Multiple sequence alignment - TraesCS5A01G331900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G331900 chr5A 100.000 8099 0 0 1 8099 540394278 540402376 0.000000e+00 14957.0
1 TraesCS5A01G331900 chr5A 81.096 365 66 3 3185 3548 540396426 540396788 1.030000e-73 289.0
2 TraesCS5A01G331900 chr5A 81.096 365 66 3 2149 2511 540397462 540397825 1.030000e-73 289.0
3 TraesCS5A01G331900 chr5B 94.459 1913 73 7 3612 5496 516096325 516098232 0.000000e+00 2915.0
4 TraesCS5A01G331900 chr5B 94.884 1720 56 13 1 1693 516092879 516094593 0.000000e+00 2660.0
5 TraesCS5A01G331900 chr5B 86.615 2189 117 55 5652 7755 516098224 516100321 0.000000e+00 2257.0
6 TraesCS5A01G331900 chr5B 94.881 1387 50 5 1939 3304 516094656 516096042 0.000000e+00 2148.0
7 TraesCS5A01G331900 chr5B 91.209 273 13 1 3340 3612 516096034 516096295 2.150000e-95 361.0
8 TraesCS5A01G331900 chr5B 98.895 181 0 2 1703 1882 269950862 269951041 1.010000e-83 322.0
9 TraesCS5A01G331900 chr5B 95.556 180 5 2 1706 1882 477613767 477613946 1.330000e-72 285.0
10 TraesCS5A01G331900 chr5B 91.509 106 9 0 7965 8070 516100670 516100775 6.550000e-31 147.0
11 TraesCS5A01G331900 chr5D 94.645 1718 61 11 1 1692 426295807 426297519 0.000000e+00 2634.0
12 TraesCS5A01G331900 chr5D 89.992 1299 101 15 4218 5496 426299173 426300462 0.000000e+00 1652.0
13 TraesCS5A01G331900 chr5D 93.461 994 52 9 5652 6636 426300454 426301443 0.000000e+00 1463.0
14 TraesCS5A01G331900 chr5D 88.211 967 76 25 1952 2893 426297564 426298517 0.000000e+00 1120.0
15 TraesCS5A01G331900 chr5D 86.508 756 57 22 7114 7842 426301941 426302678 0.000000e+00 789.0
16 TraesCS5A01G331900 chr5D 87.040 679 45 12 2911 3548 426298503 426299179 0.000000e+00 726.0
17 TraesCS5A01G331900 chr5D 91.457 398 22 5 6688 7075 426301544 426301939 3.330000e-148 536.0
18 TraesCS5A01G331900 chr5D 81.645 681 87 19 2226 2893 426298894 426299549 1.550000e-146 531.0
19 TraesCS5A01G331900 chr5D 86.806 144 10 4 7965 8099 426302937 426303080 1.410000e-32 152.0
20 TraesCS5A01G331900 chr5D 100.000 30 0 0 4188 4217 484705679 484705708 1.000000e-03 56.5
21 TraesCS5A01G331900 chr7D 86.994 346 36 2 1027 1372 8975064 8974728 1.650000e-101 381.0
22 TraesCS5A01G331900 chr7D 88.382 241 24 2 1025 1265 615365841 615365605 3.700000e-73 287.0
23 TraesCS5A01G331900 chr7D 91.195 159 13 1 1494 1652 8974699 8974542 1.770000e-51 215.0
24 TraesCS5A01G331900 chr7D 92.683 82 6 0 1571 1652 615365502 615365421 1.430000e-22 119.0
