Multiple sequence alignment - TraesCS5A01G335300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G335300 chr5A 100.000 3559 0 0 1 3559 544532831 544536389 0.000000e+00 6573
1 TraesCS5A01G335300 chr5A 100.000 40 0 0 2721 2760 544535498 544535537 1.370000e-09 75
2 TraesCS5A01G335300 chr5A 100.000 40 0 0 2668 2707 544535551 544535590 1.370000e-09 75
3 TraesCS5A01G335300 chr5D 94.409 1878 77 10 723 2584 428699631 428701496 0.000000e+00 2861
4 TraesCS5A01G335300 chr5D 84.541 1035 139 15 1537 2561 388872658 388871635 0.000000e+00 1005
5 TraesCS5A01G335300 chr5D 89.806 412 34 6 2719 3126 428704563 428704970 4.070000e-144 521
6 TraesCS5A01G335300 chr5D 87.443 438 43 2 1040 1477 388873172 388872747 8.880000e-136 494
7 TraesCS5A01G335300 chr5D 78.740 254 44 10 1058 1306 507769046 507768798 1.020000e-35 161
8 TraesCS5A01G335300 chr5B 94.111 1902 60 16 677 2561 517852118 517853984 0.000000e+00 2844
9 TraesCS5A01G335300 chr5B 84.429 1034 142 14 1537 2561 467371101 467370078 0.000000e+00 1000
10 TraesCS5A01G335300 chr5B 84.808 520 40 19 2719 3235 517854451 517854934 1.490000e-133 486
11 TraesCS5A01G335300 chr5B 76.772 254 48 10 1058 1306 638304528 638304281 8.020000e-27 132
12 TraesCS5A01G335300 chr7D 82.963 1532 184 50 1049 2554 634920415 634918935 0.000000e+00 1312
13 TraesCS5A01G335300 chr7D 88.889 324 33 3 3238 3559 576645031 576644709 2.570000e-106 396
14 TraesCS5A01G335300 chr7A 81.213 1533 190 50 1049 2549 730723134 730721668 0.000000e+00 1146
15 TraesCS5A01G335300 chr7A 95.186 644 28 3 2 644 33144582 33145223 0.000000e+00 1014
16 TraesCS5A01G335300 chr1A 96.749 646 20 1 1 645 342587781 342588426 0.000000e+00 1075
17 TraesCS5A01G335300 chr1A 89.815 324 30 3 3238 3559 575231906 575231584 2.560000e-111 412
18 TraesCS5A01G335300 chr3A 96.130 646 24 1 1 645 505741992 505742637 0.000000e+00 1053
19 TraesCS5A01G335300 chr3A 92.857 644 41 5 1 642 49554604 49553964 0.000000e+00 929
20 TraesCS5A01G335300 chr3A 87.982 649 62 8 1 642 676845150 676845789 0.000000e+00 752
21 TraesCS5A01G335300 chr7B 83.813 1007 135 25 1535 2528 741226991 741227982 0.000000e+00 931
22 TraesCS5A01G335300 chr7B 82.199 764 107 22 1769 2522 741261807 741261063 6.480000e-177 630
23 TraesCS5A01G335300 chr1D 90.462 650 51 9 1 642 30803698 30803052 0.000000e+00 846
24 TraesCS5A01G335300 chr1D 89.815 648 55 9 3 642 30907292 30906648 0.000000e+00 821
25 TraesCS5A01G335300 chr1D 88.889 324 32 4 3238 3559 444890196 444890517 2.570000e-106 396
26 TraesCS5A01G335300 chr6A 87.538 650 64 9 1 642 71520314 71520954 0.000000e+00 736
27 TraesCS5A01G335300 chr6A 89.538 325 31 3 3237 3559 213868330 213868007 3.310000e-110 409
28 TraesCS5A01G335300 chr1B 86.562 640 74 10 9 640 522726824 522726189 0.000000e+00 695
29 TraesCS5A01G335300 chr3B 88.589 333 35 2 3229 3559 349939222 349938891 5.530000e-108 401
30 TraesCS5A01G335300 chr6D 88.889 324 35 1 3237 3559 147887410 147887733 7.160000e-107 398
31 TraesCS5A01G335300 chr2D 88.889 324 35 1 3237 3559 20062333 20062656 7.160000e-107 398
32 TraesCS5A01G335300 chr2D 88.889 324 34 1 3238 3559 425744798 425744475 7.160000e-107 398
33 TraesCS5A01G335300 chr4B 88.650 326 36 1 3235 3559 406324771 406325096 2.570000e-106 396
34 TraesCS5A01G335300 chr4B 75.227 331 70 9 1043 1367 28306994 28306670 2.860000e-31 147
35 TraesCS5A01G335300 chr4D 76.435 331 69 7 1041 1367 16369861 16369536 1.700000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G335300 chr5A 544532831 544536389 3558 False 2241.0 6573 100.0000 1 3559 3 chr5A.!!$F1 3558
1 TraesCS5A01G335300 chr5D 428699631 428704970 5339 False 1691.0 2861 92.1075 723 3126 2 chr5D.!!$F1 2403
2 TraesCS5A01G335300 chr5D 388871635 388873172 1537 True 749.5 1005 85.9920 1040 2561 2 chr5D.!!$R2 1521
3 TraesCS5A01G335300 chr5B 517852118 517854934 2816 False 1665.0 2844 89.4595 677 3235 2 chr5B.!!$F1 2558
4 TraesCS5A01G335300 chr5B 467370078 467371101 1023 True 1000.0 1000 84.4290 1537 2561 1 chr5B.!!$R1 1024
5 TraesCS5A01G335300 chr7D 634918935 634920415 1480 True 1312.0 1312 82.9630 1049 2554 1 chr7D.!!$R2 1505
6 TraesCS5A01G335300 chr7A 730721668 730723134 1466 True 1146.0 1146 81.2130 1049 2549 1 chr7A.!!$R1 1500
7 TraesCS5A01G335300 chr7A 33144582 33145223 641 False 1014.0 1014 95.1860 2 644 1 chr7A.!!$F1 642
8 TraesCS5A01G335300 chr1A 342587781 342588426 645 False 1075.0 1075 96.7490 1 645 1 chr1A.!!$F1 644
9 TraesCS5A01G335300 chr3A 505741992 505742637 645 False 1053.0 1053 96.1300 1 645 1 chr3A.!!$F1 644
10 TraesCS5A01G335300 chr3A 49553964 49554604 640 True 929.0 929 92.8570 1 642 1 chr3A.!!$R1 641
11 TraesCS5A01G335300 chr3A 676845150 676845789 639 False 752.0 752 87.9820 1 642 1 chr3A.!!$F2 641
12 TraesCS5A01G335300 chr7B 741226991 741227982 991 False 931.0 931 83.8130 1535 2528 1 chr7B.!!$F1 993
13 TraesCS5A01G335300 chr7B 741261063 741261807 744 True 630.0 630 82.1990 1769 2522 1 chr7B.!!$R1 753
14 TraesCS5A01G335300 chr1D 30803052 30803698 646 True 846.0 846 90.4620 1 642 1 chr1D.!!$R1 641
15 TraesCS5A01G335300 chr1D 30906648 30907292 644 True 821.0 821 89.8150 3 642 1 chr1D.!!$R2 639
16 TraesCS5A01G335300 chr6A 71520314 71520954 640 False 736.0 736 87.5380 1 642 1 chr6A.!!$F1 641
17 TraesCS5A01G335300 chr1B 522726189 522726824 635 True 695.0 695 86.5620 9 640 1 chr1B.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 793 0.398318 CTCTCCCCGATTCCATTCCC 59.602 60.0 0.0 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2753 5885 0.107703 GGCATCCTCGACACAATGGA 60.108 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 66 0.583438 CGCACTTGATAGGATTGCCG 59.417 55.000 0.00 0.00 39.96 5.69
260 265 1.078848 GACGGAGGCTGCACATCTT 60.079 57.895 6.86 0.00 0.00 2.40
526 538 3.326210 GCGCTCTCTGATTCGCCG 61.326 66.667 0.00 0.00 41.53 6.46
645 659 6.147985 GGACTCCTAGTGCTTTTAACTCTTTG 59.852 42.308 0.00 0.00 33.44 2.77
646 660 6.827727 ACTCCTAGTGCTTTTAACTCTTTGA 58.172 36.000 0.00 0.00 0.00 2.69
647 661 7.280356 ACTCCTAGTGCTTTTAACTCTTTGAA 58.720 34.615 0.00 0.00 0.00 2.69
648 662 7.773690 ACTCCTAGTGCTTTTAACTCTTTGAAA 59.226 33.333 0.00 0.00 0.00 2.69
649 663 8.514330 TCCTAGTGCTTTTAACTCTTTGAAAA 57.486 30.769 0.00 0.00 0.00 2.29
650 664 8.621286 TCCTAGTGCTTTTAACTCTTTGAAAAG 58.379 33.333 0.00 0.00 41.19 2.27
