Multiple sequence alignment - TraesCS5A01G336900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G336900 chr5A 100.000 3704 0 0 1 3704 545596327 545592624 0.000000e+00 6841.0
1 TraesCS5A01G336900 chr5B 91.935 2914 160 37 828 3696 519007783 519004900 0.000000e+00 4010.0
2 TraesCS5A01G336900 chr5D 94.163 2570 104 22 831 3385 429733773 429731235 0.000000e+00 3873.0
3 TraesCS5A01G336900 chr5D 84.848 297 22 6 3421 3696 429731056 429730762 1.010000e-70 278.0
4 TraesCS5A01G336900 chr5D 83.929 168 10 10 690 845 429735692 429735530 1.070000e-30 145.0
5 TraesCS5A01G336900 chr5D 85.915 142 9 6 710 845 429734549 429734413 1.390000e-29 141.0
6 TraesCS5A01G336900 chr5D 85.915 142 9 6 710 845 429736223 429736087 1.390000e-29 141.0
7 TraesCS5A01G336900 chr5D 95.455 88 4 0 758 845 429737293 429737206 1.390000e-29 141.0
8 TraesCS5A01G336900 chr1B 77.477 111 18 5 411 519 374919719 374919824 3.990000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G336900 chr5A 545592624 545596327 3703 True 6841.0 6841 100.000000 1 3704 1 chr5A.!!$R1 3703
1 TraesCS5A01G336900 chr5B 519004900 519007783 2883 True 4010.0 4010 91.935000 828 3696 1 chr5B.!!$R1 2868
2 TraesCS5A01G336900 chr5D 429730762 429737293 6531 True 786.5 3873 88.370833 690 3696 6 chr5D.!!$R1 3006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 584 0.039527 GATTTTTCCGCTGGCGTTGT 60.040 50.0 13.84 0.0 37.81 3.32 F
655 656 0.175073 ACGGCGTGGAATAGGAAGTC 59.825 55.0 13.76 0.0 0.00 3.01 F
1107 3807 0.177604 CTCTCCTCCTCAAGCGCAAT 59.822 55.0 11.47 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 4506 0.173481 TGTAGAGCACGACATCAGGC 59.827 55.0 0.00 0.0 0.00 4.85 R
2307 5007 0.249489 GCTCCTGCATCCGTTCGTAT 60.249 55.0 0.00 0.0 39.41 3.06 R
2807 5507 0.034089 ATTAGGTGGCAGCAGAACCC 60.034 55.0 20.04 0.0 34.29 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.350552 CGCGGTTATTTTAAAATTCGTGG 57.649 39.130 18.14 11.78 0.00 4.94
23 24 4.852650 CGCGGTTATTTTAAAATTCGTGGT 59.147 37.500 18.14 0.00 0.00 4.16
25 26 5.286797 GCGGTTATTTTAAAATTCGTGGTCC 59.713 40.000 18.14 9.52 0.00 4.46
27 28 7.085746 CGGTTATTTTAAAATTCGTGGTCCTT 58.914 34.615 18.14 0.00 0.00 3.36
28 29 7.595875 CGGTTATTTTAAAATTCGTGGTCCTTT 59.404 33.333 18.14 0.00 0.00 3.11
29 30 9.263538 GGTTATTTTAAAATTCGTGGTCCTTTT 57.736 29.630 18.14 0.00 0.00 2.27
53 54 7.954788 TTTCAAAATGGATAACCCTTTTTCG 57.045 32.000 2.85 0.00 45.21 3.46
54 55 6.902771 TCAAAATGGATAACCCTTTTTCGA 57.097 33.333 2.85 0.00 45.21 3.71
56 57 7.902087 TCAAAATGGATAACCCTTTTTCGAAT 58.098 30.769 0.00 0.00 45.21 3.34
57 58 8.371699 TCAAAATGGATAACCCTTTTTCGAATT 58.628 29.630 0.00 0.00 45.21 2.17
58 59 8.442384 CAAAATGGATAACCCTTTTTCGAATTG 58.558 33.333 0.00 0.00 45.21 2.32
60 61 4.464597 TGGATAACCCTTTTTCGAATTGGG 59.535 41.667 21.62 21.62 43.26 4.12
65 66 3.649073 CCCTTTTTCGAATTGGGTGAAC 58.351 45.455 17.44 0.00 33.49 3.18
66 67 3.320826 CCCTTTTTCGAATTGGGTGAACT 59.679 43.478 17.44 0.00 33.49 3.01
67 68 4.202212 CCCTTTTTCGAATTGGGTGAACTT 60.202 41.667 17.44 0.00 33.49 2.66
69 70 5.815222 CCTTTTTCGAATTGGGTGAACTTTT 59.185 36.000 0.00 0.00 0.00 2.27
70 71 6.315144 CCTTTTTCGAATTGGGTGAACTTTTT 59.685 34.615 0.00 0.00 0.00 1.94
96 97 7.650834 TTTCAAATTCGATGAATGTTTTCCC 57.349 32.000 1.02 0.00 36.72 3.97
97 98 6.338214 TCAAATTCGATGAATGTTTTCCCA 57.662 33.333 0.00 0.00 32.14 4.37
98 99 6.753180 TCAAATTCGATGAATGTTTTCCCAA 58.247 32.000 0.00 0.00 32.14 4.12
100 101 7.877097 TCAAATTCGATGAATGTTTTCCCAAAT 59.123 29.630 0.00 0.00 32.14 2.32
101 102 8.505625 CAAATTCGATGAATGTTTTCCCAAATT 58.494 29.630 0.00 0.00 32.14 1.82
102 103 8.620116 AATTCGATGAATGTTTTCCCAAATTT 57.380 26.923 0.00 0.00 32.14 1.82
103 104 7.418840 TTCGATGAATGTTTTCCCAAATTTG 57.581 32.000 11.40 11.40 0.00 2.32
104 105 6.753180 TCGATGAATGTTTTCCCAAATTTGA 58.247 32.000 19.86 0.00 0.00 2.69
105 106 7.385267 TCGATGAATGTTTTCCCAAATTTGAT 58.615 30.769 19.86 0.14 0.00 2.57
106 107 8.526978 TCGATGAATGTTTTCCCAAATTTGATA 58.473 29.630 19.86 4.12 0.00 2.15
107 108 9.149225 CGATGAATGTTTTCCCAAATTTGATAA 57.851 29.630 19.86 9.98 0.00 1.75
110 111 9.844257 TGAATGTTTTCCCAAATTTGATAAACT 57.156 25.926 25.51 16.09 0.00 2.66
222 223 8.647143 ATTCGTGAATTTTGTCTCAAATTTGT 57.353 26.923 17.47 0.00 0.00 2.83
224 225 7.254137 TCGTGAATTTTGTCTCAAATTTGTGA 58.746 30.769 17.47 17.13 0.00 3.58
225 226 7.757173 TCGTGAATTTTGTCTCAAATTTGTGAA 59.243 29.630 21.10 9.08 33.14 3.18
226 227 8.379161 CGTGAATTTTGTCTCAAATTTGTGAAA 58.621 29.630 21.10 15.09 33.14 2.69
346 347 9.965748 TTTTTAAAATTTCGTGAGCTTTTTCTG 57.034 25.926 0.55 0.00 0.00 3.02
347 348 8.918961 TTTAAAATTTCGTGAGCTTTTTCTGA 57.081 26.923 0.00 0.00 0.00 3.27
349 350 7.826260 AAAATTTCGTGAGCTTTTTCTGAAA 57.174 28.000 0.00 0.00 31.63 2.69
350 351 8.424274 AAAATTTCGTGAGCTTTTTCTGAAAT 57.576 26.923 3.31 0.00 35.93 2.17
351 352 8.424274 AAATTTCGTGAGCTTTTTCTGAAATT 57.576 26.923 3.31 12.90 40.43 1.82
352 353 9.528018 AAATTTCGTGAGCTTTTTCTGAAATTA 57.472 25.926 16.30 0.00 39.30 1.40
354 355 9.696917 ATTTCGTGAGCTTTTTCTGAAATTATT 57.303 25.926 3.31 0.00 33.33 1.40
355 356 8.506140 TTCGTGAGCTTTTTCTGAAATTATTG 57.494 30.769 3.31 0.00 0.00 1.90
356 357 7.870826 TCGTGAGCTTTTTCTGAAATTATTGA 58.129 30.769 3.31 0.00 0.00 2.57
357 358 8.349245 TCGTGAGCTTTTTCTGAAATTATTGAA 58.651 29.630 3.31 0.00 0.00 2.69
358 359 8.420189 CGTGAGCTTTTTCTGAAATTATTGAAC 58.580 33.333 3.31 0.00 0.00 3.18
387 388 8.825667 TTTTAATATGCGAGCCTTTTCTTTTT 57.174 26.923 0.00 0.00 0.00 1.94
388 389 7.810766 TTAATATGCGAGCCTTTTCTTTTTG 57.189 32.000 0.00 0.00 0.00 2.44
389 390 5.643379 ATATGCGAGCCTTTTCTTTTTGA 57.357 34.783 0.00 0.00 0.00 2.69
390 391 3.791973 TGCGAGCCTTTTCTTTTTGAA 57.208 38.095 0.00 0.00 0.00 2.69
