Multiple sequence alignment - TraesCS5A01G337000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G337000 chr5A 100.000 2837 0 0 1 2837 545600250 545603086 0.000000e+00 5240.0
1 TraesCS5A01G337000 chr5A 89.167 120 11 2 2575 2693 370194810 370194928 6.330000e-32 148.0
2 TraesCS5A01G337000 chr5D 91.046 2122 89 42 489 2565 429742373 429744438 0.000000e+00 2772.0
3 TraesCS5A01G337000 chr5D 89.239 381 19 12 1 372 429739877 429740244 9.260000e-125 457.0
4 TraesCS5A01G337000 chr5B 90.985 1686 76 36 419 2069 519018052 519019696 0.000000e+00 2202.0
5 TraesCS5A01G337000 chr5B 85.271 387 22 16 1 372 519017574 519017940 1.610000e-97 366.0
6 TraesCS5A01G337000 chr5B 90.083 242 13 9 2114 2348 519019693 519019930 1.280000e-78 303.0
7 TraesCS5A01G337000 chr5B 91.720 157 9 4 2406 2561 519020233 519020386 6.160000e-52 215.0
8 TraesCS5A01G337000 chr5B 88.333 120 12 2 2575 2693 530948030 530948148 2.950000e-30 143.0
9 TraesCS5A01G337000 chr5B 100.000 36 0 0 2347 2382 519020199 519020234 1.820000e-07 67.6
10 TraesCS5A01G337000 chr2B 95.935 123 3 2 2575 2696 666402230 666402109 6.200000e-47 198.0
11 TraesCS5A01G337000 chr2B 95.935 123 3 2 2575 2696 666427450 666427329 6.200000e-47 198.0
12 TraesCS5A01G337000 chr2B 94.017 117 6 1 2575 2690 284066976 284066860 2.900000e-40 176.0
13 TraesCS5A01G337000 chr2D 92.683 123 8 1 2575 2696 557952323 557952201 2.900000e-40 176.0
14 TraesCS5A01G337000 chr6B 90.000 120 10 2 2575 2693 619037454 619037336 1.360000e-33 154.0
15 TraesCS5A01G337000 chr3D 87.500 120 10 2 2575 2689 606601094 606600975 1.770000e-27 134.0
16 TraesCS5A01G337000 chr2A 88.043 92 10 1 2604 2694 572050944 572051035 1.070000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G337000 chr5A 545600250 545603086 2836 False 5240.00 5240 100.0000 1 2837 1 chr5A.!!$F2 2836
1 TraesCS5A01G337000 chr5D 429739877 429744438 4561 False 1614.50 2772 90.1425 1 2565 2 chr5D.!!$F1 2564
2 TraesCS5A01G337000 chr5B 519017574 519020386 2812 False 630.72 2202 91.6118 1 2561 5 chr5B.!!$F2 2560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.030101 ACACGTTTTCATTGCCCACG 59.970 50.0 0.00 0.0 36.91 4.94 F
358 375 0.041090 ATTTGGCCTTACCCCCACAG 59.959 55.0 3.32 0.0 37.83 3.66 F
561 2594 0.248377 CGGGAAACGCTAGTACGGAG 60.248 60.0 0.00 0.0 37.37 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 3370 0.392193 ACTTGCTCCGCTTGATCTGG 60.392 55.000 0.00 0.0 0.0 3.86 R
1418 3489 1.073722 CTCTTTGGCCTGCTGTGGA 59.926 57.895 3.32 0.0 0.0 4.02 R
2490 4855 0.179234 TGAAAACACTCCACGCTCCA 59.821 50.000 0.00 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.304928 GCAGTGTAAACAGCAAGCTCAAT 60.305 43.478 0.00 0.00 0.00 2.57
36 37 4.794003 GCAGTGTAAACAGCAAGCTCAATT 60.794 41.667 0.00 0.00 0.00 2.32
37 38 4.913924 CAGTGTAAACAGCAAGCTCAATTC 59.086 41.667 0.00 0.00 0.00 2.17
38 39 4.823989 AGTGTAAACAGCAAGCTCAATTCT 59.176 37.500 0.00 0.00 0.00 2.40
42 43 3.911661 ACAGCAAGCTCAATTCTCAAC 57.088 42.857 0.00 0.00 0.00 3.18
49 50 2.225019 AGCTCAATTCTCAACAACAGCG 59.775 45.455 0.00 0.00 0.00 5.18
50 51 2.578495 CTCAATTCTCAACAACAGCGC 58.422 47.619 0.00 0.00 0.00 5.92
51 52 1.946081 TCAATTCTCAACAACAGCGCA 59.054 42.857 11.47 0.00 0.00 6.09
52 53 2.046313 CAATTCTCAACAACAGCGCAC 58.954 47.619 11.47 0.00 0.00 5.34
53 54 1.308047 ATTCTCAACAACAGCGCACA 58.692 45.000 11.47 0.00 0.00 4.57
54 55 0.657312 TTCTCAACAACAGCGCACAG 59.343 50.000 11.47 0.64 0.00 3.66
76 77 0.030101 ACACGTTTTCATTGCCCACG 59.970 50.000 0.00 0.00 36.91 4.94
101 102 9.170584 CGGTCTCAAGAAAGAAAATTAAAGAAC 57.829 33.333 0.00 0.00 0.00 3.01
130 131 1.273886 GGAAGACAAAGGACGAGAGCT 59.726 52.381 0.00 0.00 0.00 4.09
140 141 1.791103 GACGAGAGCTCTGATCCCCG 61.791 65.000 23.91 19.22 0.00 5.73
238 249 2.411535 CCTGATGGCGTACTACGGA 58.588 57.895 10.54 0.00 42.82 4.69
241 252 1.370172 GATGGCGTACTACGGAGCG 60.370 63.158 10.54 0.00 42.82 5.03
242 253 2.728427 GATGGCGTACTACGGAGCGG 62.728 65.000 10.54 0.00 42.82 5.52
243 254 4.919987 GGCGTACTACGGAGCGGC 62.920 72.222 10.54 5.52 42.82 6.53
244 255 3.885521 GCGTACTACGGAGCGGCT 61.886 66.667 0.00 0.00 42.82 5.52
245 256 2.537560 GCGTACTACGGAGCGGCTA 61.538 63.158 0.60 0.00 42.82 3.93
246 257 1.849976 GCGTACTACGGAGCGGCTAT 61.850 60.000 0.60 0.00 42.82 2.97
311 323 1.069636 GCCAGCGATCGAATTGATTCC 60.070 52.381 21.57 0.00 37.47 3.01
351 368 1.100510 GGACGGAATTTGGCCTTACC 58.899 55.000 3.32 0.00 39.84 2.85
355 372 0.041982 GGAATTTGGCCTTACCCCCA 59.958 55.000 3.32 0.00 37.83 4.96
356 373 1.191535 GAATTTGGCCTTACCCCCAC 58.808 55.000 3.32 0.00 37.83 4.61
357 374 0.489567 AATTTGGCCTTACCCCCACA 59.510 50.000 3.32 0.00 37.83 4.17
358 375 0.041090 ATTTGGCCTTACCCCCACAG 59.959 55.000 3.32 0.00 37.83 3.66
359 376 1.365105 TTTGGCCTTACCCCCACAGT 61.365 55.000 3.32 0.00 37.83 3.55
360 377 1.365105 TTGGCCTTACCCCCACAGTT 61.365 55.000 3.32 0.00 37.83 3.16
362 379 1.304134 GCCTTACCCCCACAGTTGG 60.304 63.158 0.00 0.00 43.50 3.77
363 380 1.304134 CCTTACCCCCACAGTTGGC 60.304 63.158 0.00 0.00 42.35 4.52
364 381 1.674322 CTTACCCCCACAGTTGGCG 60.674 63.158 0.00 0.00 42.35 5.69
365 382 2.406002 CTTACCCCCACAGTTGGCGT 62.406 60.000 0.00 0.00 42.35 5.68
366 383 1.126329 TTACCCCCACAGTTGGCGTA 61.126 55.000 0.00 0.00 42.35 4.42
367 384 1.829523 TACCCCCACAGTTGGCGTAC 61.830 60.000 0.00 0.00 42.35 3.67
368 385 2.428187 CCCCACAGTTGGCGTACA 59.572 61.111 0.00 0.00 42.35 2.90
369 386 1.964373 CCCCACAGTTGGCGTACAC 60.964 63.158 0.00 0.00 42.35 2.90
381 398 2.279650 GTACACACACACGGCCGT 60.280 61.111 28.70 28.70 0.00 5.68
390 407 4.988598 CACGGCCGTGCAGGTTCT 62.989 66.667 42.21 9.65 43.70 3.01
391 408 4.681978 ACGGCCGTGCAGGTTCTC 62.682 66.667 33.75 0.00 43.70 2.87
420 468 1.399440 CTACGGACGTAGCTTACAGCA 59.601 52.381 17.55 0.00 45.56 4.41
456 543 2.112297 GGGGTGACGAGGCAAACA 59.888 61.111 0.00 0.00 0.00 2.83
515 2548 3.683937 GGGAAACCGGGTCGTCGA 61.684 66.667 6.32 0.00 43.64 4.20
516 2549 2.431430 GGAAACCGGGTCGTCGAC 60.431 66.667 17.16 17.16 0.00 4.20
517 2550 2.336088 GAAACCGGGTCGTCGACA 59.664 61.111 25.64 0.00 33.68 4.35
518 2551 2.018324 GAAACCGGGTCGTCGACAC 61.018 63.158 25.64 21.99 33.68 3.67
519 2552 2.682256 GAAACCGGGTCGTCGACACA 62.682 60.000 26.18 0.00 35.39 3.72
559 2592 4.389772 CGGGAAACGCTAGTACGG 57.610 61.111 0.00 0.00 37.37 4.02
560 2593 1.802636 CGGGAAACGCTAGTACGGA 59.197 57.895 0.00 0.00 37.37 4.69
561 2594 0.248377 CGGGAAACGCTAGTACGGAG 60.248 60.000 0.00 0.00 37.37 4.63
647 2695 2.512515 GCTGGCTAGCTGGAACGG 60.513 66.667 15.78 3.44 46.57 4.44
