Multiple sequence alignment - TraesCS5A01G336700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G336700 chr5A 100.000 4395 0 0 1606 6000 545560910 545565304 0.000000e+00 8117.0
1 TraesCS5A01G336700 chr5A 100.000 1311 0 0 1 1311 545559305 545560615 0.000000e+00 2422.0
2 TraesCS5A01G336700 chr5D 92.468 1872 76 36 3794 5642 429712518 429714347 0.000000e+00 2615.0
3 TraesCS5A01G336700 chr5D 94.494 1017 36 10 2711 3715 429711506 429712514 0.000000e+00 1550.0
4 TraesCS5A01G336700 chr5D 87.805 1025 80 25 303 1303 429709118 429710121 0.000000e+00 1158.0
5 TraesCS5A01G336700 chr5D 95.745 611 24 2 2104 2713 429710784 429711393 0.000000e+00 983.0
6 TraesCS5A01G336700 chr5D 93.883 376 14 5 5634 6000 429714389 429714764 5.250000e-155 558.0
7 TraesCS5A01G336700 chr5D 86.837 509 43 17 1607 2104 429710122 429710617 1.140000e-151 547.0
8 TraesCS5A01G336700 chr5D 90.879 307 26 2 1 306 429580110 429580415 1.560000e-110 411.0
9 TraesCS5A01G336700 chr5B 95.603 1319 45 8 3868 5173 518958184 518959502 0.000000e+00 2102.0
10 TraesCS5A01G336700 chr5B 93.783 933 44 7 2712 3639 518957001 518957924 0.000000e+00 1389.0
11 TraesCS5A01G336700 chr5B 87.647 1020 74 27 303 1295 518954769 518955763 0.000000e+00 1138.0
12 TraesCS5A01G336700 chr5B 95.603 705 21 3 2018 2713 518956184 518956887 0.000000e+00 1122.0
13 TraesCS5A01G336700 chr5B 88.033 844 76 21 5174 6000 518959558 518960393 0.000000e+00 976.0
14 TraesCS5A01G336700 chr5B 93.862 391 21 2 1634 2023 518955768 518956156 2.410000e-163 586.0
15 TraesCS5A01G336700 chr5B 91.176 306 25 2 2 306 518826514 518826818 1.200000e-111 414.0
16 TraesCS5A01G336700 chr5B 93.213 221 14 1 3686 3905 518957925 518958145 2.090000e-84 324.0
17 TraesCS5A01G336700 chr6A 91.139 79 6 1 3622 3700 123539086 123539009 8.220000e-19 106.0
18 TraesCS5A01G336700 chr7A 85.294 102 12 3 9 108 568703228 568703328 1.060000e-17 102.0
19 TraesCS5A01G336700 chr2D 89.062 64 4 3 8 68 588167146 588167083 6.450000e-10 76.8
20 TraesCS5A01G336700 chr4B 81.928 83 14 1 27 108 23408852 23408770 1.080000e-07 69.4
21 TraesCS5A01G336700 chr1B 91.667 48 4 0 27 74 487945808 487945761 3.880000e-07 67.6
22 TraesCS5A01G336700 chr3D 91.667 48 3 1 3646 3693 380481324 380481370 1.400000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G336700 chr5A 545559305 545565304 5999 False 5269.500000 8117 100.000000 1 6000 2 chr5A.!!$F1 5999
1 TraesCS5A01G336700 chr5D 429709118 429714764 5646 False 1235.166667 2615 91.872000 303 6000 6 chr5D.!!$F2 5697
2 TraesCS5A01G336700 chr5B 518954769 518960393 5624 False 1091.000000 2102 92.534857 303 6000 7 chr5B.!!$F2 5697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 848 0.033504 CGGCCCAACGTGAGCTATAT 59.966 55.000 0.00 0.0 0.00 0.86 F
1231 1282 1.195115 TTTGAGATCCCGACCCTGAG 58.805 55.000 0.00 0.0 0.00 3.35 F
2856 3355 1.074775 GGACTGTGGTGATTGGGCA 59.925 57.895 0.00 0.0 0.00 5.36 F
2916 3423 0.035725 CTGCTTGAGTGCCTGATCCA 60.036 55.000 0.00 0.0 0.00 3.41 F
3716 4225 0.179076 CCGTGGACATGCAGATGCTA 60.179 55.000 6.35 0.0 42.66 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 2717 1.003223 GTTGTCAACCGACCCGAAAAG 60.003 52.381 4.21 0.0 41.85 2.27 R
2916 3423 0.111639 GAGCCGAGGAGGGAGACTAT 59.888 60.000 0.00 0.0 41.48 2.12 R
3716 4225 2.030027 TCCTAGGGATGCAATCGGAT 57.970 50.000 9.46 0.0 46.86 4.18 R
4768 5361 2.363306 TGGGGCATTCCATATGACAC 57.637 50.000 3.65 0.0 37.22 3.67 R
5514 6185 0.467290 TCCCCTCCAGTTTGCACAAC 60.467 55.000 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.849151 AGGGTATTACAAAGAAACCAGAAGT 58.151 36.000 0.00 0.00 31.58 3.01
25 26 7.981142 AGGGTATTACAAAGAAACCAGAAGTA 58.019 34.615 0.00 0.00 31.58 2.24
26 27 8.442374 AGGGTATTACAAAGAAACCAGAAGTAA 58.558 33.333 0.00 0.00 31.58 2.24
27 28 9.070179 GGGTATTACAAAGAAACCAGAAGTAAA 57.930 33.333 0.00 0.00 31.58 2.01
51 52 7.787725 AAAATTACAATCAGATCCGTAGACC 57.212 36.000 0.00 0.00 0.00 3.85
52 53 6.479972 AATTACAATCAGATCCGTAGACCA 57.520 37.500 0.00 0.00 0.00 4.02
53 54 3.802948 ACAATCAGATCCGTAGACCAC 57.197 47.619 0.00 0.00 0.00 4.16
54 55 2.431057 ACAATCAGATCCGTAGACCACC 59.569 50.000 0.00 0.00 0.00 4.61
55 56 2.695666 CAATCAGATCCGTAGACCACCT 59.304 50.000 0.00 0.00 0.00 4.00
56 57 3.878237 ATCAGATCCGTAGACCACCTA 57.122 47.619 0.00 0.00 0.00 3.08
57 58 3.210232 TCAGATCCGTAGACCACCTAG 57.790 52.381 0.00 0.00 0.00 3.02
58 59 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
59 60 1.214673 AGATCCGTAGACCACCTAGCA 59.785 52.381 0.00 0.00 0.00 3.49
60 61 1.337387 GATCCGTAGACCACCTAGCAC 59.663 57.143 0.00 0.00 0.00 4.40
61 62 0.682209 TCCGTAGACCACCTAGCACC 60.682 60.000 0.00 0.00 0.00 5.01
62 63 1.432251 CGTAGACCACCTAGCACCG 59.568 63.158 0.00 0.00 0.00 4.94
63 64 1.028330 CGTAGACCACCTAGCACCGA 61.028 60.000 0.00 0.00 0.00 4.69
64 65 0.455005 GTAGACCACCTAGCACCGAC 59.545 60.000 0.00 0.00 0.00 4.79
65 66 0.330604 TAGACCACCTAGCACCGACT 59.669 55.000 0.00 0.00 0.00 4.18
66 67 0.330604 AGACCACCTAGCACCGACTA 59.669 55.000 0.00 0.00 0.00 2.59
67 68 0.455005 GACCACCTAGCACCGACTAC 59.545 60.000 0.00 0.00 0.00 2.73
68 69 0.039326 ACCACCTAGCACCGACTACT 59.961 55.000 0.00 0.00 0.00 2.57
69 70 1.283029 ACCACCTAGCACCGACTACTA 59.717 52.381 0.00 0.00 0.00 1.82
70 71 1.948145 CCACCTAGCACCGACTACTAG 59.052 57.143 0.00 0.00 34.44 2.57
71 72 2.641305 CACCTAGCACCGACTACTAGT 58.359 52.381 0.00 0.00 33.09 2.57
72 73 3.432749 CCACCTAGCACCGACTACTAGTA 60.433 52.174 1.89 1.89 33.09 1.82
73 74 3.559242 CACCTAGCACCGACTACTAGTAC 59.441 52.174 0.00 0.00 33.09 2.73
74 75 3.137533 CCTAGCACCGACTACTAGTACC 58.862 54.545 0.00 0.00 33.09 3.34
75 76 1.661341 AGCACCGACTACTAGTACCG 58.339 55.000 0.00 5.81 0.00 4.02
76 77 0.659957 GCACCGACTACTAGTACCGG 59.340 60.000 25.72 25.72 45.09 5.28
77 78 1.743772 GCACCGACTACTAGTACCGGA 60.744 57.143 30.53 4.41 42.49 5.14
78 79 2.208431 CACCGACTACTAGTACCGGAG 58.792 57.143 30.53 23.53 42.49 4.63
79 80 1.224965 CCGACTACTAGTACCGGAGC 58.775 60.000 24.28 0.00 42.49 4.70
80 81 1.473965 CCGACTACTAGTACCGGAGCA 60.474 57.143 24.28 0.00 42.49 4.26
81 82 2.283298 CGACTACTAGTACCGGAGCAA 58.717 52.381 9.46 0.00 0.00 3.91
82 83 2.287373 CGACTACTAGTACCGGAGCAAG 59.713 54.545 9.46 2.41 0.00 4.01
83 84 2.022934 ACTACTAGTACCGGAGCAAGC 58.977 52.381 9.46 0.00 0.00 4.01
84 85 2.299521 CTACTAGTACCGGAGCAAGCT 58.700 52.381 9.46 0.00 0.00 3.74
85 86 0.818296 ACTAGTACCGGAGCAAGCTG 59.182 55.000 9.46 0.00 0.00 4.24
86 87 1.103803 CTAGTACCGGAGCAAGCTGA 58.896 55.000 9.46 0.00 0.00 4.26
87 88 1.066303 CTAGTACCGGAGCAAGCTGAG 59.934 57.143 9.46 0.00 0.00 3.35
88 89 1.153549 GTACCGGAGCAAGCTGAGG 60.154 63.158 9.46 5.07 0.00 3.86
89 90 3.019003 TACCGGAGCAAGCTGAGGC 62.019 63.158 9.46 0.00 39.06 4.70
111 112 3.564027 CGCCGTCATCGCCCTTTC 61.564 66.667 0.00 0.00 35.54 2.62
112 113 3.564027 GCCGTCATCGCCCTTTCG 61.564 66.667 0.00 0.00 35.54 3.46
113 114 2.125673 CCGTCATCGCCCTTTCGT 60.126 61.111 0.00 0.00 35.54 3.85
114 115 1.740296 CCGTCATCGCCCTTTCGTT 60.740 57.895 0.00 0.00 35.54 3.85
115 116 1.419922 CGTCATCGCCCTTTCGTTG 59.580 57.895 0.00 0.00 0.00 4.10