391 392 4.116747 TGCGAGCCTTTTCTTTTTGAAA 57.883 36.364 0.00 0.00 42.33 2.69
421 422 8.955061 AATCGTGAACATTCTTTAAATCTGTG 57.045 30.769 0.00 0.00 0.00 3.66
422 423 7.722795 TCGTGAACATTCTTTAAATCTGTGA 57.277 32.000 0.00 0.00 0.00 3.58
424 425 8.067784 TCGTGAACATTCTTTAAATCTGTGAAC 58.932 33.333 0.00 0.00 0.00 3.18
425 426 8.070171 CGTGAACATTCTTTAAATCTGTGAACT 58.930 33.333 0.00 0.00 0.00 3.01
427 428 9.734620 TGAACATTCTTTAAATCTGTGAACTTG 57.265 29.630 0.00 0.00 0.00 3.16
430 431 8.362639 ACATTCTTTAAATCTGTGAACTTGCAT 58.637 29.630 0.00 0.00 0.00 3.96
431 432 9.199982 CATTCTTTAAATCTGTGAACTTGCATT 57.800 29.630 0.00 0.00 0.00 3.56
432 433 9.768662 ATTCTTTAAATCTGTGAACTTGCATTT 57.231 25.926 0.00 0.00 0.00 2.32
433 434 9.598517 TTCTTTAAATCTGTGAACTTGCATTTT 57.401 25.926 0.00 0.00 0.00 1.82
458 459 5.224888 TGGAACAACACAACTACTATCGTC 58.775 41.667 0.00 0.00 31.92 4.20
459 460 4.624452 GGAACAACACAACTACTATCGTCC 59.376 45.833 0.00 0.00 0.00 4.79
460 461 5.464030 AACAACACAACTACTATCGTCCT 57.536 39.130 0.00 0.00 0.00 3.85
461 462 5.464030 ACAACACAACTACTATCGTCCTT 57.536 39.130 0.00 0.00 0.00 3.36
462 463 6.579666 ACAACACAACTACTATCGTCCTTA 57.420 37.500 0.00 0.00 0.00 2.69
463 464 6.985117 ACAACACAACTACTATCGTCCTTAA 58.015 36.000 0.00 0.00 0.00 1.85
464 465 7.088905 ACAACACAACTACTATCGTCCTTAAG 58.911 38.462 0.00 0.00 0.00 1.85
465 466 6.830873 ACACAACTACTATCGTCCTTAAGT 57.169 37.500 0.97 0.00 0.00 2.24
466 467 7.928307 ACACAACTACTATCGTCCTTAAGTA 57.072 36.000 0.97 0.00 0.00 2.24
467 468 8.517062 ACACAACTACTATCGTCCTTAAGTAT 57.483 34.615 0.97 0.00 0.00 2.12
468 469 8.964772 ACACAACTACTATCGTCCTTAAGTATT 58.035 33.333 0.97 0.00 0.00 1.89
469 470 9.798994 CACAACTACTATCGTCCTTAAGTATTT 57.201 33.333 0.97 0.00 0.00 1.40
472 473 9.727627 AACTACTATCGTCCTTAAGTATTTTCG 57.272 33.333 0.97 0.00 0.00 3.46
473 474 9.113838 ACTACTATCGTCCTTAAGTATTTTCGA 57.886 33.333 0.97 3.17 0.00 3.71
474 475 9.596677 CTACTATCGTCCTTAAGTATTTTCGAG 57.403 37.037 0.97 0.00 0.00 4.04
475 476 7.424001 ACTATCGTCCTTAAGTATTTTCGAGG 58.576 38.462 0.97 0.00 0.00 4.63
476 477 5.649782 TCGTCCTTAAGTATTTTCGAGGT 57.350 39.130 0.97 0.00 0.00 3.85
477 478 6.757897 TCGTCCTTAAGTATTTTCGAGGTA 57.242 37.500 0.97 0.00 0.00 3.08
478 479 6.555315 TCGTCCTTAAGTATTTTCGAGGTAC 58.445 40.000 0.97 0.00 0.00 3.34
480 481 7.552687 TCGTCCTTAAGTATTTTCGAGGTACTA 59.447 37.037 0.97 0.00 41.55 1.82
481 482 8.348507 CGTCCTTAAGTATTTTCGAGGTACTAT 58.651 37.037 0.97 2.55 41.55 2.12
482 483 9.460906 GTCCTTAAGTATTTTCGAGGTACTATG 57.539 37.037 0.97 2.53 41.55 2.23
483 484 8.636213 TCCTTAAGTATTTTCGAGGTACTATGG 58.364 37.037 0.97 8.80 41.55 2.74
484 485 8.636213 CCTTAAGTATTTTCGAGGTACTATGGA 58.364 37.037 0.97 0.00 41.55 3.41
488 489 9.978044 AAGTATTTTCGAGGTACTATGGATTAC 57.022 33.333 6.81 0.00 41.55 1.89
489 490 9.364653 AGTATTTTCGAGGTACTATGGATTACT 57.635 33.333 5.09 0.00 41.55 2.24
493 494 9.851686 TTTTCGAGGTACTATGGATTACTAGTA 57.148 33.333 0.00 0.00 41.55 1.82
494 495 8.839310 TTCGAGGTACTATGGATTACTAGTAC 57.161 38.462 0.91 10.11 44.89 2.73
501 502 9.447157 GTACTATGGATTACTAGTACCAGGTAG 57.553 40.741 15.33 14.37 42.02 3.18
502 503 6.947158 ACTATGGATTACTAGTACCAGGTAGC 59.053 42.308 15.33 0.00 35.84 3.58
503 504 5.399052 TGGATTACTAGTACCAGGTAGCT 57.601 43.478 0.91 3.41 0.00 3.32
504 505 5.383476 TGGATTACTAGTACCAGGTAGCTC 58.617 45.833 0.91 0.00 0.00 4.09
505 506 4.766373 GGATTACTAGTACCAGGTAGCTCC 59.234 50.000 0.91 0.00 0.00 4.70
506 507 4.868172 TTACTAGTACCAGGTAGCTCCA 57.132 45.455 0.91 0.00 39.02 3.86
508 509 2.581709 ACTAGTACCAGGTAGCTCCAGT 59.418 50.000 0.00 0.09 39.02 4.00
509 510 1.853963 AGTACCAGGTAGCTCCAGTG 58.146 55.000 0.00 0.00 39.02 3.66
510 511 0.824759 GTACCAGGTAGCTCCAGTGG 59.175 60.000 1.40 1.40 37.50 4.00
511 512 0.412244 TACCAGGTAGCTCCAGTGGT 59.588 55.000 9.54 15.55 44.00 4.16
512 513 0.473886 ACCAGGTAGCTCCAGTGGTT 60.474 55.000 9.54 0.00 40.48 3.67
513 514 1.203262 ACCAGGTAGCTCCAGTGGTTA 60.203 52.381 9.54 0.00 40.48 2.85
514 515 1.482593 CCAGGTAGCTCCAGTGGTTAG 59.517 57.143 9.54 0.68 39.02 2.34
515 516 1.134670 CAGGTAGCTCCAGTGGTTAGC 60.135 57.143 13.75 13.75 39.02 3.09
516 517 0.178301 GGTAGCTCCAGTGGTTAGCC 59.822 60.000 17.11 7.74 36.92 3.93
517 518 0.179108 GTAGCTCCAGTGGTTAGCCG 60.179 60.000 17.11 0.00 36.92 5.52
518 519 0.323999 TAGCTCCAGTGGTTAGCCGA 60.324 55.000 17.11 5.35 36.92 5.54
519 520 1.153549 GCTCCAGTGGTTAGCCGAG 60.154 63.158 9.54 0.00 37.67 4.63
520 521 1.153549 CTCCAGTGGTTAGCCGAGC 60.154 63.158 9.54 0.00 37.67 5.03
521 522 1.888436 CTCCAGTGGTTAGCCGAGCA 61.888 60.000 9.54 0.00 37.67 4.26
522 523 1.003839 CCAGTGGTTAGCCGAGCAA 60.004 57.895 0.00 0.00 37.67 3.91
524 525 0.729116 CAGTGGTTAGCCGAGCAATG 59.271 55.000 2.85 2.85 36.89 2.82
525 526 0.392998 AGTGGTTAGCCGAGCAATGG 60.393 55.000 0.00 0.00 37.67 3.16
536 537 3.561429 GCAATGGCGTGAGTTCGA 58.439 55.556 0.00 0.00 0.00 3.71
538 539 0.447801 GCAATGGCGTGAGTTCGAAT 59.552 50.000 0.00 0.00 0.00 3.34
540 541 1.062587 CAATGGCGTGAGTTCGAATCC 59.937 52.381 0.00 0.00 0.00 3.01
542 543 0.108804 TGGCGTGAGTTCGAATCCTC 60.109 55.000 0.00 4.90 0.00 3.71
543 544 0.108804 GGCGTGAGTTCGAATCCTCA 60.109 55.000 12.94 12.94 35.42 3.86
544 545 1.272781 GCGTGAGTTCGAATCCTCAG 58.727 55.000 16.34 12.18 38.33 3.35
545 546 1.272781 CGTGAGTTCGAATCCTCAGC 58.727 55.000 16.34 11.31 38.33 4.26
546 547 1.272781 GTGAGTTCGAATCCTCAGCG 58.727 55.000 16.34 0.00 38.33 5.18
547 548 0.888619 TGAGTTCGAATCCTCAGCGT 59.111 50.000 12.94 0.00 32.93 5.07
548 549 1.272781 GAGTTCGAATCCTCAGCGTG 58.727 55.000 0.00 0.00 0.00 5.34
549 550 0.888619 AGTTCGAATCCTCAGCGTGA 59.111 50.000 0.00 0.00 0.00 4.35
550 551 0.992802 GTTCGAATCCTCAGCGTGAC 59.007 55.000 0.00 0.00 0.00 3.67
552 553 0.171231 TCGAATCCTCAGCGTGACAG 59.829 55.000 0.00 0.00 0.00 3.51