677 2725 1.302511 CCGCGGGGATTAATGAGGG 60.303 63.158 20.10 0.00 34.06 4.30
695 2743 0.594110 GGGCACGAGTAGCTAGCTAG 59.406 60.000 24.78 16.84 0.00 3.42
840 2898 1.868469 TTTTACTCCGTCACCAACCG 58.132 50.000 0.00 0.00 0.00 4.44
845 2903 2.357034 CCGTCACCAACCGTCCTG 60.357 66.667 0.00 0.00 0.00 3.86
857 2915 3.151022 GTCCTGCCTCCTCCTCCG 61.151 72.222 0.00 0.00 0.00 4.63
901 2959 4.931661 ATATAACCAGGACCAGTACACG 57.068 45.455 0.00 0.00 0.00 4.49
908 2966 2.036217 CAGGACCAGTACACGGTACAAA 59.964 50.000 16.71 0.00 40.16 2.83
915 2973 4.121317 CAGTACACGGTACAAAGGACAAA 58.879 43.478 14.11 0.00 0.00 2.83
926 2984 3.126073 CAAAGGACAAAGGCTGAAAAGC 58.874 45.455 0.00 0.00 0.00 3.51
927 2985 2.071778 AGGACAAAGGCTGAAAAGCA 57.928 45.000 0.00 0.00 36.33 3.91
930 2988 2.866156 GGACAAAGGCTGAAAAGCAAAC 59.134 45.455 0.00 0.00 36.33 2.93
931 2989 2.535574 GACAAAGGCTGAAAAGCAAACG 59.464 45.455 0.00 0.00 36.33 3.60
1299 3370 2.742372 AAGGTGTCGTGCATCGGC 60.742 61.111 6.38 6.38 45.13 5.54
1494 3565 3.839432 CGGCCTTCGTCCTCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
1620 3691 1.648467 GGCAGATGAAGCGGTTCACC 61.648 60.000 30.41 22.72 45.58 4.02
1662 3733 3.068691 TTCGACTGGAGGGAGGCG 61.069 66.667 0.00 0.00 46.54 5.52
1821 3892 1.307343 CATGTCCCCTCCCACTCCT 60.307 63.158 0.00 0.00 0.00 3.69
1871 3942 1.692042 AGCTAGGACCTGCATGGCT 60.692 57.895 3.53 3.30 40.42 4.75
1889 3967 4.060038 GCCACACATGCAGGGCAC 62.060 66.667 15.05 0.00 45.70 5.01
1970 4055 7.265673 ACGTGATGCTCATAATACAAAGTAGT 58.734 34.615 0.00 0.00 0.00 2.73
1971 4056 8.410912 ACGTGATGCTCATAATACAAAGTAGTA 58.589 33.333 0.00 0.00 0.00 1.82
1972 4057 8.906693 CGTGATGCTCATAATACAAAGTAGTAG 58.093 37.037 0.00 0.00 0.00 2.57
2014 4099 2.967362 TGTGTGATGGTCGTGTATTCC 58.033 47.619 0.00 0.00 0.00 3.01
2015 4100 2.565391 TGTGTGATGGTCGTGTATTCCT 59.435 45.455 0.00 0.00 0.00 3.36
2055 4145 4.497473 TTTTTAAATCAGGCACGAGTGG 57.503 40.909 5.32 0.00 0.00 4.00
2063 4153 0.833287 AGGCACGAGTGGAAGCATAT 59.167 50.000 5.32 0.00 0.00 1.78
2069 4159 4.379394 GCACGAGTGGAAGCATATTTTTGA 60.379 41.667 5.32 0.00 0.00 2.69
2071 4161 6.324819 CACGAGTGGAAGCATATTTTTGAAT 58.675 36.000 0.00 0.00 0.00 2.57
2072 4162 6.252015 CACGAGTGGAAGCATATTTTTGAATG 59.748 38.462 0.00 0.00 0.00 2.67
2073 4163 6.150976 ACGAGTGGAAGCATATTTTTGAATGA 59.849 34.615 0.00 0.00 0.00 2.57
2095 4185 6.482835 TGAAAACATGTACAAAGACGAACAG 58.517 36.000 0.00 0.00 0.00 3.16
2099 4189 4.982916 ACATGTACAAAGACGAACAGAGAC 59.017 41.667 0.00 0.00 0.00 3.36
2105 4195 4.444720 ACAAAGACGAACAGAGACGATTTC 59.555 41.667 0.00 0.00 0.00 2.17
2109 4199 3.834610 ACGAACAGAGACGATTTCGAAT 58.165 40.909 7.01 0.00 42.72 3.34
2114 4204 6.020599 CGAACAGAGACGATTTCGAATACATT 60.021 38.462 7.01 0.00 42.72 2.71
2116 4206 6.993878 ACAGAGACGATTTCGAATACATTTG 58.006 36.000 7.01 0.00 43.02 2.32
2128 4218 3.740044 ATACATTTGCAAAGTCGACGG 57.260 42.857 18.19 5.23 0.00 4.79
2138 4228 4.831307 GTCGACGGACGCGAGCAT 62.831 66.667 15.93 0.00 42.26 3.79
2139 4229 3.197092 TCGACGGACGCGAGCATA 61.197 61.111 15.93 0.00 42.26 3.14
2140 4230 2.277692 CGACGGACGCGAGCATAA 60.278 61.111 15.93 0.00 34.51 1.90
2144 4234 1.326548 GACGGACGCGAGCATAATTTT 59.673 47.619 15.93 0.00 0.00 1.82
2170 4260 2.452767 GCATCCTTGCTTTGCTTGC 58.547 52.632 0.00 0.00 45.77 4.01
2178 4268 2.018324 GCTTTGCTTGCTTGGTCGC 61.018 57.895 0.00 0.00 0.00 5.19
2218 4312 3.338249 CGAGCAAATCCTCTCCAAAGAA 58.662 45.455 0.00 0.00 0.00 2.52
2230 4324 0.039165 CCAAAGAAAGGCTTGGTCGC 60.039 55.000 0.00 0.00 36.80 5.19
2278 4373 9.590451 AAAAATATTTGTACGCTAGCTACACTA 57.410 29.630 19.94 15.91 0.00 2.74
2290 4385 2.372504 AGCTACACTAGAGCCTCCGATA 59.627 50.000 0.00 0.00 41.06 2.92
2399 4764 0.390866 CCTAGCTATGGCATGCTCGG 60.391 60.000 21.90 20.80 40.35 4.63
2561 4926 1.204704 CTGTAGACTTGGATGTCGGCA 59.795 52.381 0.00 0.00 41.47 5.69
2565 4930 0.036388 GACTTGGATGTCGGCAGGAA 60.036 55.000 0.00 0.00 0.00 3.36
2566 4931 0.036010 ACTTGGATGTCGGCAGGAAG 60.036 55.000 0.00 0.00 0.00 3.46
2567 4932 0.745845 CTTGGATGTCGGCAGGAAGG 60.746 60.000 0.00 0.00 0.00 3.46
2568 4933 1.198094 TTGGATGTCGGCAGGAAGGA 61.198 55.000 0.00 0.00 0.00 3.36
2569 4934 1.198094 TGGATGTCGGCAGGAAGGAA 61.198 55.000 0.00 0.00 0.00 3.36
2570 4935 0.181350 GGATGTCGGCAGGAAGGAAT 59.819 55.000 0.00 0.00 0.00 3.01
2571 4936 1.408822 GGATGTCGGCAGGAAGGAATT 60.409 52.381 0.00 0.00 0.00 2.17
2572 4937 2.158813 GGATGTCGGCAGGAAGGAATTA 60.159 50.000 0.00 0.00 0.00 1.40
2573 4938 3.496870 GGATGTCGGCAGGAAGGAATTAT 60.497 47.826 0.00 0.00 0.00 1.28
2574 4939 4.262894 GGATGTCGGCAGGAAGGAATTATA 60.263 45.833 0.00 0.00 0.00 0.98
2575 4940 4.336889 TGTCGGCAGGAAGGAATTATAG 57.663 45.455 0.00 0.00 0.00 1.31
2576 4941 3.071023 TGTCGGCAGGAAGGAATTATAGG 59.929 47.826 0.00 0.00 0.00 2.57
2577 4942 3.071167 GTCGGCAGGAAGGAATTATAGGT 59.929 47.826 0.00 0.00 0.00 3.08
2578 4943 3.071023 TCGGCAGGAAGGAATTATAGGTG 59.929 47.826 0.00 0.00 0.00 4.00
2579 4944 3.181454 CGGCAGGAAGGAATTATAGGTGT 60.181 47.826 0.00 0.00 0.00 4.16
2580 4945 4.686122 CGGCAGGAAGGAATTATAGGTGTT 60.686 45.833 0.00 0.00 0.00 3.32
2581 4946 5.201243 GGCAGGAAGGAATTATAGGTGTTT 58.799 41.667 0.00 0.00 0.00 2.83
2582 4947 5.067805 GGCAGGAAGGAATTATAGGTGTTTG 59.932 44.000 0.00 0.00 0.00 2.93
2583 4948 5.067805 GCAGGAAGGAATTATAGGTGTTTGG 59.932 44.000 0.00 0.00 0.00 3.28
2584 4949 6.423182 CAGGAAGGAATTATAGGTGTTTGGA 58.577 40.000 0.00 0.00 0.00 3.53
2585 4950 7.062957 CAGGAAGGAATTATAGGTGTTTGGAT 58.937 38.462 0.00 0.00 0.00 3.41
2586 4951 7.561356 CAGGAAGGAATTATAGGTGTTTGGATT 59.439 37.037 0.00 0.00 0.00 3.01
2587 4952 8.787818 AGGAAGGAATTATAGGTGTTTGGATTA 58.212 33.333 0.00 0.00 0.00 1.75
2588 4953 9.067986 GGAAGGAATTATAGGTGTTTGGATTAG 57.932 37.037 0.00 0.00 0.00 1.73
2589 4954 9.847224 GAAGGAATTATAGGTGTTTGGATTAGA 57.153 33.333 0.00 0.00 0.00 2.10
2590 4955 9.853177 AAGGAATTATAGGTGTTTGGATTAGAG 57.147 33.333 0.00 0.00 0.00 2.43
2591 4956 9.225682 AGGAATTATAGGTGTTTGGATTAGAGA 57.774 33.333 0.00 0.00 0.00 3.10
2592 4957 9.495572 GGAATTATAGGTGTTTGGATTAGAGAG 57.504 37.037 0.00 0.00 0.00 3.20
2595 4960 6.739331 ATAGGTGTTTGGATTAGAGAGAGG 57.261 41.667 0.00 0.00 0.00 3.69
2596 4961 4.430441 AGGTGTTTGGATTAGAGAGAGGT 58.570 43.478 0.00 0.00 0.00 3.85
2597 4962 5.590818 AGGTGTTTGGATTAGAGAGAGGTA 58.409 41.667 0.00 0.00 0.00 3.08
2598 4963 6.023603 AGGTGTTTGGATTAGAGAGAGGTAA 58.976 40.000 0.00 0.00 0.00 2.85
2599 4964 6.070710 AGGTGTTTGGATTAGAGAGAGGTAAC 60.071 42.308 0.00 0.00 0.00 2.50
2600 4965 5.805994 GTGTTTGGATTAGAGAGAGGTAACG 59.194 44.000 0.00 0.00 46.39 3.18