25 TraesCS5A01G331900 chr3A 85.591 347 40 3 1025 1371 382372527 382372191 1.000000e-93 355.0
26 TraesCS5A01G331900 chr3A 92.405 158 9 3 5497 5652 642124756 642124912 1.060000e-53 222.0
27 TraesCS5A01G331900 chr3A 90.566 159 15 0 1494 1652 382372161 382372003 2.290000e-50 211.0
28 TraesCS5A01G331900 chr1B 98.333 180 2 1 1706 1885 376052759 376052581 1.700000e-81 315.0
29 TraesCS5A01G331900 chr1A 97.175 177 5 0 1706 1882 566336055 566335879 4.750000e-77 300.0
30 TraesCS5A01G331900 chr6B 96.648 179 6 0 1705 1883 592981346 592981524 1.710000e-76 298.0
31 TraesCS5A01G331900 chr6B 96.045 177 7 0 1706 1882 29276810 29276634 1.030000e-73 289.0
32 TraesCS5A01G331900 chr2A 96.610 177 6 0 1706 1882 739853252 739853076 2.210000e-75 294.0
33 TraesCS5A01G331900 chr2A 93.671 158 7 3 5497 5652 15606741 15606585 4.890000e-57 233.0
34 TraesCS5A01G331900 chr7B 96.067 178 6 1 1706 1883 138719403 138719579 1.030000e-73 289.0
35 TraesCS5A01G331900 chr3B 93.258 178 11 1 1706 1882 26756179 26756002 2.240000e-65 261.0
36 TraesCS5A01G331900 chr3B 89.231 65 7 0 4095 4159 828432101 828432037 1.870000e-11 82.4
37 TraesCS5A01G331900 chr2D 89.529 191 19 1 1173 1363 30410090 30410279 2.920000e-59 241.0
38 TraesCS5A01G331900 chr2D 90.506 158 12 3 5497 5652 409309265 409309109 1.070000e-48 206.0
39 TraesCS5A01G331900 chr7A 93.711 159 7 3 5496 5652 77469192 77469035 1.360000e-57 235.0
40 TraesCS5A01G331900 chr3D 90.625 160 10 5 5497 5654 333516172 333516016 2.960000e-49 207.0
41 TraesCS5A01G331900 chr6A 83.974 156 11 7 5497 5652 612531901 612532042 3.940000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G331900 chr5A 540394278 540402376 8098 False 14957 14957 100.000000 1 8099 1 chr5A.!!$F1 8098
1 TraesCS5A01G331900 chr5A 540396426 540397825 1399 False 289 289 81.096000 2149 3548 2 chr5A.!!$F2 1399
2 TraesCS5A01G331900 chr5B 516092879 516100775 7896 False 1748 2915 92.259500 1 8070 6 chr5B.!!$F3 8069
3 TraesCS5A01G331900 chr5D 426295807 426303080 7273 False 1067 2634 88.862778 1 8099 9 chr5D.!!$F2 8098
4 TraesCS5A01G331900 chr7D 8974542 8975064 522 True 298 381 89.094500 1027 1652 2 chr7D.!!$R1 625
5 TraesCS5A01G331900 chr3A 382372003 382372527 524 True 283 355 88.078500 1025 1652 2 chr3A.!!$R1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 910 0.323360 GTCAGCCCAACAAGCCCATA 60.323 55.0 0.0 0.0 0.00 2.74 F
1714 1752 0.984230 AGGAATCTTTCAGTGGCGGA 59.016 50.0 0.0 0.0 0.00 5.54 F
1860 1898 0.031817 CCCATTGCCCCTCCAAAGAT 60.032 55.0 0.0 0.0 0.00 2.40 F
