Multiple sequence alignment - TraesCS5A01G334000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G334000 chr5A 100.000 2569 0 0 1 2569 543713240 543715808 0.000000e+00 4745.0
1 TraesCS5A01G334000 chr5A 81.579 342 43 11 846 1179 543916351 543916680 5.450000e-67 265.0
2 TraesCS5A01G334000 chr5A 79.330 179 23 11 2095 2266 541941107 541941278 2.090000e-21 113.0
3 TraesCS5A01G334000 chr5D 92.736 2602 129 24 1 2566 428306260 428308837 0.000000e+00 3703.0
4 TraesCS5A01G334000 chr5D 82.913 357 45 11 827 1179 428374801 428375145 8.930000e-80 307.0
5 TraesCS5A01G334000 chr5D 84.444 135 13 7 2091 2222 428376061 428376190 2.680000e-25 126.0
6 TraesCS5A01G334000 chr5B 91.051 1475 104 11 1 1458 517502645 517504108 0.000000e+00 1967.0
7 TraesCS5A01G334000 chr5B 87.110 993 94 17 1521 2493 517504432 517505410 0.000000e+00 1094.0
8 TraesCS5A01G334000 chr5B 82.609 253 32 7 928 1180 517557148 517557388 2.000000e-51 213.0
9 TraesCS5A01G334000 chr7A 83.333 114 11 6 66 176 520513661 520513769 5.850000e-17 99.0
10 TraesCS5A01G334000 chr7D 82.243 107 13 3 71 176 475452382 475452281 1.270000e-13 87.9
11 TraesCS5A01G334000 chr7B 82.955 88 10 3 83 169 499606961 499606878 9.860000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G334000 chr5A 543713240 543715808 2568 False 4745.0 4745 100.0000 1 2569 1 chr5A.!!$F2 2568
1 TraesCS5A01G334000 chr5D 428306260 428308837 2577 False 3703.0 3703 92.7360 1 2566 1 chr5D.!!$F1 2565
2 TraesCS5A01G334000 chr5D 428374801 428376190 1389 False 216.5 307 83.6785 827 2222 2 chr5D.!!$F2 1395
3 TraesCS5A01G334000 chr5B 517502645 517505410 2765 False 1530.5 1967 89.0805 1 2493 2 chr5B.!!$F2 2492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 673 0.240145 TAGATAGCCGATTGGACGCG 59.76 55.0 3.53 3.53 37.49 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 2060 0.249238 CGAAGGAGGAAGCCTGATCG 60.249 60.0 0.0 0.0 38.58 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.767673 GGGATATTCCATGATTGCAGCAT 59.232 43.478 0.00 0.00 38.64 3.79
41 42 1.552578 TGCAGCATGAAGAATTGCCT 58.447 45.000 0.00 0.00 39.69 4.75
46 47 3.066342 CAGCATGAAGAATTGCCTACCTG 59.934 47.826 0.00 0.00 39.69 4.00
58 59 5.467035 TTGCCTACCTGGAAAAGAAAATG 57.533 39.130 0.00 0.00 38.35 2.32
113 114 5.356751 TGCCATGCTATATCAACGAAAAACT 59.643 36.000 0.00 0.00 0.00 2.66
126 127 4.920376 ACGAAAAACTGGTGAGAATTGTG 58.080 39.130 0.00 0.00 0.00 3.33
127 128 3.730715 CGAAAAACTGGTGAGAATTGTGC 59.269 43.478 0.00 0.00 0.00 4.57
