Multiple sequence alignment - TraesCS5A01G337800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G337800 chr5A 100.000 3551 0 0 1 3551 546145059 546148609 0.000000e+00 6558.0
1 TraesCS5A01G337800 chr5A 92.346 1790 91 25 1161 2941 545984617 545986369 0.000000e+00 2505.0
2 TraesCS5A01G337800 chr5A 87.979 2113 147 33 406 2485 546153500 546155538 0.000000e+00 2396.0
3 TraesCS5A01G337800 chr5A 90.574 1464 128 5 1161 2621 545870669 545872125 0.000000e+00 1930.0
4 TraesCS5A01G337800 chr5A 89.595 173 17 1 3370 3542 546092747 546092918 5.970000e-53 219.0
5 TraesCS5A01G337800 chr5A 82.114 246 38 6 151 393 546153190 546153432 4.650000e-49 206.0
6 TraesCS5A01G337800 chr5A 89.209 139 14 1 3128 3265 136403611 136403473 4.710000e-39 172.0
7 TraesCS5A01G337800 chr5A 89.286 112 10 2 3435 3546 546095334 546095443 4.780000e-29 139.0
8 TraesCS5A01G337800 chr5A 89.286 84 9 0 151 234 592057079 592057162 4.850000e-19 106.0
9 TraesCS5A01G337800 chr5A 85.577 104 9 5 780 881 545984379 545984478 1.740000e-18 104.0
10 TraesCS5A01G337800 chr5A 89.333 75 8 0 151 225 592056306 592056380 1.050000e-15 95.3
11 TraesCS5A01G337800 chr5A 90.141 71 6 1 78 147 575371584 575371654 1.360000e-14 91.6
12 TraesCS5A01G337800 chr5D 92.857 2422 133 12 1161 3551 430445542 430447954 0.000000e+00 3478.0
13 TraesCS5A01G337800 chr5D 94.868 1325 68 0 1161 2485 430511645 430512969 0.000000e+00 2071.0
14 TraesCS5A01G337800 chr5D 90.496 1452 128 5 1161 2609 430164060 430165504 0.000000e+00 1908.0
15 TraesCS5A01G337800 chr5D 84.411 603 42 18 500 1073 430511027 430511606 2.410000e-151 545.0
16 TraesCS5A01G337800 chr5D 77.885 208 15 13 912 1105 430445334 430445524 2.260000e-17 100.0
17 TraesCS5A01G337800 chr5B 87.485 2493 197 50 404 2883 520036127 520038517 0.000000e+00 2769.0
18 TraesCS5A01G337800 chr5B 92.843 1467 96 5 1161 2621 519661044 519662507 0.000000e+00 2119.0
19 TraesCS5A01G337800 chr5B 94.038 1325 79 0 1161 2485 520046520 520047844 0.000000e+00 2010.0
20 TraesCS5A01G337800 chr5B 85.276 489 32 15 622 1073 520045988 520046473 5.370000e-128 468.0
21 TraesCS5A01G337800 chr5B 82.143 476 54 20 2429 2891 519895340 519895797 2.590000e-101 379.0
22 TraesCS5A01G337800 chr5B 88.087 277 27 4 3274 3546 520041472 520041746 1.230000e-84 324.0
23 TraesCS5A01G337800 chr5B 86.447 273 35 2 3274 3546 520031395 520031665 7.450000e-77 298.0
24 TraesCS5A01G337800 chr5B 84.472 161 24 1 3274 3434 519993189 519993348 1.320000e-34 158.0
25 TraesCS5A01G337800 chr5B 75.852 352 22 27 780 1105 519660712 519661026 1.730000e-23 121.0
26 TraesCS5A01G337800 chr4A 91.270 126 9 2 3143 3267 676913080 676912956 1.700000e-38 171.0
27 TraesCS5A01G337800 chr2A 88.489 139 15 1 3128 3265 535095444 535095582 2.190000e-37 167.0
28 TraesCS5A01G337800 chr2A 94.444 36 1 1 349 383 37040258 37040223 2.000000e-03 54.7
29 TraesCS5A01G337800 chr1D 90.476 126 12 0 3134 3259 18990709 18990834 2.190000e-37 167.0
30 TraesCS5A01G337800 chr1D 88.060 134 16 0 3132 3265 432404937 432404804 3.670000e-35 159.0
31 TraesCS5A01G337800 chr1D 87.313 134 16 1 3132 3265 296761623 296761491 6.140000e-33 152.0
32 TraesCS5A01G337800 chr1D 91.954 87 7 0 147 233 208754840 208754754 4.810000e-24 122.0
33 TraesCS5A01G337800 chr1D 86.364 88 12 0 147 234 462469767 462469680 2.920000e-16 97.1
34 TraesCS5A01G337800 chr1D 87.143 70 9 0 80 149 457952867 457952798 2.940000e-11 80.5
35 TraesCS5A01G337800 chr3A 87.324 142 13 5 3128 3266 487478653 487478792 1.320000e-34 158.0
36 TraesCS5A01G337800 chr3A 92.308 65 4 1 79 142 467416052 467416116 1.360000e-14 91.6
37 TraesCS5A01G337800 chr2D 86.014 143 14 3 3128 3265 168623144 168623285 7.940000e-32 148.0
38 TraesCS5A01G337800 chr2D 81.935 155 23 5 246 398 480128717 480128868 3.720000e-25 126.0
39 TraesCS5A01G337800 chr2D 86.905 84 7 4 151 232 37206631 37206550 1.360000e-14 91.6
40 TraesCS5A01G337800 chr3D 86.667 90 10 2 147 235 348920079 348920167 8.110000e-17 99.0
41 TraesCS5A01G337800 chr1A 91.549 71 6 0 147 217 554276984 554277054 8.110000e-17 99.0
42 TraesCS5A01G337800 chr1A 91.549 71 6 0 147 217 554296393 554296323 8.110000e-17 99.0
43 TraesCS5A01G337800 chr1A 89.831 59 4 1 86 142 589961986 589962044 1.370000e-09 75.0
44 TraesCS5A01G337800 chr7D 88.732 71 7 1 78 147 470275442 470275512 6.320000e-13 86.1
45 TraesCS5A01G337800 chr2B 79.646 113 18 3 288 398 56329064 56328955 3.800000e-10 76.8
46 TraesCS5A01G337800 chr2B 89.474 57 6 0 342 398 56427298 56427242 4.920000e-09 73.1
47 TraesCS5A01G337800 chr3B 95.122 41 1 1 2979 3019 526280529 526280490 2.960000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G337800 chr5A 546145059 546148609 3550 False 6558.0 6558 100.0000 1 3551 1 chr5A.!!$F2 3550
1 TraesCS5A01G337800 chr5A 545870669 545872125 1456 False 1930.0 1930 90.5740 1161 2621 1 chr5A.!!$F1 1460
2 TraesCS5A01G337800 chr5A 545984379 545986369 1990 False 1304.5 2505 88.9615 780 2941 2 chr5A.!!$F4 2161
3 TraesCS5A01G337800 chr5A 546153190 546155538 2348 False 1301.0 2396 85.0465 151 2485 2 chr5A.!!$F6 2334
4 TraesCS5A01G337800 chr5D 430164060 430165504 1444 False 1908.0 1908 90.4960 1161 2609 1 chr5D.!!$F1 1448
5 TraesCS5A01G337800 chr5D 430445334 430447954 2620 False 1789.0 3478 85.3710 912 3551 2 chr5D.!!$F2 2639
6 TraesCS5A01G337800 chr5D 430511027 430512969 1942 False 1308.0 2071 89.6395 500 2485 2 chr5D.!!$F3 1985
7 TraesCS5A01G337800 chr5B 520036127 520041746 5619 False 1546.5 2769 87.7860 404 3546 2 chr5B.!!$F5 3142
8 TraesCS5A01G337800 chr5B 520045988 520047844 1856 False 1239.0 2010 89.6570 622 2485 2 chr5B.!!$F6 1863