2601 4966 5.479375 TGTTTGGATTAGAGAGAGGTAACGT 59.521 40.000 0.00 0.00 46.39 3.99
2602 4967 5.831702 TTGGATTAGAGAGAGGTAACGTC 57.168 43.478 0.00 0.00 46.39 4.34
2603 4968 4.851843 TGGATTAGAGAGAGGTAACGTCA 58.148 43.478 0.00 0.00 46.39 4.35
2604 4969 5.258841 TGGATTAGAGAGAGGTAACGTCAA 58.741 41.667 0.00 0.00 46.39 3.18
2605 4970 5.892119 TGGATTAGAGAGAGGTAACGTCAAT 59.108 40.000 0.00 0.00 46.39 2.57
2606 4971 6.183360 TGGATTAGAGAGAGGTAACGTCAATG 60.183 42.308 0.00 0.00 46.39 2.82
2607 4972 5.578005 TTAGAGAGAGGTAACGTCAATGG 57.422 43.478 0.00 0.00 46.39 3.16
2608 4973 3.432378 AGAGAGAGGTAACGTCAATGGT 58.568 45.455 0.00 0.00 46.39 3.55
2609 4974 4.597004 AGAGAGAGGTAACGTCAATGGTA 58.403 43.478 0.00 0.00 46.39 3.25
2610 4975 5.014858 AGAGAGAGGTAACGTCAATGGTAA 58.985 41.667 0.00 0.00 46.39 2.85
2611 4976 5.479375 AGAGAGAGGTAACGTCAATGGTAAA 59.521 40.000 0.00 0.00 46.39 2.01
2612 4977 5.721232 AGAGAGGTAACGTCAATGGTAAAG 58.279 41.667 0.00 0.00 46.39 1.85
2613 4978 4.828829 AGAGGTAACGTCAATGGTAAAGG 58.171 43.478 0.00 0.00 46.39 3.11
2614 4979 4.529377 AGAGGTAACGTCAATGGTAAAGGA 59.471 41.667 0.00 0.00 46.39 3.36
2615 4980 5.012354 AGAGGTAACGTCAATGGTAAAGGAA 59.988 40.000 0.00 0.00 46.39 3.36
2616 4981 5.812286 AGGTAACGTCAATGGTAAAGGAAT 58.188 37.500 0.00 0.00 46.39 3.01
2617 4982 6.243148 AGGTAACGTCAATGGTAAAGGAATT 58.757 36.000 0.00 0.00 46.39 2.17
2618 4983 7.396418 AGGTAACGTCAATGGTAAAGGAATTA 58.604 34.615 0.00 0.00 46.39 1.40
2619 4984 7.551617 AGGTAACGTCAATGGTAAAGGAATTAG 59.448 37.037 0.00 0.00 46.39 1.73
2620 4985 7.550196 GGTAACGTCAATGGTAAAGGAATTAGA 59.450 37.037 0.00 0.00 0.00 2.10
2621 4986 9.106070 GTAACGTCAATGGTAAAGGAATTAGAT 57.894 33.333 0.00 0.00 0.00 1.98
2622 4987 7.787725 ACGTCAATGGTAAAGGAATTAGATC 57.212 36.000 0.00 0.00 0.00 2.75
2623 4988 7.335627 ACGTCAATGGTAAAGGAATTAGATCA 58.664 34.615 0.00 0.00 0.00 2.92
2624 4989 7.280205 ACGTCAATGGTAAAGGAATTAGATCAC 59.720 37.037 0.00 0.00 0.00 3.06
2625 4990 7.516785 CGTCAATGGTAAAGGAATTAGATCACG 60.517 40.741 0.00 0.00 0.00 4.35
2626 4991 6.260050 TCAATGGTAAAGGAATTAGATCACGC 59.740 38.462 0.00 0.00 0.00 5.34
2627 4992 5.353394 TGGTAAAGGAATTAGATCACGCT 57.647 39.130 0.00 0.00 0.00 5.07
2628 4993 5.116180 TGGTAAAGGAATTAGATCACGCTG 58.884 41.667 0.00 0.00 0.00 5.18
2629 4994 5.116882 GGTAAAGGAATTAGATCACGCTGT 58.883 41.667 0.00 0.00 0.00 4.40
2630 4995 6.127281 TGGTAAAGGAATTAGATCACGCTGTA 60.127 38.462 0.00 0.00 0.00 2.74
2631 4996 6.759827 GGTAAAGGAATTAGATCACGCTGTAA 59.240 38.462 0.00 0.00 0.00 2.41
2632 4997 6.663944 AAAGGAATTAGATCACGCTGTAAC 57.336 37.500 0.00 0.00 0.00 2.50
2633 4998 5.339008 AGGAATTAGATCACGCTGTAACA 57.661 39.130 0.00 0.00 0.00 2.41
2634 4999 5.352284 AGGAATTAGATCACGCTGTAACAG 58.648 41.667 0.00 0.00 34.12 3.16
2635 5000 4.508124 GGAATTAGATCACGCTGTAACAGG 59.492 45.833 0.00 0.00 31.21 4.00
2637 5002 1.557099 AGATCACGCTGTAACAGGGA 58.443 50.000 0.00 0.00 45.41 4.20
2638 5003 1.204941 AGATCACGCTGTAACAGGGAC 59.795 52.381 0.00 0.00 45.41 4.46
2639 5004 0.108804 ATCACGCTGTAACAGGGACG 60.109 55.000 0.00 1.45 45.41 4.79
2640 5005 1.006571 CACGCTGTAACAGGGACGT 60.007 57.895 0.00 2.10 45.41 4.34
2641 5006 0.241749 CACGCTGTAACAGGGACGTA 59.758 55.000 0.00 0.00 45.41 3.57
2642 5007 0.961019 ACGCTGTAACAGGGACGTAA 59.039 50.000 0.00 0.00 45.41 3.18
2643 5008 1.547372 ACGCTGTAACAGGGACGTAAT 59.453 47.619 0.00 0.00 45.41 1.89
2644 5009 1.924524 CGCTGTAACAGGGACGTAATG 59.075 52.381 0.00 0.00 45.41 1.90
2645 5010 2.277084 GCTGTAACAGGGACGTAATGG 58.723 52.381 0.00 0.00 31.21 3.16
2646 5011 2.093869 GCTGTAACAGGGACGTAATGGA 60.094 50.000 0.00 0.00 31.21 3.41
2647 5012 3.431766 GCTGTAACAGGGACGTAATGGAT 60.432 47.826 0.00 0.00 31.21 3.41
2648 5013 4.202182 GCTGTAACAGGGACGTAATGGATA 60.202 45.833 0.00 0.00 31.21 2.59
2649 5014 5.682990 GCTGTAACAGGGACGTAATGGATAA 60.683 44.000 0.00 0.00 31.21 1.75
2650 5015 6.297080 TGTAACAGGGACGTAATGGATAAA 57.703 37.500 0.00 0.00 0.00 1.40
2651 5016 6.891388 TGTAACAGGGACGTAATGGATAAAT 58.109 36.000 0.00 0.00 0.00 1.40
2652 5017 6.987992 TGTAACAGGGACGTAATGGATAAATC 59.012 38.462 0.00 0.00 0.00 2.17
2669 5034 8.083462 GGATAAATCCTTGTTTTGTTTGGTTC 57.917 34.615 1.52 0.00 43.73 3.62
2670 5035 7.713073 GGATAAATCCTTGTTTTGTTTGGTTCA 59.287 33.333 1.52 0.00 43.73 3.18
2671 5036 9.271828 GATAAATCCTTGTTTTGTTTGGTTCAT 57.728 29.630 0.00 0.00 0.00 2.57
2672 5037 6.923928 AATCCTTGTTTTGTTTGGTTCATG 57.076 33.333 0.00 0.00 0.00 3.07
2673 5038 4.187694 TCCTTGTTTTGTTTGGTTCATGC 58.812 39.130 0.00 0.00 0.00 4.06
2674 5039 3.312146 CCTTGTTTTGTTTGGTTCATGCC 59.688 43.478 0.00 0.00 0.00 4.40
2675 5040 3.902881 TGTTTTGTTTGGTTCATGCCT 57.097 38.095 0.00 0.00 0.00 4.75
2676 5041 3.529533 TGTTTTGTTTGGTTCATGCCTG 58.470 40.909 0.00 0.00 0.00 4.85
2677 5042 3.055530 TGTTTTGTTTGGTTCATGCCTGT 60.056 39.130 0.00 0.00 0.00 4.00
2678 5043 4.160439 TGTTTTGTTTGGTTCATGCCTGTA 59.840 37.500 0.00 0.00 0.00 2.74
2679 5044 5.112686 GTTTTGTTTGGTTCATGCCTGTAA 58.887 37.500 0.00 0.00 0.00 2.41
2680 5045 5.344743 TTTGTTTGGTTCATGCCTGTAAA 57.655 34.783 0.00 0.00 0.00 2.01
2681 5046 4.582701 TGTTTGGTTCATGCCTGTAAAG 57.417 40.909 0.00 0.00 0.00 1.85
2682 5047 3.320541 TGTTTGGTTCATGCCTGTAAAGG 59.679 43.478 0.00 0.00 0.00 3.11
2683 5048 3.517296 TTGGTTCATGCCTGTAAAGGA 57.483 42.857 1.93 0.00 0.00 3.36
2684 5049 3.517296 TGGTTCATGCCTGTAAAGGAA 57.483 42.857 1.93 0.00 0.00 3.36
2685 5050 4.046286 TGGTTCATGCCTGTAAAGGAAT 57.954 40.909 1.93 0.00 0.00 3.01
2686 5051 4.016444 TGGTTCATGCCTGTAAAGGAATC 58.984 43.478 1.93 0.00 0.00 2.52
2687 5052 4.263905 TGGTTCATGCCTGTAAAGGAATCT 60.264 41.667 1.93 0.00 0.00 2.40
2688 5053 5.045213 TGGTTCATGCCTGTAAAGGAATCTA 60.045 40.000 1.93 0.00 0.00 1.98
2689 5054 5.529060 GGTTCATGCCTGTAAAGGAATCTAG 59.471 44.000 1.93 0.00 0.00 2.43
2690 5055 5.957771 TCATGCCTGTAAAGGAATCTAGT 57.042 39.130 1.93 0.00 0.00 2.57
2691 5056 6.313519 TCATGCCTGTAAAGGAATCTAGTT 57.686 37.500 1.93 0.00 0.00 2.24
2692 5057 7.432148 TCATGCCTGTAAAGGAATCTAGTTA 57.568 36.000 1.93 0.00 0.00 2.24
2693 5058 7.500992 TCATGCCTGTAAAGGAATCTAGTTAG 58.499 38.462 1.93 0.00 0.00 2.34
2694 5059 7.344612 TCATGCCTGTAAAGGAATCTAGTTAGA 59.655 37.037 1.93 0.00 36.65 2.10
2695 5060 6.875076 TGCCTGTAAAGGAATCTAGTTAGAC 58.125 40.000 1.93 0.00 34.72 2.59
2696 5061 6.439375 TGCCTGTAAAGGAATCTAGTTAGACA 59.561 38.462 1.93 0.00 34.72 3.41
2697 5062 7.038587 TGCCTGTAAAGGAATCTAGTTAGACAA 60.039 37.037 1.93 0.00 34.72 3.18
2698 5063 7.822822 GCCTGTAAAGGAATCTAGTTAGACAAA 59.177 37.037 1.93 0.00 34.72 2.83