1996 2034 0.249120 TGTGGATACCCGAAGCACTG 59.751 55.0 0.0 0.0 34.29 3.66 F
3561 3672 0.619255 TTGGTTCAGGGGCGGATCTA 60.619 55.0 0.0 0.0 0.00 1.98 F
5491 5666 0.036952 CAAGCTCATGACGTGGGACT 60.037 55.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 1879 0.031817 ATCTTTGGAGGGGCAATGGG 60.032 55.000 0.0 0.00 0.00 4.00 R
3631 3772 0.031449 GATCAGGACGAGTAGGCTGC 59.969 60.000 0.0 0.00 0.00 5.25 R
3778 3919 0.624500 AGCCTCCTGGGGATAAAGCA 60.625 55.000 0.0 0.00 35.12 3.91 R
3816 3957 1.227764 CTGCACACTGCTGGACACT 60.228 57.895 0.0 0.00 45.31 3.55 R
5497 5672 0.174845 TAACACATAGCTTCGCCGCT 59.825 50.000 0.0 3.82 43.83 5.52 R
7334 7605 0.107831 ACACACGCACCAGGTAACAT 59.892 50.000 0.0 0.00 41.41 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.203441 TGAGCTTGGAGTGCAGGGAT 61.203 55.000 0.00 0.00 0.00 3.85
126 127 2.753966 GCGGTAGTCGGCGTAGTCA 61.754 63.158 6.85 0.00 39.69 3.41
740 744 2.582436 GGGAATCCAACGCGAGGA 59.418 61.111 22.99 22.99 39.97 3.71
741 745 1.521681 GGGAATCCAACGCGAGGAG 60.522 63.158 24.34 7.38 38.83 3.69
742 746 2.174319 GGAATCCAACGCGAGGAGC 61.174 63.158 24.34 19.11 38.83 4.70
807 820 1.897037 TAGTGGGATCCTGGGCCTGA 61.897 60.000 12.58 5.33 0.00 3.86
836 850 4.796038 ATGGGCTTGATGACTTCTTTTG 57.204 40.909 0.00 0.00 0.00 2.44
837 851 2.892852 TGGGCTTGATGACTTCTTTTGG 59.107 45.455 0.00 0.00 0.00 3.28
859 873 2.433604 GAGAGATCTGGGCTTGATGACA 59.566 50.000 0.00 0.00 0.00 3.58
889 910 0.323360 GTCAGCCCAACAAGCCCATA 60.323 55.000 0.00 0.00 0.00 2.74
904 926 6.071952 ACAAGCCCATATATCCGCAATAAAAG 60.072 38.462 3.92 0.00 0.00 2.27
931 953 1.125093 TGAAACCCTCGGCTTCCTCA 61.125 55.000 0.00 0.00 0.00 3.86
964 986 2.817396 GCGGGAGAGCAGCAGTTC 60.817 66.667 0.00 0.00 37.05 3.01
1413 1448 2.022129 CACCAAGACCTGCGTCGAC 61.022 63.158 5.18 5.18 44.28 4.20
1479 1514 2.660064 GGATGTCGTGCTCAGGGGT 61.660 63.158 0.00 0.00 0.00 4.95
1685 1721 6.378564 TCCCCGCATTTATCTTGTTTTTCATA 59.621 34.615 0.00 0.00 0.00 2.15
1687 1723 7.169645 CCCCGCATTTATCTTGTTTTTCATATG 59.830 37.037 0.00 0.00 0.00 1.78
1710 1748 7.452880 TGTGATTTTAGGAATCTTTCAGTGG 57.547 36.000 0.00 0.00 0.00 4.00
1711 1749 6.071952 TGTGATTTTAGGAATCTTTCAGTGGC 60.072 38.462 0.00 0.00 0.00 5.01
1712 1750 5.123820 TGATTTTAGGAATCTTTCAGTGGCG 59.876 40.000 0.00 0.00 0.00 5.69
1714 1752 0.984230 AGGAATCTTTCAGTGGCGGA 59.016 50.000 0.00 0.00 0.00 5.54
1715 1753 1.065854 AGGAATCTTTCAGTGGCGGAG 60.066 52.381 0.00 0.00 0.00 4.63
1728 1766 4.883354 CGGAGCTTCATGGGGGCC 62.883 72.222 0.00 0.00 0.00 5.80