651 665 8.621286 CCTAGTGCTTTTAACTCTTTGAAAAGA 58.379 33.333 9.82 5.43 40.89 2.52
654 668 9.358872 AGTGCTTTTAACTCTTTGAAAAGAAAG 57.641 29.630 9.82 7.96 43.84 2.62
655 669 8.595533 GTGCTTTTAACTCTTTGAAAAGAAAGG 58.404 33.333 9.82 1.18 43.84 3.11
656 670 8.311109 TGCTTTTAACTCTTTGAAAAGAAAGGT 58.689 29.630 9.82 0.00 43.84 3.50
657 671 9.151471 GCTTTTAACTCTTTGAAAAGAAAGGTT 57.849 29.630 9.82 9.55 43.84 3.50
659 673 8.905103 TTTAACTCTTTGAAAAGAAAGGTTCG 57.095 30.769 10.45 0.42 43.84 3.95
660 674 4.921547 ACTCTTTGAAAAGAAAGGTTCGC 58.078 39.130 6.92 0.00 43.84 4.70
661 675 4.202020 ACTCTTTGAAAAGAAAGGTTCGCC 60.202 41.667 6.92 0.00 43.84 5.54
662 676 3.951680 TCTTTGAAAAGAAAGGTTCGCCT 59.048 39.130 3.00 0.00 43.97 5.52
663 677 4.036380 TCTTTGAAAAGAAAGGTTCGCCTC 59.964 41.667 3.00 0.00 42.01 4.70
664 678 4.793028 CTTTGAAAAGAAAGGTTCGCCTCC 60.793 45.833 0.00 0.00 41.84 4.30
665 679 7.730358 CTTTGAAAAGAAAGGTTCGCCTCCC 62.730 48.000 0.00 0.00 41.84 4.30
670 684 3.900888 AGGTTCGCCTCCCAAGAA 58.099 55.556 0.00 0.00 46.86 2.52
671 685 2.151369 AGGTTCGCCTCCCAAGAAA 58.849 52.632 0.00 0.00 46.86 2.52
672 686 0.476771 AGGTTCGCCTCCCAAGAAAA 59.523 50.000 0.00 0.00 46.86 2.29
673 687 1.133606 AGGTTCGCCTCCCAAGAAAAA 60.134 47.619 0.00 0.00 46.86 1.94
674 688 1.000607 GGTTCGCCTCCCAAGAAAAAC 60.001 52.381 0.00 0.00 0.00 2.43
675 689 0.948678 TTCGCCTCCCAAGAAAAACG 59.051 50.000 0.00 0.00 0.00 3.60
686 700 1.949465 AGAAAAACGGACGACTGCTT 58.051 45.000 0.00 0.00 0.00 3.91
687 701 1.597663 AGAAAAACGGACGACTGCTTG 59.402 47.619 0.00 0.00 0.00 4.01
731 745 9.869757 TCTCAAGAAACAATAAACATATCTCGA 57.130 29.630 0.00 0.00 0.00 4.04
735 749 9.653287 AAGAAACAATAAACATATCTCGAGTCA 57.347 29.630 13.13 1.47 0.00 3.41
779 793 0.398318 CTCTCCCCGATTCCATTCCC 59.602 60.000 0.00 0.00 0.00 3.97
790 804 1.709578 TCCATTCCCATCTCTCTCCG 58.290 55.000 0.00 0.00 0.00 4.63
924 948 2.357517 CGTCTGTGCACTGGGGAC 60.358 66.667 21.80 18.78 38.51 4.46
945 969 1.738099 ACTCCACGCTTGCGATGAC 60.738 57.895 22.03 0.00 0.00 3.06
959 983 1.914051 CGATGACGTAGCTCAGTTGTG 59.086 52.381 0.00 0.00 34.56 3.33
1387 1420 2.766651 GCGGGGATGGTGAGGGTA 60.767 66.667 0.00 0.00 0.00 3.69
1525 1576 1.177256 GGTCATGGCATGGCTCCATC 61.177 60.000 29.12 10.51 42.11 3.51
1858 1971 1.528542 CCCTCATCGCCGACCTCTA 60.529 63.158 0.00 0.00 0.00 2.43
1859 1972 0.896019 CCCTCATCGCCGACCTCTAT 60.896 60.000 0.00 0.00 0.00 1.98
2522 2677 0.108615 CCAAGCAGGAGGAGTACGTG 60.109 60.000 0.00 0.00 41.22 4.49
2584 2751 2.828520 CAGTTCTGTTCAGCCTCTAGGA 59.171 50.000 0.00 0.00 37.39 2.94
2585 2752 3.450457 CAGTTCTGTTCAGCCTCTAGGAT 59.550 47.826 0.00 0.00 37.39 3.24
2607 2808 1.664649 CTGGCGCTCGTGTCTTCAA 60.665 57.895 7.64 0.00 0.00 2.69
2654 2855 3.951775 TTTTTGCGCTGGAACCAATAT 57.048 38.095 9.73 0.00 0.00 1.28
2655 2856 3.502191 TTTTGCGCTGGAACCAATATC 57.498 42.857 9.73 0.00 0.00 1.63
2656 2857 2.121291 TTGCGCTGGAACCAATATCA 57.879 45.000 9.73 0.00 0.00 2.15
2657 2858 2.346766 TGCGCTGGAACCAATATCAT 57.653 45.000 9.73 0.00 0.00 2.45
2670 2871 8.819974 GGAACCAATATCATAGTTGCAAATTTG 58.180 33.333 14.03 14.03 31.66 2.32
2679 2880 4.277239 GCAAATTTGCGGGGGTTC 57.723 55.556 26.15 0.01 45.11 3.62
2680 2881 1.369321 GCAAATTTGCGGGGGTTCA 59.631 52.632 26.15 0.00 45.11 3.18
2681 2882 0.948623 GCAAATTTGCGGGGGTTCAC 60.949 55.000 26.15 0.00 45.11 3.18
2682 2883 0.320334 CAAATTTGCGGGGGTTCACC 60.320 55.000 5.01 0.00 39.11 4.02
2696 5757 2.358125 CACCCATTGTCGCCGTCA 60.358 61.111 0.00 0.00 0.00 4.35
2699 5760 1.209127 CCCATTGTCGCCGTCAAAC 59.791 57.895 0.20 0.00 0.00 2.93
2702 5814 0.165944 CATTGTCGCCGTCAAACTCC 59.834 55.000 0.20 0.00 0.00 3.85
2710 5822 2.476185 CGCCGTCAAACTCCATTGATTC 60.476 50.000 0.00 0.00 41.09 2.52
2721 5853 1.378514 ATTGATTCCGGCCGTGCTT 60.379 52.632 26.12 5.52 0.00 3.91
2734 5866 2.909965 TGCTTTGCGGGGGTTCAC 60.910 61.111 0.00 0.00 0.00 3.18
2735 5867 3.680786 GCTTTGCGGGGGTTCACC 61.681 66.667 0.00 0.00 39.11 4.02
2753 5885 1.234615 CCCATTGTCGCCGTCAAACT 61.235 55.000 0.20 0.00 0.00 2.66
2760 5892 0.250124 TCGCCGTCAAACTCCATTGT 60.250 50.000 0.00 0.00 0.00 2.71
2810 5942 4.695231 CCGCTTCGGTCGTCACGT 62.695 66.667 0.00 0.00 42.73 4.49
2835 5967 2.178273 CCGTCGAGATCACGTGCA 59.822 61.111 11.67 0.00 35.39 4.57
2852 5984 1.898574 CAAGGGCAAGCGGAAGTGT 60.899 57.895 0.00 0.00 0.00 3.55
2854 5986 1.455383 AAGGGCAAGCGGAAGTGTTG 61.455 55.000 0.00 0.00 0.00 3.33
2856 5988 2.193536 GGCAAGCGGAAGTGTTGGT 61.194 57.895 0.00 0.00 0.00 3.67
2857 5989 0.887387 GGCAAGCGGAAGTGTTGGTA 60.887 55.000 0.00 0.00 0.00 3.25
2858 5990 1.165270 GCAAGCGGAAGTGTTGGTAT 58.835 50.000 0.00 0.00 0.00 2.73
2862 5994 4.226761 CAAGCGGAAGTGTTGGTATTTTC 58.773 43.478 0.00 0.00 0.00 2.29
2863 5995 3.482436 AGCGGAAGTGTTGGTATTTTCA 58.518 40.909 0.00 0.00 0.00 2.69
2868 6000 5.643777 CGGAAGTGTTGGTATTTTCAGAGAT 59.356 40.000 0.00 0.00 0.00 2.75
2869 6001 6.402550 CGGAAGTGTTGGTATTTTCAGAGATG 60.403 42.308 0.00 0.00 0.00 2.90
2951 6085 1.826385 CTCAACTTAGGCAACCCCTG 58.174 55.000 0.00 0.00 45.91 4.45
2964 6099 0.251608 ACCCCTGGCCAATGTACAAC 60.252 55.000 7.01 0.00 0.00 3.32
2969 6104 0.536233 TGGCCAATGTACAACGCACT 60.536 50.000 0.61 0.00 0.00 4.40
2987 6122 1.457643 TGCCGAGGCTAGGTATGCT 60.458 57.895 15.41 0.00 42.51 3.79
2996 6131 6.037098 CGAGGCTAGGTATGCTTTATACATC 58.963 44.000 0.00 0.00 42.85 3.06
3113 6248 4.424842 AGAGGAAGACAAGAATCACCTCT 58.575 43.478 0.00 0.00 43.52 3.69
3127 6262 0.684479 ACCTCTCAGTATCAGCGCCA 60.684 55.000 2.29 0.00 0.00 5.69
3238 6373 9.924650 AACTTCGCCTACTAGTATTTATAATGG 57.075 33.333 2.33 0.00 0.00 3.16
3239 6374 9.305555 ACTTCGCCTACTAGTATTTATAATGGA 57.694 33.333 2.33 0.00 0.00 3.41
3240 6375 9.570488 CTTCGCCTACTAGTATTTATAATGGAC 57.430 37.037 2.33 0.00 0.00 4.02
3241 6376 7.755591 TCGCCTACTAGTATTTATAATGGACG 58.244 38.462 2.33 6.96 0.00 4.79
3242 6377 7.607607 TCGCCTACTAGTATTTATAATGGACGA 59.392 37.037 2.33 8.86 0.00 4.20
3243 6378 8.404000 CGCCTACTAGTATTTATAATGGACGAT 58.596 37.037 2.33 0.00 0.00 3.73
3244 6379 9.517609 GCCTACTAGTATTTATAATGGACGATG 57.482 37.037 2.33 0.00 0.00 3.84
3254 6389 9.996554 ATTTATAATGGACGATGATAACTGTCA 57.003 29.630 0.00 0.00 33.04 3.58
3255 6390 8.812147 TTATAATGGACGATGATAACTGTCAC 57.188 34.615 0.00 0.00 33.04 3.67
3256 6391 4.736126 ATGGACGATGATAACTGTCACA 57.264 40.909 0.00 0.00 33.04 3.58
