 37.67 3.79
2963 3481 6.064060 CCCTTCAAGGATGTTGATAAGCATA 58.936 40.000 4.43 0.00 37.67 3.14
2964 3482 6.547141 CCCTTCAAGGATGTTGATAAGCATAA 59.453 38.462 4.43 0.00 37.67 1.90
2965 3483 7.255381 CCCTTCAAGGATGTTGATAAGCATAAG 60.255 40.741 4.43 0.00 37.67 1.73
2966 3484 7.500227 CCTTCAAGGATGTTGATAAGCATAAGA 59.500 37.037 0.00 0.00 37.67 2.10
2967 3485 8.806429 TTCAAGGATGTTGATAAGCATAAGAA 57.194 30.769 0.00 0.00 0.00 2.52
2970 3488 6.064717 AGGATGTTGATAAGCATAAGAACCC 58.935 40.000 0.00 0.00 0.00 4.11
2971 3489 5.827797 GGATGTTGATAAGCATAAGAACCCA 59.172 40.000 0.00 0.00 0.00 4.51
2972 3490 6.321181 GGATGTTGATAAGCATAAGAACCCAA 59.679 38.462 0.00 0.00 0.00 4.12
2973 3491 6.757897 TGTTGATAAGCATAAGAACCCAAG 57.242 37.500 0.00 0.00 0.00 3.61
2974 3492 6.245408 TGTTGATAAGCATAAGAACCCAAGT 58.755 36.000 0.00 0.00 0.00 3.16
2975 3493 6.719370 TGTTGATAAGCATAAGAACCCAAGTT 59.281 34.615 0.00 0.00 39.54 2.66
2977 3495 5.652014 TGATAAGCATAAGAACCCAAGTTGG 59.348 40.000 15.52 15.52 35.94 3.77
2978 3496 3.806949 AGCATAAGAACCCAAGTTGGA 57.193 42.857 24.06 1.96 40.96 3.53
2979 3497 4.322057 AGCATAAGAACCCAAGTTGGAT 57.678 40.909 24.06 11.59 40.96 3.41
2980 3498 5.450818 AGCATAAGAACCCAAGTTGGATA 57.549 39.130 24.06 8.35 40.96 2.59
3002 3572 1.228894 ACCTCGTCTTGCTCCCTCA 60.229 57.895 0.00 0.00 0.00 3.86
3004 3574 1.254284 CCTCGTCTTGCTCCCTCACT 61.254 60.000 0.00 0.00 0.00 3.41
3019 3589 3.588906 ACTGCGTCGGTGTCGTCA 61.589 61.111 0.00 0.00 37.69 4.35
3028 3598 1.590147 GGTGTCGTCAGGGTAGTGG 59.410 63.158 0.00 0.00 0.00 4.00
3031 3601 2.682494 TCGTCAGGGTAGTGGGCC 60.682 66.667 0.00 0.00 0.00 5.80
3087 3660 2.251642 GGTGCACCTTGGTCACGAC 61.252 63.158 29.12 0.00 0.00 4.34
3137 4363 2.118513 ACTCCAGGTCGGACAGCT 59.881 61.111 10.76 0.00 39.64 4.24
3139 4365 1.122019 ACTCCAGGTCGGACAGCTTT 61.122 55.000 10.76 0.00 39.64 3.51
3142 4368 0.108138 CCAGGTCGGACAGCTTTAGG 60.108 60.000 10.76 0.00 36.56 2.69
3155 4600 2.630592 CTTTAGGCGACGCTCCTCCC 62.631 65.000 20.77 1.13 35.21 4.30
3165 4610 1.003051 GCTCCTCCCCCTCCTTGTA 59.997 63.158 0.00 0.00 0.00 2.41
3169 4614 1.941682 TCCTCCCCCTCCTTGTACATA 59.058 52.381 0.00 0.00 0.00 2.29
3170 4615 2.047830 CCTCCCCCTCCTTGTACATAC 58.952 57.143 0.00 0.00 0.00 2.39
3178 4623 1.151777 CCTTGTACATACCAGCGGCG 61.152 60.000 0.51 0.51 0.00 6.46
3383 9760 3.619767 AGTCAGCGACTGCCAGCA 61.620 61.111 9.85 0.00 41.76 4.41
3403 9780 0.523966 GTGGACTGAGTGTCGGAGAG 59.476 60.000 0.00 0.00 46.24 3.20
3404 9781 0.609406 TGGACTGAGTGTCGGAGAGG 60.609 60.000 0.00 0.00 46.24 3.69
3405 9782 0.322636 GGACTGAGTGTCGGAGAGGA 60.323 60.000 0.00 0.00 46.24 3.71
3406 9783 1.091537 GACTGAGTGTCGGAGAGGAG 58.908 60.000 0.00 0.00 36.95 3.69
3407 9784 0.693622 ACTGAGTGTCGGAGAGGAGA 59.306 55.000 0.00 0.00 36.95 3.71
3408 9785 1.339631 ACTGAGTGTCGGAGAGGAGAG 60.340 57.143 0.00 0.00 36.95 3.20
3409 9786 0.984995 TGAGTGTCGGAGAGGAGAGA 59.015 55.000 0.00 0.00 36.95 3.10
3410 9787 1.339247 TGAGTGTCGGAGAGGAGAGAC 60.339 57.143 0.00 0.00 36.95 3.36
3450 9827 3.056749 GGAAAGCGACTTGGAGTAGAGAA 60.057 47.826 0.00 0.00 0.00 2.87
3451 9828 4.382147 GGAAAGCGACTTGGAGTAGAGAAT 60.382 45.833 0.00 0.00 0.00 2.40
3452 9829 3.791973 AGCGACTTGGAGTAGAGAATG 57.208 47.619 0.00 0.00 0.00 2.67
3453 9830 3.357203 AGCGACTTGGAGTAGAGAATGA 58.643 45.455 0.00 0.00 0.00 2.57
3454 9831 3.380004 AGCGACTTGGAGTAGAGAATGAG 59.620 47.826 0.00 0.00 0.00 2.90
3455 9832 3.378742 GCGACTTGGAGTAGAGAATGAGA 59.621 47.826 0.00 0.00 0.00 3.27
3456 9833 4.142359 GCGACTTGGAGTAGAGAATGAGAA 60.142 45.833 0.00 0.00 0.00 2.87
3457 9834 5.451242 GCGACTTGGAGTAGAGAATGAGAAT 60.451 44.000 0.00 0.00 0.00 2.40
3458 9835 6.238786 GCGACTTGGAGTAGAGAATGAGAATA 60.239 42.308 0.00 0.00 0.00 1.75