1729 1767 3.743017 GGAGCTTCATGGGGGCCA 61.743 66.667 4.39 0.00 38.19 5.36
1730 1768 2.360191 GAGCTTCATGGGGGCCAA 59.640 61.111 4.39 0.00 36.95 4.52
1731 1769 2.037847 AGCTTCATGGGGGCCAAC 59.962 61.111 4.39 0.00 36.95 3.77
1732 1770 3.076916 GCTTCATGGGGGCCAACC 61.077 66.667 4.39 6.97 36.95 3.77
1733 1771 2.772924 CTTCATGGGGGCCAACCT 59.227 61.111 15.84 0.48 36.95 3.50
1734 1772 1.683365 CTTCATGGGGGCCAACCTG 60.683 63.158 15.84 11.47 36.95 4.00
1735 1773 3.236769 TTCATGGGGGCCAACCTGG 62.237 63.158 15.84 8.58 41.55 4.45
1736 1774 4.783501 CATGGGGGCCAACCTGGG 62.784 72.222 15.84 3.09 38.19 4.45
1762 1800 4.637663 CCCCCAGCCCAAGAAAAA 57.362 55.556 0.00 0.00 0.00 1.94
1789 1827 9.490379 AACACCTACTACTCATTAGTTTTTCTG 57.510 33.333 0.00 0.00 41.60 3.02
1790 1828 8.867097 ACACCTACTACTCATTAGTTTTTCTGA 58.133 33.333 0.00 0.00 41.60 3.27
1791 1829 9.141400 CACCTACTACTCATTAGTTTTTCTGAC 57.859 37.037 0.00 0.00 41.60 3.51
1792 1830 8.867097 ACCTACTACTCATTAGTTTTTCTGACA 58.133 33.333 0.00 0.00 41.60 3.58
1793 1831 9.877178 CCTACTACTCATTAGTTTTTCTGACAT 57.123 33.333 0.00 0.00 41.60 3.06
1812 1850 9.109393 TCTGACATATGTTCAGTAAAAATAGCC 57.891 33.333 23.13 4.83 33.57 3.93
1813 1851 9.113838 CTGACATATGTTCAGTAAAAATAGCCT 57.886 33.333 10.30 0.00 0.00 4.58
1821 1859 9.733556 TGTTCAGTAAAAATAGCCTAAATCTCA 57.266 29.630 0.00 0.00 0.00 3.27
1831 1869 7.751768 ATAGCCTAAATCTCATAGTTTTGCC 57.248 36.000 0.00 0.00 0.00 4.52
1832 1870 4.889995 AGCCTAAATCTCATAGTTTTGCCC 59.110 41.667 0.00 0.00 0.00 5.36
1833 1871 4.038042 GCCTAAATCTCATAGTTTTGCCCC 59.962 45.833 0.00 0.00 0.00 5.80
1834 1872 5.449553 CCTAAATCTCATAGTTTTGCCCCT 58.550 41.667 0.00 0.00 0.00 4.79
1835 1873 5.532779 CCTAAATCTCATAGTTTTGCCCCTC 59.467 44.000 0.00 0.00 0.00 4.30
1836 1874 3.584733 ATCTCATAGTTTTGCCCCTCC 57.415 47.619 0.00 0.00 0.00 4.30
1837 1875 2.562296 TCTCATAGTTTTGCCCCTCCT 58.438 47.619 0.00 0.00 0.00 3.69
1838 1876 2.919602 TCTCATAGTTTTGCCCCTCCTT 59.080 45.455 0.00 0.00 0.00 3.36
1839 1877 3.019564 CTCATAGTTTTGCCCCTCCTTG 58.980 50.000 0.00 0.00 0.00 3.61
1840 1878 2.102578 CATAGTTTTGCCCCTCCTTGG 58.897 52.381 0.00 0.00 0.00 3.61
1846 1884 4.079961 GCCCCTCCTTGGCCCATT 62.080 66.667 0.00 0.00 43.33 3.16
1847 1885 2.042639 CCCCTCCTTGGCCCATTG 60.043 66.667 0.00 0.00 0.00 2.82
1848 1886 2.761213 CCCTCCTTGGCCCATTGC 60.761 66.667 0.00 0.00 40.16 3.56
1857 1895 2.284552 GCCCATTGCCCCTCCAAA 60.285 61.111 0.00 0.00 0.00 3.28
1858 1896 2.361567 GCCCATTGCCCCTCCAAAG 61.362 63.158 0.00 0.00 0.00 2.77
