Multiple sequence alignment - TraesCS5A01G336100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G336100 chr5A 100.000 2558 0 0 1 2558 545072760 545075317 0.000000e+00 4724.0
1 TraesCS5A01G336100 chr5A 82.920 1048 94 40 816 1837 545058604 545059592 0.000000e+00 865.0
2 TraesCS5A01G336100 chr5A 85.986 421 31 16 1840 2242 545059565 545059975 2.350000e-115 425.0
3 TraesCS5A01G336100 chr5A 89.899 99 8 2 648 744 545057748 545057846 2.670000e-25 126.0
4 TraesCS5A01G336100 chr5B 92.213 2119 94 25 469 2558 518481026 518483102 0.000000e+00 2933.0
5 TraesCS5A01G336100 chr5B 81.481 1107 94 43 755 1837 518472332 518473351 0.000000e+00 806.0
6 TraesCS5A01G336100 chr5B 85.808 458 34 14 1840 2277 310664241 310663795 8.340000e-125 457.0
7 TraesCS5A01G336100 chr5B 83.002 453 48 16 1387 1837 310664639 310664214 1.440000e-102 383.0
8 TraesCS5A01G336100 chr5D 90.132 1287 88 20 648 1903 429289158 429290436 0.000000e+00 1637.0
9 TraesCS5A01G336100 chr5D 96.266 616 18 3 1948 2558 429290435 429291050 0.000000e+00 1005.0
10 TraesCS5A01G336100 chr5D 80.257 623 66 24 1048 1650 423064651 423064066 1.420000e-112 416.0
11 TraesCS5A01G336100 chr5D 85.511 421 31 13 1877 2277 423009287 423008877 1.830000e-111 412.0
12 TraesCS5A01G336100 chr7D 81.215 708 77 28 1889 2557 2038038 2037348 1.050000e-143 520.0
13 TraesCS5A01G336100 chr7D 78.656 848 112 35 802 1607 2039056 2038236 1.370000e-137 499.0
14 TraesCS5A01G336100 chrUn 78.886 862 106 44 802 1609 81434084 81434923 4.880000e-142 514.0
15 TraesCS5A01G336100 chrUn 85.526 456 31 15 1840 2273 423143847 423143405 6.490000e-121 444.0
16 TraesCS5A01G336100 chrUn 81.973 527 50 22 2055 2557 81435328 81435833 3.060000e-109 405.0
17 TraesCS5A01G336100 chrUn 81.973 527 50 22 2055 2557 336021890 336022395 3.060000e-109 405.0
18 TraesCS5A01G336100 chr1A 79.209 784 102 25 1048 1818 291729800 291730535 2.960000e-134 488.0
19 TraesCS5A01G336100 chr1A 79.082 784 103 25 1048 1818 292013295 292014030 1.380000e-132 483.0
20 TraesCS5A01G336100 chr1A 85.476 420 30 14 1874 2273 291730532 291730940 2.370000e-110 409.0
21 TraesCS5A01G336100 chr1A 85.273 421 30 14 1874 2273 292014027 292014436 3.060000e-109 405.0
22 TraesCS5A01G336100 chr1A 85.132 417 30 15 1877 2273 293321464 293321060 5.130000e-107 398.0
23 TraesCS5A01G336100 chr1A 90.083 121 11 1 325 445 498178584 498178703 3.410000e-34 156.0
24 TraesCS5A01G336100 chr4A 78.626 786 108 33 802 1550 742608489 742607727 1.390000e-127 466.0
25 TraesCS5A01G336100 chr4A 79.632 707 80 42 1889 2556 742607434 742606753 1.400000e-122 449.0
26 TraesCS5A01G336100 chr4A 78.894 597 74 36 880 1453 742652295 742651728 8.700000e-95 357.0
27 TraesCS5A01G336100 chr4A 91.228 114 10 0 337 450 343923584 343923697 3.410000e-34 156.0
28 TraesCS5A01G336100 chr4A 97.368 38 1 0 2328 2365 742651143 742651106 5.910000e-07 65.8
29 TraesCS5A01G336100 chr4D 85.777 457 31 14 1840 2275 417844085 417843642 1.080000e-123 453.0
30 TraesCS5A01G336100 chr4D 89.916 119 11 1 327 444 211385319 211385437 4.410000e-33 152.0
31 TraesCS5A01G336100 chr6D 85.558 457 30 16 1840 2273 429327323 429326880 1.810000e-121 446.0
32 TraesCS5A01G336100 chr6D 78.545 536 61 25 1307 1839 217173268 217172784 1.150000e-78 303.0
33 TraesCS5A01G336100 chr6D 90.756 119 11 0 337 455 7489742 7489860 2.630000e-35 159.0
34 TraesCS5A01G336100 chr6D 90.756 119 11 0 337 455 7493667 7493785 2.630000e-35 159.0
35 TraesCS5A01G336100 chr6D 89.683 126 11 1 330 455 7499077 7499200 2.630000e-35 159.0
36 TraesCS5A01G336100 chr1D 85.558 457 30 15 1840 2273 26172242 26172685 1.810000e-121 446.0
37 TraesCS5A01G336100 chr1D 85.526 456 31 15 1840 2273 319537237 319536795 6.490000e-121 444.0
38 TraesCS5A01G336100 chr1D 85.526 456 30 16 1840 2273 458737281 458737722 6.490000e-121 444.0
39 TraesCS5A01G336100 chr1D 85.153 458 30 20 1840 2273 319556448 319556005 3.910000e-118 435.0
40 TraesCS5A01G336100 chr2A 85.238 420 31 14 1874 2273 557968560 557968968 1.100000e-108 403.0
41 TraesCS5A01G336100 chr2A 82.150 493 63 13 1347 1837 507703352 507702883 1.430000e-107 399.0
42 TraesCS5A01G336100 chr2A 83.444 453 42 18 1301 1750 103209328 103209750 8.580000e-105 390.0
43 TraesCS5A01G336100 chr2A 84.412 417 34 14 1877 2273 332987139 332986734 5.160000e-102 381.0
44 TraesCS5A01G336100 chr2A 80.784 510 62 19 1048 1545 557967857 557968342 1.450000e-97 366.0
45 TraesCS5A01G336100 chr2A 80.156 514 74 13 1048 1548 332987855 332987357 2.420000e-95 359.0
46 TraesCS5A01G336100 chr2A 81.065 338 30 21 1504 1837 32006723 32006416 3.290000e-59 239.0
47 TraesCS5A01G336100 chr2A 90.000 120 11 1 329 447 468295292 468295411 1.230000e-33 154.0
48 TraesCS5A01G336100 chr3A 83.223 453 43 18 1301 1750 459075137 459074715 3.990000e-103 385.0
49 TraesCS5A01G336100 chr3A 88.525 122 13 1 331 451 661931125 661931246 2.050000e-31 147.0
50 TraesCS5A01G336100 chr6B 82.873 362 45 12 1141 1492 93904257 93903903 2.470000e-80 309.0
51 TraesCS5A01G336100 chr6A 91.964 112 9 0 334 445 607405354 607405465 9.470000e-35 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G336100 chr5A 545072760 545075317 2557 False 4724.0 4724 100.000000 1 2558 1 chr5A.!!$F1 2557
1 TraesCS5A01G336100 chr5A 545057748 545059975 2227 False 472.0 865 86.268333 648 2242 3 chr5A.!!$F2 1594
2 TraesCS5A01G336100 chr5B 518481026 518483102 2076 False 2933.0 2933 92.213000 469 2558 1 chr5B.!!$F2 2089
3 TraesCS5A01G336100 chr5B 518472332 518473351 1019 False 806.0 806 81.481000 755 1837 1 chr5B.!!$F1 1082
4 TraesCS5A01G336100 chr5B 310663795 310664639 844 True 420.0 457 84.405000 1387 2277 2 chr5B.!!$R1 890
5 TraesCS5A01G336100 chr5D 429289158 429291050 1892 False 1321.0 1637 93.199000 648 2558 2 chr5D.!!$F1 1910
6 TraesCS5A01G336100 chr5D 423064066 423064651 585 True 416.0 416 80.257000 1048 1650 1 chr5D.!!$R2 602
7 TraesCS5A01G336100 chr7D 2037348 2039056 1708 True 509.5 520 79.935500 802 2557 2 chr7D.!!$R1 1755
8 TraesCS5A01G336100 chrUn 81434084 81435833 1749 False 459.5 514 80.429500 802 2557 2 chrUn.!!$F2 1755
9 TraesCS5A01G336100 chrUn 336021890 336022395 505 False 405.0 405 81.973000 2055 2557 1 chrUn.!!$F1 502
10 TraesCS5A01G336100 chr1A 291729800 291730940 1140 False 448.5 488 82.342500 1048 2273 2 chr1A.!!$F2 1225
11 TraesCS5A01G336100 chr1A 292013295 292014436 1141 False 444.0 483 82.177500 1048 2273 2 chr1A.!!$F3 1225
12 TraesCS5A01G336100 chr4A 742606753 742608489 1736 True 457.5 466 79.129000 802 2556 2 chr4A.!!$R1 1754
13 TraesCS5A01G336100 chr4A 742651106 742652295 1189 True 211.4 357 88.131000 880 2365 2 chr4A.!!$R2 1485
14 TraesCS5A01G336100 chr2A 557967857 557968968 1111 False 384.5 403 83.011000 1048 2273 2 chr2A.!!$F3 1225
15 TraesCS5A01G336100 chr2A 332986734 332987855 1121 True 370.0 381 82.284000 1048 2273 2 chr2A.!!$R3 1225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.038159 GAGACTTGAGTGACCCGTGG 60.038 60.0 0.0 0.0 0.0 4.94 F
265 266 0.038159 ACTGTCTCCACGTTAGCTGC 60.038 55.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1072 1806 1.589993 CGTCGGCGATGCAGAAGAT 60.590 57.895 17.01 0.0 41.33 2.40 R
1716 2624 3.203487 TCCCCACTTCCTTTTGTTACAGT 59.797 43.478 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.010575 AGTCCGCCACTCTCAGAG 57.989 61.111 0.00 0.00 35.52 3.35