3460 9837 8.191446 CGACTTGGAGTAGAGAATGAGAATAAA 58.809 37.037 0.00 0.00 0.00 1.40
3461 9838 9.877178 GACTTGGAGTAGAGAATGAGAATAAAA 57.123 33.333 0.00 0.00 0.00 1.52
3487 9864 8.932434 TGTTAATAAGCATTTATAGCCATCCA 57.068 30.769 0.00 0.00 0.00 3.41
3488 9865 9.360901 TGTTAATAAGCATTTATAGCCATCCAA 57.639 29.630 0.00 0.00 0.00 3.53
3490 9867 9.586732 TTAATAAGCATTTATAGCCATCCAACT 57.413 29.630 0.00 0.00 0.00 3.16
3491 9868 8.482852 AATAAGCATTTATAGCCATCCAACTT 57.517 30.769 0.00 0.00 0.00 2.66
3492 9869 5.779529 AGCATTTATAGCCATCCAACTTG 57.220 39.130 0.00 0.00 0.00 3.16
3496 9873 4.601406 TTATAGCCATCCAACTTGGGTT 57.399 40.909 8.01 0.00 42.12 4.11
3497 9874 2.507407 TAGCCATCCAACTTGGGTTC 57.493 50.000 8.01 0.00 42.12 3.62
3499 9876 1.177401 GCCATCCAACTTGGGTTCTC 58.823 55.000 8.01 0.00 38.32 2.87
3500 9877 1.547675 GCCATCCAACTTGGGTTCTCA 60.548 52.381 8.01 0.00 38.32 3.27
3502 9879 3.624707 GCCATCCAACTTGGGTTCTCATA 60.625 47.826 8.01 0.00 38.32 2.15
3503 9880 4.796606 CCATCCAACTTGGGTTCTCATAT 58.203 43.478 8.01 0.00 38.32 1.78
3504 9881 5.690097 GCCATCCAACTTGGGTTCTCATATA 60.690 44.000 8.01 0.00 38.32 0.86
3505 9882 6.364701 CCATCCAACTTGGGTTCTCATATAA 58.635 40.000 8.01 0.00 38.32 0.98
3506 9883 6.833416 CCATCCAACTTGGGTTCTCATATAAA 59.167 38.462 8.01 0.00 38.32 1.40
3507 9884 7.341769 CCATCCAACTTGGGTTCTCATATAAAA 59.658 37.037 8.01 0.00 38.32 1.52
3508 9885 8.917088 CATCCAACTTGGGTTCTCATATAAAAT 58.083 33.333 8.01 0.00 38.32 1.82
3509 9886 8.292444 TCCAACTTGGGTTCTCATATAAAATG 57.708 34.615 8.01 0.00 38.32 2.32
3511 9888 7.147846 CCAACTTGGGTTCTCATATAAAATGCT 60.148 37.037 0.00 0.00 32.67 3.79
3512 9889 7.961326 ACTTGGGTTCTCATATAAAATGCTT 57.039 32.000 0.00 0.00 0.00 3.91
3514 9891 8.253113 ACTTGGGTTCTCATATAAAATGCTTTG 58.747 33.333 0.00 0.00 0.00 2.77
3515 9892 7.716799 TGGGTTCTCATATAAAATGCTTTGT 57.283 32.000 0.00 0.00 0.00 2.83
3516 9893 7.546358 TGGGTTCTCATATAAAATGCTTTGTG 58.454 34.615 0.00 0.00 0.00 3.33
3517 9894 6.980397 GGGTTCTCATATAAAATGCTTTGTGG 59.020 38.462 0.00 0.00 0.00 4.17
3519 9896 7.147915 GGTTCTCATATAAAATGCTTTGTGGGA 60.148 37.037 0.00 0.00 0.00 4.37
3520 9897 8.416329 GTTCTCATATAAAATGCTTTGTGGGAT 58.584 33.333 0.00 0.00 0.00 3.85
3521 9898 7.944061 TCTCATATAAAATGCTTTGTGGGATG 58.056 34.615 0.00 0.00 0.00 3.51
3523 9900 8.076910 TCATATAAAATGCTTTGTGGGATGTT 57.923 30.769 0.00 0.00 0.00 2.71
3524 9901 9.194972 TCATATAAAATGCTTTGTGGGATGTTA 57.805 29.630 0.00 0.00 0.00 2.41
3526 9903 5.806654 AAAATGCTTTGTGGGATGTTAGT 57.193 34.783 0.00 0.00 0.00 2.24
3527 9904 5.391312 AAATGCTTTGTGGGATGTTAGTC 57.609 39.130 0.00 0.00 0.00 2.59
3528 9905 3.788227 TGCTTTGTGGGATGTTAGTCT 57.212 42.857 0.00 0.00 0.00 3.24
3530 9907 3.072330 TGCTTTGTGGGATGTTAGTCTGA 59.928 43.478 0.00 0.00 0.00 3.27
3531 9908 4.263462 TGCTTTGTGGGATGTTAGTCTGAT 60.263 41.667 0.00 0.00 0.00 2.90
3532 9909 4.333926 GCTTTGTGGGATGTTAGTCTGATC 59.666 45.833 0.00 0.00 0.00 2.92
3534 9911 6.630413 GCTTTGTGGGATGTTAGTCTGATCTA 60.630 42.308 0.00 0.00 0.00 1.98
3535 9912 7.437713 TTTGTGGGATGTTAGTCTGATCTAT 57.562 36.000 0.00 0.00 0.00 1.98
3536 9913 7.437713 TTGTGGGATGTTAGTCTGATCTATT 57.562 36.000 0.00 0.00 0.00 1.73
3537 9914 7.437713 TGTGGGATGTTAGTCTGATCTATTT 57.562 36.000 0.00 0.00 0.00 1.40
3540 9917 8.207545 GTGGGATGTTAGTCTGATCTATTTTCT 58.792 37.037 0.00 0.00 0.00 2.52
3542 9919 9.620259 GGGATGTTAGTCTGATCTATTTTCTTT 57.380 33.333 0.00 0.00 0.00 2.52
3546 9923 9.155975 TGTTAGTCTGATCTATTTTCTTTGAGC 57.844 33.333 0.00 0.00 0.00 4.26
3547 9924 9.377312 GTTAGTCTGATCTATTTTCTTTGAGCT 57.623 33.333 0.00 0.00 0.00 4.09
3548 9925 9.950496 TTAGTCTGATCTATTTTCTTTGAGCTT 57.050 29.630 0.00 0.00 0.00 3.74
3549 9926 8.860780 AGTCTGATCTATTTTCTTTGAGCTTT 57.139 30.769 0.00 0.00 0.00 3.51