1859 1897 1.387737 CCCATTGCCCCTCCAAAGA 59.612 57.895 0.00 0.00 0.00 2.52
1860 1898 0.031817 CCCATTGCCCCTCCAAAGAT 60.032 55.000 0.00 0.00 0.00 2.40
1861 1899 1.623279 CCCATTGCCCCTCCAAAGATT 60.623 52.381 0.00 0.00 0.00 2.40
1862 1900 2.190538 CCATTGCCCCTCCAAAGATTT 58.809 47.619 0.00 0.00 0.00 2.17
1863 1901 2.093341 CCATTGCCCCTCCAAAGATTTG 60.093 50.000 0.00 0.00 37.90 2.32
1873 1911 2.375173 CAAAGATTTGGCCCAAGCTC 57.625 50.000 7.92 0.00 39.73 4.09
1874 1912 1.066645 CAAAGATTTGGCCCAAGCTCC 60.067 52.381 7.92 0.00 39.73 4.70
1875 1913 0.967380 AAGATTTGGCCCAAGCTCCG 60.967 55.000 7.92 0.00 39.73 4.63
1876 1914 3.068729 GATTTGGCCCAAGCTCCGC 62.069 63.158 0.00 0.00 39.73 5.54
1885 1923 1.377725 CAAGCTCCGCCACTGGAAT 60.378 57.895 0.00 0.00 37.64 3.01
1927 1965 8.795842 ATATACTGTGATCCTAGTGTAGTAGC 57.204 38.462 8.71 0.00 0.00 3.58
1928 1966 4.856509 ACTGTGATCCTAGTGTAGTAGCA 58.143 43.478 0.00 0.00 0.00 3.49
1929 1967 4.884744 ACTGTGATCCTAGTGTAGTAGCAG 59.115 45.833 0.00 0.00 0.00 4.24
1930 1968 3.632604 TGTGATCCTAGTGTAGTAGCAGC 59.367 47.826 0.00 0.00 0.00 5.25
1931 1969 3.886505 GTGATCCTAGTGTAGTAGCAGCT 59.113 47.826 0.00 0.00 0.00 4.24
1932 1970 5.064558 GTGATCCTAGTGTAGTAGCAGCTA 58.935 45.833 0.00 0.00 0.00 3.32
1933 1971 5.180492 GTGATCCTAGTGTAGTAGCAGCTAG 59.820 48.000 1.02 0.00 0.00 3.42
1934 1972 4.088056 TCCTAGTGTAGTAGCAGCTAGG 57.912 50.000 1.02 9.06 46.10 3.02
1937 1975 3.655615 AGTGTAGTAGCAGCTAGGACT 57.344 47.619 1.02 1.54 0.00 3.85
1938 1976 3.283751 AGTGTAGTAGCAGCTAGGACTG 58.716 50.000 1.02 0.00 40.80 3.51
1996 2034 0.249120 TGTGGATACCCGAAGCACTG 59.751 55.000 0.00 0.00 34.29 3.66
2031 2071 2.249844 ACACCAAGAAACCTACCACG 57.750 50.000 0.00 0.00 0.00 4.94
2039 2079 5.878116 CCAAGAAACCTACCACGAATTATGA 59.122 40.000 0.00 0.00 0.00 2.15
2076 2116 3.788227 TTACCCAGAGCACATTCAGTT 57.212 42.857 0.00 0.00 0.00 3.16
2079 2119 2.158623 ACCCAGAGCACATTCAGTTGAA 60.159 45.455 0.00 0.00 38.56 2.69
2085 2125 1.532868 GCACATTCAGTTGAAGTCGCT 59.467 47.619 0.74 0.00 37.48 4.93
2129 2172 2.951229 AATCCAACCGAAAGTCCTGT 57.049 45.000 0.00 0.00 0.00 4.00
3553 3664 0.682209 CCATCAGCTTGGTTCAGGGG 60.682 60.000 0.00 0.00 31.74 4.79
3554 3665 1.000396 ATCAGCTTGGTTCAGGGGC 60.000 57.895 0.00 0.00 0.00 5.80
3555 3666 2.826777 ATCAGCTTGGTTCAGGGGCG 62.827 60.000 0.00 0.00 0.00 6.13
3556 3667 4.351054 AGCTTGGTTCAGGGGCGG 62.351 66.667 0.00 0.00 0.00 6.13
3557 3668 4.344865 GCTTGGTTCAGGGGCGGA 62.345 66.667 0.00 0.00 0.00 5.54