31 32 1.680651 AGTCCGCCACTCTCAGAGG 60.681 63.158 6.64 0.00 33.35 3.69
32 33 1.979693 GTCCGCCACTCTCAGAGGT 60.980 63.158 6.64 0.00 33.35 3.85
33 34 1.979155 TCCGCCACTCTCAGAGGTG 60.979 63.158 6.64 10.57 36.42 4.00
34 35 2.125753 CGCCACTCTCAGAGGTGC 60.126 66.667 6.64 7.12 30.19 5.01
35 36 2.935740 CGCCACTCTCAGAGGTGCA 61.936 63.158 15.60 0.00 30.19 4.57
36 37 1.372683 GCCACTCTCAGAGGTGCAA 59.627 57.895 6.64 0.00 33.35 4.08
37 38 0.952984 GCCACTCTCAGAGGTGCAAC 60.953 60.000 6.64 0.00 33.35 4.17
38 39 0.668706 CCACTCTCAGAGGTGCAACG 60.669 60.000 6.64 0.00 38.12 4.10
39 40 1.005630 ACTCTCAGAGGTGCAACGC 60.006 57.895 6.64 0.00 38.12 4.84
40 41 1.739562 CTCTCAGAGGTGCAACGCC 60.740 63.158 0.31 0.00 38.12 5.68
41 42 2.743928 CTCAGAGGTGCAACGCCC 60.744 66.667 0.31 0.00 38.12 6.13
42 43 4.329545 TCAGAGGTGCAACGCCCC 62.330 66.667 0.31 0.00 38.12 5.80
43 44 4.641645 CAGAGGTGCAACGCCCCA 62.642 66.667 0.31 0.00 38.12 4.96
44 45 4.643387 AGAGGTGCAACGCCCCAC 62.643 66.667 0.31 0.00 38.12 4.61
57 58 4.351054 CCCACCCTGCACCCACTC 62.351 72.222 0.00 0.00 0.00 3.51
58 59 4.351054 CCACCCTGCACCCACTCC 62.351 72.222 0.00 0.00 0.00 3.85
59 60 3.252284 CACCCTGCACCCACTCCT 61.252 66.667 0.00 0.00 0.00 3.69
60 61 1.918293 CACCCTGCACCCACTCCTA 60.918 63.158 0.00 0.00 0.00 2.94
61 62 1.082954 ACCCTGCACCCACTCCTAT 59.917 57.895 0.00 0.00 0.00 2.57
62 63 1.274703 ACCCTGCACCCACTCCTATG 61.275 60.000 0.00 0.00 0.00 2.23
63 64 1.528824 CCTGCACCCACTCCTATGG 59.471 63.158 0.00 0.00 39.71 2.74
64 65 0.982852 CCTGCACCCACTCCTATGGA 60.983 60.000 0.00 0.00 43.02 3.41
76 77 3.924144 CTCCTATGGAGCAACATCTAGC 58.076 50.000 0.27 0.00 43.29 3.42
77 78 2.297315 TCCTATGGAGCAACATCTAGCG 59.703 50.000 0.00 0.00 35.48 4.26
78 79 2.064762 CTATGGAGCAACATCTAGCGC 58.935 52.381 0.00 0.00 35.48 5.92
79 80 3.724494 GGAGCAACATCTAGCGCC 58.276 61.111 2.29 0.00 43.23 6.53
80 81 1.889573 GGAGCAACATCTAGCGCCC 60.890 63.158 2.29 0.00 43.75 6.13
81 82 1.889573 GAGCAACATCTAGCGCCCC 60.890 63.158 2.29 0.00 35.48 5.80
82 83 3.272334 GCAACATCTAGCGCCCCG 61.272 66.667 2.29 0.00 0.00 5.73
83 84 2.186903 CAACATCTAGCGCCCCGT 59.813 61.111 2.29 0.00 0.00 5.28
84 85 1.883084 CAACATCTAGCGCCCCGTC 60.883 63.158 2.29 0.00 0.00 4.79
85 86 2.355986 AACATCTAGCGCCCCGTCA 61.356 57.895 2.29 0.00 0.00 4.35
86 87 2.028190 CATCTAGCGCCCCGTCAG 59.972 66.667 2.29 0.00 0.00 3.51
87 88 3.227276 ATCTAGCGCCCCGTCAGG 61.227 66.667 2.29 0.00 37.24 3.86
88 89 4.753662 TCTAGCGCCCCGTCAGGT 62.754 66.667 2.29 0.00 35.12 4.00
89 90 4.208686 CTAGCGCCCCGTCAGGTC 62.209 72.222 2.29 0.00 35.12 3.85
90 91 4.753662 TAGCGCCCCGTCAGGTCT 62.754 66.667 2.29 0.00 35.12 3.85
94 95 4.083862 GCCCCGTCAGGTCTGGTC 62.084 72.222 0.00 0.00 35.12 4.02
95 96 3.391382 CCCCGTCAGGTCTGGTCC 61.391 72.222 0.00 0.00 35.12 4.46
96 97 2.283966 CCCGTCAGGTCTGGTCCT 60.284 66.667 0.00 0.00 38.51 3.85
97 98 2.352032 CCCGTCAGGTCTGGTCCTC 61.352 68.421 0.00 0.00 35.37 3.71
98 99 2.701780 CCGTCAGGTCTGGTCCTCG 61.702 68.421 0.00 0.00 35.37 4.63
99 100 1.674651 CGTCAGGTCTGGTCCTCGA 60.675 63.158 0.00 0.00 35.37 4.04
100 101 1.649390 CGTCAGGTCTGGTCCTCGAG 61.649 65.000 5.13 5.13 35.37 4.04
101 102 1.679305 TCAGGTCTGGTCCTCGAGC 60.679 63.158 6.99 0.00 35.37 5.03
102 103 1.680651 CAGGTCTGGTCCTCGAGCT 60.681 63.158 6.99 7.40 38.42 4.09
103 104 1.379309 AGGTCTGGTCCTCGAGCTC 60.379 63.158 6.99 2.73 33.04 4.09
104 105 1.379309 GGTCTGGTCCTCGAGCTCT 60.379 63.158 12.85 0.00 0.00 4.09
105 106 1.381165 GGTCTGGTCCTCGAGCTCTC 61.381 65.000 12.85 0.00 0.00 3.20
106 107 0.678366 GTCTGGTCCTCGAGCTCTCA 60.678 60.000 12.85 1.53 0.00 3.27
107 108 0.038310 TCTGGTCCTCGAGCTCTCAA 59.962 55.000 12.85 0.00 0.00 3.02
108 109 0.172352 CTGGTCCTCGAGCTCTCAAC 59.828 60.000 12.85 4.63 0.00 3.18
109 110 1.137825 GGTCCTCGAGCTCTCAACG 59.862 63.158 12.85 0.00 0.00 4.10
110 111 1.137825 GTCCTCGAGCTCTCAACGG 59.862 63.158 12.85 4.85 0.00 4.44
111 112 1.002502 TCCTCGAGCTCTCAACGGA 60.003 57.895 12.85 7.14 0.00 4.69
112 113 1.027255 TCCTCGAGCTCTCAACGGAG 61.027 60.000 12.85 9.43 42.80 4.63
113 114 1.431440 CTCGAGCTCTCAACGGAGG 59.569 63.158 12.85 0.00 41.69 4.30
114 115 2.202676 CGAGCTCTCAACGGAGGC 60.203 66.667 12.85 0.00 41.69 4.70
115 116 2.973899 GAGCTCTCAACGGAGGCA 59.026 61.111 6.43 0.00 41.69 4.75
116 117 1.446966 GAGCTCTCAACGGAGGCAC 60.447 63.158 6.43 0.00 41.69 5.01
117 118 2.811317 GCTCTCAACGGAGGCACG 60.811 66.667 0.00 0.00 41.69 5.34
118 119 2.962569 CTCTCAACGGAGGCACGA 59.037 61.111 8.58 0.00 41.69 4.35
119 120 1.153939 CTCTCAACGGAGGCACGAG 60.154 63.158 8.58 1.41 41.69 4.18
120 121 1.587043 CTCTCAACGGAGGCACGAGA 61.587 60.000 8.58 5.30 41.69 4.04
121 122 1.176619 TCTCAACGGAGGCACGAGAA 61.177 55.000 8.58 0.00 41.69 2.87
122 123 1.006571 TCAACGGAGGCACGAGAAC 60.007 57.895 8.58 0.00 37.61 3.01
123 124 1.300620 CAACGGAGGCACGAGAACA 60.301 57.895 8.58 0.00 37.61 3.18
124 125 0.670546 CAACGGAGGCACGAGAACAT 60.671 55.000 8.58 0.00 37.61 2.71
125 126 0.670546 AACGGAGGCACGAGAACATG 60.671 55.000 8.58 0.00 37.61 3.21
126 127 1.215382 CGGAGGCACGAGAACATGA 59.785 57.895 0.00 0.00 35.47 3.07
127 128 0.179100 CGGAGGCACGAGAACATGAT 60.179 55.000 0.00 0.00 35.47 2.45
128 129 1.067060 CGGAGGCACGAGAACATGATA 59.933 52.381 0.00 0.00 35.47 2.15
129 130 2.288457 CGGAGGCACGAGAACATGATAT 60.288 50.000 0.00 0.00 35.47 1.63
130 131 3.321497 GGAGGCACGAGAACATGATATC 58.679 50.000 0.00 0.00 0.00 1.63
131 132 3.243873 GGAGGCACGAGAACATGATATCA 60.244 47.826 8.10 8.10 0.00 2.15
132 133 3.722147 AGGCACGAGAACATGATATCAC 58.278 45.455 7.78 0.00 0.00 3.06
133 134 2.802816 GGCACGAGAACATGATATCACC 59.197 50.000 7.78 0.00 0.00 4.02
134 135 2.802816 GCACGAGAACATGATATCACCC 59.197 50.000 7.78 0.00 0.00 4.61
135 136 3.493350 GCACGAGAACATGATATCACCCT 60.493 47.826 7.78 2.79 0.00 4.34
136 137 4.053983 CACGAGAACATGATATCACCCTG 58.946 47.826 7.78 5.39 0.00 4.45
137 138 3.706594 ACGAGAACATGATATCACCCTGT 59.293 43.478 7.78 6.08 0.00 4.00
138 139 4.162320 ACGAGAACATGATATCACCCTGTT 59.838 41.667 18.61 18.61 33.02 3.16
139 140 4.509230 CGAGAACATGATATCACCCTGTTG 59.491 45.833 21.97 12.44 30.63 3.33
140 141 4.785301 AGAACATGATATCACCCTGTTGG 58.215 43.478 21.97 3.85 41.37 3.77
141 142 2.936202 ACATGATATCACCCTGTTGGC 58.064 47.619 7.78 0.00 37.83 4.52
142 143 2.511218 ACATGATATCACCCTGTTGGCT 59.489 45.455 7.78 0.00 37.83 4.75
143 144 3.716353 ACATGATATCACCCTGTTGGCTA 59.284 43.478 7.78 0.00 37.83 3.93
144 145 4.202398 ACATGATATCACCCTGTTGGCTAG 60.202 45.833 7.78 0.00 37.83 3.42
145 146 2.705658 TGATATCACCCTGTTGGCTAGG 59.294 50.000 0.00 0.00 37.83 3.02
146 147 0.837272 TATCACCCTGTTGGCTAGGC 59.163 55.000 9.85 9.85 37.83 3.93
165 166 3.020627 CGCAAGGAGCATGCTAGC 58.979 61.111 22.74 20.09 46.13 3.42
174 175 0.397187 AGCATGCTAGCTCATCCAGG 59.603 55.000 21.21 0.00 42.18 4.45
175 176 0.108207 GCATGCTAGCTCATCCAGGT 59.892 55.000 17.23 0.00 36.55 4.00
176 177 1.476471 GCATGCTAGCTCATCCAGGTT 60.476 52.381 17.23 0.00 33.71 3.50
177 178 2.492012 CATGCTAGCTCATCCAGGTTC 58.508 52.381 17.23 0.00 33.71 3.62
178 179 0.461548 TGCTAGCTCATCCAGGTTCG 59.538 55.000 17.23 0.00 33.71 3.95
179 180 0.747255 GCTAGCTCATCCAGGTTCGA 59.253 55.000 7.70 0.00 33.71 3.71
180 181 1.269517 GCTAGCTCATCCAGGTTCGAG 60.270 57.143 7.70 0.00 33.71 4.04