155 157 3.701205 AAAACAGAAATTGCCATCCCC 57.299 42.857 0.00 0.00 0.00 4.81
156 158 2.323999 AACAGAAATTGCCATCCCCA 57.676 45.000 0.00 0.00 0.00 4.96
207 210 8.450964 AGTTAACCAATTATTGTTGTCATCTCG 58.549 33.333 0.88 0.00 0.00 4.04
208 211 5.235305 ACCAATTATTGTTGTCATCTCGC 57.765 39.130 4.15 0.00 0.00 5.03
227 230 0.662619 CAGTTCGCTCAAAGGTTGCA 59.337 50.000 0.00 0.00 0.00 4.08
229 232 1.267806 AGTTCGCTCAAAGGTTGCATG 59.732 47.619 0.00 0.00 0.00 4.06
236 239 0.794229 CAAAGGTTGCATGCGCTACG 60.794 55.000 14.09 0.00 43.74 3.51
237 240 0.953471 AAAGGTTGCATGCGCTACGA 60.953 50.000 14.09 0.00 43.74 3.43
239 242 1.060937 GGTTGCATGCGCTACGAAG 59.939 57.895 14.09 0.00 43.74 3.79
242 245 0.669012 TTGCATGCGCTACGAAGACA 60.669 50.000 14.09 0.00 39.64 3.41
258 261 4.546456 CGAAGACATTAGAATTCGTGCGTC 60.546 45.833 0.00 6.43 39.62 5.19
259 262 3.845178 AGACATTAGAATTCGTGCGTCA 58.155 40.909 17.51 0.00 0.00 4.35
263 266 5.938322 ACATTAGAATTCGTGCGTCAAATT 58.062 33.333 0.00 0.00 0.00 1.82
336 339 9.793252 CAGATTTCTAACATTTGGGTTAAGATG 57.207 33.333 0.00 0.00 33.18 2.90
355 359 6.017400 AGATGTTGCTTGGAGTATTTGTTG 57.983 37.500 0.00 0.00 0.00 3.33
378 382 9.292195 GTTGCTAAATACATATTTTAGGGGCTA 57.708 33.333 2.34 0.00 37.16 3.93
431 435 5.562890 GCAGACCAATCAGTAAAAACCTGAC 60.563 44.000 0.00 0.00 41.47 3.51
437 441 4.659111 TCAGTAAAAACCTGACTCGACA 57.341 40.909 0.00 0.00 34.12 4.35
579 583 7.302350 TGACAAAATGTACTGATAATCACGG 57.698 36.000 0.00 0.00 0.00 4.94
581 585 7.768582 TGACAAAATGTACTGATAATCACGGAT 59.231 33.333 0.00 0.00 0.00 4.18
592 596 5.758296 TGATAATCACGGATTTTGTAGAGCC 59.242 40.000 4.76 0.00 33.95 4.70
625 632 2.655364 CCGAGCGTGCCGATAGTG 60.655 66.667 4.65 0.00 0.00 2.74
636 643 1.957177 GCCGATAGTGGTCTGATCTGA 59.043 52.381 0.00 0.00 0.00 3.27
664 673 0.240145 TAGATAGCCGATTGGACGCG 59.760 55.000 3.53 3.53 37.49 6.01
687 696 2.577700 ACACGCTGTATTCACCCAAAA 58.422 42.857 0.00 0.00 0.00 2.44
695 704 3.810941 TGTATTCACCCAAAACTCACGAC 59.189 43.478 0.00 0.00 0.00 4.34
696 705 2.404923 TTCACCCAAAACTCACGACA 57.595 45.000 0.00 0.00 0.00 4.35
703 712 2.611751 CCAAAACTCACGACATGTCACA 59.388 45.455 24.93 7.36 0.00 3.58
748 757 4.503007 AGCGCACATTTACACTAGATTACG 59.497 41.667 11.47 0.00 0.00 3.18
792 801 4.219288 GGCCAAATCAATTCCAGGCTATAG 59.781 45.833 0.00 0.00 41.71 1.31
806 815 5.948162 CCAGGCTATAGGAACATTTATGCAT 59.052 40.000 3.79 3.79 0.00 3.96
807 816 7.037658 TCCAGGCTATAGGAACATTTATGCATA 60.038 37.037 1.16 1.16 0.00 3.14