116 117 1.289109 CGTCATCGCCCTTTCGTTGT 61.289 55.000 0.00 0.00 32.70 3.32
117 118 0.442699 GTCATCGCCCTTTCGTTGTC 59.557 55.000 0.00 0.00 32.70 3.18
118 119 0.034198 TCATCGCCCTTTCGTTGTCA 59.966 50.000 0.00 0.00 32.70 3.58
119 120 0.871722 CATCGCCCTTTCGTTGTCAA 59.128 50.000 0.00 0.00 0.00 3.18
120 121 1.265635 CATCGCCCTTTCGTTGTCAAA 59.734 47.619 0.00 0.00 0.00 2.69
121 122 1.380524 TCGCCCTTTCGTTGTCAAAA 58.619 45.000 0.00 0.00 0.00 2.44
122 123 1.950909 TCGCCCTTTCGTTGTCAAAAT 59.049 42.857 0.00 0.00 0.00 1.82
123 124 2.359531 TCGCCCTTTCGTTGTCAAAATT 59.640 40.909 0.00 0.00 0.00 1.82
124 125 3.120041 CGCCCTTTCGTTGTCAAAATTT 58.880 40.909 0.00 0.00 0.00 1.82
125 126 3.181575 CGCCCTTTCGTTGTCAAAATTTC 59.818 43.478 0.00 0.00 0.00 2.17
126 127 4.116238 GCCCTTTCGTTGTCAAAATTTCA 58.884 39.130 0.00 0.00 0.00 2.69
127 128 4.568760 GCCCTTTCGTTGTCAAAATTTCAA 59.431 37.500 0.00 0.00 0.00 2.69
128 129 5.276820 GCCCTTTCGTTGTCAAAATTTCAAG 60.277 40.000 0.00 0.00 0.00 3.02
129 130 5.276820 CCCTTTCGTTGTCAAAATTTCAAGC 60.277 40.000 0.00 0.00 0.00 4.01
130 131 5.519927 CCTTTCGTTGTCAAAATTTCAAGCT 59.480 36.000 0.00 0.00 0.00 3.74
131 132 6.035975 CCTTTCGTTGTCAAAATTTCAAGCTT 59.964 34.615 0.00 0.00 0.00 3.74
132 133 6.959671 TTCGTTGTCAAAATTTCAAGCTTT 57.040 29.167 0.00 0.00 0.00 3.51
133 134 6.959671 TCGTTGTCAAAATTTCAAGCTTTT 57.040 29.167 0.00 0.00 0.00 2.27
134 135 6.988329 TCGTTGTCAAAATTTCAAGCTTTTC 58.012 32.000 0.00 0.00 0.00 2.29
135 136 6.587990 TCGTTGTCAAAATTTCAAGCTTTTCA 59.412 30.769 0.00 0.00 0.00 2.69
136 137 7.116948 TCGTTGTCAAAATTTCAAGCTTTTCAA 59.883 29.630 0.00 0.00 0.00 2.69
137 138 7.904461 CGTTGTCAAAATTTCAAGCTTTTCAAT 59.096 29.630 0.00 0.00 0.00 2.57
140 141 9.376075 TGTCAAAATTTCAAGCTTTTCAATACA 57.624 25.926 0.00 0.00 0.00 2.29
146 147 8.767478 ATTTCAAGCTTTTCAATACATCAAGG 57.233 30.769 0.00 0.00 0.00 3.61
147 148 6.271488 TCAAGCTTTTCAATACATCAAGGG 57.729 37.500 0.00 0.00 0.00 3.95
148 149 5.774690 TCAAGCTTTTCAATACATCAAGGGT 59.225 36.000 0.00 0.00 0.00 4.34
149 150 6.267471 TCAAGCTTTTCAATACATCAAGGGTT 59.733 34.615 0.00 0.00 0.00 4.11
150 151 6.272822 AGCTTTTCAATACATCAAGGGTTC 57.727 37.500 0.00 0.00 0.00 3.62
151 152 5.774690 AGCTTTTCAATACATCAAGGGTTCA 59.225 36.000 0.00 0.00 0.00 3.18
152 153 5.863935 GCTTTTCAATACATCAAGGGTTCAC 59.136 40.000 0.00 0.00 0.00 3.18
153 154 5.621197 TTTCAATACATCAAGGGTTCACG 57.379 39.130 0.00 0.00 0.00 4.35
154 155 4.545208 TCAATACATCAAGGGTTCACGA 57.455 40.909 0.00 0.00 0.00 4.35
155 156 5.097742 TCAATACATCAAGGGTTCACGAT 57.902 39.130 0.00 0.00 0.00 3.73
156 157 6.228616 TCAATACATCAAGGGTTCACGATA 57.771 37.500 0.00 0.00 0.00 2.92
157 158 6.645306 TCAATACATCAAGGGTTCACGATAA 58.355 36.000 0.00 0.00 0.00 1.75
158 159 7.279615 TCAATACATCAAGGGTTCACGATAAT 58.720 34.615 0.00 0.00 0.00 1.28
159 160 8.425703 TCAATACATCAAGGGTTCACGATAATA 58.574 33.333 0.00 0.00 0.00 0.98
160 161 9.219603 CAATACATCAAGGGTTCACGATAATAT 57.780 33.333 0.00 0.00 0.00 1.28
161 162 9.436957 AATACATCAAGGGTTCACGATAATATC 57.563 33.333 0.00 0.00 0.00 1.63
162 163 6.826668 ACATCAAGGGTTCACGATAATATCA 58.173 36.000 0.87 0.00 0.00 2.15
163 164 7.279615 ACATCAAGGGTTCACGATAATATCAA 58.720 34.615 0.87 0.00 0.00 2.57
164 165 7.773224 ACATCAAGGGTTCACGATAATATCAAA 59.227 33.333 0.87 0.00 0.00 2.69
165 166 8.786898 CATCAAGGGTTCACGATAATATCAAAT 58.213 33.333 0.87 0.00 0.00 2.32
166 167 8.153479 TCAAGGGTTCACGATAATATCAAATG 57.847 34.615 0.87 0.00 0.00 2.32
167 168 7.990314 TCAAGGGTTCACGATAATATCAAATGA 59.010 33.333 0.87 0.00 0.00 2.57
168 169 8.786898 CAAGGGTTCACGATAATATCAAATGAT 58.213 33.333 0.87 1.01 38.51 2.45
169 170 8.553459 AGGGTTCACGATAATATCAAATGATC 57.447 34.615 0.00 0.00 36.05 2.92
170 171 8.156820 AGGGTTCACGATAATATCAAATGATCA 58.843 33.333 0.00 0.00 36.05 2.92
171 172 8.230486 GGGTTCACGATAATATCAAATGATCAC 58.770 37.037 0.00 0.00 36.05 3.06
172 173 8.773645 GGTTCACGATAATATCAAATGATCACA 58.226 33.333 0.00 0.00 36.05 3.58
176 177 9.058424 CACGATAATATCAAATGATCACAATGC 57.942 33.333 0.00 0.00 36.05 3.56
177 178 8.785946 ACGATAATATCAAATGATCACAATGCA 58.214 29.630 0.00 0.00 36.05 3.96
178 179 9.783256 CGATAATATCAAATGATCACAATGCAT 57.217 29.630 0.00 0.00 36.05 3.96
181 182 5.862678 ATCAAATGATCACAATGCATCCA 57.137 34.783 0.00 0.00 0.00 3.41
182 183 5.662674 TCAAATGATCACAATGCATCCAA 57.337 34.783 0.00 0.00 0.00 3.53
183 184 5.656480 TCAAATGATCACAATGCATCCAAG 58.344 37.500 0.00 0.00 0.00 3.61
184 185 4.665833 AATGATCACAATGCATCCAAGG 57.334 40.909 0.00 0.00 0.00 3.61
185 186 3.090210 TGATCACAATGCATCCAAGGT 57.910 42.857 0.00 0.00 0.00 3.50
186 187 3.433343 TGATCACAATGCATCCAAGGTT 58.567 40.909 0.00 0.00 0.00 3.50
187 188 3.444742 TGATCACAATGCATCCAAGGTTC 59.555 43.478 0.00 0.00 0.00 3.62
188 189 2.874014 TCACAATGCATCCAAGGTTCA 58.126 42.857 0.00 0.00 0.00 3.18
189 190 2.557924 TCACAATGCATCCAAGGTTCAC 59.442 45.455 0.00 0.00 0.00 3.18
190 191 2.296752 CACAATGCATCCAAGGTTCACA 59.703 45.455 0.00 0.00 0.00 3.58
191 192 2.297033 ACAATGCATCCAAGGTTCACAC 59.703 45.455 0.00 0.00 0.00 3.82
192 193 1.549203 ATGCATCCAAGGTTCACACC 58.451 50.000 0.00 0.00 44.67 4.16
206 207 6.418585 GGTTCACACCATAGCTAAGTTTAC 57.581 41.667 0.00 0.00 43.61 2.01
207 208 5.935789 GGTTCACACCATAGCTAAGTTTACA 59.064 40.000 0.00 0.00 43.61 2.41
208 209 6.092259 GGTTCACACCATAGCTAAGTTTACAG 59.908 42.308 0.00 0.00 43.61 2.74
209 210 6.599356 TCACACCATAGCTAAGTTTACAGA 57.401 37.500 0.00 0.00 0.00 3.41
210 211 6.999950 TCACACCATAGCTAAGTTTACAGAA 58.000 36.000 0.00 0.00 0.00 3.02
211 212 7.446769 TCACACCATAGCTAAGTTTACAGAAA 58.553 34.615 0.00 0.00 0.00 2.52
212 213 7.934665 TCACACCATAGCTAAGTTTACAGAAAA 59.065 33.333 0.00 0.00 0.00 2.29
213 214 8.730680 CACACCATAGCTAAGTTTACAGAAAAT 58.269 33.333 0.00 0.00 0.00 1.82
214 215 9.297037 ACACCATAGCTAAGTTTACAGAAAATT 57.703 29.630 0.00 0.00 36.79 1.82
215 216 9.559958 CACCATAGCTAAGTTTACAGAAAATTG 57.440 33.333 0.00 0.00 33.99 2.32
216 217 9.515226 ACCATAGCTAAGTTTACAGAAAATTGA 57.485 29.630 0.00 0.00 33.99 2.57
220 221 8.465273 AGCTAAGTTTACAGAAAATTGAACCT 57.535 30.769 0.00 0.00 33.99 3.50
221 222 8.914011 AGCTAAGTTTACAGAAAATTGAACCTT 58.086 29.630 0.00 0.00 33.99 3.50
222 223 9.529325 GCTAAGTTTACAGAAAATTGAACCTTT 57.471 29.630 0.00 0.00 33.99 3.11
229 230 7.713764 ACAGAAAATTGAACCTTTACATTGC 57.286 32.000 0.00 0.00 0.00 3.56
230 231 7.500141 ACAGAAAATTGAACCTTTACATTGCT 58.500 30.769 0.00 0.00 0.00 3.91
231 232 7.439056 ACAGAAAATTGAACCTTTACATTGCTG 59.561 33.333 0.00 0.00 0.00 4.41
232 233 7.652909 CAGAAAATTGAACCTTTACATTGCTGA 59.347 33.333 0.00 0.00 0.00 4.26
233 234 8.203485 AGAAAATTGAACCTTTACATTGCTGAA 58.797 29.630 0.00 0.00 0.00 3.02
234 235 8.729805 AAAATTGAACCTTTACATTGCTGAAA 57.270 26.923 0.00 0.00 0.00 2.69
235 236 7.951530 AATTGAACCTTTACATTGCTGAAAG 57.048 32.000 0.00 0.00 0.00 2.62
236 237 6.707440 TTGAACCTTTACATTGCTGAAAGA 57.293 33.333 7.51 0.00 34.07 2.52
237 238 6.317789 TGAACCTTTACATTGCTGAAAGAG 57.682 37.500 7.51 2.69 34.07 2.85
248 249 1.401199 GCTGAAAGAGCCATCAAGAGC 59.599 52.381 0.00 0.00 42.54 4.09
249 250 2.015587 CTGAAAGAGCCATCAAGAGCC 58.984 52.381 0.00 0.00 34.07 4.70