3257 6392 3.845178 TGGACGATGATAACTGTCACAC 58.155 45.455 0.00 0.00 33.04 3.82
3258 6393 2.852413 GGACGATGATAACTGTCACACG 59.148 50.000 0.00 0.00 37.31 4.49
3259 6394 3.499048 GACGATGATAACTGTCACACGT 58.501 45.455 9.10 9.10 42.54 4.49
3260 6395 3.242518 ACGATGATAACTGTCACACGTG 58.757 45.455 15.48 15.48 40.33 4.49
3261 6396 3.242518 CGATGATAACTGTCACACGTGT 58.757 45.455 17.22 17.22 31.46 4.49
3262 6397 3.059438 CGATGATAACTGTCACACGTGTG 59.941 47.826 37.04 37.04 46.91 3.82
3272 6407 3.349088 ACACGTGTGAGCGTTAACA 57.651 47.368 22.71 0.00 43.83 2.41
3273 6408 1.205657 ACACGTGTGAGCGTTAACAG 58.794 50.000 22.71 0.00 43.83 3.16
3274 6409 1.202325 ACACGTGTGAGCGTTAACAGA 60.202 47.619 22.71 0.00 43.83 3.41
3275 6410 2.058798 CACGTGTGAGCGTTAACAGAT 58.941 47.619 7.58 0.00 43.83 2.90
3276 6411 2.090658 CACGTGTGAGCGTTAACAGATC 59.909 50.000 7.58 7.48 43.83 2.75
3277 6412 2.030185 ACGTGTGAGCGTTAACAGATCT 60.030 45.455 6.39 0.00 43.04 2.75
3278 6413 2.342651 CGTGTGAGCGTTAACAGATCTG 59.657 50.000 21.37 21.37 0.00 2.90
3279 6414 2.668457 GTGTGAGCGTTAACAGATCTGG 59.332 50.000 26.08 9.42 34.19 3.86
3280 6415 2.299013 TGTGAGCGTTAACAGATCTGGT 59.701 45.455 26.08 22.82 34.19 4.00
3281 6416 2.924290 GTGAGCGTTAACAGATCTGGTC 59.076 50.000 26.08 13.21 34.19 4.02
3282 6417 2.560981 TGAGCGTTAACAGATCTGGTCA 59.439 45.455 26.08 15.54 34.19 4.02
3283 6418 2.924290 GAGCGTTAACAGATCTGGTCAC 59.076 50.000 26.08 19.93 34.19 3.67
3284 6419 2.299013 AGCGTTAACAGATCTGGTCACA 59.701 45.455 26.08 2.29 34.19 3.58
3285 6420 3.055819 AGCGTTAACAGATCTGGTCACAT 60.056 43.478 26.08 10.35 34.19 3.21
3286 6421 3.062639 GCGTTAACAGATCTGGTCACATG 59.937 47.826 26.08 13.62 34.19 3.21
3287 6422 4.245660 CGTTAACAGATCTGGTCACATGT 58.754 43.478 26.08 0.00 34.19 3.21
3288 6423 4.690748 CGTTAACAGATCTGGTCACATGTT 59.309 41.667 26.08 12.01 35.28 2.71
3289 6424 5.179368 CGTTAACAGATCTGGTCACATGTTT 59.821 40.000 26.08 10.59 33.31 2.83
3290 6425 6.293407 CGTTAACAGATCTGGTCACATGTTTT 60.293 38.462 26.08 9.91 33.31 2.43
3291 6426 5.443185 AACAGATCTGGTCACATGTTTTG 57.557 39.130 26.08 0.00 34.19 2.44
3292 6427 4.464008 ACAGATCTGGTCACATGTTTTGT 58.536 39.130 26.08 0.00 35.03 2.83
3293 6428 4.276678 ACAGATCTGGTCACATGTTTTGTG 59.723 41.667 26.08 0.00 45.01 3.33
3294 6429 6.152103 ACAGATCTGGTCACATGTTTTGTGT 61.152 40.000 26.08 0.00 44.49 3.72
3295 6430 8.116848 ACAGATCTGGTCACATGTTTTGTGTG 62.117 42.308 26.08 0.03 44.49 3.82
3304 6439 5.499139 ACATGTTTTGTGTGGTGTCTAAG 57.501 39.130 0.00 0.00 37.11 2.18
3305 6440 5.189928 ACATGTTTTGTGTGGTGTCTAAGA 58.810 37.500 0.00 0.00 37.11 2.10
3306 6441 5.296780 ACATGTTTTGTGTGGTGTCTAAGAG 59.703 40.000 0.00 0.00 37.11 2.85
3307 6442 4.196193 TGTTTTGTGTGGTGTCTAAGAGG 58.804 43.478 0.00 0.00 0.00 3.69
3308 6443 4.080807 TGTTTTGTGTGGTGTCTAAGAGGA 60.081 41.667 0.00 0.00 0.00 3.71
3309 6444 3.746045 TTGTGTGGTGTCTAAGAGGAC 57.254 47.619 0.00 0.00 36.81 3.85
3310 6445 1.968493 TGTGTGGTGTCTAAGAGGACC 59.032 52.381 0.00 0.00 35.54 4.46
3311 6446 1.968493 GTGTGGTGTCTAAGAGGACCA 59.032 52.381 0.00 0.00 36.10 4.02
3312 6447 2.028930 GTGTGGTGTCTAAGAGGACCAG 60.029 54.545 0.00 0.00 39.17 4.00
3313 6448 1.066787 GTGGTGTCTAAGAGGACCAGC 60.067 57.143 0.00 0.00 39.17 4.85
3314 6449 0.537653 GGTGTCTAAGAGGACCAGCC 59.462 60.000 0.00 0.00 35.54 4.85
3315 6450 0.537653 GTGTCTAAGAGGACCAGCCC 59.462 60.000 0.00 0.00 37.37 5.19
3316 6451 0.116342 TGTCTAAGAGGACCAGCCCA 59.884 55.000 0.00 0.00 37.37 5.36
3317 6452 0.537653 GTCTAAGAGGACCAGCCCAC 59.462 60.000 0.00 0.00 37.37 4.61
3318 6453 0.116342 TCTAAGAGGACCAGCCCACA 59.884 55.000 0.00 0.00 37.37 4.17
3319 6454 0.250513 CTAAGAGGACCAGCCCACAC 59.749 60.000 0.00 0.00 37.37 3.82
3320 6455 1.541310 TAAGAGGACCAGCCCACACG 61.541 60.000 0.00 0.00 37.37 4.49
3324 6459 4.947147 GACCAGCCCACACGCCAA 62.947 66.667 0.00 0.00 0.00 4.52
3338 6473 3.834726 CCAACGTGTGGGCAAGAA 58.165 55.556 8.40 0.00 44.64 2.52
3339 6474 2.111162 CCAACGTGTGGGCAAGAAA 58.889 52.632 8.40 0.00 44.64 2.52
3340 6475 0.457851 CCAACGTGTGGGCAAGAAAA 59.542 50.000 8.40 0.00 44.64 2.29
3341 6476 1.535860 CCAACGTGTGGGCAAGAAAAG 60.536 52.381 8.40 0.00 44.64 2.27
3342 6477 1.134175 CAACGTGTGGGCAAGAAAAGT 59.866 47.619 0.00 0.00 0.00 2.66
3343 6478 2.335316 ACGTGTGGGCAAGAAAAGTA 57.665 45.000 0.00 0.00 0.00 2.24
3344 6479 2.645802 ACGTGTGGGCAAGAAAAGTAA 58.354 42.857 0.00 0.00 0.00 2.24
3345 6480 3.219281 ACGTGTGGGCAAGAAAAGTAAT 58.781 40.909 0.00 0.00 0.00 1.89
3346 6481 3.004315 ACGTGTGGGCAAGAAAAGTAATG 59.996 43.478 0.00 0.00 0.00 1.90
3347 6482 3.004315 CGTGTGGGCAAGAAAAGTAATGT 59.996 43.478 0.00 0.00 0.00 2.71
3348 6483 4.499019 CGTGTGGGCAAGAAAAGTAATGTT 60.499 41.667 0.00 0.00 0.00 2.71
3349 6484 4.982295 GTGTGGGCAAGAAAAGTAATGTTC 59.018 41.667 0.00 0.00 0.00 3.18
3350 6485 4.646945 TGTGGGCAAGAAAAGTAATGTTCA 59.353 37.500 0.00 0.00 0.00 3.18
3351 6486 4.982295 GTGGGCAAGAAAAGTAATGTTCAC 59.018 41.667 0.00 0.00 0.00 3.18
3352 6487 4.646945 TGGGCAAGAAAAGTAATGTTCACA 59.353 37.500 0.00 0.00 0.00 3.58
3353 6488 4.982295 GGGCAAGAAAAGTAATGTTCACAC 59.018 41.667 0.00 0.00 0.00 3.82
3354 6489 4.675114 GGCAAGAAAAGTAATGTTCACACG 59.325 41.667 0.00 0.00 0.00 4.49
3355 6490 4.146443 GCAAGAAAAGTAATGTTCACACGC 59.854 41.667 0.00 0.00 0.00 5.34
3356 6491 4.483476 AGAAAAGTAATGTTCACACGCC 57.517 40.909 0.00 0.00 0.00 5.68
3357 6492 4.134563 AGAAAAGTAATGTTCACACGCCT 58.865 39.130 0.00 0.00 0.00 5.52
3358 6493 4.578928 AGAAAAGTAATGTTCACACGCCTT 59.421 37.500 0.00 0.00 0.00 4.35
3359 6494 4.911514 AAAGTAATGTTCACACGCCTTT 57.088 36.364 0.00 0.00 0.00 3.11
3360 6495 4.911514 AAGTAATGTTCACACGCCTTTT 57.088 36.364 0.00 0.00 0.00 2.27
3361 6496 4.911514 AGTAATGTTCACACGCCTTTTT 57.088 36.364 0.00 0.00 0.00 1.94
3376 6511 2.032987 TTTTTCCCTCGCGGTCCC 59.967 61.111 6.13 0.00 0.00 4.46
3377 6512 2.522367 TTTTTCCCTCGCGGTCCCT 61.522 57.895 6.13 0.00 0.00 4.20
3378 6513 2.459202 TTTTTCCCTCGCGGTCCCTC 62.459 60.000 6.13 0.00 0.00 4.30
3379 6514 3.899545 TTTCCCTCGCGGTCCCTCT 62.900 63.158 6.13 0.00 0.00 3.69
3380 6515 4.816984 TCCCTCGCGGTCCCTCTC 62.817 72.222 6.13 0.00 0.00 3.20
3382 6517 3.827898 CCTCGCGGTCCCTCTCAC 61.828 72.222 6.13 0.00 0.00 3.51
3383 6518 3.062466 CTCGCGGTCCCTCTCACA 61.062 66.667 6.13 0.00 0.00 3.58
3384 6519 3.343788 CTCGCGGTCCCTCTCACAC 62.344 68.421 6.13 0.00 0.00 3.82