3558 3669 2.677228 CTTGGTTCAGGGGCGGAT 59.323 61.111 0.00 0.00 0.00 4.18
3559 3670 1.452108 CTTGGTTCAGGGGCGGATC 60.452 63.158 0.00 0.00 0.00 3.36
3560 3671 1.915078 CTTGGTTCAGGGGCGGATCT 61.915 60.000 0.00 0.00 0.00 2.75
3561 3672 0.619255 TTGGTTCAGGGGCGGATCTA 60.619 55.000 0.00 0.00 0.00 1.98
3562 3673 1.335132 TGGTTCAGGGGCGGATCTAC 61.335 60.000 0.00 0.00 0.00 2.59
3563 3674 1.335132 GGTTCAGGGGCGGATCTACA 61.335 60.000 0.00 0.00 0.00 2.74
3576 3687 0.983378 ATCTACAGGGTGGACAGGGC 60.983 60.000 0.00 0.00 0.00 5.19
3618 3759 3.075148 GGTCAGTCTGTCTAAAAAGCCC 58.925 50.000 0.00 0.00 0.00 5.19
3627 3768 2.364002 GTCTAAAAAGCCCACCAAGCAA 59.636 45.455 0.00 0.00 0.00 3.91
3646 3787 0.978146 ATTGGCAGCCTACTCGTCCT 60.978 55.000 14.15 0.00 0.00 3.85
3649 3790 1.395826 GGCAGCCTACTCGTCCTGAT 61.396 60.000 3.29 0.00 0.00 2.90
3652 3793 0.820074 AGCCTACTCGTCCTGATCCG 60.820 60.000 0.00 0.00 0.00 4.18
3654 3795 1.101635 CCTACTCGTCCTGATCCGCA 61.102 60.000 0.00 0.00 0.00 5.69
3719 3860 3.506059 CTATGGTCTGCGCTCCGGG 62.506 68.421 9.73 0.00 0.00 5.73
3727 3868 2.829458 GCGCTCCGGGTCTCTACT 60.829 66.667 0.00 0.00 0.00 2.57
3770 3911 3.116531 GAACGCCGCGGCTTTAGT 61.117 61.111 43.60 32.12 39.32 2.24
3774 3915 2.513897 GCCGCGGCTTTAGTGGAT 60.514 61.111 41.71 0.00 41.54 3.41
3776 3917 1.449601 CCGCGGCTTTAGTGGATGT 60.450 57.895 14.67 0.00 41.54 3.06
3778 3919 1.019278 CGCGGCTTTAGTGGATGTGT 61.019 55.000 0.00 0.00 0.00 3.72
3786 3927 5.449177 GGCTTTAGTGGATGTGTGCTTTATC 60.449 44.000 0.00 0.00 0.00 1.75
3797 3938 0.624500 TGCTTTATCCCCAGGAGGCT 60.625 55.000 0.00 0.00 34.05 4.58
3893 4034 3.516586 TGGTTGTCCTCAGACCTCAATA 58.483 45.455 0.00 0.00 42.81 1.90
3894 4035 3.260884 TGGTTGTCCTCAGACCTCAATAC 59.739 47.826 0.00 0.00 42.81 1.89
3904 4045 2.434702 AGACCTCAATACCGTCCCATTC 59.565 50.000 0.00 0.00 0.00 2.67
3905 4046 2.169769 GACCTCAATACCGTCCCATTCA 59.830 50.000 0.00 0.00 0.00 2.57
3916 4057 6.658188 ACCGTCCCATTCAAAAATTTCTTA 57.342 33.333 0.00 0.00 0.00 2.10
3988 4129 2.421775 TGTGTGCGTTTTGACATTGTCT 59.578 40.909 17.26 0.00 33.15 3.41
4064 4205 7.178983 TCCAATTAGGATGCAAAATTCAGACTT 59.821 33.333 0.00 0.00 43.07 3.01
4065 4206 7.820872 CCAATTAGGATGCAAAATTCAGACTTT 59.179 33.333 0.00 0.00 41.22 2.66
4150 4291 1.321474 ATTAGTCCATTGGCATGCCG 58.679 50.000 30.87 17.14 39.42 5.69
4168 4309 5.968528 TGCCGTATTTGTTATCCAACTTT 57.031 34.783 0.00 0.00 35.56 2.66
4209 4350 5.428253 TCCTGTTTCAAAATCCTAGATCCG 58.572 41.667 0.00 0.00 0.00 4.18