250 251 1.632409 TGAAAGAGCCATCAAGAGCCT 59.368 47.619 0.00 0.00 0.00 4.58
251 252 2.040813 TGAAAGAGCCATCAAGAGCCTT 59.959 45.455 0.00 0.00 0.00 4.35
252 253 2.125773 AAGAGCCATCAAGAGCCTTG 57.874 50.000 8.22 8.22 0.00 3.61
253 254 1.283347 AGAGCCATCAAGAGCCTTGA 58.717 50.000 16.66 16.66 0.00 3.02
254 255 1.632409 AGAGCCATCAAGAGCCTTGAA 59.368 47.619 17.79 5.91 31.55 2.69
255 256 2.241685 AGAGCCATCAAGAGCCTTGAAT 59.758 45.455 17.79 7.83 31.55 2.57
256 257 2.617774 GAGCCATCAAGAGCCTTGAATC 59.382 50.000 17.79 11.57 31.55 2.52
257 258 2.241685 AGCCATCAAGAGCCTTGAATCT 59.758 45.455 17.79 12.91 31.55 2.40
258 259 2.617774 GCCATCAAGAGCCTTGAATCTC 59.382 50.000 17.79 7.47 31.55 2.75
259 260 3.882444 CCATCAAGAGCCTTGAATCTCA 58.118 45.455 17.79 0.00 31.55 3.27
260 261 4.462133 CCATCAAGAGCCTTGAATCTCAT 58.538 43.478 17.79 2.46 31.55 2.90
261 262 4.515944 CCATCAAGAGCCTTGAATCTCATC 59.484 45.833 17.79 0.00 31.55 2.92
262 263 3.790091 TCAAGAGCCTTGAATCTCATCG 58.210 45.455 13.26 0.00 0.00 3.84
263 264 3.196469 TCAAGAGCCTTGAATCTCATCGT 59.804 43.478 13.26 0.00 0.00 3.73
264 265 3.902881 AGAGCCTTGAATCTCATCGTT 57.097 42.857 0.00 0.00 0.00 3.85
265 266 4.213564 AGAGCCTTGAATCTCATCGTTT 57.786 40.909 0.00 0.00 0.00 3.60
266 267 3.937706 AGAGCCTTGAATCTCATCGTTTG 59.062 43.478 0.00 0.00 0.00 2.93
267 268 3.935203 GAGCCTTGAATCTCATCGTTTGA 59.065 43.478 0.00 0.00 0.00 2.69
268 269 4.521146 AGCCTTGAATCTCATCGTTTGAT 58.479 39.130 0.00 0.00 32.72 2.57
269 270 5.674525 AGCCTTGAATCTCATCGTTTGATA 58.325 37.500 0.00 0.00 32.72 2.15
270 271 6.115446 AGCCTTGAATCTCATCGTTTGATAA 58.885 36.000 0.00 0.00 32.72 1.75
271 272 6.037610 AGCCTTGAATCTCATCGTTTGATAAC 59.962 38.462 0.00 0.00 32.72 1.89
272 273 6.719365 CCTTGAATCTCATCGTTTGATAACC 58.281 40.000 0.00 0.00 32.72 2.85
273 274 6.540189 CCTTGAATCTCATCGTTTGATAACCT 59.460 38.462 0.00 0.00 32.72 3.50
274 275 7.066284 CCTTGAATCTCATCGTTTGATAACCTT 59.934 37.037 0.00 0.00 32.72 3.50
275 276 7.307493 TGAATCTCATCGTTTGATAACCTTG 57.693 36.000 0.00 0.00 32.72 3.61
276 277 6.878923 TGAATCTCATCGTTTGATAACCTTGT 59.121 34.615 0.00 0.00 32.72 3.16
277 278 6.910536 ATCTCATCGTTTGATAACCTTGTC 57.089 37.500 0.00 0.00 32.72 3.18
278 279 6.037786 TCTCATCGTTTGATAACCTTGTCT 57.962 37.500 0.00 0.00 32.72 3.41
279 280 7.165460 TCTCATCGTTTGATAACCTTGTCTA 57.835 36.000 0.00 0.00 32.72 2.59
280 281 7.782049 TCTCATCGTTTGATAACCTTGTCTAT 58.218 34.615 0.00 0.00 32.72 1.98
281 282 7.706607 TCTCATCGTTTGATAACCTTGTCTATG 59.293 37.037 0.00 0.00 32.72 2.23
282 283 7.327975 TCATCGTTTGATAACCTTGTCTATGT 58.672 34.615 0.00 0.00 32.18 2.29
283 284 8.471609 TCATCGTTTGATAACCTTGTCTATGTA 58.528 33.333 0.00 0.00 32.18 2.29
284 285 8.755941 CATCGTTTGATAACCTTGTCTATGTAG 58.244 37.037 0.00 0.00 32.18 2.74
285 286 6.755141 TCGTTTGATAACCTTGTCTATGTAGC 59.245 38.462 0.00 0.00 0.00 3.58
286 287 6.533723 CGTTTGATAACCTTGTCTATGTAGCA 59.466 38.462 0.00 0.00 0.00 3.49
287 288 7.064134 CGTTTGATAACCTTGTCTATGTAGCAA 59.936 37.037 0.00 0.00 0.00 3.91
288 289 8.391106 GTTTGATAACCTTGTCTATGTAGCAAG 58.609 37.037 12.93 12.93 37.28 4.01
289 290 7.182817 TGATAACCTTGTCTATGTAGCAAGT 57.817 36.000 16.01 7.41 36.55 3.16
290 291 7.041721 TGATAACCTTGTCTATGTAGCAAGTG 58.958 38.462 16.01 12.24 36.55 3.16
291 292 4.207891 ACCTTGTCTATGTAGCAAGTGG 57.792 45.455 16.01 9.78 36.55 4.00
292 293 2.939103 CCTTGTCTATGTAGCAAGTGGC 59.061 50.000 16.01 0.00 45.30 5.01
293 294 2.691409 TGTCTATGTAGCAAGTGGCC 57.309 50.000 0.00 0.00 46.50 5.36
294 295 2.187958 TGTCTATGTAGCAAGTGGCCT 58.812 47.619 3.32 0.00 46.50 5.19
295 296 2.168521 TGTCTATGTAGCAAGTGGCCTC 59.831 50.000 3.32 0.00 46.50 4.70
296 297 2.432510 GTCTATGTAGCAAGTGGCCTCT 59.567 50.000 3.32 1.65 46.50 3.69
297 298 2.695666 TCTATGTAGCAAGTGGCCTCTC 59.304 50.000 7.99 0.00 46.50 3.20
298 299 1.577736 ATGTAGCAAGTGGCCTCTCT 58.422 50.000 7.99 4.55 46.50 3.10
299 300 1.352083 TGTAGCAAGTGGCCTCTCTT 58.648 50.000 7.99 5.24 46.50 2.85
300 301 1.699634 TGTAGCAAGTGGCCTCTCTTT 59.300 47.619 7.99 0.00 46.50 2.52
301 302 2.106511 TGTAGCAAGTGGCCTCTCTTTT 59.893 45.455 7.99 2.28 46.50 2.27
318 319 6.873997 TCTCTTTTGTACTTCAACACTCTGA 58.126 36.000 0.00 0.00 35.61 3.27
320 321 6.640518 TCTTTTGTACTTCAACACTCTGACT 58.359 36.000 0.00 0.00 35.61 3.41
330 331 0.902048 CACTCTGACTGGCCTCTCCA 60.902 60.000 3.32 0.00 44.18 3.86
352 353 5.999600 CCATCTGGCATCTACAACAATATGA 59.000 40.000 0.00 0.00 0.00 2.15
354 355 7.013559 CCATCTGGCATCTACAACAATATGAAA 59.986 37.037 0.00 0.00 0.00 2.69
356 357 8.347004 TCTGGCATCTACAACAATATGAAAAA 57.653 30.769 0.00 0.00 0.00 1.94
357 358 8.970020 TCTGGCATCTACAACAATATGAAAAAT 58.030 29.630 0.00 0.00 0.00 1.82
422 423 8.650490 ACATGGATGAAGGAAAATAAACACTTT 58.350 29.630 0.00 0.00 0.00 2.66
423 424 9.143631 CATGGATGAAGGAAAATAAACACTTTC 57.856 33.333 0.00 0.00 0.00 2.62
455 456 6.775088 TGAAGAAATCGTGTATCTCAAATGC 58.225 36.000 0.00 0.00 0.00 3.56
573 581 2.621055 TGTGGTCAGAACAATTTTCCCG 59.379 45.455 0.00 0.00 0.00 5.14
577 585 2.228103 GTCAGAACAATTTTCCCGGGAC 59.772 50.000 26.87 9.34 0.00 4.46
593 601 6.001460 TCCCGGGACACATGAATATTTATTC 58.999 40.000 22.63 3.80 41.81 1.75
637 645 7.498900 TCCATATGATTAGTGTTCAAGCGAAAT 59.501 33.333 3.65 0.00 31.43 2.17
663 671 4.929819 TCTTAAGTTGTTTTTGGGCTCC 57.070 40.909 1.63 0.00 0.00 4.70
664 672 4.282496 TCTTAAGTTGTTTTTGGGCTCCA 58.718 39.130 1.63 0.00 0.00 3.86
665 673 4.340950 TCTTAAGTTGTTTTTGGGCTCCAG 59.659 41.667 1.63 0.00 33.81 3.86
666 674 1.413118 AGTTGTTTTTGGGCTCCAGG 58.587 50.000 0.00 0.00 33.81 4.45
667 675 1.119684 GTTGTTTTTGGGCTCCAGGT 58.880 50.000 0.00 0.00 33.81 4.00
668 676 1.484653 GTTGTTTTTGGGCTCCAGGTT 59.515 47.619 0.00 0.00 33.81 3.50
669 677 1.872773 TGTTTTTGGGCTCCAGGTTT 58.127 45.000 0.00 0.00 33.81 3.27
670 678 1.484240 TGTTTTTGGGCTCCAGGTTTG 59.516 47.619 0.00 0.00 33.81 2.93
671 679 1.127343 TTTTTGGGCTCCAGGTTTGG 58.873 50.000 0.00 0.00 46.49 3.28
686 694 6.824305 CAGGTTTGGAAGTTATGATTGACT 57.176 37.500 0.00 0.00 0.00 3.41
688 696 8.335532 CAGGTTTGGAAGTTATGATTGACTTA 57.664 34.615 0.00 0.00 36.31 2.24
689 697 8.792633 CAGGTTTGGAAGTTATGATTGACTTAA 58.207 33.333 0.00 0.00 36.31 1.85
691 699 8.573035 GGTTTGGAAGTTATGATTGACTTAACA 58.427 33.333 0.00 0.00 39.79 2.41
692 700 9.959749 GTTTGGAAGTTATGATTGACTTAACAA 57.040 29.630 0.00 0.00 39.79 2.83
724 765 6.328148 TGGGGTTCTTTTCTTAAGTACTCAGA 59.672 38.462 1.63 0.00 0.00 3.27
725 766 7.147444 TGGGGTTCTTTTCTTAAGTACTCAGAA 60.147 37.037 11.68 11.68 0.00 3.02
726 767 7.388224 GGGGTTCTTTTCTTAAGTACTCAGAAG 59.612 40.741 14.18 10.25 0.00 2.85
727 768 8.148999 GGGTTCTTTTCTTAAGTACTCAGAAGA 58.851 37.037 14.18 11.94 0.00 2.87
728 769 9.713713 GGTTCTTTTCTTAAGTACTCAGAAGAT 57.286 33.333 14.18 0.00 0.00 2.40
787 828 8.742554 ATCGAAAATTCAAAGTTGTTATGGAC 57.257 30.769 0.00 0.00 0.00 4.02
804 845 4.077184 CCGGCCCAACGTGAGCTA 62.077 66.667 0.00 0.00 0.00 3.32
805 846 2.186903 CGGCCCAACGTGAGCTAT 59.813 61.111 0.00 0.00 0.00 2.97
806 847 1.440060 CGGCCCAACGTGAGCTATA 59.560 57.895 0.00 0.00 0.00 1.31
807 848 0.033504 CGGCCCAACGTGAGCTATAT 59.966 55.000 0.00 0.00 0.00 0.86