181 182 2.302260 CTAGCTCATCCAGGTTCGAGA 58.698 52.381 0.00 0.00 33.71 4.04
182 183 0.820871 AGCTCATCCAGGTTCGAGAC 59.179 55.000 6.69 0.00 0.00 3.36
183 184 0.820871 GCTCATCCAGGTTCGAGACT 59.179 55.000 6.69 0.00 0.00 3.24
184 185 1.205893 GCTCATCCAGGTTCGAGACTT 59.794 52.381 6.69 0.00 0.00 3.01
185 186 2.886081 CTCATCCAGGTTCGAGACTTG 58.114 52.381 0.00 0.00 35.27 3.16
186 187 2.493675 CTCATCCAGGTTCGAGACTTGA 59.506 50.000 10.07 3.85 37.53 3.02
187 188 2.493675 TCATCCAGGTTCGAGACTTGAG 59.506 50.000 10.07 3.36 37.53 3.02
188 189 1.996798 TCCAGGTTCGAGACTTGAGT 58.003 50.000 10.07 0.00 37.53 3.41
189 190 1.613925 TCCAGGTTCGAGACTTGAGTG 59.386 52.381 10.07 0.00 37.53 3.51
190 191 1.613925 CCAGGTTCGAGACTTGAGTGA 59.386 52.381 10.07 0.00 37.53 3.41
191 192 2.608261 CCAGGTTCGAGACTTGAGTGAC 60.608 54.545 10.07 0.00 37.53 3.67
192 193 1.614413 AGGTTCGAGACTTGAGTGACC 59.386 52.381 4.42 4.42 0.00 4.02
193 194 1.336980 GGTTCGAGACTTGAGTGACCC 60.337 57.143 1.74 0.00 0.00 4.46
194 195 0.596577 TTCGAGACTTGAGTGACCCG 59.403 55.000 0.00 0.00 0.00 5.28
195 196 0.536687 TCGAGACTTGAGTGACCCGT 60.537 55.000 0.00 0.00 0.00 5.28
196 197 0.387367 CGAGACTTGAGTGACCCGTG 60.387 60.000 0.00 0.00 0.00 4.94
197 198 0.038159 GAGACTTGAGTGACCCGTGG 60.038 60.000 0.00 0.00 0.00 4.94
198 199 0.759436 AGACTTGAGTGACCCGTGGT 60.759 55.000 0.00 0.00 39.44 4.16
199 200 0.600255 GACTTGAGTGACCCGTGGTG 60.600 60.000 0.00 0.00 35.25 4.17
200 201 1.335132 ACTTGAGTGACCCGTGGTGT 61.335 55.000 0.00 0.00 35.25 4.16
201 202 0.179056 CTTGAGTGACCCGTGGTGTT 60.179 55.000 0.00 0.00 35.25 3.32
202 203 0.253610 TTGAGTGACCCGTGGTGTTT 59.746 50.000 0.00 0.00 35.25 2.83
203 204 1.121378 TGAGTGACCCGTGGTGTTTA 58.879 50.000 0.00 0.00 35.25 2.01
204 205 1.069513 TGAGTGACCCGTGGTGTTTAG 59.930 52.381 0.00 0.00 35.25 1.85
205 206 1.342174 GAGTGACCCGTGGTGTTTAGA 59.658 52.381 0.00 0.00 35.25 2.10
206 207 1.343465 AGTGACCCGTGGTGTTTAGAG 59.657 52.381 0.00 0.00 35.25 2.43
207 208 1.069668 GTGACCCGTGGTGTTTAGAGT 59.930 52.381 0.00 0.00 35.25 3.24
208 209 1.764134 TGACCCGTGGTGTTTAGAGTT 59.236 47.619 0.00 0.00 35.25 3.01
209 210 2.171027 TGACCCGTGGTGTTTAGAGTTT 59.829 45.455 0.00 0.00 35.25 2.66
210 211 2.804527 GACCCGTGGTGTTTAGAGTTTC 59.195 50.000 0.00 0.00 35.25 2.78
211 212 2.436911 ACCCGTGGTGTTTAGAGTTTCT 59.563 45.455 0.00 0.00 32.98 2.52
212 213 3.118149 ACCCGTGGTGTTTAGAGTTTCTT 60.118 43.478 0.00 0.00 32.98 2.52
213 214 3.497262 CCCGTGGTGTTTAGAGTTTCTTC 59.503 47.826 0.00 0.00 0.00 2.87
214 215 4.377897 CCGTGGTGTTTAGAGTTTCTTCT 58.622 43.478 0.00 0.00 0.00 2.85
215 216 5.510179 CCCGTGGTGTTTAGAGTTTCTTCTA 60.510 44.000 0.00 0.00 0.00 2.10
216 217 5.404667 CCGTGGTGTTTAGAGTTTCTTCTAC 59.595 44.000 0.00 0.00 29.67 2.59
217 218 5.981315 CGTGGTGTTTAGAGTTTCTTCTACA 59.019 40.000 0.00 0.00 29.67 2.74
218 219 6.477688 CGTGGTGTTTAGAGTTTCTTCTACAA 59.522 38.462 0.00 0.00 29.67 2.41
219 220 7.010738 CGTGGTGTTTAGAGTTTCTTCTACAAA 59.989 37.037 0.00 0.00 29.67 2.83
220 221 8.671028 GTGGTGTTTAGAGTTTCTTCTACAAAA 58.329 33.333 0.00 0.00 29.67 2.44
221 222 9.233649 TGGTGTTTAGAGTTTCTTCTACAAAAA 57.766 29.630 0.00 0.00 29.67 1.94
235 236 9.349713 TCTTCTACAAAAATATGGAACTGTTGT 57.650 29.630 0.00 0.00 0.00 3.32
236 237 9.398170 CTTCTACAAAAATATGGAACTGTTGTG 57.602 33.333 0.00 0.00 0.00 3.33
237 238 7.367285 TCTACAAAAATATGGAACTGTTGTGC 58.633 34.615 0.00 0.00 0.00 4.57
238 239 4.981674 ACAAAAATATGGAACTGTTGTGCG 59.018 37.500 0.00 0.00 0.00 5.34
239 240 3.848272 AAATATGGAACTGTTGTGCGG 57.152 42.857 0.00 0.00 0.00 5.69
240 241 2.779755 ATATGGAACTGTTGTGCGGA 57.220 45.000 0.00 0.00 0.00 5.54
241 242 1.803334 TATGGAACTGTTGTGCGGAC 58.197 50.000 0.00 0.00 0.00 4.79
242 243 1.227999 ATGGAACTGTTGTGCGGACG 61.228 55.000 1.60 0.00 0.00 4.79
243 244 1.593209 GGAACTGTTGTGCGGACGA 60.593 57.895 1.60 0.00 0.00 4.20
244 245 1.563173 GAACTGTTGTGCGGACGAC 59.437 57.895 19.69 19.69 37.04 4.34
255 256 3.664495 GGACGACGACTGTCTCCA 58.336 61.111 0.00 0.00 43.21 3.86
256 257 1.209640 GGACGACGACTGTCTCCAC 59.790 63.158 0.00 0.00 43.21 4.02
257 258 1.154450 GACGACGACTGTCTCCACG 60.154 63.158 0.00 8.36 43.21 4.94
258 259 1.839598 GACGACGACTGTCTCCACGT 61.840 60.000 0.00 11.18 43.21 4.49
259 260 1.281960 CGACGACTGTCTCCACGTT 59.718 57.895 6.21 0.00 43.21 3.99
260 261 0.514255 CGACGACTGTCTCCACGTTA 59.486 55.000 6.21 0.00 43.21 3.18
261 262 1.463693 CGACGACTGTCTCCACGTTAG 60.464 57.143 6.21 0.00 43.21 2.34
262 263 0.240411 ACGACTGTCTCCACGTTAGC 59.760 55.000 6.21 0.00 35.47 3.09
263 264 0.522180 CGACTGTCTCCACGTTAGCT 59.478 55.000 6.21 0.00 0.00 3.32
264 265 1.729472 CGACTGTCTCCACGTTAGCTG 60.729 57.143 6.21 0.00 0.00 4.24
265 266 0.038159 ACTGTCTCCACGTTAGCTGC 60.038 55.000 0.00 0.00 0.00 5.25
266 267 0.038251 CTGTCTCCACGTTAGCTGCA 60.038 55.000 1.02 0.00 0.00 4.41
267 268 0.319555 TGTCTCCACGTTAGCTGCAC 60.320 55.000 1.02 0.00 0.00 4.57
268 269 1.080772 TCTCCACGTTAGCTGCACG 60.081 57.895 16.35 16.35 43.52 5.34
269 270 1.080772 CTCCACGTTAGCTGCACGA 60.081 57.895 22.79 4.18 40.20 4.35
270 271 0.458543 CTCCACGTTAGCTGCACGAT 60.459 55.000 22.79 7.98 40.20 3.73
271 272 0.735978 TCCACGTTAGCTGCACGATG 60.736 55.000 22.79 16.64 40.20 3.84
272 273 1.695893 CCACGTTAGCTGCACGATGG 61.696 60.000 22.79 20.22 40.20 3.51
273 274 1.014044 CACGTTAGCTGCACGATGGT 61.014 55.000 22.79 2.08 40.20 3.55
274 275 0.528924 ACGTTAGCTGCACGATGGTA 59.471 50.000 22.79 0.00 40.20 3.25
275 276 1.067425 ACGTTAGCTGCACGATGGTAA 60.067 47.619 22.79 0.00 40.20 2.85
276 277 2.201732 CGTTAGCTGCACGATGGTAAT 58.798 47.619 13.52 0.00 40.20 1.89
277 278 2.218759 CGTTAGCTGCACGATGGTAATC 59.781 50.000 13.52 0.00 40.20 1.75
278 279 2.526304 TAGCTGCACGATGGTAATCC 57.474 50.000 1.02 0.00 0.00 3.01
282 283 0.463654 TGCACGATGGTAATCCAGCC 60.464 55.000 0.00 0.00 46.23 4.85
283 284 1.498865 GCACGATGGTAATCCAGCCG 61.499 60.000 0.00 9.15 46.23 5.52
284 285 2.208527 ACGATGGTAATCCAGCCGT 58.791 52.632 10.12 10.12 46.23 5.68
285 286 0.539986 ACGATGGTAATCCAGCCGTT 59.460 50.000 10.12 0.00 46.57 4.44
286 287 1.065709 ACGATGGTAATCCAGCCGTTT 60.066 47.619 10.12 0.00 46.57 3.60
287 288 1.330521 CGATGGTAATCCAGCCGTTTG 59.669 52.381 0.00 0.00 46.23 2.93
288 289 2.562125 TGGTAATCCAGCCGTTTGC 58.438 52.632 0.00 0.00 39.03 3.68
298 299 3.560826 GCCGTTTGCTGCACTTTAA 57.439 47.368 0.00 0.00 36.87 1.52
299 300 2.064573 GCCGTTTGCTGCACTTTAAT 57.935 45.000 0.00 0.00 36.87 1.40
300 301 3.210358 GCCGTTTGCTGCACTTTAATA 57.790 42.857 0.00 0.00 36.87 0.98
301 302 2.914838 GCCGTTTGCTGCACTTTAATAC 59.085 45.455 0.00 0.00 36.87 1.89
302 303 3.610585 GCCGTTTGCTGCACTTTAATACA 60.611 43.478 0.00 0.00 36.87 2.29
303 304 4.732784 CCGTTTGCTGCACTTTAATACAT 58.267 39.130 0.00 0.00 0.00 2.29
304 305 4.558470 CCGTTTGCTGCACTTTAATACATG 59.442 41.667 0.00 0.00 0.00 3.21
305 306 4.030529 CGTTTGCTGCACTTTAATACATGC 59.969 41.667 0.00 0.00 38.59 4.06
306 307 4.780275 TTGCTGCACTTTAATACATGCA 57.220 36.364 0.00 0.00 45.45 3.96
307 308 4.987408 TGCTGCACTTTAATACATGCAT 57.013 36.364 0.00 0.00 46.35 3.96
308 309 4.674475 TGCTGCACTTTAATACATGCATG 58.326 39.130 25.09 25.09 46.35 4.06
309 310 4.046462 GCTGCACTTTAATACATGCATGG 58.954 43.478 29.41 12.83 46.35 3.66
310 311 4.202040 GCTGCACTTTAATACATGCATGGA 60.202 41.667 29.41 23.41 46.35 3.41