4244 4385 7.342581 TGGTTGCCACTATAATTCATCACTTA 58.657 34.615 0.00 0.00 0.00 2.24
4429 4572 0.693049 GAGGCTGGAGACCTTTTCCA 59.307 55.000 0.00 0.00 42.30 3.53
4472 4615 5.506317 GGTGAGTATTGCATCATTTGGCTAC 60.506 44.000 0.00 0.00 0.00 3.58
4473 4616 5.297776 GTGAGTATTGCATCATTTGGCTACT 59.702 40.000 0.00 0.00 0.00 2.57
4474 4617 5.887598 TGAGTATTGCATCATTTGGCTACTT 59.112 36.000 0.00 0.00 0.00 2.24
4475 4618 7.012327 GTGAGTATTGCATCATTTGGCTACTTA 59.988 37.037 0.00 0.00 0.00 2.24
4507 4674 7.797121 AATAAAATGAGTTTCTTCACCCCAT 57.203 32.000 0.00 0.00 0.00 4.00
4543 4710 2.706190 ACAAGCCTTACAGTTCAGGACT 59.294 45.455 3.05 0.00 39.89 3.85
4669 4837 6.476378 ACACTGAGAAGCATACCAAAGTAAT 58.524 36.000 0.00 0.00 30.59 1.89
4787 4956 5.971202 CGCTTCTGTTGTCACTAAAAACATT 59.029 36.000 0.00 0.00 33.60 2.71
4830 5001 3.642848 AGTGGAAACGGGACTTGTAACTA 59.357 43.478 0.00 0.00 0.00 2.24
4850 5021 6.702449 ACTATTATGCCTGGATCCACATTA 57.298 37.500 19.76 13.11 0.00 1.90
4854 5025 7.860649 ATTATGCCTGGATCCACATTATTTT 57.139 32.000 19.76 2.07 0.00 1.82
4885 5060 9.234827 TGATGTCACAATCATGATTTCTTAAGT 57.765 29.630 18.41 9.35 31.58 2.24
5141 5316 6.074648 TGAAAACCTATTTGGATCTGTTGGT 58.925 36.000 0.00 0.00 39.71 3.67
5258 5433 7.530010 TGATAGTTGCTGAGCTAAATGTTTTC 58.470 34.615 5.83 0.00 0.00 2.29
5268 5443 8.579850 TGAGCTAAATGTTTTCCTATGTTGAT 57.420 30.769 0.00 0.00 0.00 2.57
5371 5546 7.013083 GGAGTATAGCTGCAGTACTACAGTTTA 59.987 40.741 21.53 15.27 36.26 2.01
5487 5662 0.952497 ACTGCAAGCTCATGACGTGG 60.952 55.000 0.00 0.00 37.60 4.94
5488 5663 1.642037 CTGCAAGCTCATGACGTGGG 61.642 60.000 0.00 0.00 0.00 4.61
5489 5664 1.375908 GCAAGCTCATGACGTGGGA 60.376 57.895 0.00 0.00 0.00 4.37
5490 5665 1.639298 GCAAGCTCATGACGTGGGAC 61.639 60.000 0.00 0.00 0.00 4.46
5491 5666 0.036952 CAAGCTCATGACGTGGGACT 60.037 55.000 0.00 0.00 0.00 3.85
5492 5667 0.687354 AAGCTCATGACGTGGGACTT 59.313 50.000 0.00 0.00 0.00 3.01
5493 5668 0.036952 AGCTCATGACGTGGGACTTG 60.037 55.000 0.00 0.00 0.00 3.16
5494 5669 1.639298 GCTCATGACGTGGGACTTGC 61.639 60.000 0.00 0.00 0.00 4.01
5495 5670 0.320683 CTCATGACGTGGGACTTGCA 60.321 55.000 0.00 0.00 0.00 4.08
5496 5671 0.602638 TCATGACGTGGGACTTGCAC 60.603 55.000 0.00 0.00 0.00 4.57
5497 5672 0.884259 CATGACGTGGGACTTGCACA 60.884 55.000 0.00 0.00 0.00 4.57
5498 5673 0.603707 ATGACGTGGGACTTGCACAG 60.604 55.000 0.00 0.00 0.00 3.66
5499 5674 2.591715 ACGTGGGACTTGCACAGC 60.592 61.111 0.00 0.00 0.00 4.40
5500 5675 3.716006 CGTGGGACTTGCACAGCG 61.716 66.667 0.00 0.00 0.00 5.18