9 TraesCS5A01G337800 chr5B 519660712 519662507 1795 False 1120.0 2119 84.3475 780 2621 2 chr5B.!!$F4 1841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 508 0.035439 TCGGATTCCAGCAAAGTCCC 60.035 55.0 3.09 0.0 0.00 4.46 F
1132 1268 0.038251 CGGTCTAAGCTCAGTGCACA 60.038 55.0 21.04 0.0 45.94 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2119 2255 1.005037 GTCGTGGATCACCTGTGCA 60.005 57.895 0.0 0.0 37.04 4.57 R
3067 4191 1.002134 ATTGGGCTCAGTGGAACCG 60.002 57.895 0.0 0.0 37.80 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.781934 ACTATATGTCCACCAGAAAAGGC 58.218 43.478 0.00 0.00 0.00 4.35
23 24 3.737559 ATATGTCCACCAGAAAAGGCA 57.262 42.857 0.00 0.00 0.00 4.75
24 25 2.380064 ATGTCCACCAGAAAAGGCAA 57.620 45.000 0.00 0.00 0.00 4.52
25 26 2.380064 TGTCCACCAGAAAAGGCAAT 57.620 45.000 0.00 0.00 0.00 3.56
26 27 2.676748 TGTCCACCAGAAAAGGCAATT 58.323 42.857 0.00 0.00 0.00 2.32
27 28 3.037549 TGTCCACCAGAAAAGGCAATTT 58.962 40.909 0.00 0.00 0.00 1.82
28 29 3.181467 TGTCCACCAGAAAAGGCAATTTG 60.181 43.478 0.00 0.00 0.00 2.32
29 30 3.069443 GTCCACCAGAAAAGGCAATTTGA 59.931 43.478 0.00 0.00 0.00 2.69
30 31 3.708631 TCCACCAGAAAAGGCAATTTGAA 59.291 39.130 0.00 0.00 0.00 2.69
31 32 4.163078 TCCACCAGAAAAGGCAATTTGAAA 59.837 37.500 0.00 0.00 0.00 2.69
32 33 5.065235 CCACCAGAAAAGGCAATTTGAAAT 58.935 37.500 0.00 0.00 0.00 2.17
33 34 5.532032 CCACCAGAAAAGGCAATTTGAAATT 59.468 36.000 0.00 0.00 0.00 1.82
34 35 6.293571 CCACCAGAAAAGGCAATTTGAAATTC 60.294 38.462 0.00 0.00 0.00 2.17
35 36 6.260493 CACCAGAAAAGGCAATTTGAAATTCA 59.740 34.615 0.00 0.00 0.00 2.57
36 37 6.827762 ACCAGAAAAGGCAATTTGAAATTCAA 59.172 30.769 4.03 4.03 34.03 2.69
50 51 6.924913 TGAAATTCAAATACATGGGTTCCA 57.075 33.333 0.00 0.00 38.19 3.53
51 52 7.493499 TGAAATTCAAATACATGGGTTCCAT 57.507 32.000 0.00 0.00 46.37 3.41
52 53 8.601047 TGAAATTCAAATACATGGGTTCCATA 57.399 30.769 0.00 0.00 43.15 2.74
53 54 8.694540 TGAAATTCAAATACATGGGTTCCATAG 58.305 33.333 0.00 0.00 43.15 2.23
54 55 6.655078 ATTCAAATACATGGGTTCCATAGC 57.345 37.500 0.00 0.00 43.15 2.97
55 56 4.133820 TCAAATACATGGGTTCCATAGCG 58.866 43.478 0.00 0.00 43.15 4.26
56 57 2.185004 ATACATGGGTTCCATAGCGC 57.815 50.000 0.00 0.00 43.15 5.92
57 58 0.833949 TACATGGGTTCCATAGCGCA 59.166 50.000 11.47 0.00 43.15 6.09
58 59 0.748005 ACATGGGTTCCATAGCGCAC 60.748 55.000 11.47 0.00 43.15 5.34
59 60 0.747644 CATGGGTTCCATAGCGCACA 60.748 55.000 11.47 0.00 43.15 4.57
60 61 0.748005 ATGGGTTCCATAGCGCACAC 60.748 55.000 11.47 0.00 43.19 3.82
61 62 2.112815 GGGTTCCATAGCGCACACC 61.113 63.158 11.47 5.64 0.00 4.16
62 63 2.461110 GGTTCCATAGCGCACACCG 61.461 63.158 11.47 0.00 40.75 4.94
63 64 2.125310 TTCCATAGCGCACACCGG 60.125 61.111 11.47 0.00 37.44 5.28
64 65 2.651105 TTCCATAGCGCACACCGGA 61.651 57.895 9.46 4.93 37.44 5.14
65 66 1.966901 TTCCATAGCGCACACCGGAT 61.967 55.000 9.46 0.00 37.44 4.18
66 67 1.956170 CCATAGCGCACACCGGATC 60.956 63.158 9.46 0.00 37.44 3.36
67 68 1.227234 CATAGCGCACACCGGATCA 60.227 57.895 9.46 0.00 37.44 2.92
68 69 1.227263 ATAGCGCACACCGGATCAC 60.227 57.895 9.46 0.00 37.44 3.06
69 70 1.955495 ATAGCGCACACCGGATCACA 61.955 55.000 9.46 0.00 37.44 3.58
70 71 1.955495 TAGCGCACACCGGATCACAT 61.955 55.000 9.46 0.00 37.44 3.21
71 72 2.813179 GCGCACACCGGATCACATC 61.813 63.158 9.46 0.00 37.44 3.06
72 73 2.173669 CGCACACCGGATCACATCC 61.174 63.158 9.46 0.00 46.22 3.51
79 80 2.029666 GGATCACATCCTCGGCCG 59.970 66.667 22.12 22.12 46.19 6.13
80 81 2.498941 GGATCACATCCTCGGCCGA 61.499 63.158 29.03 29.03 46.19 5.54
81 82 1.668294 GATCACATCCTCGGCCGAT 59.332 57.895 31.19 11.95 0.00 4.18
82 83 0.389166 GATCACATCCTCGGCCGATC 60.389 60.000 31.19 17.05 0.00 3.69
83 84 2.147315 ATCACATCCTCGGCCGATCG 62.147 60.000 31.19 21.71 0.00 3.69
84 85 4.286320 ACATCCTCGGCCGATCGC 62.286 66.667 31.19 5.23 0.00 4.58
85 86 4.284860 CATCCTCGGCCGATCGCA 62.285 66.667 31.19 13.17 40.31 5.10
86 87 3.536917 ATCCTCGGCCGATCGCAA 61.537 61.111 31.19 12.78 40.31 4.85
87 88 3.792053 ATCCTCGGCCGATCGCAAC 62.792 63.158 31.19 0.62 40.31 4.17
89 90 4.812476 CTCGGCCGATCGCAACCA 62.812 66.667 31.19 2.04 40.31 3.67
90 91 4.380781 TCGGCCGATCGCAACCAA 62.381 61.111 27.28 0.00 40.31 3.67
91 92 3.864686 CGGCCGATCGCAACCAAG 61.865 66.667 24.07 0.00 40.31 3.61
92 93 2.435938 GGCCGATCGCAACCAAGA 60.436 61.111 10.32 0.00 40.31 3.02
93 94 2.038269 GGCCGATCGCAACCAAGAA 61.038 57.895 10.32 0.00 40.31 2.52
94 95 1.425428 GCCGATCGCAACCAAGAAG 59.575 57.895 10.32 0.00 37.47 2.85
95 96 1.019278 GCCGATCGCAACCAAGAAGA 61.019 55.000 10.32 0.00 37.47 2.87
96 97 1.002366 CCGATCGCAACCAAGAAGAG 58.998 55.000 10.32 0.00 0.00 2.85
97 98 1.002366 CGATCGCAACCAAGAAGAGG 58.998 55.000 0.26 0.00 0.00 3.69
98 99 0.729690 GATCGCAACCAAGAAGAGGC 59.270 55.000 0.00 0.00 0.00 4.70
99 100 0.036732 ATCGCAACCAAGAAGAGGCA 59.963 50.000 0.00 0.00 0.00 4.75
100 101 0.179032 TCGCAACCAAGAAGAGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
101 102 0.239347 CGCAACCAAGAAGAGGCAAG 59.761 55.000 0.00 0.00 0.00 4.01
102 103 1.322442 GCAACCAAGAAGAGGCAAGT 58.678 50.000 0.00 0.00 0.00 3.16
103 104 2.504367 GCAACCAAGAAGAGGCAAGTA 58.496 47.619 0.00 0.00 0.00 2.24
104 105 3.084786 GCAACCAAGAAGAGGCAAGTAT 58.915 45.455 0.00 0.00 0.00 2.12
105 106 3.119708 GCAACCAAGAAGAGGCAAGTATG 60.120 47.826 0.00 0.00 0.00 2.39
123 124 7.584987 CAAGTATGCTTAGTATTTACATGCCC 58.415 38.462 0.00 0.00 32.87 5.36
124 125 5.932303 AGTATGCTTAGTATTTACATGCCCG 59.068 40.000 0.00 0.00 0.00 6.13
125 126 4.409718 TGCTTAGTATTTACATGCCCGA 57.590 40.909 0.00 0.00 0.00 5.14
126 127 4.968259 TGCTTAGTATTTACATGCCCGAT 58.032 39.130 0.00 0.00 0.00 4.18
127 128 4.994852 TGCTTAGTATTTACATGCCCGATC 59.005 41.667 0.00 0.00 0.00 3.69