553 554 1.416813 CGAATCCTCAGCGTGACAGC 61.417 60.000 0.00 0.00 37.41 4.40
556 557 0.322975 ATCCTCAGCGTGACAGCTTT 59.677 50.000 0.00 0.00 46.80 3.51
557 558 0.601046 TCCTCAGCGTGACAGCTTTG 60.601 55.000 0.00 0.00 46.80 2.77
558 559 0.882042 CCTCAGCGTGACAGCTTTGT 60.882 55.000 0.00 0.00 46.80 2.83
559 560 0.940126 CTCAGCGTGACAGCTTTGTT 59.060 50.000 0.00 0.00 46.80 2.83
561 562 1.742831 TCAGCGTGACAGCTTTGTTTT 59.257 42.857 0.00 0.00 46.80 2.43
562 563 2.939756 TCAGCGTGACAGCTTTGTTTTA 59.060 40.909 0.00 0.00 46.80 1.52
563 564 3.002246 TCAGCGTGACAGCTTTGTTTTAG 59.998 43.478 0.00 0.00 46.80 1.85
564 565 2.290641 AGCGTGACAGCTTTGTTTTAGG 59.709 45.455 0.00 0.00 46.80 2.69
565 566 2.289547 GCGTGACAGCTTTGTTTTAGGA 59.710 45.455 0.00 0.00 0.00 2.94
566 567 3.058224 GCGTGACAGCTTTGTTTTAGGAT 60.058 43.478 0.00 0.00 0.00 3.24
567 568 4.556699 GCGTGACAGCTTTGTTTTAGGATT 60.557 41.667 0.00 0.00 0.00 3.01
568 569 5.519722 CGTGACAGCTTTGTTTTAGGATTT 58.480 37.500 0.00 0.00 0.00 2.17
571 572 7.305993 CGTGACAGCTTTGTTTTAGGATTTTTC 60.306 37.037 0.00 0.00 0.00 2.29
572 573 6.983890 TGACAGCTTTGTTTTAGGATTTTTCC 59.016 34.615 0.00 0.00 0.00 3.13
573 574 5.983118 ACAGCTTTGTTTTAGGATTTTTCCG 59.017 36.000 0.00 0.00 34.28 4.30
575 576 4.988540 GCTTTGTTTTAGGATTTTTCCGCT 59.011 37.500 0.00 0.00 34.28 5.52
577 578 4.513198 TGTTTTAGGATTTTTCCGCTGG 57.487 40.909 0.00 0.00 34.28 4.85
578 579 3.250744 GTTTTAGGATTTTTCCGCTGGC 58.749 45.455 0.00 0.00 34.28 4.85
579 580 1.091537 TTAGGATTTTTCCGCTGGCG 58.908 50.000 8.08 8.08 39.44 5.69
581 582 0.893727 AGGATTTTTCCGCTGGCGTT 60.894 50.000 13.84 0.00 37.81 4.84
582 583 0.732538 GGATTTTTCCGCTGGCGTTG 60.733 55.000 13.84 0.00 37.81 4.10
583 584 0.039527 GATTTTTCCGCTGGCGTTGT 60.040 50.000 13.84 0.00 37.81 3.32
584 585 0.318614 ATTTTTCCGCTGGCGTTGTG 60.319 50.000 13.84 0.00 37.81 3.33
586 587 2.329678 TTTTCCGCTGGCGTTGTGTG 62.330 55.000 13.84 0.00 37.81 3.82
587 588 4.539083 TCCGCTGGCGTTGTGTGT 62.539 61.111 13.84 0.00 37.81 3.72
588 589 3.582120 CCGCTGGCGTTGTGTGTT 61.582 61.111 13.84 0.00 37.81 3.32
589 590 2.052237 CGCTGGCGTTGTGTGTTC 60.052 61.111 6.83 0.00 34.35 3.18
591 592 2.819552 GCTGGCGTTGTGTGTTCGT 61.820 57.895 0.00 0.00 0.00 3.85
592 593 1.011242 CTGGCGTTGTGTGTTCGTG 60.011 57.895 0.00 0.00 0.00 4.35
593 594 2.326550 GGCGTTGTGTGTTCGTGG 59.673 61.111 0.00 0.00 0.00 4.94
595 596 2.326550 CGTTGTGTGTTCGTGGGC 59.673 61.111 0.00 0.00 0.00 5.36
597 598 1.355210 GTTGTGTGTTCGTGGGCTG 59.645 57.895 0.00 0.00 0.00 4.85
599 600 2.203153 GTGTGTTCGTGGGCTGGT 60.203 61.111 0.00 0.00 0.00 4.00
601 602 2.426023 GTGTTCGTGGGCTGGTCT 59.574 61.111 0.00 0.00 0.00 3.85
603 604 0.669625 GTGTTCGTGGGCTGGTCTAC 60.670 60.000 0.00 0.00 0.00 2.59
613 614 3.390521 TGGTCTACCAGGGCGCTG 61.391 66.667 23.12 23.12 42.01 5.18
614 615 4.840005 GGTCTACCAGGGCGCTGC 62.840 72.222 24.51 10.69 35.64 5.25
616 617 3.774528 TCTACCAGGGCGCTGCAG 61.775 66.667 24.51 21.18 0.00 4.41
630 631 3.730761 GCAGCGAGCACCAGTTGG 61.731 66.667 0.00 0.00 44.79 3.77
640 641 4.296265 CCAGTTGGGTTAGACGGC 57.704 61.111 0.00 0.00 0.00 5.68
641 642 1.740296 CCAGTTGGGTTAGACGGCG 60.740 63.158 4.80 4.80 0.00 6.46
642 643 1.005394 CAGTTGGGTTAGACGGCGT 60.005 57.895 14.65 14.65 0.00 5.68
643 644 1.005394 AGTTGGGTTAGACGGCGTG 60.005 57.895 21.19 0.00 0.00 5.34
644 645 2.030958 GTTGGGTTAGACGGCGTGG 61.031 63.158 21.19 0.00 0.00 4.94
646 647 1.756408 TTGGGTTAGACGGCGTGGAA 61.756 55.000 21.19 8.38 0.00 3.53
648 649 0.461135 GGGTTAGACGGCGTGGAATA 59.539 55.000 21.19 1.55 0.00 1.75
649 650 1.537562 GGGTTAGACGGCGTGGAATAG 60.538 57.143 21.19 0.00 0.00 1.73
650 651 1.537562 GGTTAGACGGCGTGGAATAGG 60.538 57.143 21.19 0.00 0.00 2.57
651 652 1.406539 GTTAGACGGCGTGGAATAGGA 59.593 52.381 21.19 0.00 0.00 2.94
652 653 1.766494 TAGACGGCGTGGAATAGGAA 58.234 50.000 21.19 0.00 0.00 3.36
653 654 0.460311 AGACGGCGTGGAATAGGAAG 59.540 55.000 21.19 0.00 0.00 3.46
655 656 0.175073 ACGGCGTGGAATAGGAAGTC 59.825 55.000 13.76 0.00 0.00 3.01
656 657 0.529992 CGGCGTGGAATAGGAAGTCC 60.530 60.000 0.00 0.00 40.41 3.85
657 658 0.179054 GGCGTGGAATAGGAAGTCCC 60.179 60.000 0.00 0.00 39.19 4.46
658 659 0.179054 GCGTGGAATAGGAAGTCCCC 60.179 60.000 0.00 0.00 39.19 4.81
659 660 1.497161 CGTGGAATAGGAAGTCCCCT 58.503 55.000 0.00 0.00 39.19 4.79
662 663 3.181468 CGTGGAATAGGAAGTCCCCTAAC 60.181 52.174 0.00 0.00 41.71 2.34
663 664 3.778629 GTGGAATAGGAAGTCCCCTAACA 59.221 47.826 0.00 0.00 41.71 2.41
664 665 4.037927 TGGAATAGGAAGTCCCCTAACAG 58.962 47.826 0.00 0.00 41.71 3.16
667 668 5.396548 GGAATAGGAAGTCCCCTAACAGTTC 60.397 48.000 0.00 0.00 41.71 3.01
668 669 2.986050 AGGAAGTCCCCTAACAGTTCA 58.014 47.619 0.00 0.00 34.07 3.18
670 671 2.638363 GGAAGTCCCCTAACAGTTCACT 59.362 50.000 0.00 0.00 0.00 3.41
671 672 3.836562 GGAAGTCCCCTAACAGTTCACTA 59.163 47.826 0.00 0.00 0.00 2.74
672 673 4.285260 GGAAGTCCCCTAACAGTTCACTAA 59.715 45.833 0.00 0.00 0.00 2.24
673 674 5.221783 GGAAGTCCCCTAACAGTTCACTAAA 60.222 44.000 0.00 0.00 0.00 1.85
674 675 5.224821 AGTCCCCTAACAGTTCACTAAAC 57.775 43.478 0.00 0.00 38.21 2.01
687 688 7.251704 AGTTCACTAAACTGTCAACTTCATG 57.748 36.000 0.00 0.00 46.61 3.07
689 690 7.716998 AGTTCACTAAACTGTCAACTTCATGAT 59.283 33.333 0.00 0.00 46.61 2.45
691 692 9.554395 TTCACTAAACTGTCAACTTCATGATTA 57.446 29.630 0.00 0.00 0.00 1.75
699 2728 8.849168 ACTGTCAACTTCATGATTATTGTTTCA 58.151 29.630 0.00 3.67 0.00 2.69
734 2770 8.787852 GGATTATTGTTCCTTCATTCATAGGTC 58.212 37.037 0.00 0.00 33.15 3.85
735 2771 9.566432 GATTATTGTTCCTTCATTCATAGGTCT 57.434 33.333 0.00 0.00 33.15 3.85
736 2772 8.964476 TTATTGTTCCTTCATTCATAGGTCTC 57.036 34.615 0.00 0.00 33.15 3.36
738 2774 4.782691 TGTTCCTTCATTCATAGGTCTCCA 59.217 41.667 0.00 0.00 33.15 3.86