311 312 5.508489 GCTGCACTTTAATACATGCATGGAT 60.508 40.000 29.41 24.67 46.35 3.41
312 313 5.834169 TGCACTTTAATACATGCATGGATG 58.166 37.500 25.17 24.00 42.92 3.51
313 314 5.593502 TGCACTTTAATACATGCATGGATGA 59.406 36.000 31.07 15.51 42.92 2.92
314 315 6.096564 TGCACTTTAATACATGCATGGATGAA 59.903 34.615 31.07 20.81 42.92 2.57
315 316 6.418819 GCACTTTAATACATGCATGGATGAAC 59.581 38.462 31.07 8.23 38.00 3.18
316 317 7.482474 CACTTTAATACATGCATGGATGAACA 58.518 34.615 31.07 16.57 30.03 3.18
317 318 7.975058 CACTTTAATACATGCATGGATGAACAA 59.025 33.333 31.07 13.47 30.03 2.83
318 319 8.530311 ACTTTAATACATGCATGGATGAACAAA 58.470 29.630 31.07 18.90 30.03 2.83
319 320 9.537192 CTTTAATACATGCATGGATGAACAAAT 57.463 29.630 31.07 10.02 30.03 2.32
323 324 6.971726 ACATGCATGGATGAACAAATATCT 57.028 33.333 31.07 4.11 0.00 1.98
324 325 9.743581 ATACATGCATGGATGAACAAATATCTA 57.256 29.630 31.07 11.01 27.92 1.98
325 326 7.879070 ACATGCATGGATGAACAAATATCTAC 58.121 34.615 31.07 0.00 0.00 2.59
326 327 7.722728 ACATGCATGGATGAACAAATATCTACT 59.277 33.333 31.07 2.95 0.00 2.57
327 328 7.500720 TGCATGGATGAACAAATATCTACTG 57.499 36.000 0.00 0.00 0.00 2.74
328 329 6.016860 TGCATGGATGAACAAATATCTACTGC 60.017 38.462 0.00 0.00 0.00 4.40
329 330 6.569226 GCATGGATGAACAAATATCTACTGCC 60.569 42.308 0.00 0.00 0.00 4.85
330 331 6.000246 TGGATGAACAAATATCTACTGCCA 58.000 37.500 0.00 0.00 0.00 4.92
331 332 6.604171 TGGATGAACAAATATCTACTGCCAT 58.396 36.000 0.00 0.00 0.00 4.40
332 333 6.487668 TGGATGAACAAATATCTACTGCCATG 59.512 38.462 0.00 0.00 0.00 3.66
333 334 5.756195 TGAACAAATATCTACTGCCATGC 57.244 39.130 0.00 0.00 0.00 4.06
334 335 5.192176 TGAACAAATATCTACTGCCATGCA 58.808 37.500 0.00 0.00 36.92 3.96
347 348 2.938451 TGCCATGCAGATACTTTCTTCG 59.062 45.455 0.00 0.00 33.32 3.79
348 349 2.939103 GCCATGCAGATACTTTCTTCGT 59.061 45.455 0.00 0.00 29.93 3.85
349 350 3.375299 GCCATGCAGATACTTTCTTCGTT 59.625 43.478 0.00 0.00 29.93 3.85
350 351 4.494855 GCCATGCAGATACTTTCTTCGTTC 60.495 45.833 0.00 0.00 29.93 3.95
351 352 4.034510 CCATGCAGATACTTTCTTCGTTCC 59.965 45.833 0.00 0.00 29.93 3.62
352 353 4.265904 TGCAGATACTTTCTTCGTTCCA 57.734 40.909 0.00 0.00 29.93 3.53
353 354 4.637276 TGCAGATACTTTCTTCGTTCCAA 58.363 39.130 0.00 0.00 29.93 3.53
354 355 5.060506 TGCAGATACTTTCTTCGTTCCAAA 58.939 37.500 0.00 0.00 29.93 3.28
355 356 5.705441 TGCAGATACTTTCTTCGTTCCAAAT 59.295 36.000 0.00 0.00 29.93 2.32
356 357 6.206634 TGCAGATACTTTCTTCGTTCCAAATT 59.793 34.615 0.00 0.00 29.93 1.82
357 358 7.389330 TGCAGATACTTTCTTCGTTCCAAATTA 59.611 33.333 0.00 0.00 29.93 1.40
358 359 7.692705 GCAGATACTTTCTTCGTTCCAAATTAC 59.307 37.037 0.00 0.00 29.93 1.89
359 360 8.936864 CAGATACTTTCTTCGTTCCAAATTACT 58.063 33.333 0.00 0.00 29.93 2.24
360 361 9.152595 AGATACTTTCTTCGTTCCAAATTACTC 57.847 33.333 0.00 0.00 0.00 2.59
361 362 6.224420 ACTTTCTTCGTTCCAAATTACTCG 57.776 37.500 0.00 0.00 0.00 4.18
362 363 5.756833 ACTTTCTTCGTTCCAAATTACTCGT 59.243 36.000 0.00 0.00 0.00 4.18
363 364 5.834239 TTCTTCGTTCCAAATTACTCGTC 57.166 39.130 0.00 0.00 0.00 4.20
364 365 4.873817 TCTTCGTTCCAAATTACTCGTCA 58.126 39.130 0.00 0.00 0.00 4.35
365 366 5.475719 TCTTCGTTCCAAATTACTCGTCAT 58.524 37.500 0.00 0.00 0.00 3.06
366 367 6.623486 TCTTCGTTCCAAATTACTCGTCATA 58.377 36.000 0.00 0.00 0.00 2.15
367 368 6.750501 TCTTCGTTCCAAATTACTCGTCATAG 59.249 38.462 0.00 0.00 0.00 2.23
368 369 6.198650 TCGTTCCAAATTACTCGTCATAGA 57.801 37.500 0.00 0.00 0.00 1.98
369 370 6.623486 TCGTTCCAAATTACTCGTCATAGAA 58.377 36.000 0.00 0.00 0.00 2.10
370 371 7.092079 TCGTTCCAAATTACTCGTCATAGAAA 58.908 34.615 0.00 0.00 0.00 2.52
371 372 7.762615 TCGTTCCAAATTACTCGTCATAGAAAT 59.237 33.333 0.00 0.00 0.00 2.17
372 373 7.846107 CGTTCCAAATTACTCGTCATAGAAATG 59.154 37.037 0.00 0.00 0.00 2.32
373 374 7.786178 TCCAAATTACTCGTCATAGAAATGG 57.214 36.000 0.00 0.00 33.61 3.16
374 375 7.561251 TCCAAATTACTCGTCATAGAAATGGA 58.439 34.615 0.00 0.00 33.61 3.41
375 376 8.210946 TCCAAATTACTCGTCATAGAAATGGAT 58.789 33.333 0.00 0.00 33.61 3.41
376 377 8.285394 CCAAATTACTCGTCATAGAAATGGATG 58.715 37.037 0.00 0.00 33.61 3.51
377 378 8.830580 CAAATTACTCGTCATAGAAATGGATGT 58.169 33.333 0.00 0.00 33.61 3.06
380 381 9.862371 ATTACTCGTCATAGAAATGGATGTATC 57.138 33.333 0.00 0.00 33.61 2.24
381 382 7.531857 ACTCGTCATAGAAATGGATGTATCT 57.468 36.000 0.00 0.00 33.61 1.98
382 383 8.637196 ACTCGTCATAGAAATGGATGTATCTA 57.363 34.615 0.00 0.00 33.61 1.98
383 384 8.735315 ACTCGTCATAGAAATGGATGTATCTAG 58.265 37.037 0.00 0.00 33.61 2.43
384 385 8.863872 TCGTCATAGAAATGGATGTATCTAGA 57.136 34.615 0.00 0.00 33.61 2.43
385 386 9.297037 TCGTCATAGAAATGGATGTATCTAGAA 57.703 33.333 0.00 0.00 33.61 2.10
386 387 9.347934 CGTCATAGAAATGGATGTATCTAGAAC 57.652 37.037 0.00 0.00 33.61 3.01
418 419 8.753497 ACATCTAGATACATCCATATAAGCGA 57.247 34.615 4.54 0.00 0.00 4.93
419 420 8.845227 ACATCTAGATACATCCATATAAGCGAG 58.155 37.037 4.54 0.00 0.00 5.03
420 421 9.061435 CATCTAGATACATCCATATAAGCGAGA 57.939 37.037 4.54 0.00 0.00 4.04
421 422 9.634021 ATCTAGATACATCCATATAAGCGAGAA 57.366 33.333 2.53 0.00 0.00 2.87
422 423 9.114952 TCTAGATACATCCATATAAGCGAGAAG 57.885 37.037 0.00 0.00 0.00 2.85
423 424 7.710676 AGATACATCCATATAAGCGAGAAGT 57.289 36.000 0.00 0.00 0.00 3.01
424 425 8.809468 AGATACATCCATATAAGCGAGAAGTA 57.191 34.615 0.00 0.00 0.00 2.24
425 426 9.244292 AGATACATCCATATAAGCGAGAAGTAA 57.756 33.333 0.00 0.00 0.00 2.24
428 429 8.764524 ACATCCATATAAGCGAGAAGTAATTC 57.235 34.615 0.00 0.00 0.00 2.17
429 430 7.542477 ACATCCATATAAGCGAGAAGTAATTCG 59.458 37.037 0.00 0.00 39.69 3.34
430 431 6.387465 TCCATATAAGCGAGAAGTAATTCGG 58.613 40.000 0.00 0.00 37.30 4.30
431 432 6.208007 TCCATATAAGCGAGAAGTAATTCGGA 59.792 38.462 0.00 0.00 37.30 4.55
432 433 6.866770 CCATATAAGCGAGAAGTAATTCGGAA 59.133 38.462 0.00 0.00 37.30 4.30
433 434 7.148787 CCATATAAGCGAGAAGTAATTCGGAAC 60.149 40.741 0.00 0.00 37.30 3.62
459 460 4.436079 AGGAGTACCTTTTAGTCATGGGT 58.564 43.478 0.00 0.00 45.36 4.51
460 461 4.225267 AGGAGTACCTTTTAGTCATGGGTG 59.775 45.833 0.00 0.00 45.36 4.61
461 462 4.224370 GGAGTACCTTTTAGTCATGGGTGA 59.776 45.833 0.00 0.00 0.00 4.02
462 463 5.104485 GGAGTACCTTTTAGTCATGGGTGAT 60.104 44.000 0.00 0.00 36.60 3.06
463 464 5.990668 AGTACCTTTTAGTCATGGGTGATC 58.009 41.667 0.00 0.00 36.60 2.92
464 465 5.726793 AGTACCTTTTAGTCATGGGTGATCT 59.273 40.000 0.00 0.00 36.60 2.75
465 466 5.520748 ACCTTTTAGTCATGGGTGATCTT 57.479 39.130 0.00 0.00 36.60 2.40
466 467 5.892348 ACCTTTTAGTCATGGGTGATCTTT 58.108 37.500 0.00 0.00 36.60 2.52
467 468 6.314917 ACCTTTTAGTCATGGGTGATCTTTT 58.685 36.000 0.00 0.00 36.60 2.27
468 469 6.782494 ACCTTTTAGTCATGGGTGATCTTTTT 59.218 34.615 0.00 0.00 36.60 1.94
490 491 3.795688 TTTTTGAGAGAGAGGCACCAT 57.204 42.857 0.00 0.00 0.00 3.55
491 492 3.795688 TTTTGAGAGAGAGGCACCATT 57.204 42.857 0.00 0.00 0.00 3.16
506 507 0.676466 CCATTAACTCCAGCCGCACA 60.676 55.000 0.00 0.00 0.00 4.57
513 514 3.357079 CCAGCCGCACACAACCTC 61.357 66.667 0.00 0.00 0.00 3.85
514 515 3.357079 CAGCCGCACACAACCTCC 61.357 66.667 0.00 0.00 0.00 4.30
515 516 4.643387 AGCCGCACACAACCTCCC 62.643 66.667 0.00 0.00 0.00 4.30
516 517 4.643387 GCCGCACACAACCTCCCT 62.643 66.667 0.00 0.00 0.00 4.20
517 518 2.358737 CCGCACACAACCTCCCTC 60.359 66.667 0.00 0.00 0.00 4.30