3385 6520 4.778415 CGCGGTCCCTCTCACACG 62.778 72.222 0.00 0.00 0.00 4.49
3387 6522 4.436998 CGGTCCCTCTCACACGCC 62.437 72.222 0.00 0.00 0.00 5.68
3388 6523 2.997897 GGTCCCTCTCACACGCCT 60.998 66.667 0.00 0.00 0.00 5.52
3389 6524 1.681327 GGTCCCTCTCACACGCCTA 60.681 63.158 0.00 0.00 0.00 3.93
3390 6525 1.511768 GTCCCTCTCACACGCCTAC 59.488 63.158 0.00 0.00 0.00 3.18
3406 6541 2.980568 CCTACGTGTGGGCAAAATAGA 58.019 47.619 0.00 0.00 0.00 1.98
3407 6542 3.541632 CCTACGTGTGGGCAAAATAGAT 58.458 45.455 0.00 0.00 0.00 1.98
3408 6543 4.699637 CCTACGTGTGGGCAAAATAGATA 58.300 43.478 0.00 0.00 0.00 1.98
3409 6544 5.120399 CCTACGTGTGGGCAAAATAGATAA 58.880 41.667 0.00 0.00 0.00 1.75
3410 6545 4.957759 ACGTGTGGGCAAAATAGATAAC 57.042 40.909 0.00 0.00 0.00 1.89
3411 6546 4.328536 ACGTGTGGGCAAAATAGATAACA 58.671 39.130 0.00 0.00 0.00 2.41
3412 6547 4.155280 ACGTGTGGGCAAAATAGATAACAC 59.845 41.667 0.00 0.00 34.70 3.32
3413 6548 4.394920 CGTGTGGGCAAAATAGATAACACT 59.605 41.667 0.00 0.00 35.63 3.55
3414 6549 5.447279 CGTGTGGGCAAAATAGATAACACTC 60.447 44.000 0.00 0.00 35.63 3.51
3415 6550 5.414454 GTGTGGGCAAAATAGATAACACTCA 59.586 40.000 0.00 0.00 35.08 3.41
3416 6551 5.414454 TGTGGGCAAAATAGATAACACTCAC 59.586 40.000 0.00 0.00 0.00 3.51
3417 6552 5.414454 GTGGGCAAAATAGATAACACTCACA 59.586 40.000 0.00 0.00 0.00 3.58
3418 6553 5.414454 TGGGCAAAATAGATAACACTCACAC 59.586 40.000 0.00 0.00 0.00 3.82
3419 6554 5.447279 GGGCAAAATAGATAACACTCACACG 60.447 44.000 0.00 0.00 0.00 4.49
3420 6555 5.350365 GGCAAAATAGATAACACTCACACGA 59.650 40.000 0.00 0.00 0.00 4.35
3421 6556 6.241385 GCAAAATAGATAACACTCACACGAC 58.759 40.000 0.00 0.00 0.00 4.34
3422 6557 6.672357 GCAAAATAGATAACACTCACACGACC 60.672 42.308 0.00 0.00 0.00 4.79
3423 6558 5.916661 AATAGATAACACTCACACGACCT 57.083 39.130 0.00 0.00 0.00 3.85
3424 6559 3.851976 AGATAACACTCACACGACCTC 57.148 47.619 0.00 0.00 0.00 3.85
3425 6560 3.422796 AGATAACACTCACACGACCTCT 58.577 45.455 0.00 0.00 0.00 3.69
3426 6561 3.440872 AGATAACACTCACACGACCTCTC 59.559 47.826 0.00 0.00 0.00 3.20
3427 6562 1.693627 AACACTCACACGACCTCTCT 58.306 50.000 0.00 0.00 0.00 3.10
3428 6563 1.240256 ACACTCACACGACCTCTCTC 58.760 55.000 0.00 0.00 0.00 3.20
3429 6564 1.239347 CACTCACACGACCTCTCTCA 58.761 55.000 0.00 0.00 0.00 3.27
3430 6565 1.198867 CACTCACACGACCTCTCTCAG 59.801 57.143 0.00 0.00 0.00 3.35
3431 6566 0.170116 CTCACACGACCTCTCTCAGC 59.830 60.000 0.00 0.00 0.00 4.26
3432 6567 1.214062 CACACGACCTCTCTCAGCC 59.786 63.158 0.00 0.00 0.00 4.85
3433 6568 1.228583 ACACGACCTCTCTCAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
3434 6569 1.214062 CACGACCTCTCTCAGCCAC 59.786 63.158 0.00 0.00 0.00 5.01
3435 6570 1.979693 ACGACCTCTCTCAGCCACC 60.980 63.158 0.00 0.00 0.00 4.61
3436 6571 1.680651 CGACCTCTCTCAGCCACCT 60.681 63.158 0.00 0.00 0.00 4.00
3437 6572 0.394488 CGACCTCTCTCAGCCACCTA 60.394 60.000 0.00 0.00 0.00 3.08
3438 6573 1.107945 GACCTCTCTCAGCCACCTAC 58.892 60.000 0.00 0.00 0.00 3.18
3439 6574 0.324830 ACCTCTCTCAGCCACCTACC 60.325 60.000 0.00 0.00 0.00 3.18
3440 6575 0.032615 CCTCTCTCAGCCACCTACCT 60.033 60.000 0.00 0.00 0.00 3.08
3441 6576 1.398692 CTCTCTCAGCCACCTACCTC 58.601 60.000 0.00 0.00 0.00 3.85
3442 6577 0.704664 TCTCTCAGCCACCTACCTCA 59.295 55.000 0.00 0.00 0.00 3.86
3443 6578 0.820871 CTCTCAGCCACCTACCTCAC 59.179 60.000 0.00 0.00 0.00 3.51
3444 6579 0.965866 TCTCAGCCACCTACCTCACG 60.966 60.000 0.00 0.00 0.00 4.35
3445 6580 1.949847 CTCAGCCACCTACCTCACGG 61.950 65.000 0.00 0.00 0.00 4.94
3447 6582 1.982938 AGCCACCTACCTCACGGTC 60.983 63.158 0.00 0.00 44.21 4.79
3448 6583 3.015312 GCCACCTACCTCACGGTCC 62.015 68.421 0.00 0.00 44.21 4.46
3449 6584 2.356780 CCACCTACCTCACGGTCCC 61.357 68.421 0.00 0.00 44.21 4.46
3450 6585 2.362120 ACCTACCTCACGGTCCCG 60.362 66.667 3.76 3.76 44.21 5.14
3451 6586 3.834799 CCTACCTCACGGTCCCGC 61.835 72.222 5.47 0.00 44.21 6.13
3452 6587 3.066190 CTACCTCACGGTCCCGCA 61.066 66.667 5.47 0.00 44.21 5.69
3453 6588 3.352338 CTACCTCACGGTCCCGCAC 62.352 68.421 5.47 0.00 44.21 5.34
3469 6604 4.760047 ACGCCCCGCATGACAGTC 62.760 66.667 0.00 0.00 0.00 3.51
3470 6605 4.758251 CGCCCCGCATGACAGTCA 62.758 66.667 5.50 5.50 0.00 3.41
3471 6606 3.127533 GCCCCGCATGACAGTCAC 61.128 66.667 5.05 0.00 0.00 3.67
3472 6607 2.436646 CCCCGCATGACAGTCACC 60.437 66.667 5.05 0.00 0.00 4.02
3473 6608 2.347114 CCCGCATGACAGTCACCA 59.653 61.111 5.05 0.00 0.00 4.17
3474 6609 2.034879 CCCGCATGACAGTCACCAC 61.035 63.158 5.05 0.00 0.00 4.16
3475 6610 2.382746 CCGCATGACAGTCACCACG 61.383 63.158 5.05 9.83 0.00 4.94
3476 6611 2.863153 GCATGACAGTCACCACGC 59.137 61.111 5.05 2.89 0.00 5.34
3477 6612 3.015293 GCATGACAGTCACCACGCG 62.015 63.158 5.05 3.53 0.00 6.01
3478 6613 1.664649 CATGACAGTCACCACGCGT 60.665 57.895 5.58 5.58 0.00 6.01
3479 6614 1.372997 ATGACAGTCACCACGCGTC 60.373 57.895 9.86 0.00 32.97 5.19
3480 6615 2.733593 GACAGTCACCACGCGTCC 60.734 66.667 9.86 0.00 0.00 4.79
3481 6616 4.295119 ACAGTCACCACGCGTCCC 62.295 66.667 9.86 0.00 0.00 4.46
3494 6629 3.443045 GTCCCCGCAGTTGCCATG 61.443 66.667 0.00 0.00 37.91 3.66
3495 6630 3.645660 TCCCCGCAGTTGCCATGA 61.646 61.111 0.00 0.00 37.91 3.07
3496 6631 2.440796 CCCCGCAGTTGCCATGAT 60.441 61.111 0.00 0.00 37.91 2.45
3497 6632 2.484062 CCCCGCAGTTGCCATGATC 61.484 63.158 0.00 0.00 37.91 2.92
3498 6633 2.484062 CCCGCAGTTGCCATGATCC 61.484 63.158 0.00 0.00 37.91 3.36
3499 6634 2.711311 CGCAGTTGCCATGATCCG 59.289 61.111 0.00 0.00 37.91 4.18
3500 6635 1.815003 CGCAGTTGCCATGATCCGA 60.815 57.895 0.00 0.00 37.91 4.55
3501 6636 1.368345 CGCAGTTGCCATGATCCGAA 61.368 55.000 0.00 0.00 37.91 4.30
3502 6637 0.099436 GCAGTTGCCATGATCCGAAC 59.901 55.000 0.00 0.00 34.31 3.95
3503 6638 0.734889 CAGTTGCCATGATCCGAACC 59.265 55.000 0.00 0.00 0.00 3.62
3504 6639 0.394352 AGTTGCCATGATCCGAACCC 60.394 55.000 0.00 0.00 0.00 4.11
3505 6640 0.394352 GTTGCCATGATCCGAACCCT 60.394 55.000 0.00 0.00 0.00 4.34
3506 6641 0.107214 TTGCCATGATCCGAACCCTC 60.107 55.000 0.00 0.00 0.00 4.30
3507 6642 0.982852 TGCCATGATCCGAACCCTCT 60.983 55.000 0.00 0.00 0.00 3.69
3508 6643 0.181350 GCCATGATCCGAACCCTCTT 59.819 55.000 0.00 0.00 0.00 2.85
3509 6644 1.408822 GCCATGATCCGAACCCTCTTT 60.409 52.381 0.00 0.00 0.00 2.52
3510 6645 2.158813 GCCATGATCCGAACCCTCTTTA 60.159 50.000 0.00 0.00 0.00 1.85
3511 6646 3.684413 GCCATGATCCGAACCCTCTTTAA 60.684 47.826 0.00 0.00 0.00 1.52