128 129 4.994852 GCTTAGTATTTACATGCCCGATCA 59.005 41.667 0.00 0.00 0.00 2.92
129 130 5.107065 GCTTAGTATTTACATGCCCGATCAC 60.107 44.000 0.00 0.00 0.00 3.06
130 131 4.415881 AGTATTTACATGCCCGATCACA 57.584 40.909 0.00 0.00 0.00 3.58
131 132 4.776349 AGTATTTACATGCCCGATCACAA 58.224 39.130 0.00 0.00 0.00 3.33
132 133 5.189928 AGTATTTACATGCCCGATCACAAA 58.810 37.500 0.00 0.00 0.00 2.83
133 134 5.650266 AGTATTTACATGCCCGATCACAAAA 59.350 36.000 0.00 0.00 0.00 2.44
134 135 4.433186 TTTACATGCCCGATCACAAAAG 57.567 40.909 0.00 0.00 0.00 2.27
135 136 2.198827 ACATGCCCGATCACAAAAGA 57.801 45.000 0.00 0.00 0.00 2.52
136 137 2.513753 ACATGCCCGATCACAAAAGAA 58.486 42.857 0.00 0.00 0.00 2.52
137 138 3.091545 ACATGCCCGATCACAAAAGAAT 58.908 40.909 0.00 0.00 0.00 2.40
138 139 4.269183 ACATGCCCGATCACAAAAGAATA 58.731 39.130 0.00 0.00 0.00 1.75
139 140 4.889409 ACATGCCCGATCACAAAAGAATAT 59.111 37.500 0.00 0.00 0.00 1.28
140 141 5.009010 ACATGCCCGATCACAAAAGAATATC 59.991 40.000 0.00 0.00 0.00 1.63
141 142 4.522114 TGCCCGATCACAAAAGAATATCA 58.478 39.130 0.00 0.00 0.00 2.15
142 143 4.946772 TGCCCGATCACAAAAGAATATCAA 59.053 37.500 0.00 0.00 0.00 2.57
143 144 5.163663 TGCCCGATCACAAAAGAATATCAAC 60.164 40.000 0.00 0.00 0.00 3.18
144 145 5.733373 GCCCGATCACAAAAGAATATCAACC 60.733 44.000 0.00 0.00 0.00 3.77
145 146 5.221048 CCCGATCACAAAAGAATATCAACCC 60.221 44.000 0.00 0.00 0.00 4.11
146 147 5.501715 CGATCACAAAAGAATATCAACCCG 58.498 41.667 0.00 0.00 0.00 5.28
147 148 5.504010 CGATCACAAAAGAATATCAACCCGG 60.504 44.000 0.00 0.00 0.00 5.73
148 149 3.442273 TCACAAAAGAATATCAACCCGGC 59.558 43.478 0.00 0.00 0.00 6.13
149 150 2.422127 ACAAAAGAATATCAACCCGGCG 59.578 45.455 0.00 0.00 0.00 6.46
163 164 0.179134 CCGGCGTTCTTCTCTTCGAT 60.179 55.000 6.01 0.00 0.00 3.59
165 166 1.467543 CGGCGTTCTTCTCTTCGATCA 60.468 52.381 0.00 0.00 0.00 2.92
168 169 2.537625 GCGTTCTTCTCTTCGATCATGG 59.462 50.000 0.00 0.00 0.00 3.66
182 183 1.956869 TCATGGCCCTCTTCTCTTCA 58.043 50.000 0.00 0.00 0.00 3.02
184 185 2.238144 TCATGGCCCTCTTCTCTTCAAG 59.762 50.000 0.00 0.00 0.00 3.02
206 207 1.517475 GAGCTTCTTCTCGGTCGCC 60.517 63.158 0.00 0.00 0.00 5.54
213 214 0.867753 CTTCTCGGTCGCCTTCATCG 60.868 60.000 0.00 0.00 0.00 3.84
243 244 1.674057 CTCTCCGCCACCTTCAAGT 59.326 57.895 0.00 0.00 0.00 3.16
252 253 2.544486 GCCACCTTCAAGTTTGAGCTTG 60.544 50.000 1.66 1.66 45.18 4.01
267 268 0.392336 GCTTGATGCTCGGATCCTCT 59.608 55.000 10.75 0.00 38.95 3.69
270 271 1.621992 TGATGCTCGGATCCTCTACC 58.378 55.000 10.75 0.00 0.00 3.18
272 273 2.175202 GATGCTCGGATCCTCTACCAT 58.825 52.381 10.75 5.18 0.00 3.55
273 274 1.621992 TGCTCGGATCCTCTACCATC 58.378 55.000 10.75 0.00 0.00 3.51
275 276 2.243810 GCTCGGATCCTCTACCATCTT 58.756 52.381 10.75 0.00 0.00 2.40
277 278 3.761897 CTCGGATCCTCTACCATCTTCT 58.238 50.000 10.75 0.00 0.00 2.85
286 287 3.703556 CTCTACCATCTTCTTCTCCAGCA 59.296 47.826 0.00 0.00 0.00 4.41
287 288 4.096681 TCTACCATCTTCTTCTCCAGCAA 58.903 43.478 0.00 0.00 0.00 3.91
289 290 2.026449 ACCATCTTCTTCTCCAGCAAGG 60.026 50.000 0.00 0.00 39.47 3.61
300 301 1.984570 CAGCAAGGTCTCCTCCGGA 60.985 63.158 2.93 2.93 30.89 5.14
308 309 1.075301 TCTCCTCCGGATCCATGCA 60.075 57.895 13.41 0.00 0.00 3.96
309 310 1.070445 CTCCTCCGGATCCATGCAC 59.930 63.158 13.41 0.00 0.00 4.57
310 311 1.383109 TCCTCCGGATCCATGCACT 60.383 57.895 13.41 0.00 0.00 4.40
313 314 2.903855 CCGGATCCATGCACTGGC 60.904 66.667 13.41 0.00 45.52 4.85
314 315 3.274586 CGGATCCATGCACTGGCG 61.275 66.667 13.41 5.27 45.52 5.69
328 329 3.868985 GGCGGCGGGAGGGAATAA 61.869 66.667 9.78 0.00 0.00 1.40
329 330 2.280865 GCGGCGGGAGGGAATAAG 60.281 66.667 9.78 0.00 0.00 1.73
334 335 1.705873 GCGGGAGGGAATAAGAGAGA 58.294 55.000 0.00 0.00 0.00 3.10
354 355 1.787796 GGGGGAAGGGTGGGAATTT 59.212 57.895 0.00 0.00 0.00 1.82
357 358 0.116342 GGGAAGGGTGGGAATTTGGT 59.884 55.000 0.00 0.00 0.00 3.67
365 366 0.322456 TGGGAATTTGGTGGAGAGCG 60.322 55.000 0.00 0.00 0.00 5.03
366 367 1.032114 GGGAATTTGGTGGAGAGCGG 61.032 60.000 0.00 0.00 0.00 5.52
367 368 1.657751 GGAATTTGGTGGAGAGCGGC 61.658 60.000 0.00 0.00 0.00 6.53
369 370 2.463589 AATTTGGTGGAGAGCGGCGA 62.464 55.000 12.98 0.00 0.00 5.54
382 385 0.375106 GCGGCGAGATGGAAGAAAAG 59.625 55.000 12.98 0.00 0.00 2.27
386 389 2.675348 GGCGAGATGGAAGAAAAGAGTG 59.325 50.000 0.00 0.00 0.00 3.51
387 390 3.589988 GCGAGATGGAAGAAAAGAGTGA 58.410 45.455 0.00 0.00 0.00 3.41
393 396 7.256494 AGATGGAAGAAAAGAGTGAGAGATT 57.744 36.000 0.00 0.00 0.00 2.40
394 397 7.688343 AGATGGAAGAAAAGAGTGAGAGATTT 58.312 34.615 0.00 0.00 0.00 2.17
395 398 8.162746 AGATGGAAGAAAAGAGTGAGAGATTTT 58.837 33.333 0.00 0.00 0.00 1.82
396 399 7.502120 TGGAAGAAAAGAGTGAGAGATTTTG 57.498 36.000 0.00 0.00 0.00 2.44
397 400 6.016777 TGGAAGAAAAGAGTGAGAGATTTTGC 60.017 38.462 0.00 0.00 0.00 3.68
398 401 5.956068 AGAAAAGAGTGAGAGATTTTGCC 57.044 39.130 0.00 0.00 0.00 4.52
399 402 5.380043 AGAAAAGAGTGAGAGATTTTGCCA 58.620 37.500 0.00 0.00 0.00 4.92
400 403 5.240403 AGAAAAGAGTGAGAGATTTTGCCAC 59.760 40.000 0.00 0.00 0.00 5.01
416 474 1.472662 CCACAAGGGTGTCGGAGTCT 61.473 60.000 0.00 0.00 43.71 3.24
431 489 2.353803 GGAGTCTTACGTGGCTCATGTT 60.354 50.000 9.42 0.00 35.12 2.71
436 494 0.821517 TACGTGGCTCATGTTCGGAT 59.178 50.000 0.00 0.00 35.12 4.18
440 498 0.617935 TGGCTCATGTTCGGATTCCA 59.382 50.000 3.09 0.00 0.00 3.53
447 505 2.270352 TGTTCGGATTCCAGCAAAGT 57.730 45.000 3.09 0.00 0.00 2.66
448 506 2.151202 TGTTCGGATTCCAGCAAAGTC 58.849 47.619 3.09 0.00 0.00 3.01
449 507 1.468914 GTTCGGATTCCAGCAAAGTCC 59.531 52.381 3.09 0.00 0.00 3.85
450 508 0.035439 TCGGATTCCAGCAAAGTCCC 60.035 55.000 3.09 0.00 0.00 4.46