2699 5064 9.720769 CCTGTAAAGGAATCTAGTTAGACAAAA 57.279 33.333 0.00 0.00 34.72 2.44
2725 5090 8.989653 AAAAAGAATCTAGTTAGACTTCGAGG 57.010 34.615 0.00 0.00 34.72 4.63
2726 5091 5.761165 AGAATCTAGTTAGACTTCGAGGC 57.239 43.478 0.00 0.00 34.72 4.70
2727 5092 5.442391 AGAATCTAGTTAGACTTCGAGGCT 58.558 41.667 0.00 0.00 37.37 4.58
2728 5093 5.298276 AGAATCTAGTTAGACTTCGAGGCTG 59.702 44.000 0.00 0.00 32.21 4.85
2729 5094 3.952931 TCTAGTTAGACTTCGAGGCTGT 58.047 45.455 0.00 0.00 32.21 4.40
2730 5095 4.333690 TCTAGTTAGACTTCGAGGCTGTT 58.666 43.478 0.00 0.00 32.21 3.16
2731 5096 3.305398 AGTTAGACTTCGAGGCTGTTG 57.695 47.619 0.00 0.00 32.21 3.33
2732 5097 1.727335 GTTAGACTTCGAGGCTGTTGC 59.273 52.381 0.00 0.00 32.21 4.17
2733 5098 0.109272 TAGACTTCGAGGCTGTTGCG 60.109 55.000 0.00 0.00 32.21 4.85
2734 5099 2.357517 ACTTCGAGGCTGTTGCGG 60.358 61.111 0.00 0.00 40.82 5.69
2735 5100 3.793144 CTTCGAGGCTGTTGCGGC 61.793 66.667 0.00 0.00 40.82 6.53
2743 5108 4.379243 CTGTTGCGGCCGGAGACT 62.379 66.667 29.38 0.00 0.00 3.24
2744 5109 4.680237 TGTTGCGGCCGGAGACTG 62.680 66.667 29.38 0.00 0.00 3.51
2745 5110 4.373116 GTTGCGGCCGGAGACTGA 62.373 66.667 29.38 5.35 0.00 3.41
2746 5111 3.621805 TTGCGGCCGGAGACTGAA 61.622 61.111 29.38 4.42 0.00 3.02
2747 5112 3.171828 TTGCGGCCGGAGACTGAAA 62.172 57.895 29.38 3.51 0.00 2.69
2748 5113 2.358247 GCGGCCGGAGACTGAAAA 60.358 61.111 29.38 0.00 0.00 2.29
2749 5114 1.964373 GCGGCCGGAGACTGAAAAA 60.964 57.895 29.38 0.00 0.00 1.94
2750 5115 1.912371 GCGGCCGGAGACTGAAAAAG 61.912 60.000 29.38 0.00 0.00 2.27
2751 5116 0.320421 CGGCCGGAGACTGAAAAAGA 60.320 55.000 20.10 0.00 0.00 2.52
2752 5117 1.876416 CGGCCGGAGACTGAAAAAGAA 60.876 52.381 20.10 0.00 0.00 2.52
2753 5118 1.807142 GGCCGGAGACTGAAAAAGAAG 59.193 52.381 5.05 0.00 0.00 2.85
2754 5119 1.807142 GCCGGAGACTGAAAAAGAAGG 59.193 52.381 5.05 0.00 0.00 3.46
2755 5120 2.550208 GCCGGAGACTGAAAAAGAAGGA 60.550 50.000 5.05 0.00 0.00 3.36
2756 5121 3.330267 CCGGAGACTGAAAAAGAAGGAG 58.670 50.000 0.00 0.00 0.00 3.69
2757 5122 3.006967 CCGGAGACTGAAAAAGAAGGAGA 59.993 47.826 0.00 0.00 0.00 3.71
2758 5123 4.241681 CGGAGACTGAAAAAGAAGGAGAG 58.758 47.826 0.00 0.00 0.00 3.20
2759 5124 4.000325 GGAGACTGAAAAAGAAGGAGAGC 59.000 47.826 0.00 0.00 0.00 4.09
2760 5125 4.503991 GGAGACTGAAAAAGAAGGAGAGCA 60.504 45.833 0.00 0.00 0.00 4.26
2761 5126 5.240013 AGACTGAAAAAGAAGGAGAGCAT 57.760 39.130 0.00 0.00 0.00 3.79
2762 5127 6.365970 AGACTGAAAAAGAAGGAGAGCATA 57.634 37.500 0.00 0.00 0.00 3.14
2763 5128 6.169800 AGACTGAAAAAGAAGGAGAGCATAC 58.830 40.000 0.00 0.00 0.00 2.39
2764 5129 5.869579 ACTGAAAAAGAAGGAGAGCATACA 58.130 37.500 0.00 0.00 0.00 2.29
2765 5130 6.299141 ACTGAAAAAGAAGGAGAGCATACAA 58.701 36.000 0.00 0.00 0.00 2.41
2766 5131 6.429385 ACTGAAAAAGAAGGAGAGCATACAAG 59.571 38.462 0.00 0.00 0.00 3.16
2767 5132 5.707298 TGAAAAAGAAGGAGAGCATACAAGG 59.293 40.000 0.00 0.00 0.00 3.61
2768 5133 3.922171 AAGAAGGAGAGCATACAAGGG 57.078 47.619 0.00 0.00 0.00 3.95
2769 5134 3.121929 AGAAGGAGAGCATACAAGGGA 57.878 47.619 0.00 0.00 0.00 4.20
2770 5135 3.037549 AGAAGGAGAGCATACAAGGGAG 58.962 50.000 0.00 0.00 0.00 4.30
2771 5136 2.856760 AGGAGAGCATACAAGGGAGA 57.143 50.000 0.00 0.00 0.00 3.71
2772 5137 2.676748 AGGAGAGCATACAAGGGAGAG 58.323 52.381 0.00 0.00 0.00 3.20
2773 5138 1.691434 GGAGAGCATACAAGGGAGAGG 59.309 57.143 0.00 0.00 0.00 3.69
2774 5139 2.672098 GAGAGCATACAAGGGAGAGGA 58.328 52.381 0.00 0.00 0.00 3.71
2775 5140 2.364002 GAGAGCATACAAGGGAGAGGAC 59.636 54.545 0.00 0.00 0.00 3.85
2776 5141 1.067821 GAGCATACAAGGGAGAGGACG 59.932 57.143 0.00 0.00 0.00 4.79
2777 5142 0.105039 GCATACAAGGGAGAGGACGG 59.895 60.000 0.00 0.00 0.00 4.79
2778 5143 1.776662 CATACAAGGGAGAGGACGGA 58.223 55.000 0.00 0.00 0.00 4.69
2779 5144 1.683917 CATACAAGGGAGAGGACGGAG 59.316 57.143 0.00 0.00 0.00 4.63
2780 5145 0.033405 TACAAGGGAGAGGACGGAGG 60.033 60.000 0.00 0.00 0.00 4.30
2781 5146 1.000486 CAAGGGAGAGGACGGAGGA 60.000 63.158 0.00 0.00 0.00 3.71
2782 5147 0.397816 CAAGGGAGAGGACGGAGGAT 60.398 60.000 0.00 0.00 0.00 3.24
2783 5148 0.105913 AAGGGAGAGGACGGAGGATC 60.106 60.000 0.00 0.00 0.00 3.36
2784 5149 1.899534 GGGAGAGGACGGAGGATCG 60.900 68.421 0.00 0.00 34.37 3.69
2785 5150 1.148723 GGAGAGGACGGAGGATCGA 59.851 63.158 0.00 0.00 34.37 3.59
2786 5151 0.887387 GGAGAGGACGGAGGATCGAG 60.887 65.000 0.00 0.00 34.37 4.04
2787 5152 0.887387 GAGAGGACGGAGGATCGAGG 60.887 65.000 0.00 0.00 34.37 4.63
2788 5153 1.148723 GAGGACGGAGGATCGAGGA 59.851 63.158 0.00 0.00 34.37 3.71
2789 5154 1.152922 AGGACGGAGGATCGAGGAC 60.153 63.158 0.00 0.00 34.37 3.85
2790 5155 2.544698 GGACGGAGGATCGAGGACG 61.545 68.421 0.00 0.00 41.26 4.79
2791 5156 2.516460 ACGGAGGATCGAGGACGG 60.516 66.667 0.00 0.00 40.21 4.79
2792 5157 2.203167 CGGAGGATCGAGGACGGA 60.203 66.667 0.00 0.00 40.21 4.69
2793 5158 1.822613 CGGAGGATCGAGGACGGAA 60.823 63.158 0.00 0.00 40.21 4.30
2794 5159 1.787057 CGGAGGATCGAGGACGGAAG 61.787 65.000 0.00 0.00 40.21 3.46
2795 5160 1.457009 GGAGGATCGAGGACGGAAGG 61.457 65.000 0.00 0.00 40.21 3.46
2796 5161 0.465824 GAGGATCGAGGACGGAAGGA 60.466 60.000 0.00 0.00 40.21 3.36
2797 5162 0.466555 AGGATCGAGGACGGAAGGAG 60.467 60.000 0.00 0.00 40.21 3.69
2798 5163 1.457009 GGATCGAGGACGGAAGGAGG 61.457 65.000 0.00 0.00 40.21 4.30
2799 5164 1.455959 ATCGAGGACGGAAGGAGGG 60.456 63.158 0.00 0.00 40.21 4.30
2800 5165 1.934459 ATCGAGGACGGAAGGAGGGA 61.934 60.000 0.00 0.00 40.21 4.20
2801 5166 2.122167 CGAGGACGGAAGGAGGGAG 61.122 68.421 0.00 0.00 35.72 4.30
2802 5167 1.758906 GAGGACGGAAGGAGGGAGG 60.759 68.421 0.00 0.00 0.00 4.30
2803 5168 2.226149 GAGGACGGAAGGAGGGAGGA 62.226 65.000 0.00 0.00 0.00 3.71
2804 5169 1.758906 GGACGGAAGGAGGGAGGAG 60.759 68.421 0.00 0.00 0.00 3.69
2805 5170 1.758906 GACGGAAGGAGGGAGGAGG 60.759 68.421 0.00 0.00 0.00 4.30
2806 5171 2.444895 CGGAAGGAGGGAGGAGGG 60.445 72.222 0.00 0.00 0.00 4.30
2807 5172 2.040359 GGAAGGAGGGAGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
2808 5173 2.040359 GAAGGAGGGAGGAGGGGG 60.040 72.222 0.00 0.00 0.00 5.40
2809 5174 2.543637 AAGGAGGGAGGAGGGGGA 60.544 66.667 0.00 0.00 0.00 4.81
2810 5175 1.954994 AAGGAGGGAGGAGGGGGAT 60.955 63.158 0.00 0.00 0.00 3.85
2811 5176 0.636932 AAGGAGGGAGGAGGGGGATA 60.637 60.000 0.00 0.00 0.00 2.59
2812 5177 0.408769 AGGAGGGAGGAGGGGGATAT 60.409 60.000 0.00 0.00 0.00 1.63
2813 5178 0.498685 GGAGGGAGGAGGGGGATATT 59.501 60.000 0.00 0.00 0.00 1.28
2814 5179 1.132036 GGAGGGAGGAGGGGGATATTT 60.132 57.143 0.00 0.00 0.00 1.40