808 817 7.281774 CCAGGCTATAGGAACATTTATGCATAG 59.718 40.741 6.50 0.00 0.00 2.23
809 818 6.825721 AGGCTATAGGAACATTTATGCATAGC 59.174 38.462 6.50 3.70 39.10 2.97
810 819 7.020914 GCTATAGGAACATTTATGCATAGCC 57.979 40.000 6.50 3.63 35.63 3.93
811 820 6.599244 GCTATAGGAACATTTATGCATAGCCA 59.401 38.462 6.50 0.00 35.63 4.75
812 821 7.201679 GCTATAGGAACATTTATGCATAGCCAG 60.202 40.741 6.50 1.73 35.63 4.85
813 822 4.796606 AGGAACATTTATGCATAGCCAGT 58.203 39.130 6.50 2.34 0.00 4.00
822 831 0.819666 GCATAGCCAGTTAGCCACCC 60.820 60.000 0.00 0.00 0.00 4.61
824 833 1.143684 CATAGCCAGTTAGCCACCCAT 59.856 52.381 0.00 0.00 0.00 4.00
844 854 8.625651 CACCCATGGAAATAATTAAACGTATCA 58.374 33.333 15.22 0.00 0.00 2.15
1023 1036 4.884668 TCGTCCAAGAAATTCCTACAGT 57.115 40.909 0.00 0.00 0.00 3.55
1034 1047 4.162690 CTACAGTGCGAGGCCCCC 62.163 72.222 0.00 0.00 0.00 5.40
1192 1253 2.042230 GGGCGGGTCCTTCTCCTA 60.042 66.667 0.00 0.00 34.39 2.94
1196 1257 1.393487 GCGGGTCCTTCTCCTACCTC 61.393 65.000 0.00 0.00 33.59 3.85
1215 1276 3.618750 GTTCCGTGGACACCCCGA 61.619 66.667 0.00 0.00 37.93 5.14
1404 1474 4.585162 GGACGAAGGAATAGATGAGGAGAA 59.415 45.833 0.00 0.00 0.00 2.87
1421 1491 1.653918 AGAAATGAGAGGGGAGAGGGA 59.346 52.381 0.00 0.00 0.00 4.20
1473 1543 0.102663 GGGTAGCCTGTAGTTCGAGC 59.897 60.000 2.95 0.00 0.00 5.03
1474 1544 1.104630 GGTAGCCTGTAGTTCGAGCT 58.895 55.000 7.07 7.07 37.58 4.09
1537 1868 6.631016 TCACTATCGATCTTGCTGTAAAAGT 58.369 36.000 0.00 0.00 0.00 2.66
1556 1887 9.860898 GTAAAAGTTTCATCCTTGCAATAAGAT 57.139 29.630 0.00 0.00 0.00 2.40
1585 1924 0.179000 GGAGCTGAATCCATCCACGT 59.821 55.000 0.00 0.00 39.34 4.49
1688 2039 0.749091 CGGCCTTTGCAGATGGATGA 60.749 55.000 0.00 0.00 40.13 2.92
1743 2095 2.232941 TCCTTCGATTTCGTGGTAGCTT 59.767 45.455 0.00 0.00 40.80 3.74
1818 2176 8.525290 AAATTAACTATTCCTTGTCCCATGAG 57.475 34.615 0.00 0.00 0.00 2.90
1827 2185 3.473647 TCCCATGAGGAGCTGCGG 61.474 66.667 0.00 0.00 40.93 5.69
2047 2414 2.027625 CTTGTTCTCCGGTGGTCGC 61.028 63.158 0.00 0.00 37.59 5.19
2137 2504 1.821216 GAGTCCAATTTCCTTCCGCA 58.179 50.000 0.00 0.00 0.00 5.69
2153 2526 0.463295 CGCAGCATTGGAGTGAGGAT 60.463 55.000 0.00 0.00 0.00 3.24
2157 2530 2.681848 CAGCATTGGAGTGAGGATTGAC 59.318 50.000 0.00 0.00 0.00 3.18
2231 2607 1.301623 CTTCCATGCCACCCGGTAA 59.698 57.895 0.00 0.00 33.28 2.85
2305 2685 9.812347 TCTACGTGGTTTCCTTCCTATATTATA 57.188 33.333 0.00 0.00 0.00 0.98
2306 2686 9.852091 CTACGTGGTTTCCTTCCTATATTATAC 57.148 37.037 0.00 0.00 0.00 1.47