3550 9927 9.294614 AGTCTGATCTATTTTCTTTGAGCTTTT 57.705 29.630 0.00 0.00 0.00 2.27
3552 9929 9.071276 TCTGATCTATTTTCTTTGAGCTTTTGT 57.929 29.630 0.00 0.00 0.00 2.83
3554 9931 9.071276 TGATCTATTTTCTTTGAGCTTTTGTCT 57.929 29.630 0.00 0.00 0.00 3.41
3555 9932 9.339492 GATCTATTTTCTTTGAGCTTTTGTCTG 57.661 33.333 0.00 0.00 0.00 3.51
3556 9933 8.450578 TCTATTTTCTTTGAGCTTTTGTCTGA 57.549 30.769 0.00 0.00 0.00 3.27
3557 9934 8.902806 TCTATTTTCTTTGAGCTTTTGTCTGAA 58.097 29.630 0.00 0.00 0.00 3.02
3559 9936 7.760131 TTTTCTTTGAGCTTTTGTCTGAATG 57.240 32.000 0.00 0.00 0.00 2.67
3560 9937 6.698008 TTCTTTGAGCTTTTGTCTGAATGA 57.302 33.333 0.00 0.00 0.00 2.57
3561 9938 6.889301 TCTTTGAGCTTTTGTCTGAATGAT 57.111 33.333 0.00 0.00 0.00 2.45
3562 9939 7.984422 TCTTTGAGCTTTTGTCTGAATGATA 57.016 32.000 0.00 0.00 0.00 2.15
3563 9940 8.037382 TCTTTGAGCTTTTGTCTGAATGATAG 57.963 34.615 0.00 0.00 0.00 2.08
3564 9941 5.808042 TGAGCTTTTGTCTGAATGATAGC 57.192 39.130 0.00 0.00 0.00 2.97
3565 9942 4.637534 TGAGCTTTTGTCTGAATGATAGCC 59.362 41.667 0.00 0.00 0.00 3.93
3566 9943 4.592942 AGCTTTTGTCTGAATGATAGCCA 58.407 39.130 0.00 0.00 0.00 4.75
3567 9944 5.012239 AGCTTTTGTCTGAATGATAGCCAA 58.988 37.500 0.00 0.00 0.00 4.52
3568 9945 5.477984 AGCTTTTGTCTGAATGATAGCCAAA 59.522 36.000 0.00 0.00 0.00 3.28
3569 9946 6.154021 AGCTTTTGTCTGAATGATAGCCAAAT 59.846 34.615 0.00 0.00 0.00 2.32
3570 9947 6.815142 GCTTTTGTCTGAATGATAGCCAAATT 59.185 34.615 0.00 0.00 0.00 1.82
3571 9948 7.975616 GCTTTTGTCTGAATGATAGCCAAATTA 59.024 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.796193 ATCGCTCACCGGCATGCTA 61.796 57.895 18.92 0.00 37.59 3.49
22 23 1.811266 CTCAACCATCGCTCACCGG 60.811 63.158 0.00 0.00 37.59 5.28
32 33 0.916358 CCCACCCTCTCCTCAACCAT 60.916 60.000 0.00 0.00 0.00 3.55
33 34 1.538876 CCCACCCTCTCCTCAACCA 60.539 63.158 0.00 0.00 0.00 3.67
128 129 2.529389 ACGGCTTCCTCCCCAAGT 60.529 61.111 0.00 0.00 0.00 3.16
129 130 2.045926 CACGGCTTCCTCCCCAAG 60.046 66.667 0.00 0.00 0.00 3.61
155 156 8.198109 CCTTTCTTCAACCTCTCGAATATCTTA 58.802 37.037 0.00 0.00 0.00 2.10
160 161 5.995565 TCCTTTCTTCAACCTCTCGAATA 57.004 39.130 0.00 0.00 0.00 1.75
161 162 4.891992 TCCTTTCTTCAACCTCTCGAAT 57.108 40.909 0.00 0.00 0.00 3.34
188 189 1.262950 TGTCGAATGCAAAACGGACAG 59.737 47.619 0.00 0.00 0.00 3.51
192 193 1.059657 CGCTGTCGAATGCAAAACGG 61.060 55.000 10.77 0.00 38.10 4.44
203 204 0.606096 TGATTCTTTCCCGCTGTCGA 59.394 50.000 0.00 0.00 38.10 4.20
208 209 2.427506 GTCAGTTGATTCTTTCCCGCT 58.572 47.619 0.00 0.00 0.00 5.52
211 212 3.084786 CTGGGTCAGTTGATTCTTTCCC 58.915 50.000 0.00 0.00 34.77 3.97
225 226 7.123547 AGTTGACTGAAAAATTAAACTGGGTCA 59.876 33.333 0.00 0.00 0.00 4.02
238 239 5.529800 GGCTAGGTGTAAGTTGACTGAAAAA 59.470 40.000 0.00 0.00 0.00 1.94
268 276 9.744468 AGTGAACTTTCATAAATTTTGGTACAC 57.256 29.630 0.00 0.00 37.59 2.90
386 395 8.258708 ACTAATGAATTCGAGCTAAACTTAGGT 58.741 33.333 0.04 0.90 43.55 3.08
533 563 0.742505 TCGTATCAACCAGTAGCGGG 59.257 55.000 0.00 0.00 0.00 6.13
543 573 9.878599 CTGTCCCAAAATATTAATCGTATCAAC 57.121 33.333 0.00 0.00 0.00 3.18
545 575 9.489084 CTCTGTCCCAAAATATTAATCGTATCA 57.511 33.333 0.00 0.00 0.00 2.15
552 582 7.961326 ACTTGCTCTGTCCCAAAATATTAAT 57.039 32.000 0.00 0.00 0.00 1.40
553 583 9.474313 AATACTTGCTCTGTCCCAAAATATTAA 57.526 29.630 0.00 0.00 0.00 1.40
554 584 9.474313 AAATACTTGCTCTGTCCCAAAATATTA 57.526 29.630 0.00 0.00 0.00 0.98
556 586 7.961326 AAATACTTGCTCTGTCCCAAAATAT 57.039 32.000 0.00 0.00 0.00 1.28
568 644 5.124457 CACTATGCACCAAAATACTTGCTCT 59.876 40.000 0.00 0.00 35.91 4.09
628 705 8.415950 ACATGTGTTCCCATTAAGTTTGAATA 57.584 30.769 0.00 0.00 0.00 1.75
636 713 9.487790 ACAATAAAAACATGTGTTCCCATTAAG 57.512 29.630 0.63 0.00 37.25 1.85