3512 6647 4.718961 CCATGATCCGAACCCTCTTTAAT 58.281 43.478 0.00 0.00 0.00 1.40
3513 6648 4.516698 CCATGATCCGAACCCTCTTTAATG 59.483 45.833 0.00 0.00 0.00 1.90
3514 6649 4.837093 TGATCCGAACCCTCTTTAATGT 57.163 40.909 0.00 0.00 0.00 2.71
3515 6650 4.766375 TGATCCGAACCCTCTTTAATGTC 58.234 43.478 0.00 0.00 0.00 3.06
3516 6651 3.622166 TCCGAACCCTCTTTAATGTCC 57.378 47.619 0.00 0.00 0.00 4.02
3517 6652 2.093869 TCCGAACCCTCTTTAATGTCCG 60.094 50.000 0.00 0.00 0.00 4.79
3518 6653 2.354403 CCGAACCCTCTTTAATGTCCGT 60.354 50.000 0.00 0.00 0.00 4.69
3519 6654 3.332034 CGAACCCTCTTTAATGTCCGTT 58.668 45.455 0.00 0.00 0.00 4.44
3520 6655 3.749609 CGAACCCTCTTTAATGTCCGTTT 59.250 43.478 0.00 0.00 0.00 3.60
3521 6656 4.931002 CGAACCCTCTTTAATGTCCGTTTA 59.069 41.667 0.00 0.00 0.00 2.01
3522 6657 5.409214 CGAACCCTCTTTAATGTCCGTTTAA 59.591 40.000 0.00 0.00 0.00 1.52
3523 6658 6.093082 CGAACCCTCTTTAATGTCCGTTTAAT 59.907 38.462 0.00 0.00 0.00 1.40
3524 6659 7.361457 CGAACCCTCTTTAATGTCCGTTTAATT 60.361 37.037 0.00 0.00 0.00 1.40
3525 6660 7.153217 ACCCTCTTTAATGTCCGTTTAATTG 57.847 36.000 0.00 0.00 0.00 2.32
3526 6661 6.033966 CCCTCTTTAATGTCCGTTTAATTGC 58.966 40.000 0.00 0.00 0.00 3.56
3527 6662 6.349777 CCCTCTTTAATGTCCGTTTAATTGCA 60.350 38.462 0.00 0.00 0.00 4.08
3528 6663 6.747280 CCTCTTTAATGTCCGTTTAATTGCAG 59.253 38.462 0.00 0.00 0.00 4.41
3529 6664 7.209471 TCTTTAATGTCCGTTTAATTGCAGT 57.791 32.000 0.00 0.00 0.00 4.40
3530 6665 7.653647 TCTTTAATGTCCGTTTAATTGCAGTT 58.346 30.769 0.00 0.00 0.00 3.16
3531 6666 7.593273 TCTTTAATGTCCGTTTAATTGCAGTTG 59.407 33.333 4.47 0.00 0.00 3.16
3532 6667 3.006659 TGTCCGTTTAATTGCAGTTGC 57.993 42.857 4.47 0.00 42.50 4.17
3533 6668 2.287909 TGTCCGTTTAATTGCAGTTGCC 60.288 45.455 4.47 0.00 41.18 4.52
3534 6669 1.957177 TCCGTTTAATTGCAGTTGCCA 59.043 42.857 4.47 0.00 41.18 4.92
3535 6670 2.560542 TCCGTTTAATTGCAGTTGCCAT 59.439 40.909 4.47 0.00 41.18 4.40
3536 6671 2.667481 CCGTTTAATTGCAGTTGCCATG 59.333 45.455 4.47 0.00 41.18 3.66
3537 6672 3.316283 CGTTTAATTGCAGTTGCCATGT 58.684 40.909 4.47 0.00 41.18 3.21
3538 6673 3.740321 CGTTTAATTGCAGTTGCCATGTT 59.260 39.130 4.47 0.00 41.18 2.71
3539 6674 4.376210 CGTTTAATTGCAGTTGCCATGTTG 60.376 41.667 4.47 0.00 41.18 3.33
3540 6675 1.515081 AATTGCAGTTGCCATGTTGC 58.485 45.000 1.06 0.00 41.18 4.17
3541 6676 0.682852 ATTGCAGTTGCCATGTTGCT 59.317 45.000 1.06 0.00 41.18 3.91
3542 6677 0.249531 TTGCAGTTGCCATGTTGCTG 60.250 50.000 1.06 0.00 41.18 4.41
3543 6678 1.364901 GCAGTTGCCATGTTGCTGT 59.635 52.632 0.00 0.00 33.88 4.40
3544 6679 0.597568 GCAGTTGCCATGTTGCTGTA 59.402 50.000 0.00 0.00 33.88 2.74
3545 6680 1.666888 GCAGTTGCCATGTTGCTGTAC 60.667 52.381 0.00 0.00 33.88 2.90
3546 6681 1.881973 CAGTTGCCATGTTGCTGTACT 59.118 47.619 0.00 0.00 0.00 2.73
3547 6682 3.073678 CAGTTGCCATGTTGCTGTACTA 58.926 45.455 0.00 0.00 0.00 1.82
3548 6683 3.074412 AGTTGCCATGTTGCTGTACTAC 58.926 45.455 0.00 0.00 0.00 2.73
3549 6684 2.811431 GTTGCCATGTTGCTGTACTACA 59.189 45.455 0.00 0.00 38.39 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 66 1.328986 GTTGCTTCGATCTAGCCAAGC 59.671 52.381 12.46 0.00 41.43 4.01
251 256 1.005037 AGTTCCGCGAAGATGTGCA 60.005 52.632 8.23 0.00 0.00 4.57
526 538 2.819608 TCAAGATGTGCAAAACTAGCCC 59.180 45.455 0.00 0.00 0.00 5.19
596 609 6.595326 CCTACAACTTGCTCTCAATGTGATAA 59.405 38.462 0.00 0.00 30.58 1.75
654 668 1.000607 GTTTTTCTTGGGAGGCGAACC 60.001 52.381 0.00 0.00 0.00 3.62
655 669 1.334689 CGTTTTTCTTGGGAGGCGAAC 60.335 52.381 0.00 0.00 0.00 3.95
656 670 0.948678 CGTTTTTCTTGGGAGGCGAA 59.051 50.000 0.00 0.00 0.00 4.70
657 671 0.887387 CCGTTTTTCTTGGGAGGCGA 60.887 55.000 0.00 0.00 0.00 5.54
658 672 0.887387 TCCGTTTTTCTTGGGAGGCG 60.887 55.000 0.00 0.00 0.00 5.52
659 673 0.596577 GTCCGTTTTTCTTGGGAGGC 59.403 55.000 0.00 0.00 0.00 4.70
660 674 0.872388 CGTCCGTTTTTCTTGGGAGG 59.128 55.000 0.00 0.00 0.00 4.30
661 675 1.529865 GTCGTCCGTTTTTCTTGGGAG 59.470 52.381 0.00 0.00 0.00 4.30
662 676 1.139455 AGTCGTCCGTTTTTCTTGGGA 59.861 47.619 0.00 0.00 0.00 4.37
663 677 1.263217 CAGTCGTCCGTTTTTCTTGGG 59.737 52.381 0.00 0.00 0.00 4.12
664 678 1.333791 GCAGTCGTCCGTTTTTCTTGG 60.334 52.381 0.00 0.00 0.00 3.61
665 679 1.597663 AGCAGTCGTCCGTTTTTCTTG 59.402 47.619 0.00 0.00 0.00 3.02
666 680 1.949465 AGCAGTCGTCCGTTTTTCTT 58.051 45.000 0.00 0.00 0.00 2.52
667 681 1.597663 CAAGCAGTCGTCCGTTTTTCT 59.402 47.619 0.00 0.00 0.00 2.52
668 682 1.333791 CCAAGCAGTCGTCCGTTTTTC 60.334 52.381 0.00 0.00 0.00 2.29
669 683 0.661020 CCAAGCAGTCGTCCGTTTTT 59.339 50.000 0.00 0.00 0.00 1.94
670 684 0.463116 ACCAAGCAGTCGTCCGTTTT 60.463 50.000 0.00 0.00 0.00 2.43
671 685 0.390124 TACCAAGCAGTCGTCCGTTT 59.610 50.000 0.00 0.00 0.00 3.60
672 686 0.606604 ATACCAAGCAGTCGTCCGTT 59.393 50.000 0.00 0.00 0.00 4.44
673 687 0.108804 CATACCAAGCAGTCGTCCGT 60.109 55.000 0.00 0.00 0.00 4.69
674 688 0.172578 TCATACCAAGCAGTCGTCCG 59.827 55.000 0.00 0.00 0.00 4.79
675 689 1.927895 CTCATACCAAGCAGTCGTCC 58.072 55.000 0.00 0.00 0.00 4.79
711 725 8.050750 CGTGACTCGAGATATGTTTATTGTTTC 58.949 37.037 21.68 0.23 42.86 2.78
751 765 3.917760 CGGGGAGAGATGGGACGC 61.918 72.222 0.00 0.00 0.00 5.19
779 793 1.270274 CAGATCTGGCGGAGAGAGATG 59.730 57.143 15.38 0.00 32.80 2.90
924 948 1.446792 ATCGCAAGCGTGGAGTGAG 60.447 57.895 14.57 0.00 40.74 3.51
945 969 2.094659 CCGCCACAACTGAGCTACG 61.095 63.158 0.00 0.00 0.00 3.51
987 1012 2.274760 GCCATGGCCTCTGCTCTT 59.725 61.111 27.24 0.00 37.74 2.85
1369 1402 3.627332 TACCCTCACCATCCCCGCA 62.627 63.158 0.00 0.00 0.00 5.69
1377 1410 2.677524 CCCGTCGTACCCTCACCA 60.678 66.667 0.00 0.00 0.00 4.17
1380 1413 1.978617 GAACCCCGTCGTACCCTCA 60.979 63.158 0.00 0.00 0.00 3.86
1387 1420 4.675029 CTTGCCGAACCCCGTCGT 62.675 66.667 0.00 0.00 39.43 4.34
1685 1789 3.224324 TAGAGGCGGTGGGCGATC 61.224 66.667 0.00 0.00 44.92 3.69
1937 2077 2.745100 TCCTCGTCCTCGTCGTGG 60.745 66.667 7.02 7.02 41.38 4.94
1938 2078 1.740664 TCTCCTCGTCCTCGTCGTG 60.741 63.158 0.00 0.00 38.33 4.35
1939 2079 1.741032 GTCTCCTCGTCCTCGTCGT 60.741 63.158 0.00 0.00 38.33 4.34
1940 2080 2.462782 GGTCTCCTCGTCCTCGTCG 61.463 68.421 0.00 0.00 38.33 5.12
1941 2081 2.462782 CGGTCTCCTCGTCCTCGTC 61.463 68.421 0.00 0.00 38.33 4.20
1942 2082 2.436292 CGGTCTCCTCGTCCTCGT 60.436 66.667 0.00 0.00 38.33 4.18