808 849 1.540363 CGGCCCAACGTGAGCTATATT 60.540 52.381 0.00 0.00 0.00 1.28
809 850 2.288579 CGGCCCAACGTGAGCTATATTA 60.289 50.000 0.00 0.00 0.00 0.98
810 851 3.064931 GGCCCAACGTGAGCTATATTAC 58.935 50.000 0.00 0.00 0.00 1.89
811 852 2.729882 GCCCAACGTGAGCTATATTACG 59.270 50.000 0.00 0.00 41.86 3.18
812 853 2.729882 CCCAACGTGAGCTATATTACGC 59.270 50.000 0.00 0.00 39.94 4.42
813 854 3.552273 CCCAACGTGAGCTATATTACGCT 60.552 47.826 0.00 0.00 39.94 5.07
819 860 2.882324 GAGCTATATTACGCTCCCAGC 58.118 52.381 9.11 0.00 45.21 4.85
865 906 1.489649 TCTACTCCTCGTGGGTCTAGG 59.510 57.143 3.23 0.00 36.25 3.02
872 916 2.379972 CTCGTGGGTCTAGGATGTTCT 58.620 52.381 0.00 0.00 0.00 3.01
911 955 5.422331 ACGGTAAAATCATCTTCTCCTCTCA 59.578 40.000 0.00 0.00 0.00 3.27
915 965 2.166907 TCATCTTCTCCTCTCACCCC 57.833 55.000 0.00 0.00 0.00 4.95
937 987 2.047844 GGCTGACTGCTCTTGCGA 60.048 61.111 4.20 0.00 43.34 5.10
1046 1096 3.878519 CGAGGGCGAGGAGACGAC 61.879 72.222 0.00 0.00 40.82 4.34
1165 1215 2.603776 GGGAGGTATCGCCCCGAT 60.604 66.667 2.74 5.41 45.92 4.18
1186 1236 2.510906 CCCATCCATCCACCCGTC 59.489 66.667 0.00 0.00 0.00 4.79
1231 1282 1.195115 TTTGAGATCCCGACCCTGAG 58.805 55.000 0.00 0.00 0.00 3.35
1258 1309 2.613026 TTAGGACATATGGTGGTGCG 57.387 50.000 7.80 0.00 0.00 5.34
1288 1339 2.283821 TTCCATTGGTGGGCTGGC 60.284 61.111 1.86 0.00 46.06 4.85
1303 1354 2.026169 GGCTGGCTCTTAGGGTTAGTTT 60.026 50.000 0.00 0.00 0.00 2.66
1304 1355 3.561528 GGCTGGCTCTTAGGGTTAGTTTT 60.562 47.826 0.00 0.00 0.00 2.43
1306 1357 3.933332 CTGGCTCTTAGGGTTAGTTTTCG 59.067 47.826 0.00 0.00 0.00 3.46
1307 1358 2.676839 GGCTCTTAGGGTTAGTTTTCGC 59.323 50.000 0.00 0.00 0.00 4.70
1308 1359 3.332034 GCTCTTAGGGTTAGTTTTCGCA 58.668 45.455 0.00 0.00 0.00 5.10
1309 1360 3.371285 GCTCTTAGGGTTAGTTTTCGCAG 59.629 47.826 0.00 0.00 0.00 5.18
1310 1361 3.933332 CTCTTAGGGTTAGTTTTCGCAGG 59.067 47.826 0.00 0.00 0.00 4.85
1647 1698 4.313020 ACTGAGAAGGATGCAAGGATTT 57.687 40.909 0.00 0.00 0.00 2.17
1648 1699 5.441718 ACTGAGAAGGATGCAAGGATTTA 57.558 39.130 0.00 0.00 0.00 1.40
1658 1709 7.806180 AGGATGCAAGGATTTATAGTTAGTGT 58.194 34.615 0.00 0.00 0.00 3.55
1682 1734 3.809279 TGATAATTGATGCTCGATTGCGT 59.191 39.130 8.20 0.00 38.98 5.24
1708 1760 7.394016 TCCACTCAGTCAGCTAATGAATTTAA 58.606 34.615 0.00 0.00 40.43 1.52
1788 1843 7.510685 TGCCTTACTAGAAGATATTGTCCTGAT 59.489 37.037 0.00 0.00 0.00 2.90
1821 1876 4.511826 GTGGTTGAGTATTAGTATGCAGGC 59.488 45.833 0.00 0.00 0.00 4.85
1971 2027 5.353938 TGACTGCTGTACGAAACTAACTTT 58.646 37.500 0.00 0.00 0.00 2.66
2029 2118 4.393680 TGTTCCTGAAATTTTACGGGATCG 59.606 41.667 7.98 0.00 40.61 3.69
2063 2152 7.119699 TGTTCTGGTCTGTAATAAATGAAGCAG 59.880 37.037 0.00 0.00 33.35 4.24
2110 2366 7.734924 TGATAAATTATTGGACTGCTGCTAG 57.265 36.000 0.00 0.00 0.00 3.42
2122 2378 1.205655 TGCTGCTAGTAACTGCCTCTG 59.794 52.381 0.00 0.00 0.00 3.35
2176 2432 8.507249 ACTTCATGTCTTACTATGCTGTTTTTC 58.493 33.333 0.00 0.00 0.00 2.29
2233 2497 2.287608 CGTTGAAGAGTTTTGCCTTCCC 60.288 50.000 0.00 0.00 38.33 3.97
2234 2498 2.693074 GTTGAAGAGTTTTGCCTTCCCA 59.307 45.455 0.00 0.00 38.33 4.37
2396 2660 4.391523 GCTGAACTGGAATCTTCTGAAGAC 59.608 45.833 21.47 10.39 41.01 3.01
2453 2717 9.394477 GTATGTTTCTTGAAATTGGTAAGACAC 57.606 33.333 0.00 0.00 33.79 3.67
2459 2723 7.414436 TCTTGAAATTGGTAAGACACTTTTCG 58.586 34.615 0.00 0.00 0.00 3.46
2485 2749 2.232941 GGTTGACAACTCGGAGGACATA 59.767 50.000 17.52 0.00 0.00 2.29
2559 2824 5.302059 ACATGCAGTAGTTCGGTCATAGTAT 59.698 40.000 0.00 0.00 0.00 2.12
2820 3319 5.209818 ACACTCGTTCTATCCAACTTGAA 57.790 39.130 0.00 0.00 0.00 2.69
2856 3355 1.074775 GGACTGTGGTGATTGGGCA 59.925 57.895 0.00 0.00 0.00 5.36
2865 3372 1.528076 TGATTGGGCACTGCAACGT 60.528 52.632 2.82 0.00 0.00 3.99
2901 3408 2.009774 GTTTACATGGATGCGACTGCT 58.990 47.619 0.00 0.00 43.34 4.24
2916 3423 0.035725 CTGCTTGAGTGCCTGATCCA 60.036 55.000 0.00 0.00 0.00 3.41
2937 3444 3.347590 TCTCCCTCCTCGGCTCCA 61.348 66.667 0.00 0.00 0.00 3.86
3016 3523 1.070786 GGCTTGTCCGTTGACTCCA 59.929 57.895 0.00 0.00 42.28 3.86
3048 3555 2.546494 GCGCTGGCTGAGTTTGTGT 61.546 57.895 0.00 0.00 35.83 3.72
3115 3622 3.367910 GGTTCCTTGTTTGCTTGACAACA 60.368 43.478 0.00 0.00 38.23 3.33
3349 3856 3.929610 TGCAAAGGTTTTTACTGCACAAC 59.070 39.130 0.00 0.00 0.00 3.32
3605 4114 4.347360 TCATGTCAGGATAGATGCAAGG 57.653 45.455 0.00 0.00 0.00 3.61
3715 4224 1.450848 CCGTGGACATGCAGATGCT 60.451 57.895 6.35 0.00 42.66 3.79
3716 4225 0.179076 CCGTGGACATGCAGATGCTA 60.179 55.000 6.35 0.00 42.66 3.49
3721 4230 1.001293 GGACATGCAGATGCTATCCGA 59.999 52.381 6.35 0.00 42.66 4.55
3730 4239 2.119801 ATGCTATCCGATTGCATCCC 57.880 50.000 20.39 0.00 46.08 3.85
3753 4262 2.362397 AGGATAGCAGTACCATGTGTCG 59.638 50.000 0.00 0.00 0.00 4.35
3764 4273 2.290641 ACCATGTGTCGGCCAGAAATTA 60.291 45.455 2.24 0.00 0.00 1.40
3805 4315 6.853872 GCGAAAATACTGAACACATACAACAA 59.146 34.615 0.00 0.00 0.00 2.83
3846 4356 1.691196 ATCCCCATGCATACCAAACG 58.309 50.000 0.00 0.00 0.00 3.60
3910 4496 4.574674 ATCCCATTGCTAAGAACTGTGA 57.425 40.909 0.00 0.00 0.00 3.58
3938 4524 3.643237 ACTTGCTAGACTAGGCCATGTA 58.357 45.455 5.01 0.00 0.00 2.29
3940 4526 4.656112 ACTTGCTAGACTAGGCCATGTAAT 59.344 41.667 5.01 0.00 0.00 1.89
3990 4581 7.391148 TGTAGTCTAATTTCAAATGCCCTTC 57.609 36.000 0.00 0.00 0.00 3.46
4020 4611 6.704493 ACTTGAATGAGCGTTTCTGTTAAGTA 59.296 34.615 0.00 0.00 0.00 2.24
4029 4620 5.684184 GCGTTTCTGTTAAGTAAGGGTTTTG 59.316 40.000 0.00 0.00 0.00 2.44
4445 5038 6.144845 AGGAAAAGATGAAGGAGGAAATGA 57.855 37.500 0.00 0.00 0.00 2.57
4453 5046 6.830838 AGATGAAGGAGGAAATGATTGGTAAC 59.169 38.462 0.00 0.00 0.00 2.50
4636 5229 7.062255 GCTGGCACAATTTTCTTTAGTGATTAC 59.938 37.037 0.00 0.00 38.70 1.89
4768 5361 6.513806 TGAATTATTCAGACACCATGGTTG 57.486 37.500 16.84 11.99 34.08 3.77
4834 5428 2.816087 CCTCAGACCTTGTGACATTTGG 59.184 50.000 0.00 0.00 0.00 3.28
5061 5670 1.695597 CCATTGAGGGGGAGCCTCT 60.696 63.158 0.00 0.00 36.82 3.69
5083 5692 7.676043 CCTCTAGTATATCCTTTGAATCCTGGA 59.324 40.741 0.00 0.00 0.00 3.86
5127 5736 4.350368 TGTAATGGTCTTGCACTCTTGA 57.650 40.909 0.00 0.00 0.00 3.02
5211 5875 5.063312 TGCTTTCACGTATGATACACATGTG 59.937 40.000 24.25 24.25 39.77 3.21
5265 5929 9.498307 TTTTGTAAACGACTCTTCATTTTCTTC 57.502 29.630 0.00 0.00 0.00 2.87
5309 5974 3.129852 TGTCGAATTGCTTTTATGGCG 57.870 42.857 0.00 0.00 0.00 5.69
5311 5976 1.199624 CGAATTGCTTTTATGGCGGC 58.800 50.000 0.00 0.00 0.00 6.53
5312 5977 1.468908 CGAATTGCTTTTATGGCGGCA 60.469 47.619 16.34 16.34 0.00 5.69
5313 5978 2.195922 GAATTGCTTTTATGGCGGCAG 58.804 47.619 19.29 4.06 36.06 4.85
5314 5979 1.473258 ATTGCTTTTATGGCGGCAGA 58.527 45.000 19.29 10.83 36.06 4.26
5315 5980 1.473258 TTGCTTTTATGGCGGCAGAT 58.527 45.000 19.29 3.67 36.06 2.90
5316 5981 1.024271 TGCTTTTATGGCGGCAGATC 58.976 50.000 19.29 3.42 0.00 2.75
5317 5982 0.312102 GCTTTTATGGCGGCAGATCC 59.688 55.000 19.29 0.00 0.00 3.36
5336 6001 3.239449 TCCTTAGCTTCTCACCTGTTGA 58.761 45.455 0.00 0.00 0.00 3.18
5342 6007 3.009916 AGCTTCTCACCTGTTGATCCATT 59.990 43.478 0.00 0.00 32.17 3.16