638 715 8.642432 TCACAATAAAAACATGTGTTCCCATTA 58.358 29.630 0.63 0.00 43.72 1.90
786 874 0.321671 CAAGCTCTTGTCCCCGAAGA 59.678 55.000 1.61 0.00 35.92 2.87
813 901 0.457681 GTCGAGAGCTGAGTTCTGGC 60.458 60.000 2.78 0.00 0.00 4.85
823 911 2.360600 AGAGGCGTGTCGAGAGCT 60.361 61.111 6.64 0.00 0.00 4.09
910 998 1.739371 GCACCGTAAGACACCCTCATC 60.739 57.143 0.00 0.00 43.02 2.92
911 999 0.249398 GCACCGTAAGACACCCTCAT 59.751 55.000 0.00 0.00 43.02 2.90
912 1000 1.116536 TGCACCGTAAGACACCCTCA 61.117 55.000 0.00 0.00 43.02 3.86
913 1001 0.034337 TTGCACCGTAAGACACCCTC 59.966 55.000 0.00 0.00 43.02 4.30
914 1002 0.034896 CTTGCACCGTAAGACACCCT 59.965 55.000 0.00 0.00 43.02 4.34
915 1003 0.034337 TCTTGCACCGTAAGACACCC 59.966 55.000 0.00 0.00 43.02 4.61
918 1006 1.067364 TCGTTCTTGCACCGTAAGACA 59.933 47.619 0.00 0.00 43.02 3.41
919 1007 1.719780 CTCGTTCTTGCACCGTAAGAC 59.280 52.381 0.00 0.00 43.02 3.01
920 1008 1.336517 CCTCGTTCTTGCACCGTAAGA 60.337 52.381 0.00 0.00 43.02 2.10
922 1010 0.947180 GCCTCGTTCTTGCACCGTAA 60.947 55.000 0.00 0.00 0.00 3.18
924 1012 2.665185 GCCTCGTTCTTGCACCGT 60.665 61.111 0.00 0.00 0.00 4.83
925 1013 2.357517 AGCCTCGTTCTTGCACCG 60.358 61.111 0.00 0.00 0.00 4.94
969 1058 2.821366 GCACCATGGCCGAGTCTG 60.821 66.667 13.04 1.20 0.00 3.51
988 1077 1.139853 GGAGACCATAGCCTCAACTGG 59.860 57.143 0.00 0.00 34.84 4.00
1045 1134 4.409218 GTACAGCGGCGACACGGA 62.409 66.667 12.98 0.00 0.00 4.69
1046 1135 3.909258 AAGTACAGCGGCGACACGG 62.909 63.158 12.98 0.00 0.00 4.94
1215 1306 4.168760 GCATGTGCTTTTAGAATCCACAC 58.831 43.478 0.00 0.00 38.99 3.82
1231 1326 5.209977 CGAGGATTGACAATTATGCATGTG 58.790 41.667 10.16 7.36 0.00 3.21
1263 1396 5.583061 TGTTCACATCGATGGTTGGTAATAC 59.417 40.000 28.09 12.78 0.00 1.89
1268 1613 2.559698 TGTTCACATCGATGGTTGGT 57.440 45.000 28.09 4.96 0.00 3.67
1269 1614 4.439305 AAATGTTCACATCGATGGTTGG 57.561 40.909 28.09 14.77 35.10 3.77
1270 1615 5.459768 TGAAAATGTTCACATCGATGGTTG 58.540 37.500 28.09 18.33 38.88 3.77
1271 1616 5.473162 TCTGAAAATGTTCACATCGATGGTT 59.527 36.000 28.09 6.52 38.88 3.67
1290 1635 1.074405 AGCAGCCTCACCATTTCTGAA 59.926 47.619 0.00 0.00 0.00 3.02
1392 1737 1.817209 GATGGAGAGGTCACCGTCC 59.183 63.158 10.73 10.73 36.87 4.79
1464 1815 4.775977 AGAGCAGAGAGGCCGCCT 62.776 66.667 13.16 13.16 36.03 5.52
2127 2518 2.403987 CCGTAGACGAGCAGGACG 59.596 66.667 3.07 0.00 43.02 4.79
2436 2839 0.452184 CGACGACTGGATACTGCTGT 59.548 55.000 0.66 0.66 39.52 4.40
2642 3158 3.845216 GGTTTCGTTTCGTTTCGTTTCAA 59.155 39.130 0.00 0.00 0.00 2.69
2769 3287 5.278660 CCAAGTTGGATGGCTATAAATCTGC 60.279 44.000 17.60 0.00 40.96 4.26
2770 3288 5.242393 CCCAAGTTGGATGGCTATAAATCTG 59.758 44.000 24.06 0.00 40.96 2.90
2773 3291 5.142806 ACCCAAGTTGGATGGCTATAAAT 57.857 39.130 24.06 0.00 40.96 1.40
2774 3292 4.601406 ACCCAAGTTGGATGGCTATAAA 57.399 40.909 24.06 0.00 40.96 1.40
2775 3293 4.229582 AGAACCCAAGTTGGATGGCTATAA 59.770 41.667 24.06 0.00 40.96 0.98
2776 3294 3.785887 AGAACCCAAGTTGGATGGCTATA 59.214 43.478 24.06 0.00 40.96 1.31
2778 3296 1.992557 AGAACCCAAGTTGGATGGCTA 59.007 47.619 24.06 0.00 40.96 3.93
2779 3297 0.779997 AGAACCCAAGTTGGATGGCT 59.220 50.000 24.06 11.44 40.96 4.75
2780 3298 1.177401 GAGAACCCAAGTTGGATGGC 58.823 55.000 24.06 9.38 40.96 4.40
2782 3300 7.880160 TTTATATGAGAACCCAAGTTGGATG 57.120 36.000 24.06 10.01 40.96 3.51
2785 3303 8.796475 CCATATTTATATGAGAACCCAAGTTGG 58.204 37.037 15.52 15.52 42.05 3.77
2788 3306 8.723365 TGACCATATTTATATGAGAACCCAAGT 58.277 33.333 10.57 0.00 42.05 3.16
2791 3309 8.040002 TGTGACCATATTTATATGAGAACCCA 57.960 34.615 10.57 0.00 42.05 4.51
2793 3311 8.873830 CGATGTGACCATATTTATATGAGAACC 58.126 37.037 10.57 0.00 42.05 3.62
2794 3312 9.424319 ACGATGTGACCATATTTATATGAGAAC 57.576 33.333 10.57 6.53 42.05 3.01