451 509 1.032114 CGGATTCCAGCAAAGTCCCC 61.032 60.000 3.09 0.00 0.00 4.81
452 510 0.332972 GGATTCCAGCAAAGTCCCCT 59.667 55.000 0.00 0.00 0.00 4.79
457 515 2.941583 AGCAAAGTCCCCTCCCCC 60.942 66.667 0.00 0.00 0.00 5.40
473 533 1.076727 CCCCTCCCCTGTTTGGTTC 59.923 63.158 0.00 0.00 0.00 3.62
495 555 3.186909 GACTTTGCGGGAAAATTATGGC 58.813 45.455 0.00 0.00 0.00 4.40
515 575 0.394080 CCGGACTACTTCGAGGACCT 60.394 60.000 0.00 0.00 0.00 3.85
523 583 1.759459 CTTCGAGGACCTATGGGGGC 61.759 65.000 0.00 0.00 44.23 5.80
555 615 1.594293 CTTGCGGTGTTCGGACAGT 60.594 57.895 0.00 0.00 39.39 3.55
560 620 2.248431 GTGTTCGGACAGTTGCGC 59.752 61.111 0.00 0.00 36.20 6.09
572 632 3.542676 TTGCGCCCCGACGGATAT 61.543 61.111 17.49 0.00 31.88 1.63
575 635 2.258591 CGCCCCGACGGATATGAG 59.741 66.667 17.49 0.00 0.00 2.90
577 637 1.239296 CGCCCCGACGGATATGAGTA 61.239 60.000 17.49 0.00 0.00 2.59
589 650 4.341235 CGGATATGAGTAGTTTGAGGGTCA 59.659 45.833 0.00 0.00 0.00 4.02
592 653 2.325484 TGAGTAGTTTGAGGGTCAGCA 58.675 47.619 0.00 0.00 0.00 4.41
599 660 0.329261 TTGAGGGTCAGCATTGGAGG 59.671 55.000 0.00 0.00 0.00 4.30
604 665 3.743017 TCAGCATTGGAGGGGCCC 61.743 66.667 17.12 17.12 34.97 5.80
605 666 3.747579 CAGCATTGGAGGGGCCCT 61.748 66.667 29.30 29.30 36.03 5.19
606 667 2.044450 AGCATTGGAGGGGCCCTA 59.956 61.111 28.92 11.35 31.76 3.53
607 668 1.622442 AGCATTGGAGGGGCCCTAA 60.622 57.895 28.92 18.61 31.76 2.69
608 669 1.221213 AGCATTGGAGGGGCCCTAAA 61.221 55.000 28.92 23.32 31.76 1.85
609 670 0.105504 GCATTGGAGGGGCCCTAAAT 60.106 55.000 28.92 24.52 31.76 1.40
610 671 1.146982 GCATTGGAGGGGCCCTAAATA 59.853 52.381 28.92 12.02 31.76 1.40
611 672 2.425683 GCATTGGAGGGGCCCTAAATAA 60.426 50.000 28.92 18.08 31.76 1.40
612 673 3.500343 CATTGGAGGGGCCCTAAATAAG 58.500 50.000 28.92 13.35 31.76 1.73
613 674 0.850784 TGGAGGGGCCCTAAATAAGC 59.149 55.000 28.92 11.29 31.76 3.09
614 675 0.850784 GGAGGGGCCCTAAATAAGCA 59.149 55.000 28.92 0.00 31.76 3.91
615 676 1.216930 GGAGGGGCCCTAAATAAGCAA 59.783 52.381 28.92 0.00 31.76 3.91
616 677 2.358826 GGAGGGGCCCTAAATAAGCAAA 60.359 50.000 28.92 0.00 31.76 3.68
617 678 2.693591 GAGGGGCCCTAAATAAGCAAAC 59.306 50.000 28.92 4.08 31.76 2.93
618 679 2.314852 AGGGGCCCTAAATAAGCAAACT 59.685 45.455 27.62 1.46 28.47 2.66
619 680 2.693591 GGGGCCCTAAATAAGCAAACTC 59.306 50.000 24.38 0.00 0.00 3.01
620 681 3.361786 GGGCCCTAAATAAGCAAACTCA 58.638 45.455 17.04 0.00 0.00 3.41
660 729 2.580783 TGGGGCTAGCCAGTATTTTCTT 59.419 45.455 34.09 0.00 37.98 2.52
757 827 2.766970 TTGTAAAGCACGCAAAGGAC 57.233 45.000 0.00 0.00 0.00 3.85
767 838 2.354510 CACGCAAAGGACTGAAACAGAA 59.645 45.455 5.76 0.00 35.18 3.02
810 882 2.074547 TGCACGTTCTAGGTAACAGC 57.925 50.000 0.00 0.00 41.41 4.40
864 939 3.647771 GGGCCGGGTCCAAGTCTT 61.648 66.667 14.16 0.00 0.00 3.01
895 970 7.519927 TCAACTACACTAATTAACAAGGGGTT 58.480 34.615 0.00 0.00 43.62 4.11
947 1031 2.879907 CTACCGTTTCCCGCGAGA 59.120 61.111 8.23 0.00 34.38 4.04
948 1032 1.515736 CTACCGTTTCCCGCGAGAC 60.516 63.158 8.23 0.00 34.38 3.36
956 1054 0.391130 TTCCCGCGAGACTTCCAATG 60.391 55.000 8.23 0.00 0.00 2.82
1025 1147 1.202770 AGTACAAGACCGCAAAGCCTT 60.203 47.619 0.00 0.00 0.00 4.35
1130 1266 0.898326 TCCGGTCTAAGCTCAGTGCA 60.898 55.000 0.00 0.00 45.94 4.57
1131 1267 0.737715 CCGGTCTAAGCTCAGTGCAC 60.738 60.000 9.40 9.40 45.94 4.57
1132 1268 0.038251 CGGTCTAAGCTCAGTGCACA 60.038 55.000 21.04 0.00 45.94 4.57
1133 1269 1.719600 GGTCTAAGCTCAGTGCACAG 58.280 55.000 21.04 11.93 45.94 3.66
1134 1270 1.074752 GTCTAAGCTCAGTGCACAGC 58.925 55.000 21.04 19.78 45.94 4.40
1135 1271 0.681175 TCTAAGCTCAGTGCACAGCA 59.319 50.000 25.74 9.71 45.94 4.41
1138 1274 1.450531 AAGCTCAGTGCACAGCAACC 61.451 55.000 25.74 7.79 45.94 3.77
1139 1275 2.188829 GCTCAGTGCACAGCAACCA 61.189 57.895 21.04 0.00 41.47 3.67
1140 1276 1.947013 CTCAGTGCACAGCAACCAG 59.053 57.895 21.04 0.00 41.47 4.00
1141 1277 0.816825 CTCAGTGCACAGCAACCAGT 60.817 55.000 21.04 0.00 41.47 4.00
1142 1278 0.394216 TCAGTGCACAGCAACCAGTT 60.394 50.000 21.04 0.00 41.47 3.16
1143 1279 1.134250 TCAGTGCACAGCAACCAGTTA 60.134 47.619 21.04 0.00 41.47 2.24
1144 1280 1.265095 CAGTGCACAGCAACCAGTTAG 59.735 52.381 21.04 0.00 41.47 2.34
1145 1281 1.134098 AGTGCACAGCAACCAGTTAGT 60.134 47.619 21.04 0.00 41.47 2.24
1146 1282 2.104111 AGTGCACAGCAACCAGTTAGTA 59.896 45.455 21.04 0.00 41.47 1.82
1147 1283 2.875933 GTGCACAGCAACCAGTTAGTAA 59.124 45.455 13.17 0.00 41.47 2.24
1148 1284 3.502211 GTGCACAGCAACCAGTTAGTAAT 59.498 43.478 13.17 0.00 41.47 1.89
1149 1285 4.693566 GTGCACAGCAACCAGTTAGTAATA 59.306 41.667 13.17 0.00 41.47 0.98
1150 1286 4.935205 TGCACAGCAACCAGTTAGTAATAG 59.065 41.667 0.00 0.00 34.76 1.73
1151 1287 4.201822 GCACAGCAACCAGTTAGTAATAGC 60.202 45.833 0.00 0.00 0.00 2.97
1152 1288 5.178797 CACAGCAACCAGTTAGTAATAGCT 58.821 41.667 0.00 0.00 0.00 3.32
1153 1289 6.338146 CACAGCAACCAGTTAGTAATAGCTA 58.662 40.000 0.00 0.00 0.00 3.32
1154 1290 6.986817 CACAGCAACCAGTTAGTAATAGCTAT 59.013 38.462 0.00 0.00 0.00 2.97
1155 1291 8.141909 CACAGCAACCAGTTAGTAATAGCTATA 58.858 37.037 6.68 0.00 0.00 1.31
1156 1292 8.871125 ACAGCAACCAGTTAGTAATAGCTATAT 58.129 33.333 6.68 0.00 0.00 0.86
1157 1293 9.712305 CAGCAACCAGTTAGTAATAGCTATATT 57.288 33.333 6.68 0.00 35.71 1.28
1158 1294 9.930693 AGCAACCAGTTAGTAATAGCTATATTC 57.069 33.333 6.68 0.92 33.58 1.75
1159 1295 8.861101 GCAACCAGTTAGTAATAGCTATATTCG 58.139 37.037 6.68 0.00 33.58 3.34
1177 1313 1.026718 CGGCAATGGAGGTCAAGGTC 61.027 60.000 0.00 0.00 0.00 3.85
1213 1349 1.302752 CAAGCCTGCCTACAGTGCA 60.303 57.895 8.52 0.00 42.81 4.57