2377 2765 9.950496 AGATAAATTTACTCTGAGCTTTCTGAA 57.050 29.630 4.19 0.00 0.00 3.02
2381 2769 8.860780 AATTTACTCTGAGCTTTCTGAATTCT 57.139 30.769 7.05 0.00 0.00 2.40
2382 2770 7.664082 TTTACTCTGAGCTTTCTGAATTCTG 57.336 36.000 7.05 6.50 0.00 3.02
2383 2771 5.480642 ACTCTGAGCTTTCTGAATTCTGA 57.519 39.130 10.68 10.68 0.00 3.27
2393 2781 3.349927 TCTGAATTCTGATGCAGGTTGG 58.650 45.455 10.68 0.00 39.15 3.77
2448 2836 7.936847 TCCTCTTTTTAGCAGTGTCTATTTTCA 59.063 33.333 0.00 0.00 0.00 2.69
2511 2900 3.715495 ACTGCAAGATTCATCGAGCTAG 58.285 45.455 0.00 0.00 37.43 3.42
2528 2917 0.179051 TAGCACCGATGATGCATGCA 60.179 50.000 25.04 25.04 45.92 3.96
2529 2918 0.822121 AGCACCGATGATGCATGCAT 60.822 50.000 32.66 32.66 45.92 3.96
2530 2919 0.663269 GCACCGATGATGCATGCATG 60.663 55.000 36.73 23.36 42.88 4.06
2531 2920 0.666374 CACCGATGATGCATGCATGT 59.334 50.000 36.73 24.02 36.70 3.21
2532 2921 1.066454 CACCGATGATGCATGCATGTT 59.934 47.619 36.73 22.91 36.70 2.71
2533 2922 1.752498 ACCGATGATGCATGCATGTTT 59.248 42.857 36.73 20.40 36.70 2.83
2534 2923 2.124122 CCGATGATGCATGCATGTTTG 58.876 47.619 36.73 24.15 36.70 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.380843 TTTCCAGGTAGGCAATTCTTCA 57.619 40.909 0.00 0.00 37.29 3.02
46 47 7.873910 TGGCAATTTTCATCATTTTCTTTTCC 58.126 30.769 0.00 0.00 0.00 3.13
113 114 0.895100 GGGCAGCACAATTCTCACCA 60.895 55.000 0.00 0.00 0.00 4.17
126 127 3.433274 GCAATTTCTGTTTTTAGGGCAGC 59.567 43.478 0.00 0.00 0.00 5.25
127 128 3.996363 GGCAATTTCTGTTTTTAGGGCAG 59.004 43.478 0.00 0.00 0.00 4.85
155 157 5.688823 TCACAATCTAAGCGAACACATTTG 58.311 37.500 0.00 0.00 0.00 2.32
156 158 5.940192 TCACAATCTAAGCGAACACATTT 57.060 34.783 0.00 0.00 0.00 2.32
194 197 1.792367 CGAACTGCGAGATGACAACAA 59.208 47.619 0.00 0.00 44.57 2.83
207 210 0.661483 GCAACCTTTGAGCGAACTGC 60.661 55.000 0.00 0.00 46.98 4.40
208 211 0.662619 TGCAACCTTTGAGCGAACTG 59.337 50.000 0.00 0.00 0.00 3.16
227 230 3.710326 TCTAATGTCTTCGTAGCGCAT 57.290 42.857 11.47 0.00 0.00 4.73
229 232 4.374112 CGAATTCTAATGTCTTCGTAGCGC 60.374 45.833 0.00 0.00 36.61 5.92
236 239 4.326278 TGACGCACGAATTCTAATGTCTTC 59.674 41.667 3.52 1.30 0.00 2.87
237 240 4.242475 TGACGCACGAATTCTAATGTCTT 58.758 39.130 3.52 0.00 0.00 3.01
239 242 4.577687 TTGACGCACGAATTCTAATGTC 57.422 40.909 3.52 7.24 0.00 3.06
258 261 1.202065 CCCTCATGCACGTCGAATTTG 60.202 52.381 0.00 0.00 0.00 2.32
259 262 1.086696 CCCTCATGCACGTCGAATTT 58.913 50.000 0.00 0.00 0.00 1.82
263 266 4.794439 CGCCCTCATGCACGTCGA 62.794 66.667 0.00 0.00 0.00 4.20