2795 3313 9.996554 AACGATGTGACCATATTTATATGAGAA 57.003 29.630 10.57 0.00 42.05 2.87
2796 3314 9.639601 GAACGATGTGACCATATTTATATGAGA 57.360 33.333 10.57 0.00 42.05 3.27
2798 3316 8.085909 ACGAACGATGTGACCATATTTATATGA 58.914 33.333 10.57 0.00 42.05 2.15
2799 3317 8.239681 ACGAACGATGTGACCATATTTATATG 57.760 34.615 0.14 3.27 39.80 1.78
2801 3319 9.917129 AATACGAACGATGTGACCATATTTATA 57.083 29.630 0.14 0.00 0.00 0.98
2802 3320 8.827177 AATACGAACGATGTGACCATATTTAT 57.173 30.769 0.14 0.00 0.00 1.40
2804 3322 6.759356 TGAATACGAACGATGTGACCATATTT 59.241 34.615 0.14 0.00 0.00 1.40
2805 3323 6.277605 TGAATACGAACGATGTGACCATATT 58.722 36.000 0.14 0.00 0.00 1.28
2806 3324 5.838529 TGAATACGAACGATGTGACCATAT 58.161 37.500 0.14 0.00 0.00 1.78
2807 3325 5.066764 TCTGAATACGAACGATGTGACCATA 59.933 40.000 0.14 0.00 0.00 2.74
2808 3326 4.112634 CTGAATACGAACGATGTGACCAT 58.887 43.478 0.14 0.00 0.00 3.55
2809 3327 3.191791 TCTGAATACGAACGATGTGACCA 59.808 43.478 0.14 0.00 0.00 4.02
2810 3328 3.546670 GTCTGAATACGAACGATGTGACC 59.453 47.826 0.14 0.00 0.00 4.02
2812 3330 4.428615 TGTCTGAATACGAACGATGTGA 57.571 40.909 0.14 0.00 0.00 3.58
2815 3333 6.382608 AGGATATGTCTGAATACGAACGATG 58.617 40.000 0.14 0.00 0.00 3.84
2816 3334 6.576662 AGGATATGTCTGAATACGAACGAT 57.423 37.500 0.14 0.00 0.00 3.73
2817 3335 6.206498 CAAGGATATGTCTGAATACGAACGA 58.794 40.000 0.14 0.00 0.00 3.85
2818 3336 5.107837 GCAAGGATATGTCTGAATACGAACG 60.108 44.000 0.00 0.00 0.00 3.95
2819 3337 5.986135 AGCAAGGATATGTCTGAATACGAAC 59.014 40.000 0.00 0.00 0.00 3.95
2820 3338 6.161855 AGCAAGGATATGTCTGAATACGAA 57.838 37.500 0.00 0.00 0.00 3.85
2821 3339 5.791336 AGCAAGGATATGTCTGAATACGA 57.209 39.130 0.00 0.00 0.00 3.43
2822 3340 5.755375 ACAAGCAAGGATATGTCTGAATACG 59.245 40.000 0.00 0.00 0.00 3.06
2823 3341 6.540189 ACACAAGCAAGGATATGTCTGAATAC 59.460 38.462 0.00 0.00 0.00 1.89
2824 3342 6.539826 CACACAAGCAAGGATATGTCTGAATA 59.460 38.462 0.00 0.00 0.00 1.75
2825 3343 5.356190 CACACAAGCAAGGATATGTCTGAAT 59.644 40.000 0.00 0.00 0.00 2.57
2826 3344 4.696877 CACACAAGCAAGGATATGTCTGAA 59.303 41.667 0.00 0.00 0.00 3.02
2827 3345 4.256110 CACACAAGCAAGGATATGTCTGA 58.744 43.478 0.00 0.00 0.00 3.27
2829 3347 3.614092 CCACACAAGCAAGGATATGTCT 58.386 45.455 0.00 0.00 0.00 3.41
2830 3348 2.098117 GCCACACAAGCAAGGATATGTC 59.902 50.000 0.00 0.00 0.00 3.06
2831 3349 2.094675 GCCACACAAGCAAGGATATGT 58.905 47.619 0.00 0.00 0.00 2.29
2833 3351 2.512692 TGCCACACAAGCAAGGATAT 57.487 45.000 0.00 0.00 37.28 1.63
2834 3352 2.492881 CAATGCCACACAAGCAAGGATA 59.507 45.455 0.00 0.00 44.83 2.59
2835 3353 1.274167 CAATGCCACACAAGCAAGGAT 59.726 47.619 0.00 0.00 44.83 3.24
2836 3354 0.675083 CAATGCCACACAAGCAAGGA 59.325 50.000 0.00 0.00 44.83 3.36
2837 3355 0.947180 GCAATGCCACACAAGCAAGG 60.947 55.000 0.00 0.00 44.83 3.61
2839 3357 4.754570 GCAATGCCACACAAGCAA 57.245 50.000 0.00 0.00 44.83 3.91
2871 3389 3.560025 GGTCAATGACTATGGGCCATAGG 60.560 52.174 41.81 29.29 45.61 2.57
2872 3390 3.679389 GGTCAATGACTATGGGCCATAG 58.321 50.000 39.52 39.52 46.43 2.23
2873 3391 2.038426 CGGTCAATGACTATGGGCCATA 59.962 50.000 24.25 24.25 32.47 2.74
2874 3392 1.202806 CGGTCAATGACTATGGGCCAT 60.203 52.381 24.69 24.69 32.47 4.40
2878 3396 3.275617 TTTCCGGTCAATGACTATGGG 57.724 47.619 13.53 9.61 32.47 4.00
2879 3397 5.356751 TCATTTTTCCGGTCAATGACTATGG 59.643 40.000 13.53 12.42 33.03 2.74
2880 3398 6.316140 TCTCATTTTTCCGGTCAATGACTATG 59.684 38.462 13.53 3.85 34.10 2.23
2881 3399 6.414732 TCTCATTTTTCCGGTCAATGACTAT 58.585 36.000 13.53 0.00 34.10 2.12
2882 3400 5.800296 TCTCATTTTTCCGGTCAATGACTA 58.200 37.500 13.53 9.03 34.10 2.59
2883 3401 4.651778 TCTCATTTTTCCGGTCAATGACT 58.348 39.130 13.53 0.00 34.10 3.41