2815 5180 1.988846 GAGGGAGGAGGGGGATATTTG 59.011 57.143 0.00 0.00 0.00 2.32
2816 5181 0.405973 GGGAGGAGGGGGATATTTGC 59.594 60.000 0.00 0.00 0.00 3.68
2817 5182 1.149101 GGAGGAGGGGGATATTTGCA 58.851 55.000 0.00 0.00 0.00 4.08
2818 5183 1.074566 GGAGGAGGGGGATATTTGCAG 59.925 57.143 0.00 0.00 0.00 4.41
2819 5184 0.480252 AGGAGGGGGATATTTGCAGC 59.520 55.000 0.00 0.00 0.00 5.25
2820 5185 0.890996 GGAGGGGGATATTTGCAGCG 60.891 60.000 0.00 0.00 0.00 5.18
2821 5186 0.108585 GAGGGGGATATTTGCAGCGA 59.891 55.000 0.00 0.00 0.00 4.93
2822 5187 0.550914 AGGGGGATATTTGCAGCGAA 59.449 50.000 0.00 0.00 0.00 4.70
2823 5188 1.145738 AGGGGGATATTTGCAGCGAAT 59.854 47.619 12.73 12.73 0.00 3.34
2824 5189 1.270550 GGGGGATATTTGCAGCGAATG 59.729 52.381 17.16 0.00 0.00 2.67
2825 5190 1.270550 GGGGATATTTGCAGCGAATGG 59.729 52.381 17.16 0.00 0.00 3.16
2826 5191 1.956477 GGGATATTTGCAGCGAATGGT 59.044 47.619 17.16 6.48 0.00 3.55
2827 5192 2.030805 GGGATATTTGCAGCGAATGGTC 60.031 50.000 17.16 13.90 0.00 4.02
2828 5193 2.030805 GGATATTTGCAGCGAATGGTCC 60.031 50.000 17.16 18.10 0.00 4.46
2829 5194 2.418368 TATTTGCAGCGAATGGTCCT 57.582 45.000 17.16 0.00 0.00 3.85
2830 5195 0.813184 ATTTGCAGCGAATGGTCCTG 59.187 50.000 7.11 0.00 0.00 3.86
2831 5196 1.865788 TTTGCAGCGAATGGTCCTGC 61.866 55.000 5.00 5.00 43.15 4.85
2832 5197 3.869272 GCAGCGAATGGTCCTGCG 61.869 66.667 0.00 0.00 37.90 5.18
2833 5198 2.125552 CAGCGAATGGTCCTGCGA 60.126 61.111 0.00 0.00 0.00 5.10
2834 5199 2.125512 AGCGAATGGTCCTGCGAC 60.126 61.111 0.00 0.00 38.38 5.19
2835 5200 3.554692 GCGAATGGTCCTGCGACG 61.555 66.667 0.00 0.00 40.17 5.12
2836 5201 2.180769 CGAATGGTCCTGCGACGA 59.819 61.111 0.00 0.00 40.17 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.657312 CTGTGCGCTGTTGTTGAGAA 59.343 50.000 9.73 0.00 0.00 2.87
36 37 1.775039 GCTGTGCGCTGTTGTTGAGA 61.775 55.000 9.73 0.00 35.14 3.27
37 38 1.369689 GCTGTGCGCTGTTGTTGAG 60.370 57.895 9.73 0.00 35.14 3.02
38 39 2.715005 GCTGTGCGCTGTTGTTGA 59.285 55.556 9.73 0.00 35.14 3.18
49 50 2.969443 ATGAAAACGTGTAGCTGTGC 57.031 45.000 0.00 0.00 0.00 4.57
50 51 2.973224 GCAATGAAAACGTGTAGCTGTG 59.027 45.455 0.00 0.00 0.00 3.66
51 52 2.031157 GGCAATGAAAACGTGTAGCTGT 60.031 45.455 0.00 0.00 0.00 4.40
52 53 2.584791 GGCAATGAAAACGTGTAGCTG 58.415 47.619 0.00 0.00 0.00 4.24
53 54 1.539827 GGGCAATGAAAACGTGTAGCT 59.460 47.619 0.00 0.00 0.00 3.32
54 55 1.268352 TGGGCAATGAAAACGTGTAGC 59.732 47.619 0.00 0.00 0.00 3.58
76 77 9.170584 CGTTCTTTAATTTTCTTTCTTGAGACC 57.829 33.333 0.00 0.00 0.00 3.85
101 102 4.318831 CGTCCTTTGTCTTCCTTTCTTTCG 60.319 45.833 0.00 0.00 0.00 3.46
186 187 3.894547 AAAGGCTGCACGTACCGGG 62.895 63.158 6.32 0.00 0.00 5.73
233 244 2.552802 GCTAGATAGCCGCTCCGTA 58.447 57.895 0.00 0.00 43.39 4.02
234 245 3.356837 GCTAGATAGCCGCTCCGT 58.643 61.111 0.00 0.00 43.39 4.69
242 253 5.497519 TGCGTTGTTGCTTAGCTAGATAGC 61.498 45.833 5.60 8.67 41.77 2.97
243 254 4.112634 TGCGTTGTTGCTTAGCTAGATAG 58.887 43.478 5.60 0.00 35.36 2.08
244 255 4.118093 TGCGTTGTTGCTTAGCTAGATA 57.882 40.909 5.60 0.00 35.36 1.98
245 256 2.972625 TGCGTTGTTGCTTAGCTAGAT 58.027 42.857 5.60 0.00 35.36 1.98
246 257 2.448926 TGCGTTGTTGCTTAGCTAGA 57.551 45.000 5.60 0.00 35.36 2.43
295 307 1.939934 TGTGGGAATCAATTCGATCGC 59.060 47.619 11.09 0.00 37.67 4.58
355 372 0.108089 TGTGTGTGTACGCCAACTGT 60.108 50.000 3.51 0.00 36.48 3.55
356 373 0.303493 GTGTGTGTGTACGCCAACTG 59.697 55.000 3.51 0.00 36.48 3.16
357 374 1.149361 CGTGTGTGTGTACGCCAACT 61.149 55.000 3.51 0.00 36.48 3.16
358 375 1.274476 CGTGTGTGTGTACGCCAAC 59.726 57.895 3.51 2.91 36.48 3.77
359 376 1.883544 CCGTGTGTGTGTACGCCAA 60.884 57.895 3.51 0.00 38.87 4.52
360 377 2.279584 CCGTGTGTGTGTACGCCA 60.280 61.111 3.51 0.00 38.87 5.69
362 379 3.708734 GGCCGTGTGTGTGTACGC 61.709 66.667 0.00 0.00 38.87 4.42
363 380 3.399770 CGGCCGTGTGTGTGTACG 61.400 66.667 19.50 0.00 39.83 3.67
364 381 2.279650 ACGGCCGTGTGTGTGTAC 60.280 61.111 33.75 0.00 0.00 2.90
365 382 2.279584 CACGGCCGTGTGTGTGTA 60.280 61.111 42.92 0.00 40.91 2.90
381 398 1.911357 AGTGATGGATGAGAACCTGCA 59.089 47.619 0.00 0.00 0.00 4.41
383 400 3.491619 CCGTAGTGATGGATGAGAACCTG 60.492 52.174 0.00 0.00 32.85 4.00
387 404 2.357952 CGTCCGTAGTGATGGATGAGAA 59.642 50.000 0.00 0.00 46.99 2.87
390 407 1.758936 ACGTCCGTAGTGATGGATGA 58.241 50.000 11.52 0.00 46.99 2.92
514 2547 1.344942 CGGCGCTCAGTACTTGTGTC 61.345 60.000 7.64 0.00 0.00 3.67
515 2548 1.372997 CGGCGCTCAGTACTTGTGT 60.373 57.895 7.64 0.00 0.00 3.72
516 2549 1.073216 CTCGGCGCTCAGTACTTGTG 61.073 60.000 7.64 0.00 0.00 3.33
517 2550 1.213013 CTCGGCGCTCAGTACTTGT 59.787 57.895 7.64 0.00 0.00 3.16
518 2551 1.517257 CCTCGGCGCTCAGTACTTG 60.517 63.158 7.64 0.00 0.00 3.16
519 2552 1.935327 GACCTCGGCGCTCAGTACTT 61.935 60.000 7.64 0.00 0.00 2.24
554 2587 2.233186 GCCCCAGGATTATACTCCGTAC 59.767 54.545 3.63 0.00 40.46 3.67
555 2588 2.532843 GCCCCAGGATTATACTCCGTA 58.467 52.381 3.63 0.00 40.46 4.02
556 2589 1.349067 GCCCCAGGATTATACTCCGT 58.651 55.000 3.63 0.00 40.46 4.69
557 2590 0.246635 CGCCCCAGGATTATACTCCG 59.753 60.000 3.63 0.00 40.46 4.63
558 2591 0.036294 GCGCCCCAGGATTATACTCC 60.036 60.000 0.00 0.79 35.37 3.85
559 2592 0.389948 CGCGCCCCAGGATTATACTC 60.390 60.000 0.00 0.00 0.00 2.59
560 2593 1.671742 CGCGCCCCAGGATTATACT 59.328 57.895 0.00 0.00 0.00 2.12
561 2594 2.033194 GCGCGCCCCAGGATTATAC 61.033 63.158 23.24 0.00 0.00 1.47
632 2670 4.096003 GCCCGTTCCAGCTAGCCA 62.096 66.667 12.13 0.00 0.00 4.75
677 2725 0.039888 GCTAGCTAGCTACTCGTGCC 60.040 60.000 33.71 5.30 45.62 5.01
840 2898 3.151022 CGGAGGAGGAGGCAGGAC 61.151 72.222 0.00 0.00 0.00 3.85
901 2959 2.858745 TCAGCCTTTGTCCTTTGTACC 58.141 47.619 0.00 0.00 0.00 3.34
908 2966 2.071778 TGCTTTTCAGCCTTTGTCCT 57.928 45.000 0.00 0.00 46.74 3.85
915 2973 1.541588 GGATCGTTTGCTTTTCAGCCT 59.458 47.619 0.00 0.00 46.74 4.58
944 3015 4.199432 AGCTATAGATTCTTGGCCGATG 57.801 45.455 3.21 0.00 0.00 3.84
948 3019 4.817318 AGCTAGCTATAGATTCTTGGCC 57.183 45.455 17.69 0.00 0.00 5.36
949 3020 5.348164 GCTAGCTAGCTATAGATTCTTGGC 58.652 45.833 33.71 15.67 45.62 4.52
1299 3370 0.392193 ACTTGCTCCGCTTGATCTGG 60.392 55.000 0.00 0.00 0.00 3.86
1418 3489 1.073722 CTCTTTGGCCTGCTGTGGA 59.926 57.895 3.32 0.00 0.00 4.02
1431 3502 1.587054 CCTGACGAGCGACCTCTTT 59.413 57.895 0.00 0.00 35.90 2.52
1494 3565 4.870305 CTCGACTTGTGGGACGAG 57.130 61.111 0.00 0.00 44.10 4.18
1632 3703 2.087009 GTCGAAGTCCTGGAACGCG 61.087 63.158 3.53 3.53 0.00 6.01
1821 3892 1.309347 CTCTCAGGGGAGCTCCAGA 59.691 63.158 33.29 24.46 41.13 3.86