5400 6071 1.103398 GCTTGGCCTGTCACAGTGTT 61.103 55.000 3.32 0.00 0.00 3.32
5401 6072 1.392589 CTTGGCCTGTCACAGTGTTT 58.607 50.000 3.32 0.00 0.00 2.83
5420 6091 5.525378 GTGTTTATCATGCTAGGGAGTTCAG 59.475 44.000 0.00 0.00 0.00 3.02
5431 6102 2.175715 AGGGAGTTCAGTTTTGAGCCTT 59.824 45.455 0.00 0.00 35.36 4.35
5457 6128 4.422840 TCATGCAATTTAGTTTCCATGCG 58.577 39.130 0.00 0.00 36.62 4.73
5493 6164 5.880332 GTGATAGGTTTCAACTTGATGCCTA 59.120 40.000 17.35 17.35 37.45 3.93
5494 6165 6.374333 GTGATAGGTTTCAACTTGATGCCTAA 59.626 38.462 18.28 7.29 37.00 2.69
5533 6206 0.467290 GTTGTGCAAACTGGAGGGGA 60.467 55.000 0.00 0.00 0.00 4.81
5581 6257 8.141268 TGTATCAACGAATATGCAGTTATCTCA 58.859 33.333 0.00 0.00 0.00 3.27
5586 6262 5.069119 ACGAATATGCAGTTATCTCAGTCCA 59.931 40.000 0.00 0.00 0.00 4.02
5617 6293 2.573340 CATGCGCCTGGGGAAAAC 59.427 61.111 15.77 0.00 0.00 2.43
5618 6294 2.117206 ATGCGCCTGGGGAAAACA 59.883 55.556 15.77 3.03 0.00 2.83
5619 6295 2.275380 ATGCGCCTGGGGAAAACAC 61.275 57.895 15.77 0.00 0.00 3.32
5626 6302 0.380378 CTGGGGAAAACACACACACG 59.620 55.000 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.849151 ACTTCTGGTTTCTTTGTAATACCCT 58.151 36.000 0.00 0.00 0.00 4.34
1 2 8.625786 TTACTTCTGGTTTCTTTGTAATACCC 57.374 34.615 0.00 0.00 0.00 3.69
26 27 7.827236 TGGTCTACGGATCTGATTGTAATTTTT 59.173 33.333 9.00 0.00 0.00 1.94
27 28 7.280205 GTGGTCTACGGATCTGATTGTAATTTT 59.720 37.037 9.00 0.00 0.00 1.82
28 29 6.761714 GTGGTCTACGGATCTGATTGTAATTT 59.238 38.462 9.00 0.00 0.00 1.82
29 30 6.281405 GTGGTCTACGGATCTGATTGTAATT 58.719 40.000 9.00 0.00 0.00 1.40
30 31 5.221461 GGTGGTCTACGGATCTGATTGTAAT 60.221 44.000 9.00 0.00 0.00 1.89
31 32 4.098960 GGTGGTCTACGGATCTGATTGTAA 59.901 45.833 9.00 0.00 0.00 2.41
32 33 3.635373 GGTGGTCTACGGATCTGATTGTA 59.365 47.826 9.00 0.00 0.00 2.41
33 34 2.431057 GGTGGTCTACGGATCTGATTGT 59.569 50.000 9.00 0.00 0.00 2.71
34 35 2.695666 AGGTGGTCTACGGATCTGATTG 59.304 50.000 9.00 0.00 0.00 2.67
35 36 3.033659 AGGTGGTCTACGGATCTGATT 57.966 47.619 9.00 0.00 0.00 2.57
36 37 2.757894 AGGTGGTCTACGGATCTGAT 57.242 50.000 9.00 0.00 0.00 2.90
37 38 2.748798 GCTAGGTGGTCTACGGATCTGA 60.749 54.545 9.00 0.00 0.00 3.27
38 39 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
39 40 1.214673 TGCTAGGTGGTCTACGGATCT 59.785 52.381 0.00 0.00 0.00 2.75
40 41 1.337387 GTGCTAGGTGGTCTACGGATC 59.663 57.143 0.00 0.00 0.00 3.36
41 42 1.400737 GTGCTAGGTGGTCTACGGAT 58.599 55.000 0.00 0.00 0.00 4.18
42 43 0.682209 GGTGCTAGGTGGTCTACGGA 60.682 60.000 0.00 0.00 0.00 4.69
43 44 1.814527 GGTGCTAGGTGGTCTACGG 59.185 63.158 0.00 0.00 0.00 4.02
44 45 1.028330 TCGGTGCTAGGTGGTCTACG 61.028 60.000 0.00 0.00 0.00 3.51
45 46 0.455005 GTCGGTGCTAGGTGGTCTAC 59.545 60.000 0.00 0.00 0.00 2.59
46 47 0.330604 AGTCGGTGCTAGGTGGTCTA 59.669 55.000 0.00 0.00 0.00 2.59
47 48 0.330604 TAGTCGGTGCTAGGTGGTCT 59.669 55.000 0.00 0.00 0.00 3.85
48 49 0.455005 GTAGTCGGTGCTAGGTGGTC 59.545 60.000 0.00 0.00 0.00 4.02
49 50 0.039326 AGTAGTCGGTGCTAGGTGGT 59.961 55.000 0.00 0.00 0.00 4.16
50 51 1.948145 CTAGTAGTCGGTGCTAGGTGG 59.052 57.143 0.00 0.00 37.72 4.61
51 52 2.641305 ACTAGTAGTCGGTGCTAGGTG 58.359 52.381 12.86 0.00 43.84 4.00
52 53 3.432890 GGTACTAGTAGTCGGTGCTAGGT 60.433 52.174 5.96 4.59 43.84 3.08
53 54 3.137533 GGTACTAGTAGTCGGTGCTAGG 58.862 54.545 5.96 0.26 43.84 3.02
54 55 2.799412 CGGTACTAGTAGTCGGTGCTAG 59.201 54.545 5.96 8.56 44.80 3.42
55 56 2.483714 CCGGTACTAGTAGTCGGTGCTA 60.484 54.545 25.14 0.00 36.38 3.49
56 57 1.661341 CGGTACTAGTAGTCGGTGCT 58.339 55.000 5.96 0.00 0.00 4.40
57 58 0.659957 CCGGTACTAGTAGTCGGTGC 59.340 60.000 25.14 6.26 36.38 5.01
58 59 2.208431 CTCCGGTACTAGTAGTCGGTG 58.792 57.143 28.86 25.23 41.27 4.94
59 60 1.474143 GCTCCGGTACTAGTAGTCGGT 60.474 57.143 28.86 0.00 41.27 4.69
60 61 1.224965 GCTCCGGTACTAGTAGTCGG 58.775 60.000 26.50 26.50 41.80 4.79
61 62 1.945387 TGCTCCGGTACTAGTAGTCG 58.055 55.000 5.96 10.30 0.00 4.18
62 63 2.033174 GCTTGCTCCGGTACTAGTAGTC 59.967 54.545 5.96 0.00 0.00 2.59
63 64 2.022934 GCTTGCTCCGGTACTAGTAGT 58.977 52.381 8.14 8.14 0.00 2.73
64 65 2.033550 CAGCTTGCTCCGGTACTAGTAG 59.966 54.545 1.87 0.00 0.00 2.57
65 66 2.022195 CAGCTTGCTCCGGTACTAGTA 58.978 52.381 0.00 0.00 0.00 1.82
66 67 0.818296 CAGCTTGCTCCGGTACTAGT 59.182 55.000 0.00 0.00 0.00 2.57
67 68 1.066303 CTCAGCTTGCTCCGGTACTAG 59.934 57.143 0.00 2.33 0.00 2.57
68 69 1.103803 CTCAGCTTGCTCCGGTACTA 58.896 55.000 0.00 0.00 0.00 1.82
69 70 1.608717 CCTCAGCTTGCTCCGGTACT 61.609 60.000 0.00 0.00 0.00 2.73
70 71 1.153549 CCTCAGCTTGCTCCGGTAC 60.154 63.158 0.00 0.00 0.00 3.34
71 72 3.019003 GCCTCAGCTTGCTCCGGTA 62.019 63.158 0.00 0.00 35.50 4.02
72 73 4.400961 GCCTCAGCTTGCTCCGGT 62.401 66.667 0.00 0.00 35.50 5.28
96 97 1.740296 AACGAAAGGGCGATGACGG 60.740 57.895 0.00 0.00 40.15 4.79
97 98 1.289109 ACAACGAAAGGGCGATGACG 61.289 55.000 0.00 0.00 37.47 4.35
98 99 0.442699 GACAACGAAAGGGCGATGAC 59.557 55.000 0.00 0.00 37.47 3.06
99 100 0.034198 TGACAACGAAAGGGCGATGA 59.966 50.000 0.00 0.00 37.47 2.92
100 101 0.871722 TTGACAACGAAAGGGCGATG 59.128 50.000 0.00 0.00 39.53 3.84
101 102 1.600023 TTTGACAACGAAAGGGCGAT 58.400 45.000 0.00 0.00 34.83 4.58
102 103 1.380524 TTTTGACAACGAAAGGGCGA 58.619 45.000 0.00 0.00 34.83 5.54
103 104 2.415697 ATTTTGACAACGAAAGGGCG 57.584 45.000 0.00 0.00 33.58 6.13
104 105 4.116238 TGAAATTTTGACAACGAAAGGGC 58.884 39.130 0.00 0.00 33.58 5.19
105 106 5.276820 GCTTGAAATTTTGACAACGAAAGGG 60.277 40.000 0.00 0.00 33.58 3.95
106 107 5.519927 AGCTTGAAATTTTGACAACGAAAGG 59.480 36.000 0.00 0.00 33.58 3.11
107 108 6.573617 AGCTTGAAATTTTGACAACGAAAG 57.426 33.333 0.00 0.00 33.58 2.62
108 109 6.959671 AAGCTTGAAATTTTGACAACGAAA 57.040 29.167 0.00 0.00 34.43 3.46
109 110 6.959671 AAAGCTTGAAATTTTGACAACGAA 57.040 29.167 0.00 0.00 0.00 3.85
110 111 6.587990 TGAAAAGCTTGAAATTTTGACAACGA 59.412 30.769 0.00 0.00 0.00 3.85
111 112 6.760127 TGAAAAGCTTGAAATTTTGACAACG 58.240 32.000 0.00 0.00 0.00 4.10
114 115 9.376075 TGTATTGAAAAGCTTGAAATTTTGACA 57.624 25.926 0.00 0.00 0.00 3.58
120 121 9.211485 CCTTGATGTATTGAAAAGCTTGAAATT 57.789 29.630 0.00 0.00 0.00 1.82
121 122 7.820872 CCCTTGATGTATTGAAAAGCTTGAAAT 59.179 33.333 0.00 3.27 0.00 2.17
122 123 7.153985 CCCTTGATGTATTGAAAAGCTTGAAA 58.846 34.615 0.00 0.00 0.00 2.69
123 124 6.267471 ACCCTTGATGTATTGAAAAGCTTGAA 59.733 34.615 0.00 0.00 0.00 2.69
124 125 5.774690 ACCCTTGATGTATTGAAAAGCTTGA 59.225 36.000 0.00 0.00 0.00 3.02
125 126 6.029346 ACCCTTGATGTATTGAAAAGCTTG 57.971 37.500 0.00 0.00 0.00 4.01
126 127 6.267471 TGAACCCTTGATGTATTGAAAAGCTT 59.733 34.615 0.00 0.00 0.00 3.74
127 128 5.774690 TGAACCCTTGATGTATTGAAAAGCT 59.225 36.000 0.00 0.00 0.00 3.74
128 129 5.863935 GTGAACCCTTGATGTATTGAAAAGC 59.136 40.000 0.00 0.00 0.00 3.51
129 130 6.072728 TCGTGAACCCTTGATGTATTGAAAAG 60.073 38.462 0.00 0.00 0.00 2.27
130 131 5.765677 TCGTGAACCCTTGATGTATTGAAAA 59.234 36.000 0.00 0.00 0.00 2.29
131 132 5.309638 TCGTGAACCCTTGATGTATTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
132 133 4.900684 TCGTGAACCCTTGATGTATTGAA 58.099 39.130 0.00 0.00 0.00 2.69