541 542 1.921346 TACCGGCCATGACCACCTT 60.921 57.895 0.00 0.00 0.00 3.50
552 553 2.115266 CCACCTTCAAAGCCCCGT 59.885 61.111 0.00 0.00 0.00 5.28
559 560 0.885196 TTCAAAGCCCCGTTACATGC 59.115 50.000 0.00 0.00 0.00 4.06
616 617 0.249447 CCGCATGCTCGAGTCCAATA 60.249 55.000 17.13 0.00 0.00 1.90
620 621 1.458445 CATGCTCGAGTCCAATATGCG 59.542 52.381 15.13 0.00 0.00 4.73
624 625 0.174617 TCGAGTCCAATATGCGTGCA 59.825 50.000 0.00 0.00 0.00 4.57
629 630 3.282021 AGTCCAATATGCGTGCAGAAAT 58.718 40.909 0.00 0.00 0.00 2.17
636 637 2.409870 GCGTGCAGAAATGGGAGGG 61.410 63.158 0.00 0.00 0.00 4.30
865 1556 1.436983 GCCGCCTATTTCTTCACCCG 61.437 60.000 0.00 0.00 0.00 5.28
941 1632 2.616330 CGGCCTTTGTCACGTGCAT 61.616 57.895 11.67 0.00 0.00 3.96
1081 1815 2.815211 GCGCCGTCATCTTCTGCA 60.815 61.111 0.00 0.00 0.00 4.41
1603 2451 4.302455 AGTGCTGCTATGTATCGATCAAC 58.698 43.478 0.00 0.00 0.00 3.18
1626 2485 7.690952 ACGGAATGGTATATAGAAGAGAGAC 57.309 40.000 0.00 0.00 0.00 3.36
1714 2622 7.470981 GCTTGGTGCTACTACCTACATTGTATA 60.471 40.741 0.00 0.00 41.43 1.47
1715 2623 8.486942 TTGGTGCTACTACCTACATTGTATAT 57.513 34.615 0.00 0.00 41.43 0.86
1716 2624 9.590828 TTGGTGCTACTACCTACATTGTATATA 57.409 33.333 0.00 0.00 41.43 0.86
1717 2625 9.017509 TGGTGCTACTACCTACATTGTATATAC 57.982 37.037 5.89 5.89 41.43 1.47
1739 2647 4.211920 CTGTAACAAAAGGAAGTGGGGAA 58.788 43.478 0.00 0.00 0.00 3.97
1786 2711 5.194537 AGGTGGATTTCTTCCCTGATACATT 59.805 40.000 0.00 0.00 44.77 2.71
1799 2728 6.102468 TCCCTGATACATTTAATGGTGGATCA 59.898 38.462 9.88 10.59 42.01 2.92
1808 2737 9.818270 ACATTTAATGGTGGATCAATGATCTAT 57.182 29.630 21.04 9.31 35.58 1.98
1852 2792 9.642343 AATGAAGGATATGGGATCATATGAATG 57.358 33.333 9.99 0.00 44.20 2.67
1853 2793 8.396619 TGAAGGATATGGGATCATATGAATGA 57.603 34.615 9.99 0.00 44.20 2.57
2050 3065 9.953825 GAAAAATTACACAGATACTACAGAACG 57.046 33.333 0.00 0.00 0.00 3.95
2514 3662 3.116823 TGGAGGATGGATCTCAGATCTGT 60.117 47.826 21.92 3.10 33.18 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.462678 GAGTGGCGGACTCTCCCC 61.463 72.222 1.38 0.00 46.85 4.81
13 14 1.680651 CCTCTGAGAGTGGCGGACT 60.681 63.158 8.88 0.00 37.76 3.85
14 15 1.979693 ACCTCTGAGAGTGGCGGAC 60.980 63.158 8.88 0.00 32.28 4.79
15 16 1.979155 CACCTCTGAGAGTGGCGGA 60.979 63.158 8.88 0.00 32.28 5.54
16 17 2.575993 CACCTCTGAGAGTGGCGG 59.424 66.667 8.88 0.00 32.28 6.13
17 18 2.125753 GCACCTCTGAGAGTGGCG 60.126 66.667 20.40 0.00 32.28 5.69
18 19 0.952984 GTTGCACCTCTGAGAGTGGC 60.953 60.000 20.40 11.63 32.28 5.01
19 20 0.668706 CGTTGCACCTCTGAGAGTGG 60.669 60.000 20.40 1.01 35.12 4.00
20 21 1.287730 GCGTTGCACCTCTGAGAGTG 61.288 60.000 8.88 16.91 0.00 3.51
21 22 1.005630 GCGTTGCACCTCTGAGAGT 60.006 57.895 8.88 0.00 0.00 3.24
22 23 1.739562 GGCGTTGCACCTCTGAGAG 60.740 63.158 6.17 1.57 0.00 3.20
23 24 2.343758 GGCGTTGCACCTCTGAGA 59.656 61.111 6.17 0.00 0.00 3.27
24 25 2.743928 GGGCGTTGCACCTCTGAG 60.744 66.667 0.00 0.00 0.00 3.35
40 41 4.351054 GAGTGGGTGCAGGGTGGG 62.351 72.222 0.00 0.00 0.00 4.61
41 42 4.351054 GGAGTGGGTGCAGGGTGG 62.351 72.222 0.00 0.00 0.00 4.61
42 43 1.274703 ATAGGAGTGGGTGCAGGGTG 61.275 60.000 0.00 0.00 0.00 4.61
43 44 1.082954 ATAGGAGTGGGTGCAGGGT 59.917 57.895 0.00 0.00 0.00 4.34
44 45 1.528824 CATAGGAGTGGGTGCAGGG 59.471 63.158 0.00 0.00 0.00 4.45
45 46 0.982852 TCCATAGGAGTGGGTGCAGG 60.983 60.000 0.00 0.00 39.80 4.85
46 47 0.467384 CTCCATAGGAGTGGGTGCAG 59.533 60.000 4.89 0.00 44.25 4.41
47 48 2.607811 CTCCATAGGAGTGGGTGCA 58.392 57.895 4.89 0.00 44.25 4.57
56 57 2.297315 CGCTAGATGTTGCTCCATAGGA 59.703 50.000 0.00 0.00 0.00 2.94
57 58 2.681706 CGCTAGATGTTGCTCCATAGG 58.318 52.381 0.00 0.00 0.00 2.57
58 59 2.064762 GCGCTAGATGTTGCTCCATAG 58.935 52.381 0.00 0.00 0.00 2.23
59 60 1.270305 GGCGCTAGATGTTGCTCCATA 60.270 52.381 7.64 0.00 34.52 2.74
60 61 0.533755 GGCGCTAGATGTTGCTCCAT 60.534 55.000 7.64 0.00 34.52 3.41
61 62 1.153369 GGCGCTAGATGTTGCTCCA 60.153 57.895 7.64 0.00 34.52 3.86
62 63 1.889573 GGGCGCTAGATGTTGCTCC 60.890 63.158 7.64 0.00 33.70 4.70
63 64 1.889573 GGGGCGCTAGATGTTGCTC 60.890 63.158 7.64 0.00 0.00 4.26
64 65 2.190578 GGGGCGCTAGATGTTGCT 59.809 61.111 7.64 0.00 0.00 3.91
65 66 3.272334 CGGGGCGCTAGATGTTGC 61.272 66.667 7.64 0.00 0.00 4.17
66 67 1.883084 GACGGGGCGCTAGATGTTG 60.883 63.158 7.64 0.00 0.00 3.33
67 68 2.298158 CTGACGGGGCGCTAGATGTT 62.298 60.000 7.64 0.00 0.00 2.71
68 69 2.758327 TGACGGGGCGCTAGATGT 60.758 61.111 7.64 0.00 0.00 3.06
69 70 2.028190 CTGACGGGGCGCTAGATG 59.972 66.667 7.64 0.00 0.00 2.90
70 71 3.227276 CCTGACGGGGCGCTAGAT 61.227 66.667 7.64 0.00 0.00 1.98
71 72 4.753662 ACCTGACGGGGCGCTAGA 62.754 66.667 7.64 0.00 40.03 2.43
72 73 4.208686 GACCTGACGGGGCGCTAG 62.209 72.222 7.64 0.98 40.03 3.42
77 78 4.083862 GACCAGACCTGACGGGGC 62.084 72.222 5.03 0.15 45.71 5.80
78 79 3.391382 GGACCAGACCTGACGGGG 61.391 72.222 5.03 0.00 40.03 5.73
79 80 2.283966 AGGACCAGACCTGACGGG 60.284 66.667 0.00 0.00 39.01 5.28
80 81 2.701780 CGAGGACCAGACCTGACGG 61.702 68.421 0.00 0.00 40.73 4.79
81 82 1.649390 CTCGAGGACCAGACCTGACG 61.649 65.000 3.91 0.00 40.73 4.35
82 83 1.939769 GCTCGAGGACCAGACCTGAC 61.940 65.000 15.58 0.00 40.73 3.51
83 84 1.679305 GCTCGAGGACCAGACCTGA 60.679 63.158 15.58 0.00 40.73 3.86
84 85 1.662438 GAGCTCGAGGACCAGACCTG 61.662 65.000 15.58 0.00 40.73 4.00
85 86 1.379309 GAGCTCGAGGACCAGACCT 60.379 63.158 15.58 0.00 43.64 3.85
86 87 1.379309 AGAGCTCGAGGACCAGACC 60.379 63.158 15.58 0.00 0.00 3.85
87 88 0.678366 TGAGAGCTCGAGGACCAGAC 60.678 60.000 15.58 0.00 0.00 3.51
88 89 0.038310 TTGAGAGCTCGAGGACCAGA 59.962 55.000 15.58 0.00 0.00 3.86
89 90 0.172352 GTTGAGAGCTCGAGGACCAG 59.828 60.000 15.58 0.00 0.00 4.00
90 91 1.587043 CGTTGAGAGCTCGAGGACCA 61.587 60.000 15.58 0.00 32.16 4.02
91 92 1.137825 CGTTGAGAGCTCGAGGACC 59.862 63.158 15.58 0.00 32.16 4.46
92 93 1.137825 CCGTTGAGAGCTCGAGGAC 59.862 63.158 15.58 5.38 32.16 3.85
93 94 1.002502 TCCGTTGAGAGCTCGAGGA 60.003 57.895 15.58 10.86 32.16 3.71
94 95 1.431440 CTCCGTTGAGAGCTCGAGG 59.569 63.158 15.58 8.67 41.42 4.63
95 96 1.431440 CCTCCGTTGAGAGCTCGAG 59.569 63.158 8.45 8.45 41.42 4.04
96 97 2.701780 GCCTCCGTTGAGAGCTCGA 61.702 63.158 8.37 0.00 41.42 4.04
97 98 2.202676 GCCTCCGTTGAGAGCTCG 60.203 66.667 8.37 0.00 41.42 5.03
98 99 1.446966 GTGCCTCCGTTGAGAGCTC 60.447 63.158 5.27 5.27 41.42 4.09
99 100 2.659610 GTGCCTCCGTTGAGAGCT 59.340 61.111 0.00 0.00 41.42 4.09
100 101 2.811317 CGTGCCTCCGTTGAGAGC 60.811 66.667 0.00 0.00 41.42 4.09
101 102 1.153939 CTCGTGCCTCCGTTGAGAG 60.154 63.158 0.00 0.00 41.42 3.20
102 103 1.176619 TTCTCGTGCCTCCGTTGAGA 61.177 55.000 0.00 0.00 41.42 3.27
103 104 1.009389 GTTCTCGTGCCTCCGTTGAG 61.009 60.000 0.00 0.00 38.42 3.02
104 105 1.006571 GTTCTCGTGCCTCCGTTGA 60.007 57.895 0.00 0.00 0.00 3.18
105 106 0.670546 ATGTTCTCGTGCCTCCGTTG 60.671 55.000 0.00 0.00 0.00 4.10
106 107 0.670546 CATGTTCTCGTGCCTCCGTT 60.671 55.000 0.00 0.00 0.00 4.44
107 108 1.079819 CATGTTCTCGTGCCTCCGT 60.080 57.895 0.00 0.00 0.00 4.69
108 109 0.179100 ATCATGTTCTCGTGCCTCCG 60.179 55.000 0.00 0.00 0.00 4.63
109 110 2.890808 TATCATGTTCTCGTGCCTCC 57.109 50.000 0.00 0.00 0.00 4.30
110 111 3.738282 GTGATATCATGTTCTCGTGCCTC 59.262 47.826 9.02 0.00 0.00 4.70
111 112 3.493350 GGTGATATCATGTTCTCGTGCCT 60.493 47.826 9.02 0.00 0.00 4.75