1971 4056 8.967218 CACATTTACAAAATCAAAATCGACACT 58.033 29.630 0.00 0.00 0.00 3.55
1972 4057 8.751335 ACACATTTACAAAATCAAAATCGACAC 58.249 29.630 0.00 0.00 0.00 3.67
2049 4139 6.554419 TCATTCAAAAATATGCTTCCACTCG 58.446 36.000 0.00 0.00 0.00 4.18
2069 4159 7.476667 TGTTCGTCTTTGTACATGTTTTCATT 58.523 30.769 2.30 0.00 38.64 2.57
2071 4161 6.314152 TCTGTTCGTCTTTGTACATGTTTTCA 59.686 34.615 2.30 0.00 0.00 2.69
2072 4162 6.711579 TCTGTTCGTCTTTGTACATGTTTTC 58.288 36.000 2.30 0.00 0.00 2.29
2073 4163 6.537301 TCTCTGTTCGTCTTTGTACATGTTTT 59.463 34.615 2.30 0.00 0.00 2.43
2095 4185 5.795766 TGCAAATGTATTCGAAATCGTCTC 58.204 37.500 0.00 0.00 40.80 3.36
2099 4189 6.290026 CGACTTTGCAAATGTATTCGAAATCG 60.290 38.462 13.23 5.99 34.00 3.34
2105 4195 3.773549 CGTCGACTTTGCAAATGTATTCG 59.226 43.478 13.23 14.69 34.00 3.34
2109 4199 2.477375 GTCCGTCGACTTTGCAAATGTA 59.523 45.455 13.23 0.00 34.00 2.29
2114 4204 2.591311 GCGTCCGTCGACTTTGCAA 61.591 57.895 14.70 0.00 42.86 4.08
2116 4206 4.117372 CGCGTCCGTCGACTTTGC 62.117 66.667 14.70 10.96 42.86 3.68
2128 4218 3.091417 GTGTGAAAATTATGCTCGCGTC 58.909 45.455 5.77 0.00 0.00 5.19
2132 4222 2.840176 GCGTGTGTGAAAATTATGCTCG 59.160 45.455 0.00 0.00 0.00 5.03
2134 4224 3.913548 TGCGTGTGTGAAAATTATGCT 57.086 38.095 0.00 0.00 0.00 3.79
2135 4225 3.547468 GGATGCGTGTGTGAAAATTATGC 59.453 43.478 0.00 0.00 0.00 3.14
2136 4226 4.985413 AGGATGCGTGTGTGAAAATTATG 58.015 39.130 0.00 0.00 0.00 1.90
2138 4228 4.793071 CAAGGATGCGTGTGTGAAAATTA 58.207 39.130 0.00 0.00 0.00 1.40
2139 4229 3.641648 CAAGGATGCGTGTGTGAAAATT 58.358 40.909 0.00 0.00 0.00 1.82
2140 4230 2.607771 GCAAGGATGCGTGTGTGAAAAT 60.608 45.455 1.72 0.00 43.83 1.82
2144 4234 3.654201 GCAAGGATGCGTGTGTGA 58.346 55.556 1.72 0.00 43.83 3.58
2165 4255 4.030452 AAGCGCGACCAAGCAAGC 62.030 61.111 12.10 0.00 36.85 4.01
2166 4256 2.127118 CAAGCGCGACCAAGCAAG 60.127 61.111 12.10 0.00 36.85 4.01
2203 4297 4.394797 AAGCCTTTCTTTGGAGAGGATT 57.605 40.909 6.75 3.94 44.25 3.01
2230 4324 5.171339 TCTCATCTTGGAAAAGAGGAAGG 57.829 43.478 4.61 0.00 38.85 3.46
2232 4326 7.896383 TTTTTCTCATCTTGGAAAAGAGGAA 57.104 32.000 4.61 2.25 38.85 3.36
2262 4357 2.223845 GGCTCTAGTGTAGCTAGCGTAC 59.776 54.545 9.55 12.38 45.22 3.67
2278 4373 2.896685 CCTTCTCAATATCGGAGGCTCT 59.103 50.000 15.23 0.00 33.18 4.09
2279 4374 2.894126 TCCTTCTCAATATCGGAGGCTC 59.106 50.000 5.78 5.78 33.18 4.70
2382 4747 1.004560 GCCGAGCATGCCATAGCTA 60.005 57.895 15.66 0.00 42.04 3.32
2383 4748 2.281345 GCCGAGCATGCCATAGCT 60.281 61.111 15.66 0.00 45.25 3.32
2399 4764 2.232298 GATGATCGATCGGGAGGGGC 62.232 65.000 20.03 0.30 0.00 5.80
2419 4784 6.082338 CACAAAACTGCTCTGAATATGACAC 58.918 40.000 0.00 0.00 0.00 3.67
2426 4791 3.248602 GTCGACACAAAACTGCTCTGAAT 59.751 43.478 11.55 0.00 0.00 2.57
2485 4850 3.350219 AACACTCCACGCTCCATAATT 57.650 42.857 0.00 0.00 0.00 1.40
2487 4852 2.851263 AAACACTCCACGCTCCATAA 57.149 45.000 0.00 0.00 0.00 1.90
2489 4854 1.202758 TGAAAACACTCCACGCTCCAT 60.203 47.619 0.00 0.00 0.00 3.41
2490 4855 0.179234 TGAAAACACTCCACGCTCCA 59.821 50.000 0.00 0.00 0.00 3.86
2491 4856 0.868406 CTGAAAACACTCCACGCTCC 59.132 55.000 0.00 0.00 0.00 4.70
2561 4926 6.652205 TCCAAACACCTATAATTCCTTCCT 57.348 37.500 0.00 0.00 0.00 3.36
2565 4930 9.225682 TCTCTAATCCAAACACCTATAATTCCT 57.774 33.333 0.00 0.00 0.00 3.36
2566 4931 9.495572 CTCTCTAATCCAAACACCTATAATTCC 57.504 37.037 0.00 0.00 0.00 3.01
2569 4934 8.875168 CCTCTCTCTAATCCAAACACCTATAAT 58.125 37.037 0.00 0.00 0.00 1.28
2570 4935 7.844779 ACCTCTCTCTAATCCAAACACCTATAA 59.155 37.037 0.00 0.00 0.00 0.98
2571 4936 7.363031 ACCTCTCTCTAATCCAAACACCTATA 58.637 38.462 0.00 0.00 0.00 1.31
2572 4937 6.206042 ACCTCTCTCTAATCCAAACACCTAT 58.794 40.000 0.00 0.00 0.00 2.57
2573 4938 5.590818 ACCTCTCTCTAATCCAAACACCTA 58.409 41.667 0.00 0.00 0.00 3.08
2574 4939 4.430441 ACCTCTCTCTAATCCAAACACCT 58.570 43.478 0.00 0.00 0.00 4.00
2575 4940 4.828072 ACCTCTCTCTAATCCAAACACC 57.172 45.455 0.00 0.00 0.00 4.16
2576 4941 5.805994 CGTTACCTCTCTCTAATCCAAACAC 59.194 44.000 0.00 0.00 0.00 3.32
2577 4942 5.479375 ACGTTACCTCTCTCTAATCCAAACA 59.521 40.000 0.00 0.00 0.00 2.83
2578 4943 5.963594 ACGTTACCTCTCTCTAATCCAAAC 58.036 41.667 0.00 0.00 0.00 2.93
2579 4944 5.713389 TGACGTTACCTCTCTCTAATCCAAA 59.287 40.000 0.00 0.00 0.00 3.28
2580 4945 5.258841 TGACGTTACCTCTCTCTAATCCAA 58.741 41.667 0.00 0.00 0.00 3.53
2581 4946 4.851843 TGACGTTACCTCTCTCTAATCCA 58.148 43.478 0.00 0.00 0.00 3.41
2582 4947 5.831702 TTGACGTTACCTCTCTCTAATCC 57.168 43.478 0.00 0.00 0.00 3.01
2583 4948 6.183360 ACCATTGACGTTACCTCTCTCTAATC 60.183 42.308 0.00 0.00 0.00 1.75
2584 4949 5.657302 ACCATTGACGTTACCTCTCTCTAAT 59.343 40.000 0.00 0.00 0.00 1.73
2585 4950 5.014858 ACCATTGACGTTACCTCTCTCTAA 58.985 41.667 0.00 0.00 0.00 2.10
2586 4951 4.597004 ACCATTGACGTTACCTCTCTCTA 58.403 43.478 0.00 0.00 0.00 2.43
2587 4952 3.432378 ACCATTGACGTTACCTCTCTCT 58.568 45.455 0.00 0.00 0.00 3.10
2588 4953 3.870633 ACCATTGACGTTACCTCTCTC 57.129 47.619 0.00 0.00 0.00 3.20
2589 4954 5.337330 CCTTTACCATTGACGTTACCTCTCT 60.337 44.000 0.00 0.00 0.00 3.10
2590 4955 4.868734 CCTTTACCATTGACGTTACCTCTC 59.131 45.833 0.00 0.00 0.00 3.20
2591 4956 4.529377 TCCTTTACCATTGACGTTACCTCT 59.471 41.667 0.00 0.00 0.00 3.69
2592 4957 4.824289 TCCTTTACCATTGACGTTACCTC 58.176 43.478 0.00 0.00 0.00 3.85
2593 4958 4.895668 TCCTTTACCATTGACGTTACCT 57.104 40.909 0.00 0.00 0.00 3.08
2594 4959 6.505044 AATTCCTTTACCATTGACGTTACC 57.495 37.500 0.00 0.00 0.00 2.85
2595 4960 8.483307 TCTAATTCCTTTACCATTGACGTTAC 57.517 34.615 0.00 0.00 0.00 2.50
2596 4961 9.321562 GATCTAATTCCTTTACCATTGACGTTA 57.678 33.333 0.00 0.00 0.00 3.18
2597 4962 7.827236 TGATCTAATTCCTTTACCATTGACGTT 59.173 33.333 0.00 0.00 0.00 3.99
2598 4963 7.280205 GTGATCTAATTCCTTTACCATTGACGT 59.720 37.037 0.00 0.00 0.00 4.34
2599 4964 7.516785 CGTGATCTAATTCCTTTACCATTGACG 60.517 40.741 0.00 0.00 0.00 4.35
2600 4965 7.630924 CGTGATCTAATTCCTTTACCATTGAC 58.369 38.462 0.00 0.00 0.00 3.18
2601 4966 6.260050 GCGTGATCTAATTCCTTTACCATTGA 59.740 38.462 0.00 0.00 0.00 2.57
2602 4967 6.260936 AGCGTGATCTAATTCCTTTACCATTG 59.739 38.462 0.00 0.00 0.00 2.82
2603 4968 6.260936 CAGCGTGATCTAATTCCTTTACCATT 59.739 38.462 0.00 0.00 0.00 3.16
2604 4969 5.760253 CAGCGTGATCTAATTCCTTTACCAT 59.240 40.000 0.00 0.00 0.00 3.55
2605 4970 5.116180 CAGCGTGATCTAATTCCTTTACCA 58.884 41.667 0.00 0.00 0.00 3.25
2606 4971 5.116882 ACAGCGTGATCTAATTCCTTTACC 58.883 41.667 0.00 0.00 0.00 2.85
2607 4972 7.277098 TGTTACAGCGTGATCTAATTCCTTTAC 59.723 37.037 0.00 0.00 0.00 2.01