336 339 4.243007 AGCAACAAATACTCCAAGCAAC 57.757 40.909 0.00 0.00 0.00 4.17
397 401 2.107378 TGATTGGTCTGCTGGTTTACCA 59.893 45.455 1.01 1.01 45.30 3.25
458 462 8.568676 TGACATGGATTTAAAAATTCGGACTA 57.431 30.769 0.00 0.00 0.00 2.59
459 463 7.461182 TGACATGGATTTAAAAATTCGGACT 57.539 32.000 0.00 0.00 0.00 3.85
553 557 9.040939 CCGTGATTATCAGTACATTTTGTCATA 57.959 33.333 0.00 0.00 0.00 2.15
567 571 6.073548 GGCTCTACAAAATCCGTGATTATCAG 60.074 42.308 0.00 0.00 31.46 2.90
579 583 1.737793 CCCACACGGCTCTACAAAATC 59.262 52.381 0.00 0.00 0.00 2.17
581 585 0.759959 TCCCACACGGCTCTACAAAA 59.240 50.000 0.00 0.00 0.00 2.44
592 596 4.394712 GGCTGGAGGTCCCACACG 62.395 72.222 0.00 0.00 40.82 4.49
594 598 4.631740 TCGGCTGGAGGTCCCACA 62.632 66.667 0.00 0.00 40.82 4.17
625 632 0.798771 GCACGTCGTCAGATCAGACC 60.799 60.000 12.17 0.00 35.07 3.85
653 662 2.845739 CGTGTAGCGCGTCCAATCG 61.846 63.158 8.43 2.60 32.40 3.34
672 681 4.062293 TCGTGAGTTTTGGGTGAATACAG 58.938 43.478 0.00 0.00 0.00 2.74
678 687 2.217750 CATGTCGTGAGTTTTGGGTGA 58.782 47.619 0.00 0.00 0.00 4.02
687 696 0.384309 ACGTGTGACATGTCGTGAGT 59.616 50.000 20.54 14.61 35.24 3.41
722 731 5.880054 ATCTAGTGTAAATGTGCGCTTTT 57.120 34.783 9.73 14.59 32.05 2.27
723 732 5.880054 AATCTAGTGTAAATGTGCGCTTT 57.120 34.783 9.73 3.30 32.05 3.51
725 734 4.503007 CGTAATCTAGTGTAAATGTGCGCT 59.497 41.667 9.73 0.00 34.33 5.92
748 757 3.128242 CCTGACCAAGATTTGACATCTGC 59.872 47.826 0.00 0.00 0.00 4.26
792 801 5.520376 AACTGGCTATGCATAAATGTTCC 57.480 39.130 8.00 3.43 0.00 3.62
806 815 0.546122 CATGGGTGGCTAACTGGCTA 59.454 55.000 0.00 0.00 42.34 3.93
807 816 1.304282 CATGGGTGGCTAACTGGCT 59.696 57.895 0.00 0.00 42.34 4.75
808 817 1.754234 CCATGGGTGGCTAACTGGC 60.754 63.158 2.85 0.00 39.01 4.85
809 818 0.331278 TTCCATGGGTGGCTAACTGG 59.669 55.000 13.02 0.00 45.63 4.00
810 819 2.214376 TTTCCATGGGTGGCTAACTG 57.786 50.000 13.02 0.00 45.63 3.16
811 820 4.601406 TTATTTCCATGGGTGGCTAACT 57.399 40.909 13.02 0.00 45.63 2.24
812 821 5.869649 AATTATTTCCATGGGTGGCTAAC 57.130 39.130 13.02 0.00 45.63 2.34
813 822 7.416890 CGTTTAATTATTTCCATGGGTGGCTAA 60.417 37.037 13.02 4.01 45.63 3.09
854 864 7.347252 ACTTGGGTTTTATTCTCTATTCTCCC 58.653 38.462 0.00 0.00 0.00 4.30
858 868 8.894731 GGAAGACTTGGGTTTTATTCTCTATTC 58.105 37.037 0.00 0.00 0.00 1.75
1101 1114 2.358737 CGCCGTGAAAGCCTCCTT 60.359 61.111 0.00 0.00 0.00 3.36
1301 1362 2.678934 TAGCGCTTCACCCTCCGT 60.679 61.111 18.68 0.00 0.00 4.69