2584 2751 4.687215 ACACGAGCGCCAGTGCAT 62.687 61.111 26.23 10.50 41.72 3.96
2634 2835 3.256879 TGATATTGGTTCCAGCGCAAAAA 59.743 39.130 11.47 0.00 0.00 1.94
2635 2836 2.822561 TGATATTGGTTCCAGCGCAAAA 59.177 40.909 11.47 0.00 0.00 2.44
2636 2837 2.441410 TGATATTGGTTCCAGCGCAAA 58.559 42.857 11.47 0.00 0.00 3.68
2637 2838 2.121291 TGATATTGGTTCCAGCGCAA 57.879 45.000 11.47 0.00 0.00 4.85
2638 2839 2.346766 ATGATATTGGTTCCAGCGCA 57.653 45.000 11.47 0.00 0.00 6.09
2639 2840 3.403038 ACTATGATATTGGTTCCAGCGC 58.597 45.455 0.00 0.00 0.00 5.92
2640 2841 4.319766 GCAACTATGATATTGGTTCCAGCG 60.320 45.833 0.00 0.00 0.00 5.18
2641 2842 4.580167 TGCAACTATGATATTGGTTCCAGC 59.420 41.667 0.00 0.00 0.00 4.85
2642 2843 6.698008 TTGCAACTATGATATTGGTTCCAG 57.302 37.500 0.00 0.00 0.00 3.86
2643 2844 7.658525 ATTTGCAACTATGATATTGGTTCCA 57.341 32.000 0.00 0.00 0.00 3.53
2644 2845 8.819974 CAAATTTGCAACTATGATATTGGTTCC 58.180 33.333 5.01 0.00 0.00 3.62
2675 2876 2.686816 CGGCGACAATGGGTGAACC 61.687 63.158 0.00 0.00 40.81 3.62
2676 2877 1.908066 GACGGCGACAATGGGTGAAC 61.908 60.000 16.62 0.00 0.00 3.18
2678 2879 2.047655 GACGGCGACAATGGGTGA 60.048 61.111 16.62 0.00 0.00 4.02
2679 2880 1.511318 TTTGACGGCGACAATGGGTG 61.511 55.000 23.74 0.00 0.00 4.61
2680 2881 1.228003 TTTGACGGCGACAATGGGT 60.228 52.632 23.74 0.00 0.00 4.51
2681 2882 1.209127 GTTTGACGGCGACAATGGG 59.791 57.895 23.74 0.00 0.00 4.00
2682 2883 0.165944 GAGTTTGACGGCGACAATGG 59.834 55.000 23.74 0.00 0.00 3.16
2683 2884 0.165944 GGAGTTTGACGGCGACAATG 59.834 55.000 23.74 0.00 0.00 2.82
2684 2885 0.250124 TGGAGTTTGACGGCGACAAT 60.250 50.000 23.74 11.42 0.00 2.71
2696 5757 1.474330 GGCCGGAATCAATGGAGTTT 58.526 50.000 5.05 0.00 0.00 2.66
2699 5760 1.153168 ACGGCCGGAATCAATGGAG 60.153 57.895 31.76 0.00 0.00 3.86
2702 5814 1.656818 AAGCACGGCCGGAATCAATG 61.657 55.000 31.76 17.74 0.00 2.82
2729 5861 1.908066 GACGGCGACAATGGGTGAAC 61.908 60.000 16.62 0.00 0.00 3.18
2734 5866 1.209127 GTTTGACGGCGACAATGGG 59.791 57.895 23.74 0.00 0.00 4.00
2735 5867 0.165944 GAGTTTGACGGCGACAATGG 59.834 55.000 23.74 0.00 0.00 3.16
2742 5874 0.110238 CACAATGGAGTTTGACGGCG 60.110 55.000 4.80 4.80 0.00 6.46
2743 5875 0.951558 ACACAATGGAGTTTGACGGC 59.048 50.000 0.00 0.00 0.00 5.68
2753 5885 0.107703 GGCATCCTCGACACAATGGA 60.108 55.000 0.00 0.00 0.00 3.41
2760 5892 0.533531 GCATGATGGCATCCTCGACA 60.534 55.000 23.92 5.89 30.68 4.35
2810 5942 0.741927 TGATCTCGACGGCGTAGTGA 60.742 55.000 22.99 22.99 38.98 3.41
2835 5967 1.152756 AACACTTCCGCTTGCCCTT 60.153 52.632 0.00 0.00 0.00 3.95
2852 5984 5.877012 GCTCTGACATCTCTGAAAATACCAA 59.123 40.000 0.00 0.00 0.00 3.67
2854 5986 5.669477 AGCTCTGACATCTCTGAAAATACC 58.331 41.667 0.00 0.00 0.00 2.73
2856 5988 6.336566 GTGAGCTCTGACATCTCTGAAAATA 58.663 40.000 16.19 0.00 0.00 1.40
2857 5989 5.177326 GTGAGCTCTGACATCTCTGAAAAT 58.823 41.667 16.19 0.00 0.00 1.82
2858 5990 4.562347 GGTGAGCTCTGACATCTCTGAAAA 60.562 45.833 16.19 0.00 0.00 2.29
2862 5994 1.202279 CGGTGAGCTCTGACATCTCTG 60.202 57.143 16.19 0.00 0.00 3.35
2863 5995 1.102154 CGGTGAGCTCTGACATCTCT 58.898 55.000 16.19 0.00 0.00 3.10
2868 6000 3.295273 ACGCGGTGAGCTCTGACA 61.295 61.111 16.19 0.00 45.59 3.58
2869 6001 2.807045 CACGCGGTGAGCTCTGAC 60.807 66.667 16.19 5.39 45.59 3.51
2893 6025 1.410517 ACCTCCATGCTATCGTGTCAG 59.589 52.381 0.00 0.00 0.00 3.51
2950 6084 0.536233 AGTGCGTTGTACATTGGCCA 60.536 50.000 0.00 0.00 0.00 5.36
2951 6085 0.109781 CAGTGCGTTGTACATTGGCC 60.110 55.000 0.00 0.00 0.00 5.36
2964 6099 4.880537 CCTAGCCTCGGCAGTGCG 62.881 72.222 9.45 4.79 44.88 5.34
2969 6104 1.048724 AAGCATACCTAGCCTCGGCA 61.049 55.000 11.02 0.00 44.88 5.69
2987 6122 4.404394 TCGGTGAGCTTCTGGATGTATAAA 59.596 41.667 0.00 0.00 0.00 1.40
2996 6131 2.125350 GCCTCGGTGAGCTTCTGG 60.125 66.667 0.00 0.00 0.00 3.86
3040 6175 3.090037 TCCTAGTCTTTCTCGGTGAAGG 58.910 50.000 0.00 0.00 35.89 3.46
3046 6181 0.248702 GCGCTCCTAGTCTTTCTCGG 60.249 60.000 0.00 0.00 0.00 4.63
3088 6223 3.438434 GGTGATTCTTGTCTTCCTCTTGC 59.562 47.826 0.00 0.00 0.00 4.01
3113 6248 0.613260 AACCTTGGCGCTGATACTGA 59.387 50.000 7.64 0.00 0.00 3.41
3161 6296 6.784176 TGCGTTTGACGTATAGTATGTTCTA 58.216 36.000 2.27 0.00 44.73 2.10
3163 6298 5.937165 TGCGTTTGACGTATAGTATGTTC 57.063 39.130 2.27 0.00 44.73 3.18
3169 6304 3.306166 GCAGATTGCGTTTGACGTATAGT 59.694 43.478 2.27 0.00 44.73 2.12
3170 6305 3.850272 GCAGATTGCGTTTGACGTATAG 58.150 45.455 2.27 0.00 44.73 1.31
3171 6306 3.918258 GCAGATTGCGTTTGACGTATA 57.082 42.857 2.27 0.00 44.73 1.47
3172 6307 2.806288 GCAGATTGCGTTTGACGTAT 57.194 45.000 2.27 0.00 44.73 3.06
3214 6349 9.570488 GTCCATTATAAATACTAGTAGGCGAAG 57.430 37.037 8.85 0.00 0.00 3.79
3217 6352 7.755591 TCGTCCATTATAAATACTAGTAGGCG 58.244 38.462 8.85 4.88 0.00 5.52
3235 6370 4.433615 GTGTGACAGTTATCATCGTCCAT 58.566 43.478 0.00 0.00 0.00 3.41
3236 6371 3.672241 CGTGTGACAGTTATCATCGTCCA 60.672 47.826 0.00 0.00 0.00 4.02
3237 6372 2.852413 CGTGTGACAGTTATCATCGTCC 59.148 50.000 0.00 0.00 0.00 4.79
3238 6373 3.300853 CACGTGTGACAGTTATCATCGTC 59.699 47.826 7.58 0.00 38.76 4.20
3239 6374 3.242518 CACGTGTGACAGTTATCATCGT 58.757 45.455 7.58 0.00 40.19 3.73
3240 6375 3.242518 ACACGTGTGACAGTTATCATCG 58.757 45.455 22.71 0.00 36.00 3.84
3257 6392 2.342651 CAGATCTGTTAACGCTCACACG 59.657 50.000 14.95 0.00 39.50 4.49
3258 6393 2.668457 CCAGATCTGTTAACGCTCACAC 59.332 50.000 21.11 0.00 0.00 3.82
3259 6394 2.299013 ACCAGATCTGTTAACGCTCACA 59.701 45.455 21.11 0.00 0.00 3.58
3260 6395 2.924290 GACCAGATCTGTTAACGCTCAC 59.076 50.000 21.11 0.00 0.00 3.51
3261 6396 2.560981 TGACCAGATCTGTTAACGCTCA 59.439 45.455 21.11 8.83 0.00 4.26
3262 6397 2.924290 GTGACCAGATCTGTTAACGCTC 59.076 50.000 21.11 6.73 0.00 5.03
3263 6398 2.299013 TGTGACCAGATCTGTTAACGCT 59.701 45.455 21.11 0.00 0.00 5.07
3264 6399 2.683968 TGTGACCAGATCTGTTAACGC 58.316 47.619 21.11 14.62 0.00 4.84
3265 6400 4.245660 ACATGTGACCAGATCTGTTAACG 58.754 43.478 21.11 8.07 0.00 3.18
3266 6401 6.560253 AAACATGTGACCAGATCTGTTAAC 57.440 37.500 21.11 11.30 0.00 2.01
3267 6402 6.545666 ACAAAACATGTGACCAGATCTGTTAA 59.454 34.615 21.11 0.00 41.93 2.01
3268 6403 6.061441 ACAAAACATGTGACCAGATCTGTTA 58.939 36.000 21.11 4.47 41.93 2.41
3269 6404 4.889409 ACAAAACATGTGACCAGATCTGTT 59.111 37.500 21.11 7.31 41.93 3.16
3270 6405 4.464008 ACAAAACATGTGACCAGATCTGT 58.536 39.130 21.11 9.51 41.93 3.41