2884 3402 5.371115 TTCTCATTTTTCCGGTCAATGAC 57.629 39.130 16.69 4.51 34.10 3.06
2886 3404 8.755696 TTTTATTCTCATTTTTCCGGTCAATG 57.244 30.769 0.00 8.87 0.00 2.82
2887 3405 9.369904 CATTTTATTCTCATTTTTCCGGTCAAT 57.630 29.630 0.00 0.00 0.00 2.57
2888 3406 8.364142 ACATTTTATTCTCATTTTTCCGGTCAA 58.636 29.630 0.00 0.00 0.00 3.18
2889 3407 7.891561 ACATTTTATTCTCATTTTTCCGGTCA 58.108 30.769 0.00 0.00 0.00 4.02
2891 3409 8.364142 TCAACATTTTATTCTCATTTTTCCGGT 58.636 29.630 0.00 0.00 0.00 5.28
2892 3410 8.755696 TCAACATTTTATTCTCATTTTTCCGG 57.244 30.769 0.00 0.00 0.00 5.14
2897 3415 9.932207 TGCTCATCAACATTTTATTCTCATTTT 57.068 25.926 0.00 0.00 0.00 1.82
2928 3446 9.771534 CAACATCCTTGAAGGGTTTTAATTTTA 57.228 29.630 11.99 0.00 35.59 1.52
2929 3447 8.490311 TCAACATCCTTGAAGGGTTTTAATTTT 58.510 29.630 11.99 0.00 35.59 1.82
2930 3448 8.028652 TCAACATCCTTGAAGGGTTTTAATTT 57.971 30.769 11.99 0.00 35.59 1.82
2931 3449 7.610580 TCAACATCCTTGAAGGGTTTTAATT 57.389 32.000 11.99 0.00 35.59 1.40
2932 3450 7.797121 ATCAACATCCTTGAAGGGTTTTAAT 57.203 32.000 11.99 0.00 35.59 1.40
2933 3451 8.713708 TTATCAACATCCTTGAAGGGTTTTAA 57.286 30.769 11.99 6.45 35.59 1.52
2934 3452 7.093945 GCTTATCAACATCCTTGAAGGGTTTTA 60.094 37.037 11.99 0.25 35.59 1.52
2935 3453 6.295292 GCTTATCAACATCCTTGAAGGGTTTT 60.295 38.462 11.99 0.00 35.59 2.43
2936 3454 5.185828 GCTTATCAACATCCTTGAAGGGTTT 59.814 40.000 11.99 0.00 35.59 3.27
2937 3455 4.706962 GCTTATCAACATCCTTGAAGGGTT 59.293 41.667 11.99 5.72 35.59 4.11
2938 3456 4.263905 TGCTTATCAACATCCTTGAAGGGT 60.264 41.667 11.99 0.00 35.59 4.34
2939 3457 4.272489 TGCTTATCAACATCCTTGAAGGG 58.728 43.478 11.99 0.00 35.59 3.95
2940 3458 7.500227 TCTTATGCTTATCAACATCCTTGAAGG 59.500 37.037 4.45 4.45 36.46 3.46
2941 3459 8.442632 TCTTATGCTTATCAACATCCTTGAAG 57.557 34.615 0.00 0.00 31.55 3.02
2942 3460 8.677300 GTTCTTATGCTTATCAACATCCTTGAA 58.323 33.333 0.00 0.00 31.55 2.69
2943 3461 7.283127 GGTTCTTATGCTTATCAACATCCTTGA 59.717 37.037 0.00 0.00 0.00 3.02
2944 3462 7.420800 GGTTCTTATGCTTATCAACATCCTTG 58.579 38.462 0.00 0.00 0.00 3.61
2945 3463 6.547510 GGGTTCTTATGCTTATCAACATCCTT 59.452 38.462 0.00 0.00 0.00 3.36
2946 3464 6.064717 GGGTTCTTATGCTTATCAACATCCT 58.935 40.000 0.00 0.00 0.00 3.24
2948 3466 6.942532 TGGGTTCTTATGCTTATCAACATC 57.057 37.500 0.00 0.00 0.00 3.06
2949 3467 6.891908 ACTTGGGTTCTTATGCTTATCAACAT 59.108 34.615 0.00 0.00 0.00 2.71
2951 3469 6.759497 ACTTGGGTTCTTATGCTTATCAAC 57.241 37.500 0.00 0.00 0.00 3.18
2952 3470 6.152661 CCAACTTGGGTTCTTATGCTTATCAA 59.847 38.462 0.00 0.00 32.67 2.57
2953 3471 5.652014 CCAACTTGGGTTCTTATGCTTATCA 59.348 40.000 0.00 0.00 32.67 2.15
2955 3473 5.826643 TCCAACTTGGGTTCTTATGCTTAT 58.173 37.500 8.01 0.00 38.32 1.73
2956 3474 5.249780 TCCAACTTGGGTTCTTATGCTTA 57.750 39.130 8.01 0.00 38.32 3.09
2957 3475 4.112634 TCCAACTTGGGTTCTTATGCTT 57.887 40.909 8.01 0.00 38.32 3.91
2958 3476 3.806949 TCCAACTTGGGTTCTTATGCT 57.193 42.857 8.01 0.00 38.32 3.79
2959 3477 5.450550 GCTTATCCAACTTGGGTTCTTATGC 60.451 44.000 8.01 0.00 38.32 3.14
2960 3478 5.652014 TGCTTATCCAACTTGGGTTCTTATG 59.348 40.000 8.01 0.00 38.32 1.90
2961 3479 5.652452 GTGCTTATCCAACTTGGGTTCTTAT 59.348 40.000 8.01 0.00 38.32 1.73
2962 3480 5.007682 GTGCTTATCCAACTTGGGTTCTTA 58.992 41.667 8.01 0.00 38.32 2.10
2963 3481 3.826729 GTGCTTATCCAACTTGGGTTCTT 59.173 43.478 8.01 0.00 38.32 2.52
2964 3482 3.421844 GTGCTTATCCAACTTGGGTTCT 58.578 45.455 8.01 0.00 38.32 3.01
2965 3483 2.492088 GGTGCTTATCCAACTTGGGTTC 59.508 50.000 8.01 0.00 38.32 3.62
2966 3484 2.110011 AGGTGCTTATCCAACTTGGGTT 59.890 45.455 8.01 0.00 38.32 4.11
2967 3485 1.710809 AGGTGCTTATCCAACTTGGGT 59.289 47.619 8.01 3.13 38.32 4.51