133 134 4.545208 TCGTGAACCCTTGATGTATTGA 57.455 40.909 0.00 0.00 0.00 2.57
134 135 6.918892 TTATCGTGAACCCTTGATGTATTG 57.081 37.500 0.00 0.00 0.00 1.90
135 136 9.436957 GATATTATCGTGAACCCTTGATGTATT 57.563 33.333 0.00 0.00 0.00 1.89
136 137 8.593679 TGATATTATCGTGAACCCTTGATGTAT 58.406 33.333 0.00 0.00 0.00 2.29
137 138 7.958088 TGATATTATCGTGAACCCTTGATGTA 58.042 34.615 0.00 0.00 0.00 2.29
138 139 6.826668 TGATATTATCGTGAACCCTTGATGT 58.173 36.000 0.00 0.00 0.00 3.06
139 140 7.728847 TTGATATTATCGTGAACCCTTGATG 57.271 36.000 0.00 0.00 0.00 3.07
140 141 8.786898 CATTTGATATTATCGTGAACCCTTGAT 58.213 33.333 0.00 0.00 0.00 2.57
141 142 7.990314 TCATTTGATATTATCGTGAACCCTTGA 59.010 33.333 0.00 0.00 0.00 3.02
142 143 8.153479 TCATTTGATATTATCGTGAACCCTTG 57.847 34.615 0.00 0.00 0.00 3.61
143 144 8.924511 ATCATTTGATATTATCGTGAACCCTT 57.075 30.769 9.06 0.00 32.01 3.95
144 145 8.156820 TGATCATTTGATATTATCGTGAACCCT 58.843 33.333 0.00 0.00 34.37 4.34
145 146 8.230486 GTGATCATTTGATATTATCGTGAACCC 58.770 37.037 0.00 4.88 34.37 4.11
146 147 8.773645 TGTGATCATTTGATATTATCGTGAACC 58.226 33.333 0.00 6.44 34.37 3.62
150 151 9.058424 GCATTGTGATCATTTGATATTATCGTG 57.942 33.333 0.00 0.00 34.37 4.35
151 152 8.785946 TGCATTGTGATCATTTGATATTATCGT 58.214 29.630 0.00 0.00 34.37 3.73
152 153 9.783256 ATGCATTGTGATCATTTGATATTATCG 57.217 29.630 0.00 0.00 34.37 2.92
155 156 9.080097 TGGATGCATTGTGATCATTTGATATTA 57.920 29.630 0.00 0.00 34.37 0.98
156 157 7.958088 TGGATGCATTGTGATCATTTGATATT 58.042 30.769 0.00 0.00 34.37 1.28
157 158 7.533289 TGGATGCATTGTGATCATTTGATAT 57.467 32.000 0.00 0.00 34.37 1.63
158 159 6.963083 TGGATGCATTGTGATCATTTGATA 57.037 33.333 0.00 0.00 34.37 2.15
159 160 5.862678 TGGATGCATTGTGATCATTTGAT 57.137 34.783 0.00 0.00 37.51 2.57
160 161 5.394773 CCTTGGATGCATTGTGATCATTTGA 60.395 40.000 0.00 0.00 0.00 2.69
161 162 4.808895 CCTTGGATGCATTGTGATCATTTG 59.191 41.667 0.00 0.00 0.00 2.32
162 163 4.468510 ACCTTGGATGCATTGTGATCATTT 59.531 37.500 0.00 0.00 0.00 2.32
163 164 4.028131 ACCTTGGATGCATTGTGATCATT 58.972 39.130 0.00 0.00 0.00 2.57
164 165 3.638860 ACCTTGGATGCATTGTGATCAT 58.361 40.909 0.00 0.00 0.00 2.45
165 166 3.090210 ACCTTGGATGCATTGTGATCA 57.910 42.857 0.00 0.00 0.00 2.92
166 167 3.444742 TGAACCTTGGATGCATTGTGATC 59.555 43.478 0.00 0.00 0.00 2.92
167 168 3.194116 GTGAACCTTGGATGCATTGTGAT 59.806 43.478 0.00 0.00 0.00 3.06
168 169 2.557924 GTGAACCTTGGATGCATTGTGA 59.442 45.455 0.00 0.00 0.00 3.58
169 170 2.296752 TGTGAACCTTGGATGCATTGTG 59.703 45.455 0.00 0.00 0.00 3.33
170 171 2.297033 GTGTGAACCTTGGATGCATTGT 59.703 45.455 0.00 0.00 0.00 2.71
171 172 2.353011 GGTGTGAACCTTGGATGCATTG 60.353 50.000 0.00 0.00 0.00 2.82
172 173 1.895131 GGTGTGAACCTTGGATGCATT 59.105 47.619 0.00 0.00 0.00 3.56
173 174 1.203038 TGGTGTGAACCTTGGATGCAT 60.203 47.619 0.00 0.00 0.00 3.96
174 175 0.184692 TGGTGTGAACCTTGGATGCA 59.815 50.000 0.00 0.00 0.00 3.96
175 176 1.549203 ATGGTGTGAACCTTGGATGC 58.451 50.000 0.00 0.00 0.00 3.91
176 177 2.684881 GCTATGGTGTGAACCTTGGATG 59.315 50.000 0.00 0.00 0.00 3.51
177 178 2.578021 AGCTATGGTGTGAACCTTGGAT 59.422 45.455 0.00 0.00 0.00 3.41
178 179 1.985159 AGCTATGGTGTGAACCTTGGA 59.015 47.619 0.00 0.00 0.00 3.53
179 180 2.496899 AGCTATGGTGTGAACCTTGG 57.503 50.000 0.00 0.00 0.00 3.61
180 181 4.579869 ACTTAGCTATGGTGTGAACCTTG 58.420 43.478 11.03 0.00 0.00 3.61
181 182 4.910458 ACTTAGCTATGGTGTGAACCTT 57.090 40.909 11.03 0.00 0.00 3.50
182 183 4.910458 AACTTAGCTATGGTGTGAACCT 57.090 40.909 11.03 0.00 0.00 3.50
183 184 5.935789 TGTAAACTTAGCTATGGTGTGAACC 59.064 40.000 11.03 0.00 0.00 3.62
184 185 6.872020 TCTGTAAACTTAGCTATGGTGTGAAC 59.128 38.462 11.03 3.15 0.00 3.18
185 186 6.999950 TCTGTAAACTTAGCTATGGTGTGAA 58.000 36.000 11.03 0.00 0.00 3.18
186 187 6.599356 TCTGTAAACTTAGCTATGGTGTGA 57.401 37.500 11.03 0.00 0.00 3.58
187 188 7.667043 TTTCTGTAAACTTAGCTATGGTGTG 57.333 36.000 11.03 0.00 0.00 3.82
188 189 8.863872 ATTTTCTGTAAACTTAGCTATGGTGT 57.136 30.769 11.03 3.92 0.00 4.16
189 190 9.559958 CAATTTTCTGTAAACTTAGCTATGGTG 57.440 33.333 11.03 0.00 0.00 4.17
190 191 9.515226 TCAATTTTCTGTAAACTTAGCTATGGT 57.485 29.630 11.03 1.33 0.00 3.55
194 195 9.569122 AGGTTCAATTTTCTGTAAACTTAGCTA 57.431 29.630 0.00 0.00 0.00 3.32
195 196 8.465273 AGGTTCAATTTTCTGTAAACTTAGCT 57.535 30.769 0.00 0.00 0.00 3.32
196 197 9.529325 AAAGGTTCAATTTTCTGTAAACTTAGC 57.471 29.630 0.00 0.00 0.00 3.09
203 204 9.255304 GCAATGTAAAGGTTCAATTTTCTGTAA 57.745 29.630 0.00 0.00 0.00 2.41
204 205 8.637986 AGCAATGTAAAGGTTCAATTTTCTGTA 58.362 29.630 0.00 0.00 0.00 2.74
205 206 7.439056 CAGCAATGTAAAGGTTCAATTTTCTGT 59.561 33.333 0.00 0.00 0.00 3.41
206 207 7.652909 TCAGCAATGTAAAGGTTCAATTTTCTG 59.347 33.333 0.00 0.00 0.00 3.02
207 208 7.725251 TCAGCAATGTAAAGGTTCAATTTTCT 58.275 30.769 0.00 0.00 0.00 2.52
208 209 7.945033 TCAGCAATGTAAAGGTTCAATTTTC 57.055 32.000 0.00 0.00 0.00 2.29
209 210 8.729805 TTTCAGCAATGTAAAGGTTCAATTTT 57.270 26.923 0.00 0.00 0.00 1.82
210 211 8.203485 TCTTTCAGCAATGTAAAGGTTCAATTT 58.797 29.630 0.00 0.00 32.33 1.82
211 212 7.725251 TCTTTCAGCAATGTAAAGGTTCAATT 58.275 30.769 0.00 0.00 32.33 2.32
212 213 7.288810 TCTTTCAGCAATGTAAAGGTTCAAT 57.711 32.000 0.00 0.00 32.33 2.57
213 214 6.707440 TCTTTCAGCAATGTAAAGGTTCAA 57.293 33.333 0.00 0.00 32.33 2.69
214 215 6.317789 CTCTTTCAGCAATGTAAAGGTTCA 57.682 37.500 0.00 0.00 32.33 3.18
229 230 2.015587 GGCTCTTGATGGCTCTTTCAG 58.984 52.381 0.00 0.00 0.00 3.02
230 231 1.632409 AGGCTCTTGATGGCTCTTTCA 59.368 47.619 0.00 0.00 35.30 2.69
231 232 2.416680 AGGCTCTTGATGGCTCTTTC 57.583 50.000 0.00 0.00 35.30 2.62
232 233 2.040813 TCAAGGCTCTTGATGGCTCTTT 59.959 45.455 12.03 0.00 39.47 2.52
233 234 1.632409 TCAAGGCTCTTGATGGCTCTT 59.368 47.619 12.03 0.00 39.47 2.85
234 235 1.283347 TCAAGGCTCTTGATGGCTCT 58.717 50.000 12.03 0.00 39.47 4.09
235 236 2.119801 TTCAAGGCTCTTGATGGCTC 57.880 50.000 15.50 0.00 39.47 4.70
236 237 2.241685 AGATTCAAGGCTCTTGATGGCT 59.758 45.455 15.50 11.22 42.26 4.75
237 238 2.617774 GAGATTCAAGGCTCTTGATGGC 59.382 50.000 15.50 9.69 0.00 4.40
238 239 3.882444 TGAGATTCAAGGCTCTTGATGG 58.118 45.455 15.50 0.00 32.44 3.51
239 240 4.211584 CGATGAGATTCAAGGCTCTTGATG 59.788 45.833 15.50 0.00 32.44 3.07
240 241 4.141756 ACGATGAGATTCAAGGCTCTTGAT 60.142 41.667 15.50 8.27 32.44 2.57
241 242 3.196469 ACGATGAGATTCAAGGCTCTTGA 59.804 43.478 12.03 12.03 32.44 3.02
242 243 3.529533 ACGATGAGATTCAAGGCTCTTG 58.470 45.455 8.22 8.22 32.44 3.02
243 244 3.902881 ACGATGAGATTCAAGGCTCTT 57.097 42.857 0.00 0.00 32.44 2.85
244 245 3.902881 AACGATGAGATTCAAGGCTCT 57.097 42.857 0.00 0.00 32.44 4.09
245 246 3.935203 TCAAACGATGAGATTCAAGGCTC 59.065 43.478 0.00 0.00 33.04 4.70
246 247 3.942829 TCAAACGATGAGATTCAAGGCT 58.057 40.909 0.00 0.00 33.04 4.58
247 248 4.889832 ATCAAACGATGAGATTCAAGGC 57.110 40.909 0.00 0.00 42.53 4.35
248 249 6.540189 AGGTTATCAAACGATGAGATTCAAGG 59.460 38.462 0.00 0.00 42.53 3.61
249 250 7.545362 AGGTTATCAAACGATGAGATTCAAG 57.455 36.000 0.00 0.00 42.53 3.02