1777 1913 2.121645 CCGCAACGGGGAGTACTAT 58.878 57.895 0.00 0.00 44.15 2.12
1865 2001 0.868406 GCACTTCACCAAGGACTTCG 59.132 55.000 0.00 0.00 33.37 3.79
2305 2441 1.067776 CCGTTCTACGAGCTGGACTTT 60.068 52.381 1.44 0.00 46.05 2.66
2432 2568 3.197983 ACCCTTATTCCAAGAGAACCTCG 59.802 47.826 0.00 0.00 37.29 4.63
2436 2572 5.337652 CCTTATTCCAAGAGAACCTCGAAGT 60.338 44.000 0.00 0.00 37.29 3.01
2459 2595 4.518970 TGTTCAAAGAATGTTGCTACTCCC 59.481 41.667 0.00 0.00 0.00 4.30
2670 2816 9.967245 CAAATTCGATTATACACCAATATACCG 57.033 33.333 0.00 0.00 0.00 4.02
2822 2970 1.001633 GGAAACTGCGGGACTCTGTTA 59.998 52.381 0.00 0.00 34.29 2.41
2970 3122 5.633473 ACTAGTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
2971 3123 5.594777 ACTAGTCCCTCCATCCCATAATAG 58.405 45.833 0.00 0.00 0.00 1.73
2972 3124 4.510303 AGTCCCTCCATCCCATAATAGT 57.490 45.455 0.00 0.00 0.00 2.12
2974 3126 3.910627 GTCCCTCCATCCCATAATAGTGT 59.089 47.826 0.00 0.00 0.00 3.55
2975 3127 4.020128 GTCCCTCCATCCCATAATAGTGTC 60.020 50.000 0.00 0.00 0.00 3.67
2976 3128 3.909995 CCCTCCATCCCATAATAGTGTCA 59.090 47.826 0.00 0.00 0.00 3.58
2977 3129 4.263068 CCCTCCATCCCATAATAGTGTCAC 60.263 50.000 0.00 0.00 0.00 3.67
2990 3167 3.530265 AGTGTCACAAAACGTCCTACA 57.470 42.857 5.62 0.00 0.00 2.74
2999 3176 5.588648 CACAAAACGTCCTACATTATGGGAT 59.411 40.000 0.00 0.00 40.69 3.85
3001 3178 5.623956 AAACGTCCTACATTATGGGATGA 57.376 39.130 13.96 0.00 45.81 2.92
3009 3186 5.785423 CCTACATTATGGGATGAAGGGAGTA 59.215 44.000 0.00 0.00 0.00 2.59
3010 3187 6.272324 CCTACATTATGGGATGAAGGGAGTAA 59.728 42.308 0.00 0.00 0.00 2.24
3011 3188 6.786843 ACATTATGGGATGAAGGGAGTAAT 57.213 37.500 0.00 0.00 0.00 1.89
3012 3189 7.166758 ACATTATGGGATGAAGGGAGTAATT 57.833 36.000 0.00 0.00 0.00 1.40
3067 4191 3.541713 AGCGCCCGGGAAGATCTC 61.542 66.667 29.31 2.60 0.00 2.75
3095 4219 2.579860 ACTGAGCCCAATCTTGAAGGAT 59.420 45.455 0.00 0.00 0.00 3.24
3116 4240 8.443953 AGGATACAATTATCTGAAAGAGTTGC 57.556 34.615 0.00 0.00 45.31 4.17
3155 4280 5.049198 ACTTTGTGACTACGTAGAATGTCGA 60.049 40.000 28.74 10.68 32.64 4.20
3166 4291 1.400846 AGAATGTCGAGATGTACGCGT 59.599 47.619 19.17 19.17 42.08 6.01
3185 4310 4.143762 CGCGTGAAACATTTTGTCAGAATG 60.144 41.667 13.18 13.18 39.73 2.67
3255 4820 4.821805 GCATATGCTCCTAGGTGCTAAAAA 59.178 41.667 30.36 14.73 38.21 1.94
3278 6105 1.613520 CCCTCTCGTCCACTAGACACA 60.614 57.143 0.00 0.00 46.69 3.72
3442 6273 9.169592 GCCTTACAAAAGTATTGGTTATGACTA 57.830 33.333 0.00 0.00 0.00 2.59
3481 6312 6.696411 TCTCCAAACACAAAAACTGTTTCAT 58.304 32.000 6.20 0.00 39.34 2.57
3498 6329 5.473162 TGTTTCATGTTCTTGAGTACATGGG 59.527 40.000 22.36 6.41 46.80 4.00
3530 6361 2.514803 ACCCTTCAAACCTGAATTCGG 58.485 47.619 7.35 7.35 40.78 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.227300 TGCCTTTTCTGGTGGACATATAGT 59.773 41.667 0.00 0.00 0.00 2.12
1 2 4.780815 TGCCTTTTCTGGTGGACATATAG 58.219 43.478 0.00 0.00 0.00 1.31
2 3 4.853468 TGCCTTTTCTGGTGGACATATA 57.147 40.909 0.00 0.00 0.00 0.86
3 4 3.737559 TGCCTTTTCTGGTGGACATAT 57.262 42.857 0.00 0.00 0.00 1.78
4 5 3.517296 TTGCCTTTTCTGGTGGACATA 57.483 42.857 0.00 0.00 0.00 2.29
5 6 2.380064 TTGCCTTTTCTGGTGGACAT 57.620 45.000 0.00 0.00 0.00 3.06
6 7 2.380064 ATTGCCTTTTCTGGTGGACA 57.620 45.000 0.00 0.00 0.00 4.02
7 8 3.069443 TCAAATTGCCTTTTCTGGTGGAC 59.931 43.478 0.00 0.00 0.00 4.02
8 9 3.303938 TCAAATTGCCTTTTCTGGTGGA 58.696 40.909 0.00 0.00 0.00 4.02
9 10 3.749665 TCAAATTGCCTTTTCTGGTGG 57.250 42.857 0.00 0.00 0.00 4.61
10 11 6.260493 TGAATTTCAAATTGCCTTTTCTGGTG 59.740 34.615 0.00 0.00 0.00 4.17
11 12 6.355747 TGAATTTCAAATTGCCTTTTCTGGT 58.644 32.000 0.00 0.00 0.00 4.00
12 13 6.864360 TGAATTTCAAATTGCCTTTTCTGG 57.136 33.333 0.00 0.00 0.00 3.86
25 26 8.381636 ATGGAACCCATGTATTTGAATTTCAAA 58.618 29.630 22.94 22.94 45.05 2.69
26 27 7.308450 TGGAACCCATGTATTTGAATTTCAA 57.692 32.000 7.74 7.74 34.03 2.69
27 28 6.924913 TGGAACCCATGTATTTGAATTTCA 57.075 33.333 0.00 0.00 0.00 2.69
28 29 7.653311 GCTATGGAACCCATGTATTTGAATTTC 59.347 37.037 8.64 0.00 44.84 2.17
29 30 7.500141 GCTATGGAACCCATGTATTTGAATTT 58.500 34.615 8.64 0.00 44.84 1.82
30 31 6.239008 CGCTATGGAACCCATGTATTTGAATT 60.239 38.462 8.64 0.00 44.84 2.17
31 32 5.241506 CGCTATGGAACCCATGTATTTGAAT 59.758 40.000 8.64 0.00 44.84 2.57
32 33 4.578516 CGCTATGGAACCCATGTATTTGAA 59.421 41.667 8.64 0.00 44.84 2.69
33 34 4.133820 CGCTATGGAACCCATGTATTTGA 58.866 43.478 8.64 0.00 44.84 2.69
34 35 3.304659 GCGCTATGGAACCCATGTATTTG 60.305 47.826 0.00 0.00 44.84 2.32
35 36 2.884639 GCGCTATGGAACCCATGTATTT 59.115 45.455 0.00 0.00 44.84 1.40
36 37 2.158682 TGCGCTATGGAACCCATGTATT 60.159 45.455 9.73 0.00 44.84 1.89
37 38 1.419762 TGCGCTATGGAACCCATGTAT 59.580 47.619 9.73 0.00 44.84 2.29
38 39 0.833949 TGCGCTATGGAACCCATGTA 59.166 50.000 9.73 0.00 44.84 2.29
39 40 0.748005 GTGCGCTATGGAACCCATGT 60.748 55.000 9.73 0.00 44.84 3.21
40 41 0.747644 TGTGCGCTATGGAACCCATG 60.748 55.000 9.73 0.00 44.84 3.66
41 42 0.748005 GTGTGCGCTATGGAACCCAT 60.748 55.000 9.73 3.77 46.99 4.00
42 43 1.376683 GTGTGCGCTATGGAACCCA 60.377 57.895 9.73 0.00 38.19 4.51
43 44 2.112815 GGTGTGCGCTATGGAACCC 61.113 63.158 9.73 0.00 0.00 4.11
44 45 2.461110 CGGTGTGCGCTATGGAACC 61.461 63.158 9.73 6.32 0.00 3.62
45 46 2.461110 CCGGTGTGCGCTATGGAAC 61.461 63.158 9.73 0.00 0.00 3.62
46 47 1.966901 ATCCGGTGTGCGCTATGGAA 61.967 55.000 9.73 0.00 0.00 3.53
47 48 2.363711 GATCCGGTGTGCGCTATGGA 62.364 60.000 9.73 9.41 0.00 3.41
48 49 1.956170 GATCCGGTGTGCGCTATGG 60.956 63.158 9.73 3.52 0.00 2.74
49 50 1.227234 TGATCCGGTGTGCGCTATG 60.227 57.895 9.73 0.00 0.00 2.23
50 51 1.227263 GTGATCCGGTGTGCGCTAT 60.227 57.895 9.73 0.00 0.00 2.97