3282 6417 5.189928 TCTTAGACACCACACAAAACATGT 58.810 37.500 0.00 0.00 45.34 3.21
3283 6418 5.277974 CCTCTTAGACACCACACAAAACATG 60.278 44.000 0.00 0.00 0.00 3.21
3284 6419 4.821805 CCTCTTAGACACCACACAAAACAT 59.178 41.667 0.00 0.00 0.00 2.71
3285 6420 4.080807 TCCTCTTAGACACCACACAAAACA 60.081 41.667 0.00 0.00 0.00 2.83
3286 6421 4.272748 GTCCTCTTAGACACCACACAAAAC 59.727 45.833 0.00 0.00 36.73 2.43
3287 6422 4.448210 GTCCTCTTAGACACCACACAAAA 58.552 43.478 0.00 0.00 36.73 2.44
3288 6423 3.181458 GGTCCTCTTAGACACCACACAAA 60.181 47.826 1.70 0.00 38.59 2.83
3289 6424 2.367567 GGTCCTCTTAGACACCACACAA 59.632 50.000 1.70 0.00 38.59 3.33
3290 6425 1.968493 GGTCCTCTTAGACACCACACA 59.032 52.381 1.70 0.00 38.59 3.72
3291 6426 1.968493 TGGTCCTCTTAGACACCACAC 59.032 52.381 4.60 0.00 38.59 3.82
3292 6427 2.248248 CTGGTCCTCTTAGACACCACA 58.752 52.381 4.60 0.00 38.59 4.17
3293 6428 1.066787 GCTGGTCCTCTTAGACACCAC 60.067 57.143 4.60 0.59 38.59 4.16
3294 6429 1.267121 GCTGGTCCTCTTAGACACCA 58.733 55.000 7.77 7.77 38.59 4.17
3295 6430 0.537653 GGCTGGTCCTCTTAGACACC 59.462 60.000 0.00 0.00 38.59 4.16
3296 6431 0.537653 GGGCTGGTCCTCTTAGACAC 59.462 60.000 0.00 0.00 38.59 3.67
3297 6432 0.116342 TGGGCTGGTCCTCTTAGACA 59.884 55.000 0.00 0.00 38.59 3.41
3298 6433 0.537653 GTGGGCTGGTCCTCTTAGAC 59.462 60.000 0.00 0.00 35.95 2.59
3299 6434 0.116342 TGTGGGCTGGTCCTCTTAGA 59.884 55.000 0.00 0.00 34.39 2.10
3300 6435 0.250513 GTGTGGGCTGGTCCTCTTAG 59.749 60.000 0.00 0.00 34.39 2.18
3301 6436 1.541310 CGTGTGGGCTGGTCCTCTTA 61.541 60.000 0.00 0.00 34.39 2.10
3302 6437 2.883828 CGTGTGGGCTGGTCCTCTT 61.884 63.158 0.00 0.00 34.39 2.85
3303 6438 3.314331 CGTGTGGGCTGGTCCTCT 61.314 66.667 0.00 0.00 34.39 3.69
3307 6442 4.947147 TTGGCGTGTGGGCTGGTC 62.947 66.667 0.00 0.00 42.84 4.02
3320 6455 2.010582 TTTCTTGCCCACACGTTGGC 62.011 55.000 12.44 12.44 45.37 4.52
3321 6456 0.457851 TTTTCTTGCCCACACGTTGG 59.542 50.000 9.11 9.11 46.47 3.77
3322 6457 1.134175 ACTTTTCTTGCCCACACGTTG 59.866 47.619 0.00 0.00 0.00 4.10
3323 6458 1.470051 ACTTTTCTTGCCCACACGTT 58.530 45.000 0.00 0.00 0.00 3.99
3324 6459 2.335316 TACTTTTCTTGCCCACACGT 57.665 45.000 0.00 0.00 0.00 4.49
3325 6460 3.004315 ACATTACTTTTCTTGCCCACACG 59.996 43.478 0.00 0.00 0.00 4.49
3326 6461 4.584327 ACATTACTTTTCTTGCCCACAC 57.416 40.909 0.00 0.00 0.00 3.82
3327 6462 4.646945 TGAACATTACTTTTCTTGCCCACA 59.353 37.500 0.00 0.00 0.00 4.17
3328 6463 4.982295 GTGAACATTACTTTTCTTGCCCAC 59.018 41.667 0.00 0.00 0.00 4.61
3329 6464 4.646945 TGTGAACATTACTTTTCTTGCCCA 59.353 37.500 0.00 0.00 0.00 5.36
3330 6465 4.982295 GTGTGAACATTACTTTTCTTGCCC 59.018 41.667 0.00 0.00 0.00 5.36
3331 6466 4.675114 CGTGTGAACATTACTTTTCTTGCC 59.325 41.667 0.00 0.00 0.00 4.52
3332 6467 4.146443 GCGTGTGAACATTACTTTTCTTGC 59.854 41.667 0.00 0.00 0.00 4.01
3333 6468 4.675114 GGCGTGTGAACATTACTTTTCTTG 59.325 41.667 0.00 0.00 0.00 3.02
3334 6469 4.578928 AGGCGTGTGAACATTACTTTTCTT 59.421 37.500 0.00 0.00 0.00 2.52
3335 6470 4.134563 AGGCGTGTGAACATTACTTTTCT 58.865 39.130 0.00 0.00 0.00 2.52
3336 6471 4.483476 AGGCGTGTGAACATTACTTTTC 57.517 40.909 0.00 0.00 0.00 2.29
3337 6472 4.911514 AAGGCGTGTGAACATTACTTTT 57.088 36.364 0.00 0.00 0.00 2.27
3338 6473 4.911514 AAAGGCGTGTGAACATTACTTT 57.088 36.364 0.00 0.00 0.00 2.66
3339 6474 4.911514 AAAAGGCGTGTGAACATTACTT 57.088 36.364 0.00 0.00 0.00 2.24
3340 6475 4.911514 AAAAAGGCGTGTGAACATTACT 57.088 36.364 0.00 0.00 0.00 2.24
3366 6501 3.062466 TGTGAGAGGGACCGCGAG 61.062 66.667 8.23 0.00 0.00 5.03
3367 6502 3.371063 GTGTGAGAGGGACCGCGA 61.371 66.667 8.23 0.00 0.00 5.87
3368 6503 4.778415 CGTGTGAGAGGGACCGCG 62.778 72.222 0.00 0.00 0.00 6.46
3370 6505 4.436998 GGCGTGTGAGAGGGACCG 62.437 72.222 0.00 0.00 0.00 4.79
3371 6506 1.681327 TAGGCGTGTGAGAGGGACC 60.681 63.158 0.00 0.00 0.00 4.46
3372 6507 1.511768 GTAGGCGTGTGAGAGGGAC 59.488 63.158 0.00 0.00 0.00 4.46
3373 6508 2.044555 CGTAGGCGTGTGAGAGGGA 61.045 63.158 0.00 0.00 0.00 4.20
3374 6509 2.490217 CGTAGGCGTGTGAGAGGG 59.510 66.667 0.00 0.00 0.00 4.30
3386 6521 2.980568 TCTATTTTGCCCACACGTAGG 58.019 47.619 0.00 0.00 0.00 3.18
3387 6522 5.583061 TGTTATCTATTTTGCCCACACGTAG 59.417 40.000 0.00 0.00 0.00 3.51
3388 6523 5.352016 GTGTTATCTATTTTGCCCACACGTA 59.648 40.000 0.00 0.00 0.00 3.57
3389 6524 4.155280 GTGTTATCTATTTTGCCCACACGT 59.845 41.667 0.00 0.00 0.00 4.49
3390 6525 4.394920 AGTGTTATCTATTTTGCCCACACG 59.605 41.667 0.00 0.00 38.63 4.49
3391 6526 5.414454 TGAGTGTTATCTATTTTGCCCACAC 59.586 40.000 0.00 0.00 34.71 3.82
3392 6527 5.414454 GTGAGTGTTATCTATTTTGCCCACA 59.586 40.000 0.00 0.00 0.00 4.17
3393 6528 5.414454 TGTGAGTGTTATCTATTTTGCCCAC 59.586 40.000 0.00 0.00 0.00 4.61
3394 6529 5.414454 GTGTGAGTGTTATCTATTTTGCCCA 59.586 40.000 0.00 0.00 0.00 5.36
3395 6530 5.447279 CGTGTGAGTGTTATCTATTTTGCCC 60.447 44.000 0.00 0.00 0.00 5.36
3396 6531 5.350365 TCGTGTGAGTGTTATCTATTTTGCC 59.650 40.000 0.00 0.00 0.00 4.52
3397 6532 6.241385 GTCGTGTGAGTGTTATCTATTTTGC 58.759 40.000 0.00 0.00 0.00 3.68
3398 6533 6.590292 AGGTCGTGTGAGTGTTATCTATTTTG 59.410 38.462 0.00 0.00 0.00 2.44
3399 6534 6.698380 AGGTCGTGTGAGTGTTATCTATTTT 58.302 36.000 0.00 0.00 0.00 1.82
3400 6535 6.153000 AGAGGTCGTGTGAGTGTTATCTATTT 59.847 38.462 0.00 0.00 0.00 1.40
3401 6536 5.652891 AGAGGTCGTGTGAGTGTTATCTATT 59.347 40.000 0.00 0.00 0.00 1.73
3402 6537 5.194432 AGAGGTCGTGTGAGTGTTATCTAT 58.806 41.667 0.00 0.00 0.00 1.98
3403 6538 4.586884 AGAGGTCGTGTGAGTGTTATCTA 58.413 43.478 0.00 0.00 0.00 1.98
3404 6539 3.422796 AGAGGTCGTGTGAGTGTTATCT 58.577 45.455 0.00 0.00 0.00 1.98
3405 6540 3.440872 AGAGAGGTCGTGTGAGTGTTATC 59.559 47.826 0.00 0.00 0.00 1.75
3406 6541 3.422796 AGAGAGGTCGTGTGAGTGTTAT 58.577 45.455 0.00 0.00 0.00 1.89
3407 6542 2.812591 GAGAGAGGTCGTGTGAGTGTTA 59.187 50.000 0.00 0.00 0.00 2.41
3408 6543 1.609555 GAGAGAGGTCGTGTGAGTGTT 59.390 52.381 0.00 0.00 0.00 3.32
3409 6544 1.240256 GAGAGAGGTCGTGTGAGTGT 58.760 55.000 0.00 0.00 0.00 3.55
3410 6545 1.198867 CTGAGAGAGGTCGTGTGAGTG 59.801 57.143 0.00 0.00 0.00 3.51
3411 6546 1.529226 CTGAGAGAGGTCGTGTGAGT 58.471 55.000 0.00 0.00 0.00 3.41
3412 6547 0.170116 GCTGAGAGAGGTCGTGTGAG 59.830 60.000 0.00 0.00 0.00 3.51
3413 6548 1.244697 GGCTGAGAGAGGTCGTGTGA 61.245 60.000 0.00 0.00 0.00 3.58