1384 1445 6.753180 TCATTTCTCCTCATCTATTCCTTCG 58.247 40.000 0.00 0.00 0.00 3.79
1404 1474 0.030603 GGTCCCTCTCCCCTCTCATT 60.031 60.000 0.00 0.00 0.00 2.57
1473 1543 2.091885 AGAGGAAGGAGAGGACTGCTAG 60.092 54.545 0.00 0.00 43.77 3.42
1474 1544 1.926665 AGAGGAAGGAGAGGACTGCTA 59.073 52.381 0.00 0.00 43.77 3.49
1537 1868 7.603404 CCAACAAATCTTATTGCAAGGATGAAA 59.397 33.333 4.94 0.00 33.52 2.69
1556 1887 1.888512 GATTCAGCTCCAGCCAACAAA 59.111 47.619 0.00 0.00 43.38 2.83
1709 2060 0.249238 CGAAGGAGGAAGCCTGATCG 60.249 60.000 0.00 0.00 38.58 3.69
1812 2170 1.817099 GAACCGCAGCTCCTCATGG 60.817 63.158 0.00 0.00 0.00 3.66
1818 2176 0.884704 TTTCAGTGAACCGCAGCTCC 60.885 55.000 4.68 0.00 0.00 4.70
1827 2185 5.516696 TCAATCGATCGATCTTTCAGTGAAC 59.483 40.000 29.48 0.00 33.08 3.18
2047 2414 2.596452 ACAGTCGAACTATGAGTTGCG 58.404 47.619 0.00 1.54 38.80 4.85
2137 2504 2.679059 CGTCAATCCTCACTCCAATGCT 60.679 50.000 0.00 0.00 0.00 3.79
2153 2526 1.153765 CCAGCAGCTCGATCGTCAA 60.154 57.895 15.94 0.00 0.00 3.18
2157 2530 0.663867 CTGATCCAGCAGCTCGATCG 60.664 60.000 21.05 9.36 36.08 3.69
2305 2685 3.497262 TGATAAGCTCGATCGTCGTATGT 59.503 43.478 15.94 0.00 41.35 2.29
2306 2686 4.066710 TGATAAGCTCGATCGTCGTATG 57.933 45.455 15.94 1.37 41.35 2.39
2311 2692 4.153296 TCTCAGATGATAAGCTCGATCGTC 59.847 45.833 15.94 17.37 38.92 4.20
2377 2765 2.592102 ACACCAACCTGCATCAGAAT 57.408 45.000 0.00 0.00 32.44 2.40
2378 2766 2.371841 AGTACACCAACCTGCATCAGAA 59.628 45.455 0.00 0.00 32.44 3.02
2379 2767 1.977854 AGTACACCAACCTGCATCAGA 59.022 47.619 0.00 0.00 32.44 3.27
2380 2768 2.479566 AGTACACCAACCTGCATCAG 57.520 50.000 0.00 0.00 0.00 2.90
2381 2769 2.949177 AAGTACACCAACCTGCATCA 57.051 45.000 0.00 0.00 0.00 3.07
2382 2770 4.513442 TGATAAGTACACCAACCTGCATC 58.487 43.478 0.00 0.00 0.00 3.91
2383 2771 4.225042 TCTGATAAGTACACCAACCTGCAT 59.775 41.667 0.00 0.00 0.00 3.96
2393 2781 9.988815 ACATTTCCATAGATCTGATAAGTACAC 57.011 33.333 5.18 0.00 0.00 2.90
2448 2836 5.934625 GGTCATGTCTCACAGTATCAAAAGT 59.065 40.000 0.00 0.00 0.00 2.66
2511 2900 0.663269 CATGCATGCATCATCGGTGC 60.663 55.000 30.07 0.00 42.81 5.01
2533 2922 6.370433 TCTTTATTACAATATTGCGCTGCA 57.630 33.333 15.48 0.00 36.47 4.41
2534 2923 8.015087 TGTATCTTTATTACAATATTGCGCTGC 58.985 33.333 15.48 0.00 0.00 5.25
2535 2924 9.318041 GTGTATCTTTATTACAATATTGCGCTG 57.682 33.333 15.48 0.00 0.00 5.18
2537 2926 9.318041 CTGTGTATCTTTATTACAATATTGCGC 57.682 33.333 15.48 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.