51 52 1.955495 ATGTGATCCGGTGTGCGCTA 61.955 55.000 9.73 0.00 0.00 4.26
52 53 3.315142 ATGTGATCCGGTGTGCGCT 62.315 57.895 9.73 0.00 0.00 5.92
53 54 2.813179 GATGTGATCCGGTGTGCGC 61.813 63.158 0.00 0.00 0.00 6.09
54 55 2.173669 GGATGTGATCCGGTGTGCG 61.174 63.158 0.00 0.00 40.13 5.34
55 56 3.813596 GGATGTGATCCGGTGTGC 58.186 61.111 0.00 0.00 40.13 4.57
63 64 0.389166 GATCGGCCGAGGATGTGATC 60.389 60.000 33.87 19.17 0.00 2.92
64 65 1.668294 GATCGGCCGAGGATGTGAT 59.332 57.895 33.87 14.26 0.00 3.06
65 66 2.845550 CGATCGGCCGAGGATGTGA 61.846 63.158 33.87 7.83 0.00 3.58
66 67 2.355126 CGATCGGCCGAGGATGTG 60.355 66.667 33.87 14.58 0.00 3.21
67 68 4.286320 GCGATCGGCCGAGGATGT 62.286 66.667 33.87 16.84 34.80 3.06
68 69 3.790334 TTGCGATCGGCCGAGGATG 62.790 63.158 33.87 22.02 42.61 3.51
69 70 3.536917 TTGCGATCGGCCGAGGAT 61.537 61.111 33.87 17.71 42.61 3.24
70 71 4.508128 GTTGCGATCGGCCGAGGA 62.508 66.667 33.87 19.45 42.61 3.71
72 73 4.812476 TGGTTGCGATCGGCCGAG 62.812 66.667 33.87 21.73 42.61 4.63
73 74 4.380781 TTGGTTGCGATCGGCCGA 62.381 61.111 33.12 33.12 42.61 5.54
74 75 3.864686 CTTGGTTGCGATCGGCCG 61.865 66.667 22.12 22.12 42.61 6.13
75 76 1.982073 CTTCTTGGTTGCGATCGGCC 61.982 60.000 18.30 0.98 42.61 6.13
76 77 1.019278 TCTTCTTGGTTGCGATCGGC 61.019 55.000 18.30 9.85 43.96 5.54
77 78 1.002366 CTCTTCTTGGTTGCGATCGG 58.998 55.000 18.30 0.00 0.00 4.18
78 79 1.002366 CCTCTTCTTGGTTGCGATCG 58.998 55.000 11.69 11.69 0.00 3.69
79 80 0.729690 GCCTCTTCTTGGTTGCGATC 59.270 55.000 0.00 0.00 0.00 3.69
80 81 0.036732 TGCCTCTTCTTGGTTGCGAT 59.963 50.000 0.00 0.00 0.00 4.58
81 82 0.179032 TTGCCTCTTCTTGGTTGCGA 60.179 50.000 0.00 0.00 0.00 5.10
82 83 0.239347 CTTGCCTCTTCTTGGTTGCG 59.761 55.000 0.00 0.00 0.00 4.85
83 84 1.322442 ACTTGCCTCTTCTTGGTTGC 58.678 50.000 0.00 0.00 0.00 4.17
84 85 3.119708 GCATACTTGCCTCTTCTTGGTTG 60.120 47.826 0.00 0.00 43.38 3.77
85 86 3.084786 GCATACTTGCCTCTTCTTGGTT 58.915 45.455 0.00 0.00 43.38 3.67
86 87 2.716217 GCATACTTGCCTCTTCTTGGT 58.284 47.619 0.00 0.00 43.38 3.67
98 99 7.571244 CGGGCATGTAAATACTAAGCATACTTG 60.571 40.741 0.00 0.00 36.57 3.16
99 100 6.426937 CGGGCATGTAAATACTAAGCATACTT 59.573 38.462 0.00 0.00 40.07 2.24
100 101 5.932303 CGGGCATGTAAATACTAAGCATACT 59.068 40.000 0.00 0.00 0.00 2.12
101 102 5.929992 TCGGGCATGTAAATACTAAGCATAC 59.070 40.000 0.00 0.00 0.00 2.39
102 103 6.104146 TCGGGCATGTAAATACTAAGCATA 57.896 37.500 0.00 0.00 0.00 3.14
103 104 4.968259 TCGGGCATGTAAATACTAAGCAT 58.032 39.130 0.00 0.00 0.00 3.79
104 105 4.409718 TCGGGCATGTAAATACTAAGCA 57.590 40.909 0.00 0.00 0.00 3.91
105 106 4.994852 TGATCGGGCATGTAAATACTAAGC 59.005 41.667 0.00 0.00 0.00 3.09
106 107 5.989168 TGTGATCGGGCATGTAAATACTAAG 59.011 40.000 0.00 0.00 0.00 2.18
107 108 5.919755 TGTGATCGGGCATGTAAATACTAA 58.080 37.500 0.00 0.00 0.00 2.24
108 109 5.538849 TGTGATCGGGCATGTAAATACTA 57.461 39.130 0.00 0.00 0.00 1.82
109 110 4.415881 TGTGATCGGGCATGTAAATACT 57.584 40.909 0.00 0.00 0.00 2.12
110 111 5.493133 TTTGTGATCGGGCATGTAAATAC 57.507 39.130 0.00 0.00 0.00 1.89
111 112 5.883115 TCTTTTGTGATCGGGCATGTAAATA 59.117 36.000 0.00 0.00 0.00 1.40
112 113 4.704540 TCTTTTGTGATCGGGCATGTAAAT 59.295 37.500 0.00 0.00 0.00 1.40
113 114 4.075682 TCTTTTGTGATCGGGCATGTAAA 58.924 39.130 0.00 0.00 0.00 2.01
114 115 3.680490 TCTTTTGTGATCGGGCATGTAA 58.320 40.909 0.00 0.00 0.00 2.41
115 116 3.342377 TCTTTTGTGATCGGGCATGTA 57.658 42.857 0.00 0.00 0.00 2.29
116 117 2.198827 TCTTTTGTGATCGGGCATGT 57.801 45.000 0.00 0.00 0.00 3.21
117 118 3.788333 ATTCTTTTGTGATCGGGCATG 57.212 42.857 0.00 0.00 0.00 4.06
118 119 5.132502 TGATATTCTTTTGTGATCGGGCAT 58.867 37.500 0.00 0.00 0.00 4.40
119 120 4.522114 TGATATTCTTTTGTGATCGGGCA 58.478 39.130 0.00 0.00 0.00 5.36
120 121 5.273944 GTTGATATTCTTTTGTGATCGGGC 58.726 41.667 0.00 0.00 0.00 6.13
121 122 5.221048 GGGTTGATATTCTTTTGTGATCGGG 60.221 44.000 0.00 0.00 0.00 5.14
122 123 5.504010 CGGGTTGATATTCTTTTGTGATCGG 60.504 44.000 0.00 0.00 0.00 4.18
123 124 5.501715 CGGGTTGATATTCTTTTGTGATCG 58.498 41.667 0.00 0.00 0.00 3.69
124 125 5.733373 GCCGGGTTGATATTCTTTTGTGATC 60.733 44.000 2.18 0.00 0.00 2.92
125 126 4.097892 GCCGGGTTGATATTCTTTTGTGAT 59.902 41.667 2.18 0.00 0.00 3.06
126 127 3.442273 GCCGGGTTGATATTCTTTTGTGA 59.558 43.478 2.18 0.00 0.00 3.58
127 128 3.730662 CGCCGGGTTGATATTCTTTTGTG 60.731 47.826 2.18 0.00 0.00 3.33
128 129 2.422127 CGCCGGGTTGATATTCTTTTGT 59.578 45.455 2.18 0.00 0.00 2.83
129 130 2.422127 ACGCCGGGTTGATATTCTTTTG 59.578 45.455 2.18 0.00 0.00 2.44
130 131 2.718563 ACGCCGGGTTGATATTCTTTT 58.281 42.857 2.18 0.00 0.00 2.27
131 132 2.413310 ACGCCGGGTTGATATTCTTT 57.587 45.000 2.18 0.00 0.00 2.52
132 133 2.093128 AGAACGCCGGGTTGATATTCTT 60.093 45.455 12.31 0.00 39.50 2.52
133 134 1.485066 AGAACGCCGGGTTGATATTCT 59.515 47.619 12.31 1.02 39.50 2.40
134 135 1.949465 AGAACGCCGGGTTGATATTC 58.051 50.000 12.31 0.00 39.50 1.75
135 136 2.093128 AGAAGAACGCCGGGTTGATATT 60.093 45.455 12.31 3.45 39.50 1.28
136 137 1.485066 AGAAGAACGCCGGGTTGATAT 59.515 47.619 12.31 0.00 39.50 1.63
137 138 0.899720 AGAAGAACGCCGGGTTGATA 59.100 50.000 12.31 0.00 39.50 2.15
138 139 0.391263 GAGAAGAACGCCGGGTTGAT 60.391 55.000 12.31 2.25 39.50 2.57
139 140 1.005394 GAGAAGAACGCCGGGTTGA 60.005 57.895 12.31 0.00 39.50 3.18
140 141 0.602905 AAGAGAAGAACGCCGGGTTG 60.603 55.000 12.31 0.00 39.50 3.77
141 142 0.320508 GAAGAGAAGAACGCCGGGTT 60.321 55.000 2.18 5.70 42.96 4.11
142 143 1.292541 GAAGAGAAGAACGCCGGGT 59.707 57.895 2.18 0.00 0.00 5.28
143 144 1.805945 CGAAGAGAAGAACGCCGGG 60.806 63.158 2.18 0.00 0.00 5.73
144 145 0.179134 ATCGAAGAGAAGAACGCCGG 60.179 55.000 0.00 0.00 43.63 6.13