740 2776 5.557576 TCCTTCATTCATAGGTCTCCATG 57.442 43.478 0.00 0.00 33.15 3.66
741 2777 4.971282 TCCTTCATTCATAGGTCTCCATGT 59.029 41.667 0.00 0.00 33.15 3.21
742 2778 5.061853 CCTTCATTCATAGGTCTCCATGTG 58.938 45.833 0.00 0.00 0.00 3.21
743 2779 5.163269 CCTTCATTCATAGGTCTCCATGTGA 60.163 44.000 0.00 0.00 0.00 3.58
745 2781 5.861727 TCATTCATAGGTCTCCATGTGATG 58.138 41.667 0.00 0.00 0.00 3.07
754 2790 3.583054 CCATGTGATGGCCTCTTGT 57.417 52.632 3.32 0.00 44.70 3.16
755 2791 1.386533 CCATGTGATGGCCTCTTGTC 58.613 55.000 3.32 0.00 44.70 3.18
756 2792 1.064906 CCATGTGATGGCCTCTTGTCT 60.065 52.381 3.32 0.00 44.70 3.41
757 2793 2.619849 CCATGTGATGGCCTCTTGTCTT 60.620 50.000 3.32 0.00 44.70 3.01
758 2794 2.189594 TGTGATGGCCTCTTGTCTTG 57.810 50.000 3.32 0.00 0.00 3.02
759 2795 0.807496 GTGATGGCCTCTTGTCTTGC 59.193 55.000 3.32 0.00 0.00 4.01
760 2796 0.401356 TGATGGCCTCTTGTCTTGCA 59.599 50.000 3.32 0.00 0.00 4.08
761 2797 0.807496 GATGGCCTCTTGTCTTGCAC 59.193 55.000 3.32 0.00 0.00 4.57
763 2799 1.073897 GGCCTCTTGTCTTGCACCT 59.926 57.895 0.00 0.00 0.00 4.00
804 2841 6.421485 ACTTCAAGACTGATAGGCAATCATT 58.579 36.000 0.00 0.00 43.70 2.57
852 3543 2.358898 GCTCTTTTGCTTGTGGTTGAGA 59.641 45.455 0.00 0.00 0.00 3.27
902 3594 1.900245 TGAGCTTCTCTGCATGCAAA 58.100 45.000 22.88 12.39 34.99 3.68
909 3601 1.198408 TCTCTGCATGCAAAAGCTTCG 59.802 47.619 22.88 7.42 0.00 3.79
1002 3697 1.402968 CAGCCTGAACCCATCGAAATG 59.597 52.381 0.00 0.00 0.00 2.32
1013 3713 1.672881 CATCGAAATGGCTTCAGACCC 59.327 52.381 0.00 0.00 33.17 4.46
1030 3730 0.774908 CCCAAACCCTGAACCCTACA 59.225 55.000 0.00 0.00 0.00 2.74
1107 3807 0.177604 CTCTCCTCCTCAAGCGCAAT 59.822 55.000 11.47 0.00 0.00 3.56
1109 3809 1.150567 CTCCTCCTCAAGCGCAATCG 61.151 60.000 11.47 0.00 39.07 3.34
1128 3828 1.293498 CCACCTCTCCACCACTTCG 59.707 63.158 0.00 0.00 0.00 3.79
1137 3837 4.070552 ACCACTTCGCGCCTCCTC 62.071 66.667 0.00 0.00 0.00 3.71
1332 4032 3.546543 CCGCCATTCGAGCCCCTA 61.547 66.667 0.00 0.00 41.67 3.53
1603 4303 4.593864 GCTCCATCCCCGTCTCGC 62.594 72.222 0.00 0.00 0.00 5.03
1877 4577 1.803519 GTCTCGACAAGGCAGAGCG 60.804 63.158 0.00 0.00 32.42 5.03
1995 4695 2.964310 GCAGGAGCTCCTCTGCCAA 61.964 63.158 33.06 0.00 46.65 4.52
2037 4737 0.591170 CGAACACGGCAACCTTCAAT 59.409 50.000 0.00 0.00 0.00 2.57
2050 4750 0.742505 CTTCAATGCCATCATGCGGT 59.257 50.000 3.30 0.00 32.23 5.68
2266 4966 2.086869 CGTTCAATCCCATGCTGAAGT 58.913 47.619 0.00 0.00 30.00 3.01
2562 5262 1.574428 CTTGAAACCCACGAAGCCG 59.426 57.895 0.00 0.00 42.50 5.52
2710 5410 5.316770 CAGTAGCTGCTTCGTAAACATTTC 58.683 41.667 7.79 0.00 0.00 2.17
2719 5419 6.128117 TGCTTCGTAAACATTTCTTCCCATAC 60.128 38.462 0.00 0.00 0.00 2.39
2720 5420 6.128117 GCTTCGTAAACATTTCTTCCCATACA 60.128 38.462 0.00 0.00 0.00 2.29
2734 5434 3.335183 TCCCATACAATCCAAAAGGACCA 59.665 43.478 0.00 0.00 0.00 4.02
2735 5435 4.093011 CCCATACAATCCAAAAGGACCAA 58.907 43.478 0.00 0.00 0.00 3.67
2755 5455 4.142730 CCAAGAAGTTTCAGCTATCAGCAC 60.143 45.833 0.38 0.00 45.56 4.40
2757 5457 2.015736 AGTTTCAGCTATCAGCACGG 57.984 50.000 0.38 0.00 45.56 4.94
2767 5467 3.987683 GCTATCAGCACGGTAATGGAACA 60.988 47.826 0.00 0.00 42.52 3.18
2806 5506 4.276678 TCCAGTGCAGAAACAAAGAGAATG 59.723 41.667 0.00 0.00 0.00 2.67
2807 5507 4.543692 CAGTGCAGAAACAAAGAGAATGG 58.456 43.478 0.00 0.00 0.00 3.16
2820 5522 1.304381 GAATGGGGTTCTGCTGCCA 60.304 57.895 0.00 0.00 33.89 4.92
3087 5793 6.839134 TCTGGTGTGTTGTATCCTAGTATCAT 59.161 38.462 0.00 0.00 0.00 2.45
3158 5864 6.744112 TCGAATTCCTACACTGCAAAATTTT 58.256 32.000 0.00 0.00 0.00 1.82
3238 5944 6.049149 TGCTTCCTGATGTTTACTAGTATGC 58.951 40.000 2.79 0.59 0.00 3.14
3254 5960 5.269505 AGTATGCCTTGCTAGACTGTTAG 57.730 43.478 0.00 0.00 0.00 2.34
3315 6021 8.031864 ACTTCTTATCTGTTGTAGTGTCTCATG 58.968 37.037 0.00 0.00 0.00 3.07
3423 6145 2.033801 CGACGGACCGTACCTGATTAAT 59.966 50.000 21.79 0.00 41.37 1.40
3424 6146 3.636381 GACGGACCGTACCTGATTAATC 58.364 50.000 21.79 8.60 41.37 1.75
3425 6147 3.025978 ACGGACCGTACCTGATTAATCA 58.974 45.455 20.23 17.07 38.73 2.57
3426 6148 3.067742 ACGGACCGTACCTGATTAATCAG 59.932 47.826 30.67 30.67 45.14 2.90
3444 6294 1.377333 GCCGGGTTCTTCCTCCTTG 60.377 63.158 2.18 0.00 36.25 3.61
3482 6332 2.810650 CTGTACTACACTGATTCGGCC 58.189 52.381 0.00 0.00 0.00 6.13
3497 6347 0.101759 CGGCCAAGCAAATCATCCAG 59.898 55.000 2.24 0.00 0.00 3.86
3501 6351 1.551430 CCAAGCAAATCATCCAGCCAA 59.449 47.619 0.00 0.00 0.00 4.52
3512 6362 1.855295 TCCAGCCAACGTACCTGATA 58.145 50.000 10.51 0.00 0.00 2.15
3515 6365 2.483876 CAGCCAACGTACCTGATATGG 58.516 52.381 4.54 0.00 0.00 2.74
3520 6370 4.369182 CCAACGTACCTGATATGGTTCTC 58.631 47.826 0.00 0.00 41.22 2.87
3532 6382 2.951229 TGGTTCTCCTTTCTTGGGTC 57.049 50.000 0.00 0.00 34.23 4.46
3554 6415 4.160439 TCATGTCTGGGAAAGCTGTACTAG 59.840 45.833 0.00 0.00 0.00 2.57
3567 6428 5.191426 AGCTGTACTAGACTAATTCGGTGA 58.809 41.667 0.00 0.00 0.00 4.02
3574 6435 6.407202 ACTAGACTAATTCGGTGAAGCAAAT 58.593 36.000 0.00 0.00 0.00 2.32
3591 6452 2.505819 CAAATCAGTACCCTGTAGGCCT 59.494 50.000 11.78 11.78 40.58 5.19
3596 6457 1.063114 AGTACCCTGTAGGCCTGTAGG 60.063 57.143 23.57 23.57 40.58 3.18
3597 6458 1.013197 TACCCTGTAGGCCTGTAGGT 58.987 55.000 26.47 22.81 40.58 3.08
3598 6459 1.013197 ACCCTGTAGGCCTGTAGGTA 58.987 55.000 26.47 1.63 40.58 3.08
3599 6460 1.342774 ACCCTGTAGGCCTGTAGGTAC 60.343 57.143 26.47 13.71 40.58 3.34
3600 6461 1.063114 CCCTGTAGGCCTGTAGGTACT 60.063 57.143 26.47 1.67 46.37 2.73
3601 6462 2.176364 CCCTGTAGGCCTGTAGGTACTA 59.824 54.545 26.47 0.00 41.75 1.82
3615 6487 4.216411 AGGTACTACCATGCGACATTTT 57.784 40.909 8.01 0.00 41.95 1.82
3622 6494 1.811965 CCATGCGACATTTTCACAGGA 59.188 47.619 0.00 0.00 0.00 3.86