2608 4973 7.324935 TGTTACAGCGTGATCTAATTCCTTTA 58.675 34.615 0.00 0.00 0.00 1.85
2609 4974 6.170506 TGTTACAGCGTGATCTAATTCCTTT 58.829 36.000 0.00 0.00 0.00 3.11
2610 4975 5.730550 TGTTACAGCGTGATCTAATTCCTT 58.269 37.500 0.00 0.00 0.00 3.36
2611 4976 5.339008 TGTTACAGCGTGATCTAATTCCT 57.661 39.130 0.00 0.00 0.00 3.36
2612 4977 4.508124 CCTGTTACAGCGTGATCTAATTCC 59.492 45.833 6.88 0.00 0.00 3.01
2613 4978 4.508124 CCCTGTTACAGCGTGATCTAATTC 59.492 45.833 6.88 0.00 0.00 2.17
2614 4979 4.161565 TCCCTGTTACAGCGTGATCTAATT 59.838 41.667 6.88 0.00 0.00 1.40
2615 4980 3.704566 TCCCTGTTACAGCGTGATCTAAT 59.295 43.478 6.88 0.00 0.00 1.73
2616 4981 3.093814 TCCCTGTTACAGCGTGATCTAA 58.906 45.455 6.88 0.00 0.00 2.10
2617 4982 2.426024 GTCCCTGTTACAGCGTGATCTA 59.574 50.000 6.88 0.00 0.00 1.98
2618 4983 1.204941 GTCCCTGTTACAGCGTGATCT 59.795 52.381 6.88 0.00 0.00 2.75
2619 4984 1.641577 GTCCCTGTTACAGCGTGATC 58.358 55.000 6.88 0.00 0.00 2.92
2620 4985 0.108804 CGTCCCTGTTACAGCGTGAT 60.109 55.000 6.88 0.00 0.00 3.06
2621 4986 1.287815 CGTCCCTGTTACAGCGTGA 59.712 57.895 6.88 0.30 0.00 4.35
2622 4987 0.241749 TACGTCCCTGTTACAGCGTG 59.758 55.000 20.68 8.10 32.20 5.34
2623 4988 0.961019 TTACGTCCCTGTTACAGCGT 59.039 50.000 17.40 17.40 33.76 5.07
2624 4989 1.924524 CATTACGTCCCTGTTACAGCG 59.075 52.381 6.88 8.00 0.00 5.18
2625 4990 2.093869 TCCATTACGTCCCTGTTACAGC 60.094 50.000 6.88 0.00 0.00 4.40
2626 4991 3.880047 TCCATTACGTCCCTGTTACAG 57.120 47.619 5.22 5.22 0.00 2.74
2627 4992 5.936187 TTATCCATTACGTCCCTGTTACA 57.064 39.130 0.00 0.00 0.00 2.41
2628 4993 6.426025 GGATTTATCCATTACGTCCCTGTTAC 59.574 42.308 3.87 0.00 46.38 2.50
2629 4994 6.527423 GGATTTATCCATTACGTCCCTGTTA 58.473 40.000 3.87 0.00 46.38 2.41
2630 4995 5.374071 GGATTTATCCATTACGTCCCTGTT 58.626 41.667 3.87 0.00 46.38 3.16
2631 4996 4.969484 GGATTTATCCATTACGTCCCTGT 58.031 43.478 3.87 0.00 46.38 4.00
2645 5010 8.655651 TGAACCAAACAAAACAAGGATTTATC 57.344 30.769 0.00 0.00 0.00 1.75
2646 5011 9.054922 CATGAACCAAACAAAACAAGGATTTAT 57.945 29.630 0.00 0.00 0.00 1.40
2647 5012 7.011857 GCATGAACCAAACAAAACAAGGATTTA 59.988 33.333 0.00 0.00 0.00 1.40
2648 5013 6.183360 GCATGAACCAAACAAAACAAGGATTT 60.183 34.615 0.00 0.00 0.00 2.17
2649 5014 5.296531 GCATGAACCAAACAAAACAAGGATT 59.703 36.000 0.00 0.00 0.00 3.01
2650 5015 4.815846 GCATGAACCAAACAAAACAAGGAT 59.184 37.500 0.00 0.00 0.00 3.24
2651 5016 4.187694 GCATGAACCAAACAAAACAAGGA 58.812 39.130 0.00 0.00 0.00 3.36
2652 5017 3.312146 GGCATGAACCAAACAAAACAAGG 59.688 43.478 0.00 0.00 0.00 3.61
2653 5018 4.034279 CAGGCATGAACCAAACAAAACAAG 59.966 41.667 0.00 0.00 0.00 3.16
2654 5019 3.937706 CAGGCATGAACCAAACAAAACAA 59.062 39.130 0.00 0.00 0.00 2.83
2655 5020 3.055530 ACAGGCATGAACCAAACAAAACA 60.056 39.130 4.84 0.00 0.00 2.83
2656 5021 3.530535 ACAGGCATGAACCAAACAAAAC 58.469 40.909 4.84 0.00 0.00 2.43
2657 5022 3.902881 ACAGGCATGAACCAAACAAAA 57.097 38.095 4.84 0.00 0.00 2.44
2658 5023 5.344743 TTTACAGGCATGAACCAAACAAA 57.655 34.783 4.84 0.00 0.00 2.83
2659 5024 4.202202 CCTTTACAGGCATGAACCAAACAA 60.202 41.667 4.84 0.00 31.53 2.83
2660 5025 3.320541 CCTTTACAGGCATGAACCAAACA 59.679 43.478 4.84 0.00 31.53 2.83
2661 5026 3.572255 TCCTTTACAGGCATGAACCAAAC 59.428 43.478 4.84 0.00 40.58 2.93
2662 5027 3.838565 TCCTTTACAGGCATGAACCAAA 58.161 40.909 4.84 0.00 40.58 3.28
2663 5028 3.517296 TCCTTTACAGGCATGAACCAA 57.483 42.857 4.84 0.00 40.58 3.67
2664 5029 3.517296 TTCCTTTACAGGCATGAACCA 57.483 42.857 4.84 0.00 40.58 3.67
2665 5030 4.273318 AGATTCCTTTACAGGCATGAACC 58.727 43.478 4.84 0.00 40.58 3.62
2666 5031 6.116126 ACTAGATTCCTTTACAGGCATGAAC 58.884 40.000 4.84 0.00 40.58 3.18
2667 5032 6.313519 ACTAGATTCCTTTACAGGCATGAA 57.686 37.500 4.84 0.00 40.58 2.57
2668 5033 5.957771 ACTAGATTCCTTTACAGGCATGA 57.042 39.130 4.84 0.00 40.58 3.07
2669 5034 7.439655 GTCTAACTAGATTCCTTTACAGGCATG 59.560 40.741 0.00 0.00 35.93 4.06
2670 5035 7.125811 TGTCTAACTAGATTCCTTTACAGGCAT 59.874 37.037 0.00 0.00 35.93 4.40
2671 5036 6.439375 TGTCTAACTAGATTCCTTTACAGGCA 59.561 38.462 0.00 0.00 35.93 4.75
2672 5037 6.875076 TGTCTAACTAGATTCCTTTACAGGC 58.125 40.000 0.00 0.00 35.93 4.85
2673 5038 9.720769 TTTTGTCTAACTAGATTCCTTTACAGG 57.279 33.333 0.00 0.00 36.72 4.00
2700 5065 7.546316 GCCTCGAAGTCTAACTAGATTCTTTTT 59.454 37.037 0.00 0.00 34.39 1.94
2701 5066 7.036829 GCCTCGAAGTCTAACTAGATTCTTTT 58.963 38.462 0.00 0.00 34.39 2.27
2702 5067 6.378848 AGCCTCGAAGTCTAACTAGATTCTTT 59.621 38.462 0.00 0.00 34.39 2.52
2703 5068 5.889289 AGCCTCGAAGTCTAACTAGATTCTT 59.111 40.000 0.00 0.00 34.39 2.52
2704 5069 5.298276 CAGCCTCGAAGTCTAACTAGATTCT 59.702 44.000 0.00 0.00 34.39 2.40
2705 5070 5.066764 ACAGCCTCGAAGTCTAACTAGATTC 59.933 44.000 0.00 0.00 34.39 2.52
2706 5071 4.951094 ACAGCCTCGAAGTCTAACTAGATT 59.049 41.667 0.00 0.00 34.39 2.40
2707 5072 4.528920 ACAGCCTCGAAGTCTAACTAGAT 58.471 43.478 0.00 0.00 34.39 1.98
2708 5073 3.952931 ACAGCCTCGAAGTCTAACTAGA 58.047 45.455 0.00 0.00 0.00 2.43
2709 5074 4.416620 CAACAGCCTCGAAGTCTAACTAG 58.583 47.826 0.00 0.00 0.00 2.57
2710 5075 3.367087 GCAACAGCCTCGAAGTCTAACTA 60.367 47.826 0.00 0.00 0.00 2.24
2711 5076 2.610727 GCAACAGCCTCGAAGTCTAACT 60.611 50.000 0.00 0.00 0.00 2.24
2712 5077 1.727335 GCAACAGCCTCGAAGTCTAAC 59.273 52.381 0.00 0.00 0.00 2.34
2713 5078 1.668919 CGCAACAGCCTCGAAGTCTAA 60.669 52.381 0.00 0.00 0.00 2.10
2714 5079 0.109272 CGCAACAGCCTCGAAGTCTA 60.109 55.000 0.00 0.00 0.00 2.59
2715 5080 1.373497 CGCAACAGCCTCGAAGTCT 60.373 57.895 0.00 0.00 0.00 3.24
2716 5081 2.383527 CCGCAACAGCCTCGAAGTC 61.384 63.158 0.00 0.00 0.00 3.01
2717 5082 2.357517 CCGCAACAGCCTCGAAGT 60.358 61.111 0.00 0.00 0.00 3.01
2718 5083 3.793144 GCCGCAACAGCCTCGAAG 61.793 66.667 0.00 0.00 0.00 3.79
2726 5091 4.379243 AGTCTCCGGCCGCAACAG 62.379 66.667 22.85 12.43 0.00 3.16
2727 5092 4.680237 CAGTCTCCGGCCGCAACA 62.680 66.667 22.85 1.33 0.00 3.33
2728 5093 3.876589 TTCAGTCTCCGGCCGCAAC 62.877 63.158 22.85 16.90 0.00 4.17
2729 5094 2.668185 TTTTCAGTCTCCGGCCGCAA 62.668 55.000 22.85 9.22 0.00 4.85
2730 5095 2.668185 TTTTTCAGTCTCCGGCCGCA 62.668 55.000 22.85 2.88 0.00 5.69
2731 5096 1.912371 CTTTTTCAGTCTCCGGCCGC 61.912 60.000 22.85 5.89 0.00 6.53
2732 5097 0.320421 TCTTTTTCAGTCTCCGGCCG 60.320 55.000 21.04 21.04 0.00 6.13
2733 5098 1.807142 CTTCTTTTTCAGTCTCCGGCC 59.193 52.381 0.00 0.00 0.00 6.13
2734 5099 1.807142 CCTTCTTTTTCAGTCTCCGGC 59.193 52.381 0.00 0.00 0.00 6.13
2735 5100 3.006967 TCTCCTTCTTTTTCAGTCTCCGG 59.993 47.826 0.00 0.00 0.00 5.14