145 146 1.192793 GATCGAAGAGAAGAACGCCG 58.807 55.000 0.00 0.00 43.63 6.46
146 147 2.279582 TGATCGAAGAGAAGAACGCC 57.720 50.000 0.00 0.00 43.63 5.68
147 148 2.537625 CCATGATCGAAGAGAAGAACGC 59.462 50.000 0.00 0.00 43.63 4.84
148 149 2.537625 GCCATGATCGAAGAGAAGAACG 59.462 50.000 0.00 0.00 43.63 3.95
149 150 2.869192 GGCCATGATCGAAGAGAAGAAC 59.131 50.000 0.00 0.00 43.63 3.01
163 164 1.956869 TGAAGAGAAGAGGGCCATGA 58.043 50.000 6.18 0.00 0.00 3.07
165 166 1.064832 GCTTGAAGAGAAGAGGGCCAT 60.065 52.381 6.18 0.00 0.00 4.40
168 169 0.617935 AGGCTTGAAGAGAAGAGGGC 59.382 55.000 0.00 0.00 0.00 5.19
184 185 0.459411 GACCGAGAAGAAGCTCAGGC 60.459 60.000 0.00 0.00 34.28 4.85
206 207 4.310769 AGAGGTTTGACTTGTCGATGAAG 58.689 43.478 5.78 5.78 0.00 3.02
213 214 1.149148 GCGGAGAGGTTTGACTTGTC 58.851 55.000 0.00 0.00 0.00 3.18
252 253 1.621992 TGGTAGAGGATCCGAGCATC 58.378 55.000 5.98 0.00 33.66 3.91
254 255 1.145945 AGATGGTAGAGGATCCGAGCA 59.854 52.381 15.56 15.56 34.14 4.26
263 264 3.069443 GCTGGAGAAGAAGATGGTAGAGG 59.931 52.174 0.00 0.00 0.00 3.69
267 268 3.198635 CCTTGCTGGAGAAGAAGATGGTA 59.801 47.826 0.00 0.00 38.35 3.25
270 271 3.055240 AGACCTTGCTGGAGAAGAAGATG 60.055 47.826 3.40 0.00 39.71 2.90
272 273 2.564947 GAGACCTTGCTGGAGAAGAAGA 59.435 50.000 3.40 0.00 39.71 2.87
273 274 2.354604 GGAGACCTTGCTGGAGAAGAAG 60.355 54.545 3.40 0.00 39.71 2.85
275 276 1.203237 AGGAGACCTTGCTGGAGAAGA 60.203 52.381 3.40 0.00 39.71 2.87
277 278 1.270907 GAGGAGACCTTGCTGGAGAA 58.729 55.000 3.40 0.00 39.71 2.87
313 314 1.113517 TCTCTTATTCCCTCCCGCCG 61.114 60.000 0.00 0.00 0.00 6.46
314 315 0.682292 CTCTCTTATTCCCTCCCGCC 59.318 60.000 0.00 0.00 0.00 6.13
340 341 1.203125 TCCACCAAATTCCCACCCTTC 60.203 52.381 0.00 0.00 0.00 3.46
343 344 0.407918 TCTCCACCAAATTCCCACCC 59.592 55.000 0.00 0.00 0.00 4.61
346 347 0.322456 CGCTCTCCACCAAATTCCCA 60.322 55.000 0.00 0.00 0.00 4.37
347 348 1.032114 CCGCTCTCCACCAAATTCCC 61.032 60.000 0.00 0.00 0.00 3.97
357 358 3.531207 CCATCTCGCCGCTCTCCA 61.531 66.667 0.00 0.00 0.00 3.86
365 366 2.675348 CACTCTTTTCTTCCATCTCGCC 59.325 50.000 0.00 0.00 0.00 5.54
366 367 3.589988 TCACTCTTTTCTTCCATCTCGC 58.410 45.455 0.00 0.00 0.00 5.03
367 368 5.065704 TCTCACTCTTTTCTTCCATCTCG 57.934 43.478 0.00 0.00 0.00 4.04
369 370 6.872585 ATCTCTCACTCTTTTCTTCCATCT 57.127 37.500 0.00 0.00 0.00 2.90
382 385 3.190118 CCTTGTGGCAAAATCTCTCACTC 59.810 47.826 0.00 0.00 0.00 3.51
386 389 2.229784 CACCCTTGTGGCAAAATCTCTC 59.770 50.000 0.00 0.00 38.90 3.20
387 390 2.242043 CACCCTTGTGGCAAAATCTCT 58.758 47.619 0.00 0.00 38.90 3.10
398 401 5.990317 CGTAAGACTCCGACACCCTTGTG 62.990 56.522 0.00 0.00 44.94 3.33
399 402 1.617357 GTAAGACTCCGACACCCTTGT 59.383 52.381 0.00 0.00 39.32 3.16
400 403 1.402456 CGTAAGACTCCGACACCCTTG 60.402 57.143 0.00 0.00 43.02 3.61
416 474 0.604073 TCCGAACATGAGCCACGTAA 59.396 50.000 0.00 0.00 0.00 3.18
431 489 0.035439 GGGACTTTGCTGGAATCCGA 60.035 55.000 0.00 0.00 0.00 4.55
436 494 1.767692 GGAGGGGACTTTGCTGGAA 59.232 57.895 0.00 0.00 44.43 3.53
440 498 2.941583 GGGGGAGGGGACTTTGCT 60.942 66.667 0.00 0.00 44.43 3.91
457 515 0.605589 GTCGAACCAAACAGGGGAGG 60.606 60.000 0.00 0.00 43.89 4.30
458 518 0.396811 AGTCGAACCAAACAGGGGAG 59.603 55.000 0.00 0.00 43.89 4.30
464 524 0.378962 CCGCAAAGTCGAACCAAACA 59.621 50.000 0.00 0.00 0.00 2.83
470 530 2.699251 ATTTTCCCGCAAAGTCGAAC 57.301 45.000 0.00 0.00 0.00 3.95
473 533 3.434637 CCATAATTTTCCCGCAAAGTCG 58.565 45.455 0.00 0.00 0.00 4.18
495 555 1.382692 GGTCCTCGAAGTAGTCCGGG 61.383 65.000 0.00 0.00 0.00 5.73
515 575 0.923729 ATCCAACACCAGCCCCCATA 60.924 55.000 0.00 0.00 0.00 2.74
523 583 0.518636 CGCAAGTCATCCAACACCAG 59.481 55.000 0.00 0.00 0.00 4.00
555 615 3.542676 ATATCCGTCGGGGCGCAA 61.543 61.111 12.29 0.00 34.94 4.85
560 620 1.906990 ACTACTCATATCCGTCGGGG 58.093 55.000 12.29 0.00 37.02 5.73
563 623 4.537965 CCTCAAACTACTCATATCCGTCG 58.462 47.826 0.00 0.00 0.00 5.12
572 632 2.325484 TGCTGACCCTCAAACTACTCA 58.675 47.619 0.00 0.00 0.00 3.41
575 635 2.749621 CCAATGCTGACCCTCAAACTAC 59.250 50.000 0.00 0.00 0.00 2.73
577 637 1.425066 TCCAATGCTGACCCTCAAACT 59.575 47.619 0.00 0.00 0.00 2.66
589 650 1.221213 TTTAGGGCCCCTCCAATGCT 61.221 55.000 21.43 0.00 34.61 3.79
592 653 2.158310 GCTTATTTAGGGCCCCTCCAAT 60.158 50.000 21.43 14.00 34.61 3.16
599 660 3.130516 GTGAGTTTGCTTATTTAGGGCCC 59.869 47.826 16.46 16.46 0.00 5.80
606 667 8.682710 TGTTTGAGTTAGTGAGTTTGCTTATTT 58.317 29.630 0.00 0.00 0.00 1.40
607 668 8.220755 TGTTTGAGTTAGTGAGTTTGCTTATT 57.779 30.769 0.00 0.00 0.00 1.40
608 669 7.801716 TGTTTGAGTTAGTGAGTTTGCTTAT 57.198 32.000 0.00 0.00 0.00 1.73
609 670 7.041372 GGATGTTTGAGTTAGTGAGTTTGCTTA 60.041 37.037 0.00 0.00 0.00 3.09
610 671 6.238759 GGATGTTTGAGTTAGTGAGTTTGCTT 60.239 38.462 0.00 0.00 0.00 3.91
611 672 5.239525 GGATGTTTGAGTTAGTGAGTTTGCT 59.760 40.000 0.00 0.00 0.00 3.91
612 673 5.008613 TGGATGTTTGAGTTAGTGAGTTTGC 59.991 40.000 0.00 0.00 0.00 3.68
613 674 6.618287 TGGATGTTTGAGTTAGTGAGTTTG 57.382 37.500 0.00 0.00 0.00 2.93
614 675 8.950210 CATATGGATGTTTGAGTTAGTGAGTTT 58.050 33.333 0.00 0.00 0.00 2.66
615 676 7.554118 CCATATGGATGTTTGAGTTAGTGAGTT 59.446 37.037 17.49 0.00 37.39 3.01
616 677 7.050377 CCATATGGATGTTTGAGTTAGTGAGT 58.950 38.462 17.49 0.00 37.39 3.41
617 678 6.484643 CCCATATGGATGTTTGAGTTAGTGAG 59.515 42.308 24.00 0.00 37.39 3.51
618 679 6.356556 CCCATATGGATGTTTGAGTTAGTGA 58.643 40.000 24.00 0.00 37.39 3.41
619 680 5.532406 CCCCATATGGATGTTTGAGTTAGTG 59.468 44.000 24.00 0.01 37.39 2.74
620 681 5.694995 CCCCATATGGATGTTTGAGTTAGT 58.305 41.667 24.00 0.00 37.39 2.24