3628 6500 4.213270 TGCGACATTTTCACAGGACTTTAG 59.787 41.667 0.00 0.00 0.00 1.85
3647 6519 5.645056 TTAGGGTTAGGATGCATCAATCA 57.355 39.130 27.25 6.83 0.00 2.57
3650 6522 4.079558 AGGGTTAGGATGCATCAATCACTT 60.080 41.667 27.25 8.62 0.00 3.16
3655 6527 7.446625 GGTTAGGATGCATCAATCACTTATCTT 59.553 37.037 27.25 0.00 0.00 2.40
3667 6539 6.743575 ATCACTTATCTTGGTTGTTAGTGC 57.256 37.500 0.00 0.00 0.00 4.40
3696 6568 0.527113 CACGGCTTGGCATTCATCAA 59.473 50.000 0.00 0.00 0.00 2.57
3697 6569 0.527565 ACGGCTTGGCATTCATCAAC 59.472 50.000 0.00 0.00 0.00 3.18
3698 6570 0.179129 CGGCTTGGCATTCATCAACC 60.179 55.000 0.00 0.00 0.00 3.77
3699 6571 0.179129 GGCTTGGCATTCATCAACCG 60.179 55.000 0.00 0.00 0.00 4.44
3700 6572 0.810648 GCTTGGCATTCATCAACCGA 59.189 50.000 0.00 0.00 0.00 4.69
3701 6573 1.468054 GCTTGGCATTCATCAACCGAC 60.468 52.381 0.00 0.00 0.00 4.79
3702 6574 0.801872 TTGGCATTCATCAACCGACG 59.198 50.000 0.00 0.00 0.00 5.12
3703 6575 0.321210 TGGCATTCATCAACCGACGT 60.321 50.000 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.852650 ACCACGAATTTTAAAATAACCGCG 59.147 37.500 13.68 13.59 0.00 6.46
3 4 8.821147 AAAGGACCACGAATTTTAAAATAACC 57.179 30.769 13.68 9.33 0.00 2.85
36 37 5.128663 CCCAATTCGAAAAAGGGTTATCCAT 59.871 40.000 19.37 0.00 38.24 3.41
37 38 4.464597 CCCAATTCGAAAAAGGGTTATCCA 59.535 41.667 19.37 0.00 38.24 3.41
45 46 4.584327 AGTTCACCCAATTCGAAAAAGG 57.416 40.909 0.00 5.52 0.00 3.11
46 47 6.902224 AAAAGTTCACCCAATTCGAAAAAG 57.098 33.333 0.00 0.00 0.00 2.27
70 71 8.555361 GGGAAAACATTCATCGAATTTGAAAAA 58.445 29.630 4.18 0.00 36.72 1.94
71 72 7.712639 TGGGAAAACATTCATCGAATTTGAAAA 59.287 29.630 4.18 0.00 36.72 2.29
72 73 7.212976 TGGGAAAACATTCATCGAATTTGAAA 58.787 30.769 4.18 0.00 36.72 2.69
73 74 6.753180 TGGGAAAACATTCATCGAATTTGAA 58.247 32.000 0.00 2.61 37.49 2.69
74 75 6.338214 TGGGAAAACATTCATCGAATTTGA 57.662 33.333 0.00 0.00 28.87 2.69
76 77 8.620116 AATTTGGGAAAACATTCATCGAATTT 57.380 26.923 0.00 0.00 28.87 1.82
77 78 8.505625 CAAATTTGGGAAAACATTCATCGAATT 58.494 29.630 10.49 0.00 28.87 2.17
78 79 7.877097 TCAAATTTGGGAAAACATTCATCGAAT 59.123 29.630 17.90 0.00 31.86 3.34
81 82 7.599630 ATCAAATTTGGGAAAACATTCATCG 57.400 32.000 17.90 0.00 0.00 3.84
196 197 9.097257 ACAAATTTGAGACAAAATTCACGAATT 57.903 25.926 24.64 0.00 42.35 2.17
197 198 8.542132 CACAAATTTGAGACAAAATTCACGAAT 58.458 29.630 24.64 0.00 38.49 3.34
198 199 7.757173 TCACAAATTTGAGACAAAATTCACGAA 59.243 29.630 24.64 0.00 38.49 3.85
199 200 7.254137 TCACAAATTTGAGACAAAATTCACGA 58.746 30.769 24.64 0.00 38.49 4.35
200 201 7.448588 TCACAAATTTGAGACAAAATTCACG 57.551 32.000 24.64 0.00 38.49 4.35
320 321 9.965748 CAGAAAAAGCTCACGAAATTTTAAAAA 57.034 25.926 4.44 0.00 0.00 1.94
321 322 9.360093 TCAGAAAAAGCTCACGAAATTTTAAAA 57.640 25.926 2.51 2.51 0.00 1.52
322 323 8.918961 TCAGAAAAAGCTCACGAAATTTTAAA 57.081 26.923 0.00 0.00 0.00 1.52
324 325 8.918961 TTTCAGAAAAAGCTCACGAAATTTTA 57.081 26.923 0.00 0.00 0.00 1.52
325 326 7.826260 TTTCAGAAAAAGCTCACGAAATTTT 57.174 28.000 0.00 0.00 0.00 1.82
326 327 8.424274 AATTTCAGAAAAAGCTCACGAAATTT 57.576 26.923 0.00 0.00 36.89 1.82
327 328 9.696917 ATAATTTCAGAAAAAGCTCACGAAATT 57.303 25.926 16.50 16.50 39.90 1.82
328 329 9.696917 AATAATTTCAGAAAAAGCTCACGAAAT 57.303 25.926 0.00 0.00 34.08 2.17
329 330 8.967218 CAATAATTTCAGAAAAAGCTCACGAAA 58.033 29.630 0.00 0.00 0.00 3.46
330 331 8.349245 TCAATAATTTCAGAAAAAGCTCACGAA 58.651 29.630 0.00 0.00 0.00 3.85
332 333 8.420189 GTTCAATAATTTCAGAAAAAGCTCACG 58.580 33.333 0.00 0.00 0.00 4.35
333 334 9.468532 AGTTCAATAATTTCAGAAAAAGCTCAC 57.531 29.630 0.00 0.00 0.00 3.51
362 363 8.707839 CAAAAAGAAAAGGCTCGCATATTAAAA 58.292 29.630 0.00 0.00 0.00 1.52
365 366 7.151999 TCAAAAAGAAAAGGCTCGCATATTA 57.848 32.000 0.00 0.00 0.00 0.98
366 367 6.024552 TCAAAAAGAAAAGGCTCGCATATT 57.975 33.333 0.00 0.00 0.00 1.28
367 368 5.643379 TCAAAAAGAAAAGGCTCGCATAT 57.357 34.783 0.00 0.00 0.00 1.78
369 370 4.320608 TTCAAAAAGAAAAGGCTCGCAT 57.679 36.364 0.00 0.00 32.05 4.73
370 371 3.791973 TTCAAAAAGAAAAGGCTCGCA 57.208 38.095 0.00 0.00 32.05 5.10
396 397 8.783093 TCACAGATTTAAAGAATGTTCACGATT 58.217 29.630 0.00 0.00 0.00 3.34
397 398 8.322906 TCACAGATTTAAAGAATGTTCACGAT 57.677 30.769 0.00 0.00 0.00 3.73
398 399 7.722795 TCACAGATTTAAAGAATGTTCACGA 57.277 32.000 0.00 0.00 0.00 4.35
399 400 8.070171 AGTTCACAGATTTAAAGAATGTTCACG 58.930 33.333 0.00 0.00 0.00 4.35
400 401 9.736023 AAGTTCACAGATTTAAAGAATGTTCAC 57.264 29.630 0.00 0.00 0.00 3.18
401 402 9.734620 CAAGTTCACAGATTTAAAGAATGTTCA 57.265 29.630 0.00 0.00 0.00 3.18
402 403 8.694394 GCAAGTTCACAGATTTAAAGAATGTTC 58.306 33.333 0.00 0.00 0.00 3.18
404 405 7.715657 TGCAAGTTCACAGATTTAAAGAATGT 58.284 30.769 0.00 0.00 0.00 2.71
407 408 9.598517 AAAATGCAAGTTCACAGATTTAAAGAA 57.401 25.926 0.00 0.00 0.00 2.52
431 432 7.411274 CGATAGTAGTTGTGTTGTTCCAAAAA 58.589 34.615 0.00 0.00 0.00 1.94
432 433 6.950545 CGATAGTAGTTGTGTTGTTCCAAAA 58.049 36.000 0.00 0.00 0.00 2.44
433 434 6.533819 CGATAGTAGTTGTGTTGTTCCAAA 57.466 37.500 0.00 0.00 0.00 3.28
451 452 7.424001 ACCTCGAAAATACTTAAGGACGATAG 58.576 38.462 7.53 1.56 46.19 2.08
452 453 7.338800 ACCTCGAAAATACTTAAGGACGATA 57.661 36.000 7.53 0.00 0.00 2.92
453 454 6.218108 ACCTCGAAAATACTTAAGGACGAT 57.782 37.500 7.53 0.00 0.00 3.73
454 455 5.649782 ACCTCGAAAATACTTAAGGACGA 57.350 39.130 7.53 2.74 0.00 4.20
455 456 6.558909 AGTACCTCGAAAATACTTAAGGACG 58.441 40.000 7.53 0.00 0.00 4.79
458 459 8.636213 TCCATAGTACCTCGAAAATACTTAAGG 58.364 37.037 7.53 7.95 31.65 2.69
462 463 9.978044 GTAATCCATAGTACCTCGAAAATACTT 57.022 33.333 7.88 0.00 31.65 2.24
463 464 9.364653 AGTAATCCATAGTACCTCGAAAATACT 57.635 33.333 7.74 7.74 33.73 2.12
466 467 9.364653 ACTAGTAATCCATAGTACCTCGAAAAT 57.635 33.333 0.00 0.00 30.50 1.82