112 113 2.802816 GGTGATATCATGTTCTCGTGCC 59.197 50.000 9.02 0.00 0.00 5.01
113 114 2.802816 GGGTGATATCATGTTCTCGTGC 59.197 50.000 9.02 0.00 0.00 5.34
114 115 4.053983 CAGGGTGATATCATGTTCTCGTG 58.946 47.826 9.02 3.78 0.00 4.35
115 116 3.706594 ACAGGGTGATATCATGTTCTCGT 59.293 43.478 9.02 0.00 0.00 4.18
116 117 4.327982 ACAGGGTGATATCATGTTCTCG 57.672 45.455 9.02 0.00 0.00 4.04
117 118 4.818546 CCAACAGGGTGATATCATGTTCTC 59.181 45.833 16.65 2.18 32.01 2.87
118 119 4.785301 CCAACAGGGTGATATCATGTTCT 58.215 43.478 16.65 7.07 32.01 3.01
119 120 3.316308 GCCAACAGGGTGATATCATGTTC 59.684 47.826 16.65 6.83 39.65 3.18
120 121 3.053395 AGCCAACAGGGTGATATCATGTT 60.053 43.478 14.61 14.61 39.65 2.71
121 122 2.511218 AGCCAACAGGGTGATATCATGT 59.489 45.455 9.02 6.65 39.65 3.21
122 123 3.219176 AGCCAACAGGGTGATATCATG 57.781 47.619 9.02 5.98 39.65 3.07
123 124 3.328931 CCTAGCCAACAGGGTGATATCAT 59.671 47.826 9.02 0.00 39.65 2.45
124 125 2.705658 CCTAGCCAACAGGGTGATATCA 59.294 50.000 0.00 0.00 39.65 2.15
125 126 2.551071 GCCTAGCCAACAGGGTGATATC 60.551 54.545 0.00 0.00 39.65 1.63
126 127 1.421646 GCCTAGCCAACAGGGTGATAT 59.578 52.381 0.00 0.00 39.65 1.63
127 128 0.837272 GCCTAGCCAACAGGGTGATA 59.163 55.000 0.00 0.00 39.65 2.15
128 129 1.609783 GCCTAGCCAACAGGGTGAT 59.390 57.895 0.00 0.00 39.65 3.06
129 130 3.077907 GCCTAGCCAACAGGGTGA 58.922 61.111 0.00 0.00 39.65 4.02
141 142 3.112205 ATGCTCCTTGCGGGCCTAG 62.112 63.158 0.84 0.00 46.63 3.02
142 143 3.089874 ATGCTCCTTGCGGGCCTA 61.090 61.111 0.84 0.00 46.63 3.93
143 144 4.809496 CATGCTCCTTGCGGGCCT 62.809 66.667 0.84 0.00 46.63 5.19
146 147 1.890979 CTAGCATGCTCCTTGCGGG 60.891 63.158 26.57 1.75 46.63 6.13
147 148 2.541120 GCTAGCATGCTCCTTGCGG 61.541 63.158 26.57 7.87 46.63 5.69
148 149 1.523258 AGCTAGCATGCTCCTTGCG 60.523 57.895 26.57 7.98 46.63 4.85
149 150 4.555610 AGCTAGCATGCTCCTTGC 57.444 55.556 26.57 22.45 39.34 4.01
156 157 0.108207 ACCTGGATGAGCTAGCATGC 59.892 55.000 18.83 10.51 37.16 4.06
157 158 2.492012 GAACCTGGATGAGCTAGCATG 58.508 52.381 18.83 0.00 0.00 4.06
158 159 1.069823 CGAACCTGGATGAGCTAGCAT 59.930 52.381 18.83 1.68 0.00 3.79
159 160 0.461548 CGAACCTGGATGAGCTAGCA 59.538 55.000 18.83 0.00 0.00 3.49
160 161 0.747255 TCGAACCTGGATGAGCTAGC 59.253 55.000 6.62 6.62 0.00 3.42
161 162 2.034053 GTCTCGAACCTGGATGAGCTAG 59.966 54.545 0.00 0.00 0.00 3.42
162 163 2.025155 GTCTCGAACCTGGATGAGCTA 58.975 52.381 0.00 0.00 0.00 3.32
163 164 0.820871 GTCTCGAACCTGGATGAGCT 59.179 55.000 0.00 0.00 0.00 4.09
164 165 0.820871 AGTCTCGAACCTGGATGAGC 59.179 55.000 0.00 1.63 0.00 4.26
165 166 2.493675 TCAAGTCTCGAACCTGGATGAG 59.506 50.000 0.00 4.50 0.00 2.90
166 167 2.493675 CTCAAGTCTCGAACCTGGATGA 59.506 50.000 0.00 0.00 0.00 2.92
167 168 2.232452 ACTCAAGTCTCGAACCTGGATG 59.768 50.000 0.00 0.00 0.00 3.51
168 169 2.232452 CACTCAAGTCTCGAACCTGGAT 59.768 50.000 0.00 0.00 0.00 3.41
169 170 1.613925 CACTCAAGTCTCGAACCTGGA 59.386 52.381 0.00 0.00 0.00 3.86
170 171 1.613925 TCACTCAAGTCTCGAACCTGG 59.386 52.381 0.00 0.00 0.00 4.45
171 172 2.608261 GGTCACTCAAGTCTCGAACCTG 60.608 54.545 0.00 0.00 0.00 4.00
172 173 1.614413 GGTCACTCAAGTCTCGAACCT 59.386 52.381 0.00 0.00 0.00 3.50
173 174 1.336980 GGGTCACTCAAGTCTCGAACC 60.337 57.143 0.00 0.00 0.00 3.62
174 175 1.666311 CGGGTCACTCAAGTCTCGAAC 60.666 57.143 0.00 0.00 0.00 3.95
175 176 0.596577 CGGGTCACTCAAGTCTCGAA 59.403 55.000 0.00 0.00 0.00 3.71
176 177 0.536687 ACGGGTCACTCAAGTCTCGA 60.537 55.000 0.00 0.00 0.00 4.04
177 178 0.387367 CACGGGTCACTCAAGTCTCG 60.387 60.000 0.00 0.00 0.00 4.04
178 179 0.038159 CCACGGGTCACTCAAGTCTC 60.038 60.000 0.00 0.00 0.00 3.36
179 180 0.759436 ACCACGGGTCACTCAAGTCT 60.759 55.000 0.00 0.00 0.00 3.24
180 181 0.600255 CACCACGGGTCACTCAAGTC 60.600 60.000 0.00 0.00 31.02 3.01
181 182 1.335132 ACACCACGGGTCACTCAAGT 61.335 55.000 0.00 0.00 31.02 3.16
182 183 0.179056 AACACCACGGGTCACTCAAG 60.179 55.000 0.00 0.00 31.02 3.02
183 184 0.253610 AAACACCACGGGTCACTCAA 59.746 50.000 0.00 0.00 31.02 3.02
184 185 1.069513 CTAAACACCACGGGTCACTCA 59.930 52.381 0.00 0.00 31.02 3.41
185 186 1.342174 TCTAAACACCACGGGTCACTC 59.658 52.381 0.00 0.00 31.02 3.51
186 187 1.343465 CTCTAAACACCACGGGTCACT 59.657 52.381 0.00 0.00 31.02 3.41
187 188 1.069668 ACTCTAAACACCACGGGTCAC 59.930 52.381 0.00 0.00 31.02 3.67
188 189 1.416243 ACTCTAAACACCACGGGTCA 58.584 50.000 0.00 0.00 31.02 4.02
189 190 2.538512 AACTCTAAACACCACGGGTC 57.461 50.000 0.00 0.00 31.02 4.46
190 191 2.436911 AGAAACTCTAAACACCACGGGT 59.563 45.455 0.00 0.00 35.62 5.28
191 192 3.121738 AGAAACTCTAAACACCACGGG 57.878 47.619 0.00 0.00 0.00 5.28
192 193 4.377897 AGAAGAAACTCTAAACACCACGG 58.622 43.478 0.00 0.00 0.00 4.94
193 194 5.981315 TGTAGAAGAAACTCTAAACACCACG 59.019 40.000 0.00 0.00 29.74 4.94
194 195 7.781548 TTGTAGAAGAAACTCTAAACACCAC 57.218 36.000 0.00 0.00 29.74 4.16
195 196 8.795842 TTTTGTAGAAGAAACTCTAAACACCA 57.204 30.769 0.00 0.00 29.74 4.17
209 210 9.349713 ACAACAGTTCCATATTTTTGTAGAAGA 57.650 29.630 0.00 0.00 0.00 2.87
210 211 9.398170 CACAACAGTTCCATATTTTTGTAGAAG 57.602 33.333 0.00 0.00 0.00 2.85
211 212 7.865385 GCACAACAGTTCCATATTTTTGTAGAA 59.135 33.333 0.00 0.00 0.00 2.10
212 213 7.367285 GCACAACAGTTCCATATTTTTGTAGA 58.633 34.615 0.00 0.00 0.00 2.59
213 214 6.305399 CGCACAACAGTTCCATATTTTTGTAG 59.695 38.462 0.00 0.00 0.00 2.74
214 215 6.146216 CGCACAACAGTTCCATATTTTTGTA 58.854 36.000 0.00 0.00 0.00 2.41
215 216 4.981674 CGCACAACAGTTCCATATTTTTGT 59.018 37.500 0.00 0.00 0.00 2.83
216 217 4.385447 CCGCACAACAGTTCCATATTTTTG 59.615 41.667 0.00 0.00 0.00 2.44
217 218 4.279671 TCCGCACAACAGTTCCATATTTTT 59.720 37.500 0.00 0.00 0.00 1.94
218 219 3.823873 TCCGCACAACAGTTCCATATTTT 59.176 39.130 0.00 0.00 0.00 1.82
219 220 3.190535 GTCCGCACAACAGTTCCATATTT 59.809 43.478 0.00 0.00 0.00 1.40
220 221 2.747446 GTCCGCACAACAGTTCCATATT 59.253 45.455 0.00 0.00 0.00 1.28
221 222 2.356135 GTCCGCACAACAGTTCCATAT 58.644 47.619 0.00 0.00 0.00 1.78
222 223 1.803334 GTCCGCACAACAGTTCCATA 58.197 50.000 0.00 0.00 0.00 2.74
223 224 1.227999 CGTCCGCACAACAGTTCCAT 61.228 55.000 0.00 0.00 0.00 3.41
224 225 1.885388 CGTCCGCACAACAGTTCCA 60.885 57.895 0.00 0.00 0.00 3.53
225 226 1.593209 TCGTCCGCACAACAGTTCC 60.593 57.895 0.00 0.00 0.00 3.62
226 227 1.563173 GTCGTCCGCACAACAGTTC 59.437 57.895 0.00 0.00 0.00 3.01
227 228 2.235016 CGTCGTCCGCACAACAGTT 61.235 57.895 0.00 0.00 0.00 3.16
228 229 2.657296 CGTCGTCCGCACAACAGT 60.657 61.111 0.00 0.00 0.00 3.55
229 230 2.354188 TCGTCGTCCGCACAACAG 60.354 61.111 0.00 0.00 36.19 3.16
230 231 2.656007 GTCGTCGTCCGCACAACA 60.656 61.111 0.00 0.00 36.19 3.33
231 232 2.354305 AGTCGTCGTCCGCACAAC 60.354 61.111 0.00 0.00 36.19 3.32
232 233 2.354188 CAGTCGTCGTCCGCACAA 60.354 61.111 0.00 0.00 36.19 3.33
233 234 3.531920 GACAGTCGTCGTCCGCACA 62.532 63.158 0.00 0.00 36.19 4.57
234 235 2.799916 GACAGTCGTCGTCCGCAC 60.800 66.667 0.00 0.00 36.19 5.34
242 243 1.728502 GCTAACGTGGAGACAGTCGTC 60.729 57.143 1.99 0.00 41.51 4.20
243 244 0.240411 GCTAACGTGGAGACAGTCGT 59.760 55.000 1.99 0.00 43.83 4.34
244 245 0.522180 AGCTAACGTGGAGACAGTCG 59.478 55.000 1.99 0.00 44.46 4.18
245 246 1.983972 CAGCTAACGTGGAGACAGTC 58.016 55.000 1.99 0.00 44.46 3.51