3414 6549 1.214062 GGCTGAGAGAGGTCGTGTG 59.786 63.158 0.00 0.00 0.00 3.82
3415 6550 1.228583 TGGCTGAGAGAGGTCGTGT 60.229 57.895 0.00 0.00 0.00 4.49
3416 6551 1.214062 GTGGCTGAGAGAGGTCGTG 59.786 63.158 0.00 0.00 0.00 4.35
3417 6552 1.979693 GGTGGCTGAGAGAGGTCGT 60.980 63.158 0.00 0.00 0.00 4.34
3418 6553 0.394488 TAGGTGGCTGAGAGAGGTCG 60.394 60.000 0.00 0.00 0.00 4.79
3419 6554 1.107945 GTAGGTGGCTGAGAGAGGTC 58.892 60.000 0.00 0.00 0.00 3.85
3420 6555 0.324830 GGTAGGTGGCTGAGAGAGGT 60.325 60.000 0.00 0.00 0.00 3.85
3421 6556 0.032615 AGGTAGGTGGCTGAGAGAGG 60.033 60.000 0.00 0.00 0.00 3.69
3422 6557 1.341482 TGAGGTAGGTGGCTGAGAGAG 60.341 57.143 0.00 0.00 0.00 3.20
3423 6558 0.704664 TGAGGTAGGTGGCTGAGAGA 59.295 55.000 0.00 0.00 0.00 3.10
3424 6559 0.820871 GTGAGGTAGGTGGCTGAGAG 59.179 60.000 0.00 0.00 0.00 3.20
3425 6560 0.965866 CGTGAGGTAGGTGGCTGAGA 60.966 60.000 0.00 0.00 0.00 3.27
3426 6561 1.513158 CGTGAGGTAGGTGGCTGAG 59.487 63.158 0.00 0.00 0.00 3.35
3427 6562 3.694746 CGTGAGGTAGGTGGCTGA 58.305 61.111 0.00 0.00 0.00 4.26
3452 6587 4.760047 GACTGTCATGCGGGGCGT 62.760 66.667 2.24 0.00 0.00 5.68
3453 6588 4.758251 TGACTGTCATGCGGGGCG 62.758 66.667 6.36 0.00 0.00 6.13
3454 6589 3.127533 GTGACTGTCATGCGGGGC 61.128 66.667 14.37 0.00 0.00 5.80
3455 6590 2.436646 GGTGACTGTCATGCGGGG 60.437 66.667 14.37 0.00 0.00 5.73
3456 6591 2.034879 GTGGTGACTGTCATGCGGG 61.035 63.158 14.37 0.00 0.00 6.13
3457 6592 2.382746 CGTGGTGACTGTCATGCGG 61.383 63.158 14.37 0.97 0.00 5.69
3458 6593 3.015293 GCGTGGTGACTGTCATGCG 62.015 63.158 14.37 17.65 36.39 4.73
3459 6594 2.863153 GCGTGGTGACTGTCATGC 59.137 61.111 14.37 11.79 38.49 4.06
3460 6595 1.617755 GACGCGTGGTGACTGTCATG 61.618 60.000 20.70 5.93 0.00 3.07
3461 6596 1.372997 GACGCGTGGTGACTGTCAT 60.373 57.895 20.70 0.00 0.00 3.06
3462 6597 2.027024 GACGCGTGGTGACTGTCA 59.973 61.111 20.70 6.36 0.00 3.58
3463 6598 2.733593 GGACGCGTGGTGACTGTC 60.734 66.667 20.70 0.00 0.00 3.51
3464 6599 4.295119 GGGACGCGTGGTGACTGT 62.295 66.667 20.70 0.00 0.00 3.55
3477 6612 3.443045 CATGGCAACTGCGGGGAC 61.443 66.667 0.00 0.00 43.26 4.46
3478 6613 2.891941 GATCATGGCAACTGCGGGGA 62.892 60.000 0.00 0.00 43.26 4.81
3479 6614 2.440796 ATCATGGCAACTGCGGGG 60.441 61.111 0.00 0.00 43.26 5.73
3480 6615 2.484062 GGATCATGGCAACTGCGGG 61.484 63.158 0.00 0.00 43.26 6.13
3481 6616 2.827051 CGGATCATGGCAACTGCGG 61.827 63.158 0.00 0.00 43.26 5.69
3482 6617 1.368345 TTCGGATCATGGCAACTGCG 61.368 55.000 0.00 0.00 43.26 5.18
3483 6618 0.099436 GTTCGGATCATGGCAACTGC 59.901 55.000 0.00 0.00 41.14 4.40
3484 6619 0.734889 GGTTCGGATCATGGCAACTG 59.265 55.000 0.00 0.00 37.61 3.16
3485 6620 0.394352 GGGTTCGGATCATGGCAACT 60.394 55.000 0.00 0.00 37.61 3.16
3486 6621 0.394352 AGGGTTCGGATCATGGCAAC 60.394 55.000 0.00 0.00 0.00 4.17
3487 6622 0.107214 GAGGGTTCGGATCATGGCAA 60.107 55.000 0.00 0.00 0.00 4.52
3488 6623 0.982852 AGAGGGTTCGGATCATGGCA 60.983 55.000 0.00 0.00 0.00 4.92
3489 6624 0.181350 AAGAGGGTTCGGATCATGGC 59.819 55.000 0.00 0.00 0.00 4.40
3490 6625 2.717639 AAAGAGGGTTCGGATCATGG 57.282 50.000 0.00 0.00 0.00 3.66
3491 6626 5.126067 ACATTAAAGAGGGTTCGGATCATG 58.874 41.667 0.00 0.00 0.00 3.07
3492 6627 5.368989 GACATTAAAGAGGGTTCGGATCAT 58.631 41.667 0.00 0.00 0.00 2.45
3493 6628 4.383770 GGACATTAAAGAGGGTTCGGATCA 60.384 45.833 0.00 0.00 0.00 2.92
3494 6629 4.127907 GGACATTAAAGAGGGTTCGGATC 58.872 47.826 0.00 0.00 0.00 3.36
3495 6630 3.431766 CGGACATTAAAGAGGGTTCGGAT 60.432 47.826 0.00 0.00 0.00 4.18
3496 6631 2.093869 CGGACATTAAAGAGGGTTCGGA 60.094 50.000 0.00 0.00 0.00 4.55
3497 6632 2.277084 CGGACATTAAAGAGGGTTCGG 58.723 52.381 0.00 0.00 0.00 4.30
3498 6633 2.968675 ACGGACATTAAAGAGGGTTCG 58.031 47.619 0.00 0.00 38.20 3.95
3499 6634 6.806388 TTAAACGGACATTAAAGAGGGTTC 57.194 37.500 0.00 0.00 0.00 3.62
3500 6635 7.599171 CAATTAAACGGACATTAAAGAGGGTT 58.401 34.615 0.00 0.00 0.00 4.11
3501 6636 6.349860 GCAATTAAACGGACATTAAAGAGGGT 60.350 38.462 0.00 0.00 0.00 4.34
3502 6637 6.033966 GCAATTAAACGGACATTAAAGAGGG 58.966 40.000 0.00 0.00 0.00 4.30
3503 6638 6.616947 TGCAATTAAACGGACATTAAAGAGG 58.383 36.000 0.00 0.00 0.00 3.69
3504 6639 7.305474 ACTGCAATTAAACGGACATTAAAGAG 58.695 34.615 0.00 0.00 0.00 2.85
3505 6640 7.209471 ACTGCAATTAAACGGACATTAAAGA 57.791 32.000 0.00 0.00 0.00 2.52
3506 6641 7.619161 GCAACTGCAATTAAACGGACATTAAAG 60.619 37.037 0.00 0.00 41.59 1.85
3507 6642 6.144724 GCAACTGCAATTAAACGGACATTAAA 59.855 34.615 0.00 0.00 41.59 1.52
3508 6643 5.631512 GCAACTGCAATTAAACGGACATTAA 59.368 36.000 0.00 0.00 41.59 1.40
3509 6644 5.157781 GCAACTGCAATTAAACGGACATTA 58.842 37.500 0.00 0.00 41.59 1.90
3510 6645 3.987220 GCAACTGCAATTAAACGGACATT 59.013 39.130 0.00 0.00 41.59 2.71
3511 6646 3.574614 GCAACTGCAATTAAACGGACAT 58.425 40.909 0.00 0.00 41.59 3.06
3512 6647 2.287909 GGCAACTGCAATTAAACGGACA 60.288 45.455 3.76 0.00 44.36 4.02
3513 6648 2.287909 TGGCAACTGCAATTAAACGGAC 60.288 45.455 3.76 0.00 44.36 4.79
3514 6649 1.957177 TGGCAACTGCAATTAAACGGA 59.043 42.857 3.76 0.00 44.36 4.69
3515 6650 2.430546 TGGCAACTGCAATTAAACGG 57.569 45.000 3.76 0.00 44.36 4.44
3516 6651 3.316283 ACATGGCAACTGCAATTAAACG 58.684 40.909 3.76 0.00 44.36 3.60
3517 6652 4.611130 GCAACATGGCAACTGCAATTAAAC 60.611 41.667 12.31 0.00 44.36 2.01
3518 6653 3.497640 GCAACATGGCAACTGCAATTAAA 59.502 39.130 12.31 0.00 44.36 1.52
3519 6654 3.065655 GCAACATGGCAACTGCAATTAA 58.934 40.909 12.31 0.00 44.36 1.40
3520 6655 2.299582 AGCAACATGGCAACTGCAATTA 59.700 40.909 17.54 0.00 44.36 1.40
3521 6656 1.071071 AGCAACATGGCAACTGCAATT 59.929 42.857 17.54 0.00 44.36 2.32
3522 6657 0.682852 AGCAACATGGCAACTGCAAT 59.317 45.000 17.54 0.00 44.36 3.56
3523 6658 0.249531 CAGCAACATGGCAACTGCAA 60.250 50.000 17.54 0.00 44.36 4.08
3524 6659 1.364536 CAGCAACATGGCAACTGCA 59.635 52.632 17.54 0.00 44.36 4.41
3525 6660 0.597568 TACAGCAACATGGCAACTGC 59.402 50.000 9.94 9.94 41.14 4.40
3526 6661 1.881973 AGTACAGCAACATGGCAACTG 59.118 47.619 0.00 1.68 35.83 3.16
3527 6662 2.276732 AGTACAGCAACATGGCAACT 57.723 45.000 0.00 0.00 35.83 3.16
3528 6663 2.811431 TGTAGTACAGCAACATGGCAAC 59.189 45.455 0.00 0.00 35.83 4.17
3529 6664 3.073678 CTGTAGTACAGCAACATGGCAA 58.926 45.455 17.11 0.00 39.62 4.52
3530 6665 2.698803 CTGTAGTACAGCAACATGGCA 58.301 47.619 17.11 0.00 39.62 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.