2736 5101 4.241681 CTCTCCTTCTTTTTCAGTCTCCG 58.758 47.826 0.00 0.00 0.00 4.63
2737 5102 4.000325 GCTCTCCTTCTTTTTCAGTCTCC 59.000 47.826 0.00 0.00 0.00 3.71
2738 5103 4.636249 TGCTCTCCTTCTTTTTCAGTCTC 58.364 43.478 0.00 0.00 0.00 3.36
2739 5104 4.696479 TGCTCTCCTTCTTTTTCAGTCT 57.304 40.909 0.00 0.00 0.00 3.24
2740 5105 5.934625 TGTATGCTCTCCTTCTTTTTCAGTC 59.065 40.000 0.00 0.00 0.00 3.51
2741 5106 5.869579 TGTATGCTCTCCTTCTTTTTCAGT 58.130 37.500 0.00 0.00 0.00 3.41
2742 5107 6.128063 CCTTGTATGCTCTCCTTCTTTTTCAG 60.128 42.308 0.00 0.00 0.00 3.02
2743 5108 5.707298 CCTTGTATGCTCTCCTTCTTTTTCA 59.293 40.000 0.00 0.00 0.00 2.69
2744 5109 5.124617 CCCTTGTATGCTCTCCTTCTTTTTC 59.875 44.000 0.00 0.00 0.00 2.29
2745 5110 5.012893 CCCTTGTATGCTCTCCTTCTTTTT 58.987 41.667 0.00 0.00 0.00 1.94
2746 5111 4.289672 TCCCTTGTATGCTCTCCTTCTTTT 59.710 41.667 0.00 0.00 0.00 2.27
2747 5112 3.846588 TCCCTTGTATGCTCTCCTTCTTT 59.153 43.478 0.00 0.00 0.00 2.52
2748 5113 3.454082 CTCCCTTGTATGCTCTCCTTCTT 59.546 47.826 0.00 0.00 0.00 2.52
2749 5114 3.037549 CTCCCTTGTATGCTCTCCTTCT 58.962 50.000 0.00 0.00 0.00 2.85
2750 5115 3.034635 TCTCCCTTGTATGCTCTCCTTC 58.965 50.000 0.00 0.00 0.00 3.46
2751 5116 3.037549 CTCTCCCTTGTATGCTCTCCTT 58.962 50.000 0.00 0.00 0.00 3.36
2752 5117 2.676748 CTCTCCCTTGTATGCTCTCCT 58.323 52.381 0.00 0.00 0.00 3.69
2753 5118 1.691434 CCTCTCCCTTGTATGCTCTCC 59.309 57.143 0.00 0.00 0.00 3.71
2754 5119 2.364002 GTCCTCTCCCTTGTATGCTCTC 59.636 54.545 0.00 0.00 0.00 3.20
2755 5120 2.393646 GTCCTCTCCCTTGTATGCTCT 58.606 52.381 0.00 0.00 0.00 4.09
2756 5121 1.067821 CGTCCTCTCCCTTGTATGCTC 59.932 57.143 0.00 0.00 0.00 4.26
2757 5122 1.115467 CGTCCTCTCCCTTGTATGCT 58.885 55.000 0.00 0.00 0.00 3.79
2758 5123 0.105039 CCGTCCTCTCCCTTGTATGC 59.895 60.000 0.00 0.00 0.00 3.14
2759 5124 1.683917 CTCCGTCCTCTCCCTTGTATG 59.316 57.143 0.00 0.00 0.00 2.39
2760 5125 1.411787 CCTCCGTCCTCTCCCTTGTAT 60.412 57.143 0.00 0.00 0.00 2.29
2761 5126 0.033405 CCTCCGTCCTCTCCCTTGTA 60.033 60.000 0.00 0.00 0.00 2.41
2762 5127 1.305381 CCTCCGTCCTCTCCCTTGT 60.305 63.158 0.00 0.00 0.00 3.16
2763 5128 0.397816 ATCCTCCGTCCTCTCCCTTG 60.398 60.000 0.00 0.00 0.00 3.61
2764 5129 0.105913 GATCCTCCGTCCTCTCCCTT 60.106 60.000 0.00 0.00 0.00 3.95
2765 5130 1.539665 GATCCTCCGTCCTCTCCCT 59.460 63.158 0.00 0.00 0.00 4.20
2766 5131 1.899534 CGATCCTCCGTCCTCTCCC 60.900 68.421 0.00 0.00 0.00 4.30
2767 5132 0.887387 CTCGATCCTCCGTCCTCTCC 60.887 65.000 0.00 0.00 0.00 3.71
2768 5133 0.887387 CCTCGATCCTCCGTCCTCTC 60.887 65.000 0.00 0.00 0.00 3.20
2769 5134 1.149627 CCTCGATCCTCCGTCCTCT 59.850 63.158 0.00 0.00 0.00 3.69
2770 5135 1.148723 TCCTCGATCCTCCGTCCTC 59.851 63.158 0.00 0.00 0.00 3.71
2771 5136 1.152922 GTCCTCGATCCTCCGTCCT 60.153 63.158 0.00 0.00 0.00 3.85
2772 5137 2.544698 CGTCCTCGATCCTCCGTCC 61.545 68.421 0.00 0.00 39.71 4.79
2773 5138 2.544698 CCGTCCTCGATCCTCCGTC 61.545 68.421 0.00 0.00 39.71 4.79
2774 5139 2.516460 CCGTCCTCGATCCTCCGT 60.516 66.667 0.00 0.00 39.71 4.69
2775 5140 1.787057 CTTCCGTCCTCGATCCTCCG 61.787 65.000 0.00 0.00 39.71 4.63
2776 5141 1.457009 CCTTCCGTCCTCGATCCTCC 61.457 65.000 0.00 0.00 39.71 4.30
2777 5142 0.465824 TCCTTCCGTCCTCGATCCTC 60.466 60.000 0.00 0.00 39.71 3.71
2778 5143 0.466555 CTCCTTCCGTCCTCGATCCT 60.467 60.000 0.00 0.00 39.71 3.24
2779 5144 1.457009 CCTCCTTCCGTCCTCGATCC 61.457 65.000 0.00 0.00 39.71 3.36
2780 5145 1.457009 CCCTCCTTCCGTCCTCGATC 61.457 65.000 0.00 0.00 39.71 3.69
2781 5146 1.455959 CCCTCCTTCCGTCCTCGAT 60.456 63.158 0.00 0.00 39.71 3.59
2782 5147 2.044252 CCCTCCTTCCGTCCTCGA 60.044 66.667 0.00 0.00 39.71 4.04
2783 5148 2.044252 TCCCTCCTTCCGTCCTCG 60.044 66.667 0.00 0.00 0.00 4.63
2784 5149 1.758906 CCTCCCTCCTTCCGTCCTC 60.759 68.421 0.00 0.00 0.00 3.71
2785 5150 2.231540 CTCCTCCCTCCTTCCGTCCT 62.232 65.000 0.00 0.00 0.00 3.85
2786 5151 1.758906 CTCCTCCCTCCTTCCGTCC 60.759 68.421 0.00 0.00 0.00 4.79
2787 5152 1.758906 CCTCCTCCCTCCTTCCGTC 60.759 68.421 0.00 0.00 0.00 4.79
2788 5153 2.364961 CCTCCTCCCTCCTTCCGT 59.635 66.667 0.00 0.00 0.00 4.69
2789 5154 2.444895 CCCTCCTCCCTCCTTCCG 60.445 72.222 0.00 0.00 0.00 4.30
2790 5155 2.040359 CCCCTCCTCCCTCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
2791 5156 1.979389 ATCCCCCTCCTCCCTCCTTC 61.979 65.000 0.00 0.00 0.00 3.46
2792 5157 0.636932 TATCCCCCTCCTCCCTCCTT 60.637 60.000 0.00 0.00 0.00 3.36
2793 5158 0.408769 ATATCCCCCTCCTCCCTCCT 60.409 60.000 0.00 0.00 0.00 3.69
2794 5159 0.498685 AATATCCCCCTCCTCCCTCC 59.501 60.000 0.00 0.00 0.00 4.30
2795 5160 1.988846 CAAATATCCCCCTCCTCCCTC 59.011 57.143 0.00 0.00 0.00 4.30
2796 5161 2.053251 GCAAATATCCCCCTCCTCCCT 61.053 57.143 0.00 0.00 0.00 4.20
2797 5162 0.405973 GCAAATATCCCCCTCCTCCC 59.594 60.000 0.00 0.00 0.00 4.30
2798 5163 1.074566 CTGCAAATATCCCCCTCCTCC 59.925 57.143 0.00 0.00 0.00 4.30
2799 5164 1.546548 GCTGCAAATATCCCCCTCCTC 60.547 57.143 0.00 0.00 0.00 3.71
2800 5165 0.480252 GCTGCAAATATCCCCCTCCT 59.520 55.000 0.00 0.00 0.00 3.69
2801 5166 0.890996 CGCTGCAAATATCCCCCTCC 60.891 60.000 0.00 0.00 0.00 4.30
2802 5167 0.108585 TCGCTGCAAATATCCCCCTC 59.891 55.000 0.00 0.00 0.00 4.30
2803 5168 0.550914 TTCGCTGCAAATATCCCCCT 59.449 50.000 0.00 0.00 0.00 4.79
2804 5169 1.270550 CATTCGCTGCAAATATCCCCC 59.729 52.381 0.00 0.00 0.00 5.40
2805 5170 1.270550 CCATTCGCTGCAAATATCCCC 59.729 52.381 0.00 0.00 0.00 4.81
2806 5171 1.956477 ACCATTCGCTGCAAATATCCC 59.044 47.619 0.00 0.00 0.00 3.85
2807 5172 2.030805 GGACCATTCGCTGCAAATATCC 60.031 50.000 0.00 0.31 0.00 2.59
2808 5173 2.880890 AGGACCATTCGCTGCAAATATC 59.119 45.455 0.00 0.00 0.00 1.63
2809 5174 2.620115 CAGGACCATTCGCTGCAAATAT 59.380 45.455 0.00 0.00 0.00 1.28
2810 5175 2.016318 CAGGACCATTCGCTGCAAATA 58.984 47.619 0.00 0.00 0.00 1.40
2811 5176 0.813184 CAGGACCATTCGCTGCAAAT 59.187 50.000 0.00 0.00 0.00 2.32
2812 5177 1.865788 GCAGGACCATTCGCTGCAAA 61.866 55.000 0.00 0.00 41.80 3.68
2813 5178 2.334946 GCAGGACCATTCGCTGCAA 61.335 57.895 0.00 0.00 41.80 4.08
2814 5179 2.747460 GCAGGACCATTCGCTGCA 60.747 61.111 0.00 0.00 41.80 4.41
2815 5180 3.869272 CGCAGGACCATTCGCTGC 61.869 66.667 0.00 0.00 40.20 5.25
2816 5181 2.125552 TCGCAGGACCATTCGCTG 60.126 61.111 0.00 0.00 0.00 5.18
2817 5182 2.125512 GTCGCAGGACCATTCGCT 60.126 61.111 0.00 0.00 37.19 4.93
2818 5183 3.554692 CGTCGCAGGACCATTCGC 61.555 66.667 0.00 0.00 40.17 4.70
2819 5184 2.180769 TCGTCGCAGGACCATTCG 59.819 61.111 0.00 0.00 40.17 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.