757 827 6.214399 AGTCTAAACCGTACTTCTGTTTCAG 58.786 40.000 0.00 0.00 35.64 3.02
767 838 4.924305 TGTCACAAGTCTAAACCGTACT 57.076 40.909 0.00 0.00 0.00 2.73
810 882 2.828877 TGTGTTTGACTAGTGAACGGG 58.171 47.619 0.00 0.00 0.00 5.28
947 1031 4.497291 TTTATAGGACGGCATTGGAAGT 57.503 40.909 0.00 0.00 0.00 3.01
948 1032 5.122396 GCTATTTATAGGACGGCATTGGAAG 59.878 44.000 0.00 0.00 0.00 3.46
956 1054 2.996621 CTGCTGCTATTTATAGGACGGC 59.003 50.000 0.00 0.00 0.00 5.68
1025 1147 2.708051 AGAGATCGAGGTTGTACGTGA 58.292 47.619 0.00 0.00 0.00 4.35
1130 1266 5.422214 AGCTATTACTAACTGGTTGCTGT 57.578 39.130 0.00 0.00 0.00 4.40
1131 1267 9.712305 AATATAGCTATTACTAACTGGTTGCTG 57.288 33.333 12.39 0.00 0.00 4.41
1132 1268 9.930693 GAATATAGCTATTACTAACTGGTTGCT 57.069 33.333 12.39 0.00 0.00 3.91
1133 1269 8.861101 CGAATATAGCTATTACTAACTGGTTGC 58.139 37.037 12.39 0.00 0.00 4.17
1134 1270 9.355215 CCGAATATAGCTATTACTAACTGGTTG 57.645 37.037 12.39 0.00 0.00 3.77
1135 1271 8.033626 GCCGAATATAGCTATTACTAACTGGTT 58.966 37.037 12.39 0.00 0.00 3.67
1138 1274 8.981724 TTGCCGAATATAGCTATTACTAACTG 57.018 34.615 12.39 0.00 0.00 3.16
1139 1275 9.587772 CATTGCCGAATATAGCTATTACTAACT 57.412 33.333 12.39 0.00 0.00 2.24
1140 1276 8.818057 CCATTGCCGAATATAGCTATTACTAAC 58.182 37.037 12.39 0.00 0.00 2.34
1141 1277 8.755028 TCCATTGCCGAATATAGCTATTACTAA 58.245 33.333 12.39 0.00 0.00 2.24
1142 1278 8.301252 TCCATTGCCGAATATAGCTATTACTA 57.699 34.615 12.39 0.00 0.00 1.82
1143 1279 7.182817 TCCATTGCCGAATATAGCTATTACT 57.817 36.000 12.39 0.00 0.00 2.24
1144 1280 6.480320 CCTCCATTGCCGAATATAGCTATTAC 59.520 42.308 12.39 3.28 0.00 1.89
1145 1281 6.156256 ACCTCCATTGCCGAATATAGCTATTA 59.844 38.462 12.39 0.00 0.00 0.98
1146 1282 5.045578 ACCTCCATTGCCGAATATAGCTATT 60.046 40.000 12.39 0.00 0.00 1.73
1147 1283 4.471386 ACCTCCATTGCCGAATATAGCTAT 59.529 41.667 11.77 11.77 0.00 2.97
1148 1284 3.838317 ACCTCCATTGCCGAATATAGCTA 59.162 43.478 0.00 0.00 0.00 3.32
1149 1285 2.639839 ACCTCCATTGCCGAATATAGCT 59.360 45.455 0.00 0.00 0.00 3.32
1150 1286 3.003480 GACCTCCATTGCCGAATATAGC 58.997 50.000 0.00 0.00 0.00 2.97
1151 1287 4.271696 TGACCTCCATTGCCGAATATAG 57.728 45.455 0.00 0.00 0.00 1.31
1152 1288 4.504864 CCTTGACCTCCATTGCCGAATATA 60.505 45.833 0.00 0.00 0.00 0.86
1153 1289 3.480470 CTTGACCTCCATTGCCGAATAT 58.520 45.455 0.00 0.00 0.00 1.28
1154 1290 2.421388 CCTTGACCTCCATTGCCGAATA 60.421 50.000 0.00 0.00 0.00 1.75
1155 1291 1.683011 CCTTGACCTCCATTGCCGAAT 60.683 52.381 0.00 0.00 0.00 3.34
1156 1292 0.322456 CCTTGACCTCCATTGCCGAA 60.322 55.000 0.00 0.00 0.00 4.30
1157 1293 1.299648 CCTTGACCTCCATTGCCGA 59.700 57.895 0.00 0.00 0.00 5.54
1158 1294 1.002134 ACCTTGACCTCCATTGCCG 60.002 57.895 0.00 0.00 0.00 5.69
1159 1295 0.329596 AGACCTTGACCTCCATTGCC 59.670 55.000 0.00 0.00 0.00 4.52
1766 1902 1.471684 CGACGGCATATAGTACTCCCC 59.528 57.143 0.00 0.00 0.00 4.81
2119 2255 1.005037 GTCGTGGATCACCTGTGCA 60.005 57.895 0.00 0.00 37.04 4.57
2323 2459 1.424638 AGTAGGCCGGCATGAAGTAT 58.575 50.000 30.85 5.35 0.00 2.12
2432 2568 6.729187 AGTAGCAACATTCTTTGAACACTTC 58.271 36.000 0.00 0.00 0.00 3.01
2436 2572 4.518970 GGGAGTAGCAACATTCTTTGAACA 59.481 41.667 0.00 0.00 0.00 3.18
2459 2595 1.482593 CAGTTAGGCCACCTACTCCAG 59.517 57.143 5.01 0.00 35.63 3.86
2578 2722 7.255569 TGTGTACATACTGTAGCACTACAATC 58.744 38.462 11.42 0.00 44.47 2.67
2670 2816 6.637658 GTCGGATCAAACAGTAGCTAAGATAC 59.362 42.308 0.00 0.00 0.00 2.24
2741 2887 4.643334 GCCCATCTTAAACCGTTTTAGGAT 59.357 41.667 4.54 4.54 42.05 3.24
2808 2956 4.481368 AAATATGTAACAGAGTCCCGCA 57.519 40.909 0.00 0.00 0.00 5.69
2941 3093 4.720273 GGGATGGAGGGACTAGTTTCTTAA 59.280 45.833 0.00 0.00 41.55 1.85
2942 3094 4.265124 TGGGATGGAGGGACTAGTTTCTTA 60.265 45.833 0.00 0.00 41.55 2.10
2943 3095 3.116174 GGGATGGAGGGACTAGTTTCTT 58.884 50.000 0.00 0.00 41.55 2.52
2944 3096 2.045885 TGGGATGGAGGGACTAGTTTCT 59.954 50.000 0.00 0.00 41.55 2.52
2952 3104 3.910627 ACACTATTATGGGATGGAGGGAC 59.089 47.826 0.00 0.00 0.00 4.46
2956 3108 5.551305 TGTGACACTATTATGGGATGGAG 57.449 43.478 7.20 0.00 0.00 3.86
2970 3122 3.530265 TGTAGGACGTTTTGTGACACT 57.470 42.857 7.20 0.00 0.00 3.55
2971 3123 4.806342 AATGTAGGACGTTTTGTGACAC 57.194 40.909 0.00 0.00 0.00 3.67
2972 3124 5.410132 CCATAATGTAGGACGTTTTGTGACA 59.590 40.000 0.00 0.00 28.31 3.58
2974 3126 4.938832 CCCATAATGTAGGACGTTTTGTGA 59.061 41.667 0.00 0.00 28.31 3.58
2975 3127 4.938832 TCCCATAATGTAGGACGTTTTGTG 59.061 41.667 0.00 0.00 28.31 3.33
2976 3128 5.168647 TCCCATAATGTAGGACGTTTTGT 57.831 39.130 0.00 0.00 28.31 2.83
2977 3129 5.820423 TCATCCCATAATGTAGGACGTTTTG 59.180 40.000 0.00 0.00 30.97 2.44
2990 3167 8.732854 TGTTAATTACTCCCTTCATCCCATAAT 58.267 33.333 0.00 0.00 0.00 1.28
3026 3203 4.792704 GCCATGGTGTTGTTCTTACTGTTG 60.793 45.833 14.67 0.00 0.00 3.33
3067 4191 1.002134 ATTGGGCTCAGTGGAACCG 60.002 57.895 0.00 0.00 37.80 4.44
3095 4219 7.394016 TGGAGCAACTCTTTCAGATAATTGTA 58.606 34.615 0.00 0.00 0.00 2.41
3116 4240 4.053295 CACAAAGTTTTTGAGGCATGGAG 58.947 43.478 8.41 0.00 0.00 3.86
3155 4280 4.024387 ACAAAATGTTTCACGCGTACATCT 60.024 37.500 22.45 9.71 31.63 2.90
3215 4632 7.237920 GCATATGCTCCTGGTTTTTAAAATG 57.762 36.000 20.64 0.00 38.21 2.32
3255 4820 1.076632 CTAGTGGACGAGAGGGGCT 60.077 63.158 0.00 0.00 0.00 5.19
3278 6105 6.240549 CCCTCGGGAGCAAATCTATATAAT 57.759 41.667 0.00 0.00 37.50 1.28
3442 6273 7.154656 GTGTTTGGAGAAAATAGGCTGAAATT 58.845 34.615 0.00 0.00 0.00 1.82
3481 6312 7.194112 TCATATTCCCATGTACTCAAGAACA 57.806 36.000 0.00 0.00 0.00 3.18
3498 6329 8.966868 TCAGGTTTGAAGGGTAATTTCATATTC 58.033 33.333 0.00 0.00 34.76 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.