246 247 0.038159 GCAGCTAACGTGGAGACAGT 60.038 55.000 1.99 0.00 44.46 3.55
247 248 0.038251 TGCAGCTAACGTGGAGACAG 60.038 55.000 1.99 0.00 44.46 3.51
248 249 0.319555 GTGCAGCTAACGTGGAGACA 60.320 55.000 1.99 0.00 38.70 3.41
249 250 1.344942 CGTGCAGCTAACGTGGAGAC 61.345 60.000 11.86 0.00 36.31 3.36
250 251 1.080772 CGTGCAGCTAACGTGGAGA 60.081 57.895 11.86 0.00 36.31 3.71
251 252 0.458543 ATCGTGCAGCTAACGTGGAG 60.459 55.000 17.67 0.00 41.70 3.86
252 253 0.735978 CATCGTGCAGCTAACGTGGA 60.736 55.000 17.67 3.02 41.70 4.02
253 254 1.695893 CCATCGTGCAGCTAACGTGG 61.696 60.000 17.67 18.35 41.70 4.94
254 255 1.014044 ACCATCGTGCAGCTAACGTG 61.014 55.000 17.67 14.75 41.70 4.49
255 256 0.528924 TACCATCGTGCAGCTAACGT 59.471 50.000 17.67 5.92 41.70 3.99
256 257 1.635844 TTACCATCGTGCAGCTAACG 58.364 50.000 13.47 13.47 42.36 3.18
257 258 2.544267 GGATTACCATCGTGCAGCTAAC 59.456 50.000 0.00 0.00 35.97 2.34
258 259 2.169561 TGGATTACCATCGTGCAGCTAA 59.830 45.455 0.00 0.00 41.77 3.09
259 260 1.760029 TGGATTACCATCGTGCAGCTA 59.240 47.619 0.00 0.00 41.77 3.32
260 261 0.541392 TGGATTACCATCGTGCAGCT 59.459 50.000 0.00 0.00 41.77 4.24
261 262 0.940126 CTGGATTACCATCGTGCAGC 59.060 55.000 0.00 0.00 45.87 5.25
262 263 0.940126 GCTGGATTACCATCGTGCAG 59.060 55.000 0.00 0.00 45.87 4.41
263 264 0.463654 GGCTGGATTACCATCGTGCA 60.464 55.000 0.00 0.00 45.87 4.57
264 265 1.498865 CGGCTGGATTACCATCGTGC 61.499 60.000 0.00 0.00 45.87 5.34
265 266 0.179084 ACGGCTGGATTACCATCGTG 60.179 55.000 13.52 0.45 46.00 4.35
266 267 2.208527 ACGGCTGGATTACCATCGT 58.791 52.632 0.00 0.00 45.87 3.73
267 268 1.330521 CAAACGGCTGGATTACCATCG 59.669 52.381 0.00 0.00 45.87 3.84
268 269 1.065551 GCAAACGGCTGGATTACCATC 59.934 52.381 0.00 0.00 45.87 3.51
269 270 1.102978 GCAAACGGCTGGATTACCAT 58.897 50.000 0.00 0.00 45.87 3.55
270 271 2.562125 GCAAACGGCTGGATTACCA 58.438 52.632 0.00 0.00 44.76 3.25
280 281 2.064573 ATTAAAGTGCAGCAAACGGC 57.935 45.000 0.00 0.00 45.30 5.68
281 282 4.153958 TGTATTAAAGTGCAGCAAACGG 57.846 40.909 0.00 0.00 0.00 4.44
282 283 4.030529 GCATGTATTAAAGTGCAGCAAACG 59.969 41.667 0.00 0.00 37.52 3.60
283 284 4.922692 TGCATGTATTAAAGTGCAGCAAAC 59.077 37.500 0.00 0.00 42.13 2.93
284 285 5.131594 TGCATGTATTAAAGTGCAGCAAA 57.868 34.783 0.00 0.00 42.13 3.68
285 286 4.780275 TGCATGTATTAAAGTGCAGCAA 57.220 36.364 0.00 0.00 42.13 3.91
290 291 6.075762 TCATCCATGCATGTATTAAAGTGC 57.924 37.500 24.58 0.00 38.05 4.40
291 292 7.482474 TGTTCATCCATGCATGTATTAAAGTG 58.518 34.615 24.58 11.01 0.00 3.16
292 293 7.643569 TGTTCATCCATGCATGTATTAAAGT 57.356 32.000 24.58 0.00 0.00 2.66
293 294 8.929827 TTTGTTCATCCATGCATGTATTAAAG 57.070 30.769 24.58 8.13 0.00 1.85
297 298 9.085645 AGATATTTGTTCATCCATGCATGTATT 57.914 29.630 24.58 6.69 0.00 1.89
298 299 8.645814 AGATATTTGTTCATCCATGCATGTAT 57.354 30.769 24.58 12.62 0.00 2.29
299 300 9.002600 GTAGATATTTGTTCATCCATGCATGTA 57.997 33.333 24.58 10.52 0.00 2.29
300 301 6.971726 AGATATTTGTTCATCCATGCATGT 57.028 33.333 24.58 4.88 0.00 3.21
301 302 8.021396 CAGTAGATATTTGTTCATCCATGCATG 58.979 37.037 20.19 20.19 0.00 4.06
302 303 7.309012 GCAGTAGATATTTGTTCATCCATGCAT 60.309 37.037 0.00 0.00 30.63 3.96
303 304 6.016860 GCAGTAGATATTTGTTCATCCATGCA 60.017 38.462 0.00 0.00 30.63 3.96
304 305 6.376978 GCAGTAGATATTTGTTCATCCATGC 58.623 40.000 0.00 0.00 0.00 4.06
305 306 6.487668 TGGCAGTAGATATTTGTTCATCCATG 59.512 38.462 0.00 0.00 0.00 3.66
306 307 6.604171 TGGCAGTAGATATTTGTTCATCCAT 58.396 36.000 0.00 0.00 0.00 3.41
307 308 6.000246 TGGCAGTAGATATTTGTTCATCCA 58.000 37.500 0.00 0.00 0.00 3.41
308 309 6.569226 GCATGGCAGTAGATATTTGTTCATCC 60.569 42.308 0.00 0.00 0.00 3.51
309 310 6.016860 TGCATGGCAGTAGATATTTGTTCATC 60.017 38.462 0.00 0.00 33.32 2.92
310 311 5.829391 TGCATGGCAGTAGATATTTGTTCAT 59.171 36.000 0.00 0.00 33.32 2.57
311 312 5.192176 TGCATGGCAGTAGATATTTGTTCA 58.808 37.500 0.00 0.00 33.32 3.18
312 313 5.756195 TGCATGGCAGTAGATATTTGTTC 57.244 39.130 0.00 0.00 33.32 3.18
326 327 2.938451 CGAAGAAAGTATCTGCATGGCA 59.062 45.455 0.00 0.00 38.79 4.92
327 328 2.939103 ACGAAGAAAGTATCTGCATGGC 59.061 45.455 0.00 0.00 38.79 4.40
328 329 4.034510 GGAACGAAGAAAGTATCTGCATGG 59.965 45.833 0.00 0.00 38.79 3.66
329 330 4.631377 TGGAACGAAGAAAGTATCTGCATG 59.369 41.667 0.00 0.00 38.79 4.06
330 331 4.832248 TGGAACGAAGAAAGTATCTGCAT 58.168 39.130 0.00 0.00 38.79 3.96
331 332 4.265904 TGGAACGAAGAAAGTATCTGCA 57.734 40.909 0.00 0.00 38.79 4.41
332 333 5.607119 TTTGGAACGAAGAAAGTATCTGC 57.393 39.130 0.00 0.00 38.79 4.26
333 334 8.936864 AGTAATTTGGAACGAAGAAAGTATCTG 58.063 33.333 0.00 0.00 38.79 2.90
334 335 9.152595 GAGTAATTTGGAACGAAGAAAGTATCT 57.847 33.333 0.00 0.00 41.32 1.98
335 336 8.108782 CGAGTAATTTGGAACGAAGAAAGTATC 58.891 37.037 0.00 0.00 0.00 2.24
336 337 7.601508 ACGAGTAATTTGGAACGAAGAAAGTAT 59.398 33.333 0.00 0.00 0.00 2.12
337 338 6.925165 ACGAGTAATTTGGAACGAAGAAAGTA 59.075 34.615 0.00 0.00 0.00 2.24
338 339 5.756833 ACGAGTAATTTGGAACGAAGAAAGT 59.243 36.000 0.00 0.00 0.00 2.66
339 340 6.073980 TGACGAGTAATTTGGAACGAAGAAAG 60.074 38.462 0.00 0.00 0.00 2.62
340 341 5.754406 TGACGAGTAATTTGGAACGAAGAAA 59.246 36.000 0.00 0.00 0.00 2.52
341 342 5.291178 TGACGAGTAATTTGGAACGAAGAA 58.709 37.500 0.00 0.00 0.00 2.52
342 343 4.873817 TGACGAGTAATTTGGAACGAAGA 58.126 39.130 0.00 0.00 0.00 2.87
343 344 5.779806 ATGACGAGTAATTTGGAACGAAG 57.220 39.130 0.00 0.00 0.00 3.79
344 345 6.623486 TCTATGACGAGTAATTTGGAACGAA 58.377 36.000 0.00 0.00 0.00 3.85
345 346 6.198650 TCTATGACGAGTAATTTGGAACGA 57.801 37.500 0.00 0.00 0.00 3.85
346 347 6.880822 TTCTATGACGAGTAATTTGGAACG 57.119 37.500 0.00 0.00 0.00 3.95
347 348 8.122952 CCATTTCTATGACGAGTAATTTGGAAC 58.877 37.037 0.00 0.00 33.37 3.62
348 349 8.044309 TCCATTTCTATGACGAGTAATTTGGAA 58.956 33.333 0.00 0.00 33.37 3.53
349 350 7.561251 TCCATTTCTATGACGAGTAATTTGGA 58.439 34.615 0.00 0.00 33.37 3.53
350 351 7.786178 TCCATTTCTATGACGAGTAATTTGG 57.214 36.000 0.00 0.00 33.37 3.28
351 352 8.830580 ACATCCATTTCTATGACGAGTAATTTG 58.169 33.333 0.00 0.00 33.37 2.32
352 353 8.964476 ACATCCATTTCTATGACGAGTAATTT 57.036 30.769 0.00 0.00 33.37 1.82
354 355 9.862371 GATACATCCATTTCTATGACGAGTAAT 57.138 33.333 0.00 0.00 33.37 1.89
355 356 9.078990 AGATACATCCATTTCTATGACGAGTAA 57.921 33.333 0.00 0.00 33.37 2.24
356 357 8.637196 AGATACATCCATTTCTATGACGAGTA 57.363 34.615 0.00 0.00 33.37 2.59
357 358 7.531857 AGATACATCCATTTCTATGACGAGT 57.468 36.000 0.00 0.00 33.37 4.18
358 359 8.951243 TCTAGATACATCCATTTCTATGACGAG 58.049 37.037 0.00 0.00 33.37 4.18
359 360 8.863872 TCTAGATACATCCATTTCTATGACGA 57.136 34.615 0.00 0.00 33.37 4.20
360 361 9.347934 GTTCTAGATACATCCATTTCTATGACG 57.652 37.037 0.00 0.00 33.37 4.35
392 393 9.847224 TCGCTTATATGGATGTATCTAGATGTA 57.153 33.333 15.79 4.44 0.00 2.29
393 394 8.753497 TCGCTTATATGGATGTATCTAGATGT 57.247 34.615 15.79 1.25 0.00 3.06
394 395 9.061435 TCTCGCTTATATGGATGTATCTAGATG 57.939 37.037 15.79 0.00 0.00 2.90
395 396 9.634021 TTCTCGCTTATATGGATGTATCTAGAT 57.366 33.333 10.73 10.73 0.00 1.98
396 397 9.114952 CTTCTCGCTTATATGGATGTATCTAGA 57.885 37.037 0.00 0.00 0.00 2.43
397 398 8.898761 ACTTCTCGCTTATATGGATGTATCTAG 58.101 37.037 0.00 0.00 0.00 2.43
398 399 8.809468 ACTTCTCGCTTATATGGATGTATCTA 57.191 34.615 0.00 0.00 0.00 1.98