467 468 8.757982 ACTAGTAATCCATAGTACCTCGAAAA 57.242 34.615 0.00 0.00 30.50 2.29
468 469 9.277783 GTACTAGTAATCCATAGTACCTCGAAA 57.722 37.037 3.61 0.00 44.37 3.46
469 470 8.839310 GTACTAGTAATCCATAGTACCTCGAA 57.161 38.462 3.61 0.00 44.37 3.71
476 477 8.105829 GCTACCTGGTACTAGTAATCCATAGTA 58.894 40.741 11.56 13.66 34.21 1.82
477 478 6.947158 GCTACCTGGTACTAGTAATCCATAGT 59.053 42.308 11.56 13.36 36.28 2.12
478 479 7.176490 AGCTACCTGGTACTAGTAATCCATAG 58.824 42.308 11.56 11.85 0.00 2.23
479 480 7.100068 AGCTACCTGGTACTAGTAATCCATA 57.900 40.000 11.56 3.68 0.00 2.74
480 481 5.966684 AGCTACCTGGTACTAGTAATCCAT 58.033 41.667 11.56 2.82 0.00 3.41
481 482 5.383476 GAGCTACCTGGTACTAGTAATCCA 58.617 45.833 3.61 8.05 0.00 3.41
482 483 4.766373 GGAGCTACCTGGTACTAGTAATCC 59.234 50.000 3.61 3.33 35.41 3.01
483 484 5.383476 TGGAGCTACCTGGTACTAGTAATC 58.617 45.833 3.61 0.98 39.86 1.75
484 485 5.103601 ACTGGAGCTACCTGGTACTAGTAAT 60.104 44.000 3.61 0.00 41.11 1.89
486 487 3.784763 ACTGGAGCTACCTGGTACTAGTA 59.215 47.826 1.49 0.00 41.11 1.82
487 488 2.581709 ACTGGAGCTACCTGGTACTAGT 59.418 50.000 1.49 0.00 41.11 2.57
488 489 2.952978 CACTGGAGCTACCTGGTACTAG 59.047 54.545 1.49 3.80 41.11 2.57
489 490 2.357881 CCACTGGAGCTACCTGGTACTA 60.358 54.545 1.49 0.00 41.11 1.82
490 491 1.619977 CCACTGGAGCTACCTGGTACT 60.620 57.143 1.49 5.62 41.11 2.73
491 492 0.824759 CCACTGGAGCTACCTGGTAC 59.175 60.000 1.49 0.61 41.11 3.34
493 494 0.473886 AACCACTGGAGCTACCTGGT 60.474 55.000 9.25 9.25 45.40 4.00
494 495 1.482593 CTAACCACTGGAGCTACCTGG 59.517 57.143 8.02 8.02 41.11 4.45
495 496 1.134670 GCTAACCACTGGAGCTACCTG 60.135 57.143 0.71 0.46 42.26 4.00
496 497 1.196012 GCTAACCACTGGAGCTACCT 58.804 55.000 0.71 0.00 39.86 3.08
497 498 0.178301 GGCTAACCACTGGAGCTACC 59.822 60.000 0.71 0.00 36.43 3.18
498 499 0.179108 CGGCTAACCACTGGAGCTAC 60.179 60.000 0.71 0.00 36.43 3.58
500 501 1.608717 CTCGGCTAACCACTGGAGCT 61.609 60.000 0.71 0.00 36.43 4.09
501 502 1.153549 CTCGGCTAACCACTGGAGC 60.154 63.158 0.71 0.77 34.57 4.70
502 503 1.153549 GCTCGGCTAACCACTGGAG 60.154 63.158 0.71 0.00 34.57 3.86
503 504 1.476845 TTGCTCGGCTAACCACTGGA 61.477 55.000 0.71 0.00 34.57 3.86
504 505 0.392998 ATTGCTCGGCTAACCACTGG 60.393 55.000 0.00 0.00 34.57 4.00
505 506 0.729116 CATTGCTCGGCTAACCACTG 59.271 55.000 0.00 0.00 34.57 3.66
506 507 0.392998 CCATTGCTCGGCTAACCACT 60.393 55.000 0.00 0.00 34.57 4.00
508 509 1.748879 GCCATTGCTCGGCTAACCA 60.749 57.895 4.59 0.00 46.56 3.67
509 510 3.111038 GCCATTGCTCGGCTAACC 58.889 61.111 4.59 0.00 46.56 2.85
514 515 3.869272 CTCACGCCATTGCTCGGC 61.869 66.667 1.95 1.95 46.62 5.54
515 516 1.970917 GAACTCACGCCATTGCTCGG 61.971 60.000 0.00 0.00 34.43 4.63
516 517 1.421485 GAACTCACGCCATTGCTCG 59.579 57.895 0.00 0.00 34.43 5.03
517 518 1.014044 TCGAACTCACGCCATTGCTC 61.014 55.000 0.00 0.00 34.43 4.26
518 519 0.602638 TTCGAACTCACGCCATTGCT 60.603 50.000 0.00 0.00 34.43 3.91
519 520 0.447801 ATTCGAACTCACGCCATTGC 59.552 50.000 0.00 0.00 0.00 3.56
520 521 1.062587 GGATTCGAACTCACGCCATTG 59.937 52.381 0.00 0.00 0.00 2.82
521 522 1.066143 AGGATTCGAACTCACGCCATT 60.066 47.619 0.00 0.00 0.00 3.16
522 523 0.537188 AGGATTCGAACTCACGCCAT 59.463 50.000 0.00 0.00 0.00 4.40
524 525 0.108804 TGAGGATTCGAACTCACGCC 60.109 55.000 12.94 3.39 38.71 5.68
525 526 1.272781 CTGAGGATTCGAACTCACGC 58.727 55.000 12.94 1.72 38.71 5.34
526 527 1.272781 GCTGAGGATTCGAACTCACG 58.727 55.000 12.94 10.72 38.71 4.35
527 528 1.272781 CGCTGAGGATTCGAACTCAC 58.727 55.000 12.94 9.85 38.71 3.51
529 530 1.135373 TCACGCTGAGGATTCGAACTC 60.135 52.381 0.00 4.25 0.00 3.01
531 532 0.992802 GTCACGCTGAGGATTCGAAC 59.007 55.000 0.00 0.00 0.00 3.95
532 533 0.601057 TGTCACGCTGAGGATTCGAA 59.399 50.000 0.00 0.00 0.00 3.71
533 534 0.171231 CTGTCACGCTGAGGATTCGA 59.829 55.000 0.00 0.00 0.00 3.71
534 535 1.416813 GCTGTCACGCTGAGGATTCG 61.417 60.000 0.00 0.00 0.00 3.34
535 536 0.108424 AGCTGTCACGCTGAGGATTC 60.108 55.000 0.00 0.00 39.16 2.52
536 537 0.322975 AAGCTGTCACGCTGAGGATT 59.677 50.000 0.00 0.00 40.79 3.01
538 539 0.601046 CAAAGCTGTCACGCTGAGGA 60.601 55.000 0.00 0.00 40.79 3.71
540 541 0.940126 AACAAAGCTGTCACGCTGAG 59.060 50.000 0.00 0.00 40.79 3.35
542 543 2.193306 AAAACAAAGCTGTCACGCTG 57.807 45.000 0.00 0.00 40.79 5.18
543 544 2.290641 CCTAAAACAAAGCTGTCACGCT 59.709 45.455 0.00 0.00 43.31 5.07
544 545 2.289547 TCCTAAAACAAAGCTGTCACGC 59.710 45.455 0.00 0.00 33.45 5.34
545 546 4.749245 ATCCTAAAACAAAGCTGTCACG 57.251 40.909 0.00 0.00 33.45 4.35
546 547 7.042725 GGAAAAATCCTAAAACAAAGCTGTCAC 60.043 37.037 0.00 0.00 33.45 3.67
547 548 6.983890 GGAAAAATCCTAAAACAAAGCTGTCA 59.016 34.615 0.00 0.00 33.45 3.58
548 549 6.143919 CGGAAAAATCCTAAAACAAAGCTGTC 59.856 38.462 0.00 0.00 33.45 3.51
549 550 5.983118 CGGAAAAATCCTAAAACAAAGCTGT 59.017 36.000 0.00 0.00 37.39 4.40
550 551 5.107491 GCGGAAAAATCCTAAAACAAAGCTG 60.107 40.000 0.00 0.00 0.00 4.24
552 553 4.988540 AGCGGAAAAATCCTAAAACAAAGC 59.011 37.500 0.00 0.00 0.00 3.51
553 554 5.405269 CCAGCGGAAAAATCCTAAAACAAAG 59.595 40.000 0.00 0.00 0.00 2.77
554 555 5.293560 CCAGCGGAAAAATCCTAAAACAAA 58.706 37.500 0.00 0.00 0.00 2.83
556 557 3.305744 GCCAGCGGAAAAATCCTAAAACA 60.306 43.478 0.00 0.00 0.00 2.83
557 558 3.250744 GCCAGCGGAAAAATCCTAAAAC 58.749 45.455 0.00 0.00 0.00 2.43
558 559 2.094957 CGCCAGCGGAAAAATCCTAAAA 60.095 45.455 3.61 0.00 35.56 1.52
559 560 1.470890 CGCCAGCGGAAAAATCCTAAA 59.529 47.619 3.61 0.00 35.56 1.85
561 562 0.035820 ACGCCAGCGGAAAAATCCTA 60.036 50.000 17.33 0.00 44.69 2.94
562 563 0.893727 AACGCCAGCGGAAAAATCCT 60.894 50.000 17.33 0.00 44.69 3.24
563 564 0.732538 CAACGCCAGCGGAAAAATCC 60.733 55.000 17.33 0.00 44.69 3.01
564 565 0.039527 ACAACGCCAGCGGAAAAATC 60.040 50.000 17.33 0.00 44.69 2.17