2970 3488 2.673368 GACGAGGTGCTTATCCAACTTG 59.327 50.000 0.00 0.00 39.39 3.16
2971 3489 2.567615 AGACGAGGTGCTTATCCAACTT 59.432 45.455 0.00 0.00 31.67 2.66
2972 3490 2.180276 AGACGAGGTGCTTATCCAACT 58.820 47.619 0.00 0.00 34.93 3.16
2973 3491 2.673368 CAAGACGAGGTGCTTATCCAAC 59.327 50.000 0.00 0.00 0.00 3.77
2974 3492 2.935238 GCAAGACGAGGTGCTTATCCAA 60.935 50.000 0.00 0.00 37.78 3.53
2975 3493 1.405526 GCAAGACGAGGTGCTTATCCA 60.406 52.381 0.00 0.00 37.78 3.41
3004 3574 4.337060 CCTGACGACACCGACGCA 62.337 66.667 0.00 0.00 39.50 5.24
3019 3589 2.210102 AAGGTGGCCCACTACCCT 59.790 61.111 14.71 0.00 37.70 4.34
3071 3644 2.279851 CGTCGTGACCAAGGTGCA 60.280 61.111 0.00 0.00 0.00 4.57
3137 4363 2.718073 GGGAGGAGCGTCGCCTAAA 61.718 63.158 14.86 0.00 32.83 1.85
3145 4590 4.012721 AAGGAGGGGGAGGAGCGT 62.013 66.667 0.00 0.00 0.00 5.07
3155 4600 1.202533 CGCTGGTATGTACAAGGAGGG 60.203 57.143 0.00 0.00 0.00 4.30
3165 4610 4.838152 CTGCCGCCGCTGGTATGT 62.838 66.667 0.00 0.00 35.36 2.29
3205 5153 1.307647 GCCCCACCTCATGTTCCAT 59.692 57.895 0.00 0.00 0.00 3.41
3206 5154 2.763215 GCCCCACCTCATGTTCCA 59.237 61.111 0.00 0.00 0.00 3.53
3261 5460 1.654220 GAAAAACTGCTGCCTCGCA 59.346 52.632 0.00 0.00 38.40 5.10
3332 9709 1.218316 CTCGTGTCCTTGCCTACCC 59.782 63.158 0.00 0.00 0.00 3.69
3333 9710 0.108756 GACTCGTGTCCTTGCCTACC 60.109 60.000 6.35 0.00 37.24 3.18
3357 9734 2.523168 TCGCTGACTGGTGGTCCA 60.523 61.111 0.00 0.00 43.89 4.02
3366 9743 3.586461 CTGCTGGCAGTCGCTGACT 62.586 63.158 17.16 5.54 44.44 3.41
3383 9760 0.110678 TCTCCGACACTCAGTCCACT 59.889 55.000 0.00 0.00 44.66 4.00
3390 9767 0.984995 TCTCTCCTCTCCGACACTCA 59.015 55.000 0.00 0.00 0.00 3.41
3393 9770 0.391395 TCGTCTCTCCTCTCCGACAC 60.391 60.000 0.00 0.00 0.00 3.67
3403 9780 0.948678 CGATCCCTTCTCGTCTCTCC 59.051 60.000 0.00 0.00 0.00 3.71
3404 9781 0.948678 CCGATCCCTTCTCGTCTCTC 59.051 60.000 0.00 0.00 34.36 3.20
3405 9782 0.547075 TCCGATCCCTTCTCGTCTCT 59.453 55.000 0.00 0.00 34.36 3.10
3406 9783 0.948678 CTCCGATCCCTTCTCGTCTC 59.051 60.000 0.00 0.00 34.36 3.36
3407 9784 0.256464 ACTCCGATCCCTTCTCGTCT 59.744 55.000 0.00 0.00 34.36 4.18
3408 9785 1.104630 AACTCCGATCCCTTCTCGTC 58.895 55.000 0.00 0.00 34.36 4.20
3409 9786 0.818296 CAACTCCGATCCCTTCTCGT 59.182 55.000 0.00 0.00 34.36 4.18
3410 9787 0.103208 CCAACTCCGATCCCTTCTCG 59.897 60.000 0.00 0.00 35.92 4.04
3461 9838 9.532494 TGGATGGCTATAAATGCTTATTAACAT 57.468 29.630 0.00 0.00 0.00 2.71
3463 9840 9.626045 GTTGGATGGCTATAAATGCTTATTAAC 57.374 33.333 0.00 0.00 0.00 2.01
3464 9841 9.586732 AGTTGGATGGCTATAAATGCTTATTAA 57.413 29.630 0.00 0.00 0.00 1.40
3465 9842 9.586732 AAGTTGGATGGCTATAAATGCTTATTA 57.413 29.630 0.00 0.00 0.00 0.98
3466 9843 8.362639 CAAGTTGGATGGCTATAAATGCTTATT 58.637 33.333 0.00 0.00 0.00 1.40
3467 9844 7.039504 CCAAGTTGGATGGCTATAAATGCTTAT 60.040 37.037 17.60 0.00 40.96 1.73
3468 9845 6.265196 CCAAGTTGGATGGCTATAAATGCTTA 59.735 38.462 17.60 0.00 40.96 3.09
3469 9846 5.069516 CCAAGTTGGATGGCTATAAATGCTT 59.930 40.000 17.60 0.00 40.96 3.91
3471 9848 4.262164 CCCAAGTTGGATGGCTATAAATGC 60.262 45.833 24.06 0.00 40.96 3.56
3472 9849 4.895297 ACCCAAGTTGGATGGCTATAAATG 59.105 41.667 24.06 4.03 40.96 2.32
3473 9850 5.142806 ACCCAAGTTGGATGGCTATAAAT 57.857 39.130 24.06 0.00 40.96 1.40
3474 9851 4.601406 ACCCAAGTTGGATGGCTATAAA 57.399 40.909 24.06 0.00 40.96 1.40
3475 9852 4.229582 AGAACCCAAGTTGGATGGCTATAA 59.770 41.667 24.06 0.00 40.96 0.98
3476 9853 3.785887 AGAACCCAAGTTGGATGGCTATA 59.214 43.478 24.06 0.00 40.96 1.31
3477 9854 2.582636 AGAACCCAAGTTGGATGGCTAT 59.417 45.455 24.06 0.00 40.96 2.97
3478 9855 1.992557 AGAACCCAAGTTGGATGGCTA 59.007 47.619 24.06 0.00 40.96 3.93
3481 9858 2.584835 TGAGAACCCAAGTTGGATGG 57.415 50.000 24.06 9.25 40.96 3.51