250 251 7.390440 ACAAGGTTATCAAACGATGAGATTCAA 59.610 33.333 0.00 0.00 42.53 2.69
251 252 6.878923 ACAAGGTTATCAAACGATGAGATTCA 59.121 34.615 0.00 0.00 42.53 2.57
252 253 7.278868 AGACAAGGTTATCAAACGATGAGATTC 59.721 37.037 0.00 0.00 42.53 2.52
253 254 7.106239 AGACAAGGTTATCAAACGATGAGATT 58.894 34.615 0.00 0.00 42.53 2.40
254 255 6.644347 AGACAAGGTTATCAAACGATGAGAT 58.356 36.000 0.00 0.00 42.53 2.75
255 256 6.037786 AGACAAGGTTATCAAACGATGAGA 57.962 37.500 0.00 0.00 42.53 3.27
256 257 7.492669 ACATAGACAAGGTTATCAAACGATGAG 59.507 37.037 0.00 0.00 42.53 2.90
257 258 7.327975 ACATAGACAAGGTTATCAAACGATGA 58.672 34.615 0.00 0.00 43.67 2.92
258 259 7.539712 ACATAGACAAGGTTATCAAACGATG 57.460 36.000 0.00 0.00 36.39 3.84
259 260 7.438459 GCTACATAGACAAGGTTATCAAACGAT 59.562 37.037 0.00 0.00 36.39 3.73
260 261 6.755141 GCTACATAGACAAGGTTATCAAACGA 59.245 38.462 0.00 0.00 36.39 3.85
261 262 6.533723 TGCTACATAGACAAGGTTATCAAACG 59.466 38.462 0.00 0.00 36.39 3.60
262 263 7.843490 TGCTACATAGACAAGGTTATCAAAC 57.157 36.000 0.00 0.00 34.66 2.93
263 264 8.100791 ACTTGCTACATAGACAAGGTTATCAAA 58.899 33.333 18.73 0.00 39.51 2.69
264 265 7.549134 CACTTGCTACATAGACAAGGTTATCAA 59.451 37.037 18.73 0.00 39.51 2.57
265 266 7.041721 CACTTGCTACATAGACAAGGTTATCA 58.958 38.462 18.73 0.00 39.51 2.15
266 267 6.480320 CCACTTGCTACATAGACAAGGTTATC 59.520 42.308 18.73 0.00 39.51 1.75
267 268 6.349300 CCACTTGCTACATAGACAAGGTTAT 58.651 40.000 18.73 4.45 39.51 1.89
268 269 5.730550 CCACTTGCTACATAGACAAGGTTA 58.269 41.667 18.73 0.00 39.51 2.85
269 270 4.579869 CCACTTGCTACATAGACAAGGTT 58.420 43.478 18.73 5.14 39.51 3.50
270 271 3.619979 GCCACTTGCTACATAGACAAGGT 60.620 47.826 18.73 8.63 39.51 3.50
271 272 2.939103 GCCACTTGCTACATAGACAAGG 59.061 50.000 18.73 10.05 39.51 3.61
272 273 2.939103 GGCCACTTGCTACATAGACAAG 59.061 50.000 0.00 15.53 40.25 3.16
273 274 2.571653 AGGCCACTTGCTACATAGACAA 59.428 45.455 5.01 0.00 40.92 3.18
274 275 2.168521 GAGGCCACTTGCTACATAGACA 59.831 50.000 5.01 0.00 40.92 3.41
275 276 2.432510 AGAGGCCACTTGCTACATAGAC 59.567 50.000 5.01 0.00 40.92 2.59
276 277 2.695666 GAGAGGCCACTTGCTACATAGA 59.304 50.000 5.01 0.00 40.92 1.98
277 278 2.697751 AGAGAGGCCACTTGCTACATAG 59.302 50.000 5.01 0.00 40.92 2.23
278 279 2.752030 AGAGAGGCCACTTGCTACATA 58.248 47.619 5.01 0.00 40.92 2.29
279 280 1.577736 AGAGAGGCCACTTGCTACAT 58.422 50.000 5.01 0.00 40.92 2.29
280 281 1.352083 AAGAGAGGCCACTTGCTACA 58.648 50.000 5.01 0.00 40.92 2.74
281 282 2.481289 AAAGAGAGGCCACTTGCTAC 57.519 50.000 5.01 0.00 40.92 3.58
282 283 2.106511 ACAAAAGAGAGGCCACTTGCTA 59.893 45.455 5.01 0.00 40.92 3.49
283 284 1.133668 ACAAAAGAGAGGCCACTTGCT 60.134 47.619 5.01 0.00 40.92 3.91
284 285 1.322442 ACAAAAGAGAGGCCACTTGC 58.678 50.000 5.01 0.00 40.16 4.01
285 286 3.744660 AGTACAAAAGAGAGGCCACTTG 58.255 45.455 5.01 1.15 0.00 3.16
286 287 4.141482 TGAAGTACAAAAGAGAGGCCACTT 60.141 41.667 5.01 4.64 0.00 3.16
287 288 3.391296 TGAAGTACAAAAGAGAGGCCACT 59.609 43.478 5.01 2.83 0.00 4.00
288 289 3.740115 TGAAGTACAAAAGAGAGGCCAC 58.260 45.455 5.01 0.00 0.00 5.01
289 290 4.134563 GTTGAAGTACAAAAGAGAGGCCA 58.865 43.478 5.01 0.00 40.36 5.36
290 291 4.023963 GTGTTGAAGTACAAAAGAGAGGCC 60.024 45.833 0.00 0.00 40.36 5.19
291 292 4.816925 AGTGTTGAAGTACAAAAGAGAGGC 59.183 41.667 0.00 0.00 40.36 4.70
292 293 6.201806 CAGAGTGTTGAAGTACAAAAGAGAGG 59.798 42.308 0.00 0.00 40.36 3.69
293 294 6.980978 TCAGAGTGTTGAAGTACAAAAGAGAG 59.019 38.462 0.00 0.00 40.36 3.20
294 295 6.757010 GTCAGAGTGTTGAAGTACAAAAGAGA 59.243 38.462 0.00 0.00 40.36 3.10
295 296 6.758886 AGTCAGAGTGTTGAAGTACAAAAGAG 59.241 38.462 0.00 0.00 40.36 2.85
296 297 6.535150 CAGTCAGAGTGTTGAAGTACAAAAGA 59.465 38.462 0.00 0.00 40.36 2.52
297 298 6.238211 CCAGTCAGAGTGTTGAAGTACAAAAG 60.238 42.308 4.48 0.00 40.36 2.27
298 299 5.584649 CCAGTCAGAGTGTTGAAGTACAAAA 59.415 40.000 4.48 0.00 40.36 2.44
299 300 5.116180 CCAGTCAGAGTGTTGAAGTACAAA 58.884 41.667 4.48 0.00 40.36 2.83
300 301 4.693283 CCAGTCAGAGTGTTGAAGTACAA 58.307 43.478 4.48 0.00 36.02 2.41
301 302 3.492656 GCCAGTCAGAGTGTTGAAGTACA 60.493 47.826 4.48 0.00 0.00 2.90
330 331 8.523915 TTTTCATATTGTTGTAGATGCCAGAT 57.476 30.769 0.00 0.00 0.00 2.90
422 423 9.653287 AGATACACGATTTCTTCATAAAACAGA 57.347 29.630 0.00 0.00 0.00 3.41
423 424 9.907576 GAGATACACGATTTCTTCATAAAACAG 57.092 33.333 0.00 0.00 0.00 3.16
453 454 8.437360 AAACATATTTTCGAGATACATGAGCA 57.563 30.769 0.00 0.00 0.00 4.26
541 545 5.620206 TGTTCTGACCACACATAGATTTGT 58.380 37.500 0.00 0.00 0.00 2.83
555 562 1.544246 CCCGGGAAAATTGTTCTGACC 59.456 52.381 18.48 0.00 0.00 4.02
637 645 8.745590 GGAGCCCAAAAACAACTTAAGATATTA 58.254 33.333 10.09 0.00 0.00 0.98
652 660 1.127343 CCAAACCTGGAGCCCAAAAA 58.873 50.000 0.00 0.00 46.92 1.94
662 670 5.711976 AGTCAATCATAACTTCCAAACCTGG 59.288 40.000 0.00 0.00 45.08 4.45
663 671 6.824305 AGTCAATCATAACTTCCAAACCTG 57.176 37.500 0.00 0.00 0.00 4.00
664 672 8.793592 GTTAAGTCAATCATAACTTCCAAACCT 58.206 33.333 0.00 0.00 37.02 3.50
665 673 8.573035 TGTTAAGTCAATCATAACTTCCAAACC 58.427 33.333 0.00 0.00 37.02 3.27
666 674 9.959749 TTGTTAAGTCAATCATAACTTCCAAAC 57.040 29.630 0.00 0.00 37.02 2.93
695 703 8.777578 AGTACTTAAGAAAAGAACCCCAATTT 57.222 30.769 10.09 0.00 0.00 1.82
696 704 8.002459 TGAGTACTTAAGAAAAGAACCCCAATT 58.998 33.333 10.09 0.00 0.00 2.32
700 708 6.766429 TCTGAGTACTTAAGAAAAGAACCCC 58.234 40.000 10.09 0.00 0.00 4.95
701 709 8.148999 TCTTCTGAGTACTTAAGAAAAGAACCC 58.851 37.037 10.09 0.00 29.93 4.11
702 710 9.713713 ATCTTCTGAGTACTTAAGAAAAGAACC 57.286 33.333 10.09 0.00 32.13 3.62
731 772 8.758829 TGTATCTTCTGAGTATCTGGCTAAAAA 58.241 33.333 0.00 0.00 34.50 1.94
732 773 8.198109 GTGTATCTTCTGAGTATCTGGCTAAAA 58.802 37.037 0.00 0.00 34.50 1.52
733 774 7.342026 TGTGTATCTTCTGAGTATCTGGCTAAA 59.658 37.037 0.00 0.00 34.50 1.85
734 775 6.833933 TGTGTATCTTCTGAGTATCTGGCTAA 59.166 38.462 0.00 0.00 34.50 3.09
735 776 6.365520 TGTGTATCTTCTGAGTATCTGGCTA 58.634 40.000 0.00 0.00 34.50 3.93
736 777 5.204292 TGTGTATCTTCTGAGTATCTGGCT 58.796 41.667 0.00 0.00 34.50 4.75
737 778 5.521906 TGTGTATCTTCTGAGTATCTGGC 57.478 43.478 0.00 0.00 34.50 4.85
738 779 7.340122 TCTTGTGTATCTTCTGAGTATCTGG 57.660 40.000 0.00 0.00 34.50 3.86
739 780 7.802720 CGATCTTGTGTATCTTCTGAGTATCTG 59.197 40.741 0.00 0.00 34.92 2.90
740 781 7.717436 TCGATCTTGTGTATCTTCTGAGTATCT 59.283 37.037 0.00 0.00 34.92 1.98
741 782 7.866729 TCGATCTTGTGTATCTTCTGAGTATC 58.133 38.462 0.00 0.00 0.00 2.24
742 783 7.809546 TCGATCTTGTGTATCTTCTGAGTAT 57.190 36.000 0.00 0.00 0.00 2.12
743 784 7.625828 TTCGATCTTGTGTATCTTCTGAGTA 57.374 36.000 0.00 0.00 0.00 2.59
752 793 9.612620 AACTTTGAATTTTCGATCTTGTGTATC 57.387 29.630 0.00 0.00 0.00 2.24
804 845 0.977395 GGAGGCTGGGAGCGTAATAT 59.023 55.000 0.00 0.00 43.62 1.28
805 846 1.119574 GGGAGGCTGGGAGCGTAATA 61.120 60.000 0.00 0.00 43.62 0.98
806 847 2.444256 GGGAGGCTGGGAGCGTAAT 61.444 63.158 0.00 0.00 43.62 1.89
807 848 3.081409 GGGAGGCTGGGAGCGTAA 61.081 66.667 0.00 0.00 43.62 3.18
808 849 4.392166 TGGGAGGCTGGGAGCGTA 62.392 66.667 0.00 0.00 43.62 4.42
865 906 0.179111 TCACGGCGATCCAGAACATC 60.179 55.000 16.62 0.00 0.00 3.06