565 566 0.318614 CACAACGCCAGCGGAAAAAT 60.319 50.000 17.33 0.00 44.69 1.82
566 567 1.064946 CACAACGCCAGCGGAAAAA 59.935 52.632 17.33 0.00 44.69 1.94
567 568 2.115911 ACACAACGCCAGCGGAAAA 61.116 52.632 17.33 0.00 44.69 2.29
568 569 2.515057 ACACAACGCCAGCGGAAA 60.515 55.556 17.33 0.00 44.69 3.13
571 572 3.521308 GAACACACAACGCCAGCGG 62.521 63.158 17.33 1.69 44.69 5.52
572 573 2.052237 GAACACACAACGCCAGCG 60.052 61.111 11.05 11.05 46.03 5.18
573 574 2.052237 CGAACACACAACGCCAGC 60.052 61.111 0.00 0.00 0.00 4.85
575 576 2.465299 CCACGAACACACAACGCCA 61.465 57.895 0.00 0.00 0.00 5.69
577 578 2.326550 CCCACGAACACACAACGC 59.673 61.111 0.00 0.00 0.00 4.84
578 579 2.177580 AGCCCACGAACACACAACG 61.178 57.895 0.00 0.00 0.00 4.10
579 580 1.355210 CAGCCCACGAACACACAAC 59.645 57.895 0.00 0.00 0.00 3.32
581 582 2.203139 CCAGCCCACGAACACACA 60.203 61.111 0.00 0.00 0.00 3.72
582 583 2.203153 ACCAGCCCACGAACACAC 60.203 61.111 0.00 0.00 0.00 3.82
583 584 1.116536 TAGACCAGCCCACGAACACA 61.117 55.000 0.00 0.00 0.00 3.72
584 585 0.669625 GTAGACCAGCCCACGAACAC 60.670 60.000 0.00 0.00 0.00 3.32
586 587 1.079336 GGTAGACCAGCCCACGAAC 60.079 63.158 0.00 0.00 35.64 3.95
587 588 1.534476 TGGTAGACCAGCCCACGAA 60.534 57.895 0.00 0.00 42.01 3.85
588 589 2.118732 TGGTAGACCAGCCCACGA 59.881 61.111 0.00 0.00 42.01 4.35
597 598 4.840005 GCAGCGCCCTGGTAGACC 62.840 72.222 2.29 0.00 39.54 3.85
599 600 3.774528 CTGCAGCGCCCTGGTAGA 61.775 66.667 2.29 0.00 39.54 2.59
613 614 3.730761 CCAACTGGTGCTCGCTGC 61.731 66.667 0.00 0.00 43.25 5.25
614 615 3.052082 CCCAACTGGTGCTCGCTG 61.052 66.667 0.00 0.00 0.00 5.18
624 625 1.005394 ACGCCGTCTAACCCAACTG 60.005 57.895 0.00 0.00 0.00 3.16
625 626 1.005394 CACGCCGTCTAACCCAACT 60.005 57.895 0.00 0.00 0.00 3.16
626 627 2.030958 CCACGCCGTCTAACCCAAC 61.031 63.158 0.00 0.00 0.00 3.77
627 628 1.756408 TTCCACGCCGTCTAACCCAA 61.756 55.000 0.00 0.00 0.00 4.12
629 630 0.461135 TATTCCACGCCGTCTAACCC 59.539 55.000 0.00 0.00 0.00 4.11
630 631 1.537562 CCTATTCCACGCCGTCTAACC 60.538 57.143 0.00 0.00 0.00 2.85
632 633 1.766494 TCCTATTCCACGCCGTCTAA 58.234 50.000 0.00 0.00 0.00 2.10
633 634 1.679680 CTTCCTATTCCACGCCGTCTA 59.320 52.381 0.00 0.00 0.00 2.59
634 635 0.460311 CTTCCTATTCCACGCCGTCT 59.540 55.000 0.00 0.00 0.00 4.18
635 636 0.175073 ACTTCCTATTCCACGCCGTC 59.825 55.000 0.00 0.00 0.00 4.79
636 637 0.175073 GACTTCCTATTCCACGCCGT 59.825 55.000 0.00 0.00 0.00 5.68
638 639 0.179054 GGGACTTCCTATTCCACGCC 60.179 60.000 0.00 0.00 33.01 5.68
639 640 0.179054 GGGGACTTCCTATTCCACGC 60.179 60.000 0.00 0.00 33.01 5.34
640 641 1.497161 AGGGGACTTCCTATTCCACG 58.503 55.000 0.00 0.00 40.63 4.94
641 642 3.778629 TGTTAGGGGACTTCCTATTCCAC 59.221 47.826 0.00 0.00 43.67 4.02
642 643 4.037927 CTGTTAGGGGACTTCCTATTCCA 58.962 47.826 0.00 0.00 43.67 3.53
643 644 4.038633 ACTGTTAGGGGACTTCCTATTCC 58.961 47.826 0.00 0.00 43.67 3.01
644 645 5.189145 TGAACTGTTAGGGGACTTCCTATTC 59.811 44.000 0.00 0.00 43.67 1.75
646 647 4.470304 GTGAACTGTTAGGGGACTTCCTAT 59.530 45.833 0.00 0.00 43.67 2.57
648 649 2.638363 GTGAACTGTTAGGGGACTTCCT 59.362 50.000 0.00 0.00 43.67 3.36
649 650 2.638363 AGTGAACTGTTAGGGGACTTCC 59.362 50.000 0.00 0.00 43.67 3.46
650 651 5.479124 TTAGTGAACTGTTAGGGGACTTC 57.521 43.478 0.00 0.00 43.67 3.01
651 652 5.368816 AGTTTAGTGAACTGTTAGGGGACTT 59.631 40.000 0.00 0.00 46.66 3.01
652 653 4.906060 AGTTTAGTGAACTGTTAGGGGACT 59.094 41.667 0.00 0.00 46.66 3.85
653 654 5.224821 AGTTTAGTGAACTGTTAGGGGAC 57.775 43.478 0.00 0.00 46.66 4.46
664 665 7.246674 TCATGAAGTTGACAGTTTAGTGAAC 57.753 36.000 0.00 0.00 36.12 3.18
672 673 9.683069 GAAACAATAATCATGAAGTTGACAGTT 57.317 29.630 18.95 7.37 0.00 3.16
673 674 8.849168 TGAAACAATAATCATGAAGTTGACAGT 58.151 29.630 18.95 2.58 0.00 3.55
674 675 9.850628 ATGAAACAATAATCATGAAGTTGACAG 57.149 29.630 18.95 2.07 35.06 3.51
706 2735 7.946776 CCTATGAATGAAGGAACAATAATCCCT 59.053 37.037 0.00 0.00 37.71 4.20
707 2736 7.725844 ACCTATGAATGAAGGAACAATAATCCC 59.274 37.037 0.00 0.00 37.71 3.85
708 2737 8.697507 ACCTATGAATGAAGGAACAATAATCC 57.302 34.615 0.00 0.00 36.66 3.01
738 2774 2.719739 CAAGACAAGAGGCCATCACAT 58.280 47.619 5.01 0.00 0.00 3.21
740 2776 0.807496 GCAAGACAAGAGGCCATCAC 59.193 55.000 5.01 0.00 0.00 3.06
741 2777 0.401356 TGCAAGACAAGAGGCCATCA 59.599 50.000 5.01 0.00 0.00 3.07
742 2778 0.807496 GTGCAAGACAAGAGGCCATC 59.193 55.000 5.01 0.00 0.00 3.51
743 2779 0.610232 GGTGCAAGACAAGAGGCCAT 60.610 55.000 5.01 0.00 0.00 4.40
745 2781 1.073897 AGGTGCAAGACAAGAGGCC 59.926 57.895 0.00 0.00 0.00 5.19
746 2782 0.250467 TCAGGTGCAAGACAAGAGGC 60.250 55.000 0.00 0.00 0.00 4.70
747 2783 2.486472 ATCAGGTGCAAGACAAGAGG 57.514 50.000 0.00 0.00 0.00 3.69
748 2784 5.645067 TGATAAATCAGGTGCAAGACAAGAG 59.355 40.000 0.00 0.00 32.11 2.85
749 2785 5.559770 TGATAAATCAGGTGCAAGACAAGA 58.440 37.500 0.00 0.00 32.11 3.02
750 2786 5.885230 TGATAAATCAGGTGCAAGACAAG 57.115 39.130 0.00 0.00 32.11 3.16
780 2817 5.426689 TGATTGCCTATCAGTCTTGAAGT 57.573 39.130 0.00 0.00 38.35 3.01
804 2841 4.991153 ATTCAGAGACTGTTCATCGCTA 57.009 40.909 0.00 0.00 32.61 4.26
880 3571 1.271217 TGCATGCAGAGAAGCTCAACT 60.271 47.619 18.46 0.00 32.06 3.16
902 3594 0.101399 ATCACGAGCGATCGAAGCTT 59.899 50.000 31.66 3.13 46.13 3.74
909 3601 2.593134 GGCTGCATCACGAGCGATC 61.593 63.158 0.50 0.00 35.95 3.69
939 3631 1.338674 CCATGTAGCCCGTGAAGTGAA 60.339 52.381 0.00 0.00 31.20 3.18
1002 3697 0.895559 CAGGGTTTGGGTCTGAAGCC 60.896 60.000 0.00 0.00 43.74 4.35
1004 3699 2.230660 GTTCAGGGTTTGGGTCTGAAG 58.769 52.381 5.39 0.00 44.82 3.02
1005 3700 1.133606 GGTTCAGGGTTTGGGTCTGAA 60.134 52.381 0.00 0.00 42.88 3.02
1006 3701 0.476771 GGTTCAGGGTTTGGGTCTGA 59.523 55.000 0.00 0.00 35.95 3.27