3482 9859 7.880160 TTTATATGAGAACCCAAGTTGGATG 57.120 36.000 24.06 10.01 40.96 3.51
3483 9860 8.917088 CATTTTATATGAGAACCCAAGTTGGAT 58.083 33.333 24.06 11.59 40.96 3.41
3484 9861 7.147915 GCATTTTATATGAGAACCCAAGTTGGA 60.148 37.037 24.06 1.96 40.96 3.53
3485 9862 6.980397 GCATTTTATATGAGAACCCAAGTTGG 59.020 38.462 15.52 15.52 35.94 3.77
3486 9863 7.775120 AGCATTTTATATGAGAACCCAAGTTG 58.225 34.615 0.00 0.00 35.94 3.16
3487 9864 7.961326 AGCATTTTATATGAGAACCCAAGTT 57.039 32.000 0.00 0.00 39.54 2.66
3488 9865 7.961326 AAGCATTTTATATGAGAACCCAAGT 57.039 32.000 0.00 0.00 0.00 3.16
3490 9867 8.034215 CACAAAGCATTTTATATGAGAACCCAA 58.966 33.333 0.00 0.00 35.03 4.12
3491 9868 7.363705 CCACAAAGCATTTTATATGAGAACCCA 60.364 37.037 0.00 0.00 35.03 4.51
3492 9869 6.980397 CCACAAAGCATTTTATATGAGAACCC 59.020 38.462 0.00 0.00 35.03 4.11
3496 9873 7.560991 ACATCCCACAAAGCATTTTATATGAGA 59.439 33.333 0.00 0.00 35.03 3.27
3497 9874 7.719483 ACATCCCACAAAGCATTTTATATGAG 58.281 34.615 0.00 0.00 35.03 2.90
3499 9876 9.467258 CTAACATCCCACAAAGCATTTTATATG 57.533 33.333 0.00 0.00 35.03 1.78
3500 9877 9.200817 ACTAACATCCCACAAAGCATTTTATAT 57.799 29.630 0.00 0.00 35.03 0.86
3502 9879 7.397192 AGACTAACATCCCACAAAGCATTTTAT 59.603 33.333 0.00 0.00 35.03 1.40
3503 9880 6.719370 AGACTAACATCCCACAAAGCATTTTA 59.281 34.615 0.00 0.00 35.03 1.52
3504 9881 5.539955 AGACTAACATCCCACAAAGCATTTT 59.460 36.000 0.00 0.00 35.03 1.82
3505 9882 5.047802 CAGACTAACATCCCACAAAGCATTT 60.048 40.000 0.00 0.00 40.26 2.32
3506 9883 4.460382 CAGACTAACATCCCACAAAGCATT 59.540 41.667 0.00 0.00 0.00 3.56
3507 9884 4.012374 CAGACTAACATCCCACAAAGCAT 58.988 43.478 0.00 0.00 0.00 3.79
3508 9885 3.072330 TCAGACTAACATCCCACAAAGCA 59.928 43.478 0.00 0.00 0.00 3.91
3509 9886 3.674997 TCAGACTAACATCCCACAAAGC 58.325 45.455 0.00 0.00 0.00 3.51
3511 9888 5.762179 AGATCAGACTAACATCCCACAAA 57.238 39.130 0.00 0.00 0.00 2.83
3512 9889 7.437713 AATAGATCAGACTAACATCCCACAA 57.562 36.000 0.00 0.00 0.00 3.33
3514 9891 8.207545 AGAAAATAGATCAGACTAACATCCCAC 58.792 37.037 0.00 0.00 0.00 4.61
3515 9892 8.324191 AGAAAATAGATCAGACTAACATCCCA 57.676 34.615 0.00 0.00 0.00 4.37
3516 9893 9.620259 AAAGAAAATAGATCAGACTAACATCCC 57.380 33.333 0.00 0.00 0.00 3.85
3520 9897 9.155975 GCTCAAAGAAAATAGATCAGACTAACA 57.844 33.333 0.00 0.00 0.00 2.41
3521 9898 9.377312 AGCTCAAAGAAAATAGATCAGACTAAC 57.623 33.333 0.00 0.00 0.00 2.34
3523 9900 9.950496 AAAGCTCAAAGAAAATAGATCAGACTA 57.050 29.630 0.00 0.00 0.00 2.59
3524 9901 8.860780 AAAGCTCAAAGAAAATAGATCAGACT 57.139 30.769 0.00 0.00 0.00 3.24
3526 9903 9.071276 ACAAAAGCTCAAAGAAAATAGATCAGA 57.929 29.630 0.00 0.00 0.00 3.27
3527 9904 9.339492 GACAAAAGCTCAAAGAAAATAGATCAG 57.661 33.333 0.00 0.00 0.00 2.90
3528 9905 9.071276 AGACAAAAGCTCAAAGAAAATAGATCA 57.929 29.630 0.00 0.00 0.00 2.92
3530 9907 9.071276 TCAGACAAAAGCTCAAAGAAAATAGAT 57.929 29.630 0.00 0.00 0.00 1.98
3531 9908 8.450578 TCAGACAAAAGCTCAAAGAAAATAGA 57.549 30.769 0.00 0.00 0.00 1.98
3532 9909 9.688592 ATTCAGACAAAAGCTCAAAGAAAATAG 57.311 29.630 0.00 0.00 0.00 1.73
3534 9911 8.199449 TCATTCAGACAAAAGCTCAAAGAAAAT 58.801 29.630 0.00 0.00 0.00 1.82
3535 9912 7.546358 TCATTCAGACAAAAGCTCAAAGAAAA 58.454 30.769 0.00 0.00 0.00 2.29
3536 9913 7.099266 TCATTCAGACAAAAGCTCAAAGAAA 57.901 32.000 0.00 0.00 0.00 2.52
3537 9914 6.698008 TCATTCAGACAAAAGCTCAAAGAA 57.302 33.333 0.00 0.00 0.00 2.52
3540 9917 6.349611 GGCTATCATTCAGACAAAAGCTCAAA 60.350 38.462 0.00 0.00 0.00 2.69
3542 9919 4.637534 GGCTATCATTCAGACAAAAGCTCA 59.362 41.667 0.00 0.00 0.00 4.26
3543 9920 4.637534 TGGCTATCATTCAGACAAAAGCTC 59.362 41.667 0.00 0.00 0.00 4.09
3545 9922 4.970662 TGGCTATCATTCAGACAAAAGC 57.029 40.909 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.