889 933 6.052360 GGTGAGAGGAGAAGATGATTTTACC 58.948 44.000 0.00 0.00 0.00 2.85
937 987 3.637273 GTTCGCCCCCAGTCCAGT 61.637 66.667 0.00 0.00 0.00 4.00
1102 1152 2.579738 GAAGGCCTCCTCGTCCAC 59.420 66.667 5.23 0.00 30.89 4.02
1103 1153 3.068691 CGAAGGCCTCCTCGTCCA 61.069 66.667 17.11 0.00 30.89 4.02
1165 1215 2.006415 GGGTGGATGGATGGGGTGA 61.006 63.158 0.00 0.00 0.00 4.02
1186 1236 3.683802 AGCACAGAAATCAAGAAGGAGG 58.316 45.455 0.00 0.00 0.00 4.30
1231 1282 4.520492 CCACCATATGTCCTAATCAAAGCC 59.480 45.833 1.24 0.00 0.00 4.35
1288 1339 3.933332 CCTGCGAAAACTAACCCTAAGAG 59.067 47.826 0.00 0.00 0.00 2.85
1626 1677 4.313020 AAATCCTTGCATCCTTCTCAGT 57.687 40.909 0.00 0.00 0.00 3.41
1632 1683 8.275040 ACACTAACTATAAATCCTTGCATCCTT 58.725 33.333 0.00 0.00 0.00 3.36
1658 1709 5.639082 ACGCAATCGAGCATCAATTATCATA 59.361 36.000 0.00 0.00 39.41 2.15
1672 1723 3.122150 TGAGTGGAACGCAATCGAG 57.878 52.632 0.00 0.00 45.84 4.04
1682 1734 4.890158 TTCATTAGCTGACTGAGTGGAA 57.110 40.909 0.00 0.00 32.17 3.53
1708 1760 7.010160 TGAAGGGTCCAACAAATTAAAGAGAT 58.990 34.615 0.00 0.00 0.00 2.75
1774 1829 6.929625 CGATAGTTGGATCAGGACAATATCT 58.070 40.000 0.00 0.00 0.00 1.98
1821 1876 5.185454 TCATGAAACTAACCTATGGTGCTG 58.815 41.667 0.00 0.00 35.34 4.41
1988 2044 4.630069 GGAACAAGCTCTACGCAAAATCTA 59.370 41.667 0.00 0.00 42.61 1.98
1989 2045 3.437049 GGAACAAGCTCTACGCAAAATCT 59.563 43.478 0.00 0.00 42.61 2.40
1999 2055 6.148811 CCGTAAAATTTCAGGAACAAGCTCTA 59.851 38.462 0.00 0.00 0.00 2.43
2063 2152 4.773323 AGCAAGAAATTTGGCTAGTCAC 57.227 40.909 0.00 0.00 34.25 3.67
2122 2378 3.636153 ACAGTTTCCAGAGGCCTATTC 57.364 47.619 4.42 0.00 0.00 1.75
2130 2386 2.526304 TCCGTCAACAGTTTCCAGAG 57.474 50.000 0.00 0.00 0.00 3.35
2176 2432 1.741327 GCCCAGCCCAACATAGCATG 61.741 60.000 0.00 0.00 0.00 4.06
2396 2660 3.418047 TGAATGGCATGCAGAGGATATG 58.582 45.455 21.36 0.00 0.00 1.78
2453 2717 1.003223 GTTGTCAACCGACCCGAAAAG 60.003 52.381 4.21 0.00 41.85 2.27
2459 2723 1.666872 CCGAGTTGTCAACCGACCC 60.667 63.158 21.00 4.63 41.85 4.46
2696 2961 3.202706 GTCGGGAGCCAAATCGCC 61.203 66.667 0.00 0.00 0.00 5.54
2840 3339 0.538057 CAGTGCCCAATCACCACAGT 60.538 55.000 0.00 0.00 37.68 3.55
2844 3343 1.152589 TTGCAGTGCCCAATCACCA 60.153 52.632 13.72 0.00 37.68 4.17
2856 3355 2.111043 CTCCCCACACGTTGCAGT 59.889 61.111 0.00 0.00 0.00 4.40
2865 3372 1.585651 AAACAACACCCCTCCCCACA 61.586 55.000 0.00 0.00 0.00 4.17
2901 3408 3.378512 AGACTATGGATCAGGCACTCAA 58.621 45.455 0.00 0.00 34.60 3.02
2916 3423 0.111639 GAGCCGAGGAGGGAGACTAT 59.888 60.000 0.00 0.00 41.48 2.12
3007 3514 2.401766 CGGCATGGCTGGAGTCAAC 61.402 63.158 18.09 0.00 31.21 3.18
3048 3555 1.688311 CCTCCACCGAGAATCCACCTA 60.688 57.143 0.00 0.00 38.52 3.08
3115 3622 6.846988 AGATCCAAAGAAGAAGAAAAGGAGT 58.153 36.000 0.00 0.00 0.00 3.85
3248 3755 6.566079 TCAGAATTAGTTGATGACCCATCT 57.434 37.500 8.22 0.00 41.06 2.90
3349 3856 5.457799 GCATGAACATGAAAAATCAGATCGG 59.542 40.000 17.40 0.00 41.20 4.18
3533 4042 5.070001 TGGACACCTTTCTCTTTACCATTG 58.930 41.667 0.00 0.00 0.00 2.82
3715 4224 3.184382 TCCTAGGGATGCAATCGGATA 57.816 47.619 9.46 0.00 46.86 2.59
3716 4225 2.030027 TCCTAGGGATGCAATCGGAT 57.970 50.000 9.46 0.00 46.86 4.18
3721 4230 3.254960 ACTGCTATCCTAGGGATGCAAT 58.745 45.455 18.81 10.52 43.06 3.56
3730 4239 4.320567 CGACACATGGTACTGCTATCCTAG 60.321 50.000 0.00 0.00 0.00 3.02
3753 4262 6.459923 TGTGGTGTTTAAATAATTTCTGGCC 58.540 36.000 0.00 0.00 0.00 5.36
3764 4273 4.640789 TTTCGCACTGTGGTGTTTAAAT 57.359 36.364 10.21 0.00 44.65 1.40
3781 4290 8.948853 ATTGTTGTATGTGTTCAGTATTTTCG 57.051 30.769 0.00 0.00 0.00 3.46
3805 4315 6.818644 GGATTGACGCACCAGAATGTATATAT 59.181 38.462 0.00 0.00 0.00 0.86
3807 4317 4.997395 GGATTGACGCACCAGAATGTATAT 59.003 41.667 0.00 0.00 0.00 0.86
3846 4356 3.196685 ACAGGTGAGCTCTTTATCCTGAC 59.803 47.826 29.46 14.50 43.28 3.51
3910 4496 5.045869 TGGCCTAGTCTAGCAAGTTTAACAT 60.046 40.000 3.32 0.00 0.00 2.71
3938 4524 8.279970 TCAAAGATTTCATCGACCACATAATT 57.720 30.769 0.00 0.00 0.00 1.40
3940 4526 7.864108 ATCAAAGATTTCATCGACCACATAA 57.136 32.000 0.00 0.00 0.00 1.90
3990 4581 5.106948 ACAGAAACGCTCATTCAAGTACATG 60.107 40.000 0.00 0.00 0.00 3.21
4020 4611 7.797121 AAGATATGACCAAATCAAAACCCTT 57.203 32.000 0.00 0.00 41.93 3.95
4029 4620 6.202762 TGCGTGTGATAAGATATGACCAAATC 59.797 38.462 0.00 0.00 0.00 2.17
4445 5038 5.437060 ACATTAGCGGAAGATGTTACCAAT 58.563 37.500 0.00 0.00 30.22 3.16
4453 5046 6.910536 AAGTCTAAACATTAGCGGAAGATG 57.089 37.500 0.00 0.00 0.00 2.90
4636 5229 4.260497 CGGCACATATTCTGATGACACTTG 60.260 45.833 0.00 0.00 0.00 3.16
4768 5361 2.363306 TGGGGCATTCCATATGACAC 57.637 50.000 3.65 0.00 37.22 3.67
4834 5428 8.650714 GGAAACATGAGCAAAGAATAAATCAAC 58.349 33.333 0.00 0.00 0.00 3.18
5061 5670 6.213600 GCCTCCAGGATTCAAAGGATATACTA 59.786 42.308 0.00 0.00 37.39 1.82
5083 5692 6.767902 ACATAACTTATCATCAACAATCGCCT 59.232 34.615 0.00 0.00 0.00 5.52
5127 5736 1.813178 TCAGATCGAGCGTTCTGACTT 59.187 47.619 22.57 0.00 42.54 3.01
5242 5906 7.494625 ACAGAAGAAAATGAAGAGTCGTTTACA 59.505 33.333 0.00 0.00 41.23 2.41
5262 5926 7.089538 CAGATAGTGCATCCATACTACAGAAG 58.910 42.308 0.00 0.00 33.75 2.85
5263 5927 6.551227 ACAGATAGTGCATCCATACTACAGAA 59.449 38.462 0.00 0.00 33.75 3.02
5265 5929 6.338214 ACAGATAGTGCATCCATACTACAG 57.662 41.667 0.00 0.00 33.75 2.74
5309 5974 2.484594 GGTGAGAAGCTAAGGATCTGCC 60.485 54.545 0.00 0.00 0.00 4.85
5311 5976 3.450457 ACAGGTGAGAAGCTAAGGATCTG 59.550 47.826 0.00 0.00 0.00 2.90
5312 5977 3.718723 ACAGGTGAGAAGCTAAGGATCT 58.281 45.455 0.00 0.00 0.00 2.75
5313 5978 4.081420 TCAACAGGTGAGAAGCTAAGGATC 60.081 45.833 0.00 0.00 0.00 3.36
5314 5979 3.840666 TCAACAGGTGAGAAGCTAAGGAT 59.159 43.478 0.00 0.00 0.00 3.24
5315 5980 3.239449 TCAACAGGTGAGAAGCTAAGGA 58.761 45.455 0.00 0.00 0.00 3.36
5316 5981 3.685139 TCAACAGGTGAGAAGCTAAGG 57.315 47.619 0.00 0.00 0.00 2.69
5317 5982 4.187694 GGATCAACAGGTGAGAAGCTAAG 58.812 47.826 0.00 0.00 40.43 2.18
5342 6007 9.527157 TCCTTGTAGGACAAATAAAATCATGAA 57.473 29.630 0.00 0.00 40.06 2.57
5358 6025 5.010617 GCCAATTTCTTTGTTCCTTGTAGGA 59.989 40.000 0.00 0.00 36.39 2.94
5400 6071 5.957771 AACTGAACTCCCTAGCATGATAA 57.042 39.130 0.00 0.00 0.00 1.75
5401 6072 5.957771 AAACTGAACTCCCTAGCATGATA 57.042 39.130 0.00 0.00 0.00 2.15
5420 6091 1.997606 GCATGATGCAAGGCTCAAAAC 59.002 47.619 13.36 0.00 44.26 2.43
5474 6145 4.082026 GCATTAGGCATCAAGTTGAAACCT 60.082 41.667 25.16 25.16 43.97 3.50
5514 6185 0.467290 TCCCCTCCAGTTTGCACAAC 60.467 55.000 0.00 0.00 0.00 3.32
5527 6198 2.686405 AGTTTGTCACGTTTTTCCCCTC 59.314 45.455 0.00 0.00 0.00 4.30
5533 6206 7.414814 ACAATGAAAAGTTTGTCACGTTTTT 57.585 28.000 0.00 0.00 37.22 1.94
5581 6257 2.039418 TGCGCCTACTGATATTGGACT 58.961 47.619 4.18 0.00 0.00 3.85
5586 6262 1.432514 CGCATGCGCCTACTGATATT 58.567 50.000 29.09 0.00 33.11 1.28
5612 6288 5.951163 CGAATATTCGTGTGTGTGTTTTC 57.049 39.130 26.11 0.00 45.09 2.29
5626 6302 1.132640 GATGGCGCGGCGAATATTC 59.867 57.895 28.54 13.05 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.