1013 3713 1.534729 GCTGTAGGGTTCAGGGTTTG 58.465 55.000 0.00 0.00 33.98 2.93
1081 3781 1.630126 TTGAGGAGGAGAGCCATGGC 61.630 60.000 30.12 30.12 42.33 4.40
1107 3807 3.311110 GTGGTGGAGAGGTGGCGA 61.311 66.667 0.00 0.00 0.00 5.54
1109 3809 1.003233 GAAGTGGTGGAGAGGTGGC 60.003 63.158 0.00 0.00 0.00 5.01
1332 4032 2.342648 GTGGAAGAGAACGCGGGT 59.657 61.111 12.47 0.00 0.00 5.28
1806 4506 0.173481 TGTAGAGCACGACATCAGGC 59.827 55.000 0.00 0.00 0.00 4.85
1877 4577 1.364626 CTGCATCTCAGCGAACACCC 61.365 60.000 0.00 0.00 35.78 4.61
2019 4719 1.930371 GCATTGAAGGTTGCCGTGTTC 60.930 52.381 0.00 0.00 32.66 3.18
2028 4728 1.135527 CGCATGATGGCATTGAAGGTT 59.864 47.619 0.00 0.00 30.68 3.50
2037 4737 0.816421 CATGAGACCGCATGATGGCA 60.816 55.000 7.80 0.00 46.64 4.92
2050 4750 2.989639 CCCGGCCTTGACATGAGA 59.010 61.111 0.00 0.00 0.00 3.27
2154 4854 1.606313 CCCCTTCCCGCAATGTGTT 60.606 57.895 0.00 0.00 0.00 3.32
2307 5007 0.249489 GCTCCTGCATCCGTTCGTAT 60.249 55.000 0.00 0.00 39.41 3.06
2334 5034 2.851263 AAGTCACCACATTCGGCTTA 57.149 45.000 0.00 0.00 0.00 3.09
2562 5262 3.438087 GCATCAGCACCATATCATACACC 59.562 47.826 0.00 0.00 41.58 4.16
2700 5400 8.062065 TGGATTGTATGGGAAGAAATGTTTAC 57.938 34.615 0.00 0.00 0.00 2.01
2734 5434 3.681897 CGTGCTGATAGCTGAAACTTCTT 59.318 43.478 0.00 0.00 42.97 2.52
2735 5435 3.257393 CGTGCTGATAGCTGAAACTTCT 58.743 45.455 0.00 0.00 42.97 2.85
2755 5455 6.472163 GCTGAAAATATGTTGTTCCATTACCG 59.528 38.462 0.00 0.00 0.00 4.02
2767 5467 5.887598 TGCACTGGATAGCTGAAAATATGTT 59.112 36.000 0.00 0.00 0.00 2.71
2770 5470 5.933617 TCTGCACTGGATAGCTGAAAATAT 58.066 37.500 0.00 0.00 36.08 1.28
2773 5473 3.701205 TCTGCACTGGATAGCTGAAAA 57.299 42.857 0.00 0.00 36.08 2.29
2775 5475 3.244526 TGTTTCTGCACTGGATAGCTGAA 60.245 43.478 0.00 0.00 43.71 3.02
2781 5481 5.227569 TCTCTTTGTTTCTGCACTGGATA 57.772 39.130 0.00 0.00 0.00 2.59
2806 5506 2.137177 TTAGGTGGCAGCAGAACCCC 62.137 60.000 20.04 0.00 34.29 4.95
2807 5507 0.034089 ATTAGGTGGCAGCAGAACCC 60.034 55.000 20.04 0.00 34.29 4.11
3058 5760 7.490657 ACTAGGATACAACACACCAGATTAA 57.509 36.000 0.00 0.00 41.41 1.40
3119 5825 4.385748 GGAATTCGAAACACCAATTTCTGC 59.614 41.667 0.00 0.00 36.59 4.26
3120 5826 5.772521 AGGAATTCGAAACACCAATTTCTG 58.227 37.500 0.00 0.00 36.59 3.02
3168 5874 3.859961 GTCATCGTCTGATTGAACACGAT 59.140 43.478 0.10 0.10 40.32 3.73
3173 5879 3.181526 GCAGTGTCATCGTCTGATTGAAC 60.182 47.826 0.00 0.00 35.97 3.18
3238 5944 4.926238 CACTTCACTAACAGTCTAGCAAGG 59.074 45.833 0.00 0.00 0.00 3.61
3281 5987 8.449397 ACTACAACAGATAAGAAGTACAGTACG 58.551 37.037 5.02 0.00 0.00 3.67
3282 5988 9.557338 CACTACAACAGATAAGAAGTACAGTAC 57.443 37.037 2.05 2.05 0.00 2.73
3284 5990 8.179509 ACACTACAACAGATAAGAAGTACAGT 57.820 34.615 0.00 0.00 0.00 3.55
3285 5991 8.516234 AGACACTACAACAGATAAGAAGTACAG 58.484 37.037 0.00 0.00 0.00 2.74
3315 6021 7.775120 TCAAATCAAGGAAGCATTATTTCTCC 58.225 34.615 0.00 0.00 0.00 3.71
3356 6064 2.158449 GTGTTGAGAATTCAGACCTGCG 59.842 50.000 8.44 0.00 34.15 5.18
3423 6145 2.291043 GGAGGAAGAACCCGGCTGA 61.291 63.158 0.00 0.00 40.05 4.26
3424 6146 1.842381 AAGGAGGAAGAACCCGGCTG 61.842 60.000 0.00 0.00 40.05 4.85
3425 6147 1.539124 AAGGAGGAAGAACCCGGCT 60.539 57.895 0.00 0.00 40.05 5.52
3426 6148 1.377333 CAAGGAGGAAGAACCCGGC 60.377 63.158 0.00 0.00 40.05 6.13
3428 6150 0.321653 CCACAAGGAGGAAGAACCCG 60.322 60.000 0.00 0.00 40.05 5.28
3444 6294 2.137523 CAGCTTTCCAAAACATGCCAC 58.862 47.619 0.00 0.00 0.00 5.01
3482 6332 2.613691 GTTGGCTGGATGATTTGCTTG 58.386 47.619 0.00 0.00 0.00 4.01
3497 6347 2.614829 ACCATATCAGGTACGTTGGC 57.385 50.000 0.00 0.00 40.98 4.52
3501 6351 3.912248 AGGAGAACCATATCAGGTACGT 58.088 45.455 0.00 0.00 42.25 3.57
3512 6362 2.716424 TGACCCAAGAAAGGAGAACCAT 59.284 45.455 0.00 0.00 38.94 3.55
3515 6365 3.753797 GACATGACCCAAGAAAGGAGAAC 59.246 47.826 0.00 0.00 0.00 3.01
3520 6370 2.440409 CCAGACATGACCCAAGAAAGG 58.560 52.381 0.00 0.00 0.00 3.11
3532 6382 3.340814 AGTACAGCTTTCCCAGACATG 57.659 47.619 0.00 0.00 0.00 3.21
3554 6415 5.122396 ACTGATTTGCTTCACCGAATTAGTC 59.878 40.000 0.00 0.00 32.86 2.59
3591 6452 2.725637 TGTCGCATGGTAGTACCTACA 58.274 47.619 20.07 12.69 39.58 2.74
3596 6457 4.390603 TGTGAAAATGTCGCATGGTAGTAC 59.609 41.667 0.00 0.00 41.89 2.73
3597 6458 4.570930 TGTGAAAATGTCGCATGGTAGTA 58.429 39.130 0.00 0.00 41.89 1.82
3598 6459 3.407698 TGTGAAAATGTCGCATGGTAGT 58.592 40.909 0.00 0.00 41.89 2.73
3599 6460 3.181507 CCTGTGAAAATGTCGCATGGTAG 60.182 47.826 0.00 0.00 45.59 3.18
3600 6461 2.746904 CCTGTGAAAATGTCGCATGGTA 59.253 45.455 0.00 0.00 45.59 3.25
3601 6462 1.541147 CCTGTGAAAATGTCGCATGGT 59.459 47.619 0.00 0.00 45.59 3.55
3602 6463 1.811965 TCCTGTGAAAATGTCGCATGG 59.188 47.619 0.00 0.00 45.59 3.66
3603 6464 2.485426 AGTCCTGTGAAAATGTCGCATG 59.515 45.455 0.00 0.00 45.59 4.06
3604 6465 2.783135 AGTCCTGTGAAAATGTCGCAT 58.217 42.857 0.00 0.00 45.59 4.73
3605 6466 2.254546 AGTCCTGTGAAAATGTCGCA 57.745 45.000 0.00 0.00 44.57 5.10
3606 6467 3.626028 AAAGTCCTGTGAAAATGTCGC 57.374 42.857 0.00 0.00 37.26 5.19
3607 6468 4.154195 CCCTAAAGTCCTGTGAAAATGTCG 59.846 45.833 0.00 0.00 0.00 4.35
3615 6487 4.136341 TCCTAACCCTAAAGTCCTGTGA 57.864 45.455 0.00 0.00 0.00 3.58
3622 6494 5.450818 TTGATGCATCCTAACCCTAAAGT 57.549 39.130 23.67 0.00 0.00 2.66
3628 6500 3.825328 AGTGATTGATGCATCCTAACCC 58.175 45.455 23.67 7.62 0.00 4.11
3647 6519 5.003804 CAGGCACTAACAACCAAGATAAGT 58.996 41.667 0.00 0.00 36.02 2.24
3650 6522 4.901197 TCAGGCACTAACAACCAAGATA 57.099 40.909 0.00 0.00 36.02 1.98
3655 6527 3.719268 ATCATCAGGCACTAACAACCA 57.281 42.857 0.00 0.00 36.02 3.67
3667 6539 1.019673 CCAAGCCGTGAATCATCAGG 58.980 55.000 0.00 0.00 40.35 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.