399 400 7.710676 ACTTCTCGCTTATATGGATGTATCT 57.289 36.000 0.00 0.00 0.00 1.98
402 403 9.856488 GAATTACTTCTCGCTTATATGGATGTA 57.144 33.333 0.00 0.00 0.00 2.29
403 404 7.542477 CGAATTACTTCTCGCTTATATGGATGT 59.458 37.037 0.00 0.00 0.00 3.06
404 405 7.009631 CCGAATTACTTCTCGCTTATATGGATG 59.990 40.741 0.00 0.00 33.70 3.51
405 406 7.036220 CCGAATTACTTCTCGCTTATATGGAT 58.964 38.462 0.00 0.00 33.70 3.41
406 407 6.208007 TCCGAATTACTTCTCGCTTATATGGA 59.792 38.462 0.00 0.00 33.70 3.41
407 408 6.387465 TCCGAATTACTTCTCGCTTATATGG 58.613 40.000 0.00 0.00 33.70 2.74
408 409 7.409449 CGTTCCGAATTACTTCTCGCTTATATG 60.409 40.741 0.00 0.00 33.70 1.78
409 410 6.581542 CGTTCCGAATTACTTCTCGCTTATAT 59.418 38.462 0.00 0.00 33.70 0.86
410 411 5.911280 CGTTCCGAATTACTTCTCGCTTATA 59.089 40.000 0.00 0.00 33.70 0.98
411 412 4.738740 CGTTCCGAATTACTTCTCGCTTAT 59.261 41.667 0.00 0.00 33.70 1.73
412 413 4.100529 CGTTCCGAATTACTTCTCGCTTA 58.899 43.478 0.00 0.00 33.70 3.09
413 414 2.921754 CGTTCCGAATTACTTCTCGCTT 59.078 45.455 0.00 0.00 33.70 4.68
414 415 2.527100 CGTTCCGAATTACTTCTCGCT 58.473 47.619 0.00 0.00 33.70 4.93
415 416 1.587034 CCGTTCCGAATTACTTCTCGC 59.413 52.381 0.00 0.00 33.70 5.03
416 417 3.141002 TCCGTTCCGAATTACTTCTCG 57.859 47.619 0.00 0.00 34.83 4.04
417 418 3.864003 CCTTCCGTTCCGAATTACTTCTC 59.136 47.826 0.00 0.00 0.00 2.87
418 419 3.512724 TCCTTCCGTTCCGAATTACTTCT 59.487 43.478 0.00 0.00 0.00 2.85
419 420 3.853475 TCCTTCCGTTCCGAATTACTTC 58.147 45.455 0.00 0.00 0.00 3.01
420 421 3.260128 ACTCCTTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
421 422 2.830321 ACTCCTTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
422 423 3.242549 ACTCCTTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
423 424 3.131046 GGTACTCCTTCCGTTCCGAATTA 59.869 47.826 0.00 0.00 0.00 1.40
424 425 2.093816 GGTACTCCTTCCGTTCCGAATT 60.094 50.000 0.00 0.00 0.00 2.17
425 426 1.479730 GGTACTCCTTCCGTTCCGAAT 59.520 52.381 0.00 0.00 0.00 3.34
426 427 0.890683 GGTACTCCTTCCGTTCCGAA 59.109 55.000 0.00 0.00 0.00 4.30
427 428 0.038744 AGGTACTCCTTCCGTTCCGA 59.961 55.000 0.00 0.00 42.12 4.55
428 429 2.576298 AGGTACTCCTTCCGTTCCG 58.424 57.895 0.00 0.00 42.12 4.30
436 437 8.688975 ATCACCCATGACTAAAAGGTACTCCTT 61.689 40.741 0.00 0.00 46.11 3.36
437 438 7.270629 ATCACCCATGACTAAAAGGTACTCCT 61.271 42.308 0.00 0.00 41.26 3.69
438 439 4.224370 TCACCCATGACTAAAAGGTACTCC 59.776 45.833 0.00 0.00 38.49 3.85
439 440 5.416271 TCACCCATGACTAAAAGGTACTC 57.584 43.478 0.00 0.00 38.49 2.59
440 441 5.726793 AGATCACCCATGACTAAAAGGTACT 59.273 40.000 0.00 0.00 37.99 2.73
441 442 5.990668 AGATCACCCATGACTAAAAGGTAC 58.009 41.667 0.00 0.00 37.79 3.34
442 443 6.636454 AAGATCACCCATGACTAAAAGGTA 57.364 37.500 0.00 0.00 37.79 3.08
443 444 5.520748 AAGATCACCCATGACTAAAAGGT 57.479 39.130 0.00 0.00 37.79 3.50
444 445 6.840780 AAAAGATCACCCATGACTAAAAGG 57.159 37.500 0.00 0.00 37.79 3.11
470 471 3.795688 ATGGTGCCTCTCTCTCAAAAA 57.204 42.857 0.00 0.00 0.00 1.94
471 472 3.795688 AATGGTGCCTCTCTCTCAAAA 57.204 42.857 0.00 0.00 0.00 2.44
472 473 4.287067 AGTTAATGGTGCCTCTCTCTCAAA 59.713 41.667 0.00 0.00 0.00 2.69
473 474 3.840666 AGTTAATGGTGCCTCTCTCTCAA 59.159 43.478 0.00 0.00 0.00 3.02
474 475 3.445008 AGTTAATGGTGCCTCTCTCTCA 58.555 45.455 0.00 0.00 0.00 3.27
475 476 3.181470 GGAGTTAATGGTGCCTCTCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
476 477 2.769095 GGAGTTAATGGTGCCTCTCTCT 59.231 50.000 0.00 0.00 0.00 3.10
477 478 2.501723 TGGAGTTAATGGTGCCTCTCTC 59.498 50.000 0.00 0.00 0.00 3.20
478 479 2.503356 CTGGAGTTAATGGTGCCTCTCT 59.497 50.000 0.00 0.00 0.00 3.10
479 480 2.911484 CTGGAGTTAATGGTGCCTCTC 58.089 52.381 0.00 0.00 0.00 3.20
490 491 0.179043 TTGTGTGCGGCTGGAGTTAA 60.179 50.000 0.00 0.00 0.00 2.01
491 492 0.882927 GTTGTGTGCGGCTGGAGTTA 60.883 55.000 0.00 0.00 0.00 2.24
506 507 1.349067 GTACTGTGGAGGGAGGTTGT 58.651 55.000 0.00 0.00 0.00 3.32
513 514 3.782443 GGCCGGTACTGTGGAGGG 61.782 72.222 1.90 0.00 0.00 4.30
514 515 2.367202 ATGGCCGGTACTGTGGAGG 61.367 63.158 1.90 0.00 0.00 4.30
515 516 1.153369 CATGGCCGGTACTGTGGAG 60.153 63.158 1.90 0.00 0.00 3.86
516 517 1.610967 TCATGGCCGGTACTGTGGA 60.611 57.895 1.90 0.00 0.00 4.02
517 518 1.449601 GTCATGGCCGGTACTGTGG 60.450 63.158 1.90 0.00 0.00 4.17
541 542 0.037590 AGCATGTAACGGGGCTTTGA 59.962 50.000 0.00 0.00 31.34 2.69
552 553 1.531748 GGCTGGGGCTAGCATGTAA 59.468 57.895 18.24 0.00 45.46 2.41
616 617 1.033746 CCTCCCATTTCTGCACGCAT 61.034 55.000 0.00 0.00 0.00 4.73
620 621 2.054453 GCCCCTCCCATTTCTGCAC 61.054 63.158 0.00 0.00 0.00 4.57
624 625 2.983879 CGGTGCCCCTCCCATTTCT 61.984 63.158 0.00 0.00 0.00 2.52
739 741 4.111016 GCGGTTAGTTTGCGGGCC 62.111 66.667 0.00 0.00 0.00 5.80
924 1615 0.664166 CAATGCACGTGACAAAGGCC 60.664 55.000 22.23 0.00 0.00 5.19
928 1619 1.009108 CCGCAATGCACGTGACAAA 60.009 52.632 22.23 0.91 0.00 2.83
932 1623 3.176661 CATCCGCAATGCACGTGA 58.823 55.556 22.23 4.80 0.00 4.35
985 1682 2.606961 CCATTATGATGGCGCGCGT 61.607 57.895 32.35 16.88 45.96 6.01
986 1683 2.174107 CCATTATGATGGCGCGCG 59.826 61.111 28.44 28.44 45.96 6.86
1072 1806 1.589993 CGTCGGCGATGCAGAAGAT 60.590 57.895 17.01 0.00 41.33 2.40
1342 2106 3.785499 CTCCTGCGACGACGACGA 61.785 66.667 22.94 7.63 42.66 4.20
1343 2107 4.813526 CCTCCTGCGACGACGACG 62.814 72.222 15.13 15.13 42.66 5.12
1344 2108 3.429141 TCCTCCTGCGACGACGAC 61.429 66.667 12.29 3.11 42.66 4.34
1345 2109 3.429141 GTCCTCCTGCGACGACGA 61.429 66.667 12.29 0.00 42.66 4.20
1463 2266 5.904941 AGAGTCTCTCTCAATTGCACATAG 58.095 41.667 0.00 0.00 44.98 2.23
1603 2451 7.608376 TCAGTCTCTCTTCTATATACCATTCCG 59.392 40.741 0.00 0.00 0.00 4.30
1626 2485 8.315391 TCTCACTCACTTTTTATTGTCATCAG 57.685 34.615 0.00 0.00 0.00 2.90
1714 2622 5.073965 TCCCCACTTCCTTTTGTTACAGTAT 59.926 40.000 0.00 0.00 0.00 2.12
1715 2623 4.412858 TCCCCACTTCCTTTTGTTACAGTA 59.587 41.667 0.00 0.00 0.00 2.74
1716 2624 3.203487 TCCCCACTTCCTTTTGTTACAGT 59.797 43.478 0.00 0.00 0.00 3.55
1717 2625 3.827722 TCCCCACTTCCTTTTGTTACAG 58.172 45.455 0.00 0.00 0.00 2.74
1775 2696 6.306199 TGATCCACCATTAAATGTATCAGGG 58.694 40.000 0.00 0.00 0.00 4.45
1786 2711 7.987820 TCCATAGATCATTGATCCACCATTAA 58.012 34.615 20.49 0.17 39.66 1.40
1808 2737 8.838741 TCCTTCATTATCCATTCATATGATCCA 58.161 33.333 6.17 0.00 33.37 3.41
1851 2791 8.821686 ACATTCATGGTAACCTTCATTAATCA 57.178 30.769 0.00 0.00 0.00 2.57
1852 2792 9.736023 GAACATTCATGGTAACCTTCATTAATC 57.264 33.333 0.00 0.00 0.00 1.75
1853 2793 9.479549 AGAACATTCATGGTAACCTTCATTAAT 57.520 29.630 0.00 0.00 0.00 1.40
1854 2794 8.739039 CAGAACATTCATGGTAACCTTCATTAA 58.261 33.333 0.00 0.00 0.00 1.40
1856 2796 6.721208 ACAGAACATTCATGGTAACCTTCATT 59.279 34.615 0.00 0.00 0.00 2.57
1858 2798 5.630121 ACAGAACATTCATGGTAACCTTCA 58.370 37.500 0.00 0.00 0.00 3.02
1859 2799 6.431234 AGAACAGAACATTCATGGTAACCTTC 59.569 38.462 0.00 0.00 0.00 3.46
1860 2800 6.306987 AGAACAGAACATTCATGGTAACCTT 58.693 36.000 0.00 0.00 0.00 3.50
2050 3065 4.900635 TTTGTTTCTTGAGGCTTCACTC 57.099 40.909 0.00 0.00 37.99 3.51
2279 3394 2.279582 ACCTCTGTACAATTCGCTCG 57.720 50.000 0.00 0.00 0.00 5.03
2323 3438 5.049828 GGCTTTGTGTGCTAAAAATGAAGT 58.950 37.500 0.00 0.00 0.00 3.01
2529 3680 7.708752 CCTCTTTGATCTCCTACTATTGTTGTC 59.291 40.741 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.