5501 5676 3.357079 GTGGGACTTGCACAGCGG 61.357 66.667 0.00 0.00 0.00 5.52
5505 5680 3.345808 GACTTGCACAGCGGCGAA 61.346 61.111 12.98 0.00 36.28 4.70
5506 5681 3.300667 GACTTGCACAGCGGCGAAG 62.301 63.158 12.98 6.65 36.28 3.79
5524 5699 3.859961 CGAAGCTATGTGTTAGTCTGTGG 59.140 47.826 0.00 0.00 0.00 4.17
5525 5700 3.895232 AGCTATGTGTTAGTCTGTGGG 57.105 47.619 0.00 0.00 0.00 4.61
5526 5701 3.441101 AGCTATGTGTTAGTCTGTGGGA 58.559 45.455 0.00 0.00 0.00 4.37
5527 5702 4.033709 AGCTATGTGTTAGTCTGTGGGAT 58.966 43.478 0.00 0.00 0.00 3.85
5528 5703 4.100189 AGCTATGTGTTAGTCTGTGGGATC 59.900 45.833 0.00 0.00 0.00 3.36
5529 5704 4.141937 GCTATGTGTTAGTCTGTGGGATCA 60.142 45.833 0.00 0.00 0.00 2.92
5530 5705 3.961480 TGTGTTAGTCTGTGGGATCAG 57.039 47.619 0.00 0.00 36.85 2.90
5531 5706 3.239449 TGTGTTAGTCTGTGGGATCAGT 58.761 45.455 0.00 0.00 36.85 3.41
5532 5707 3.646162 TGTGTTAGTCTGTGGGATCAGTT 59.354 43.478 0.00 0.00 36.85 3.16
5533 5708 3.997021 GTGTTAGTCTGTGGGATCAGTTG 59.003 47.826 0.00 0.00 36.85 3.16
5534 5709 3.901222 TGTTAGTCTGTGGGATCAGTTGA 59.099 43.478 0.00 0.00 36.85 3.18
5535 5710 4.246458 GTTAGTCTGTGGGATCAGTTGAC 58.754 47.826 0.00 0.00 36.85 3.18
5536 5711 1.625818 AGTCTGTGGGATCAGTTGACC 59.374 52.381 0.00 0.00 36.85 4.02
5537 5712 0.984230 TCTGTGGGATCAGTTGACCC 59.016 55.000 10.86 10.86 43.51 4.46
5542 5717 3.558674 GGATCAGTTGACCCCACAG 57.441 57.895 0.00 0.00 0.00 3.66
5543 5718 0.678048 GGATCAGTTGACCCCACAGC 60.678 60.000 0.00 0.00 0.00 4.40
5544 5719 0.326264 GATCAGTTGACCCCACAGCT 59.674 55.000 0.00 0.00 0.00 4.24
5545 5720 0.773644 ATCAGTTGACCCCACAGCTT 59.226 50.000 0.00 0.00 0.00 3.74
5546 5721 0.550914 TCAGTTGACCCCACAGCTTT 59.449 50.000 0.00 0.00 0.00 3.51
5547 5722 1.064017 TCAGTTGACCCCACAGCTTTT 60.064 47.619 0.00 0.00 0.00 2.27
5548 5723 1.756538 CAGTTGACCCCACAGCTTTTT 59.243 47.619 0.00 0.00 0.00 1.94
5549 5724 2.955660 CAGTTGACCCCACAGCTTTTTA 59.044 45.455 0.00 0.00 0.00 1.52
5550 5725 3.004734 CAGTTGACCCCACAGCTTTTTAG 59.995 47.826 0.00 0.00 0.00 1.85
5551 5726 3.117663 AGTTGACCCCACAGCTTTTTAGA 60.118 43.478 0.00 0.00 0.00 2.10
5552 5727 3.586470 TGACCCCACAGCTTTTTAGAA 57.414 42.857 0.00 0.00 0.00 2.10
5553 5728 3.904717 TGACCCCACAGCTTTTTAGAAA 58.095 40.909 0.00 0.00 0.00 2.52
5554 5729 4.282496 TGACCCCACAGCTTTTTAGAAAA 58.718 39.130 0.00 0.00 0.00 2.29
5555 5730 4.898861 TGACCCCACAGCTTTTTAGAAAAT 59.101 37.500 0.00 0.00 0.00 1.82
5556 5731 6.071984 TGACCCCACAGCTTTTTAGAAAATA 58.928 36.000 0.00 0.00 0.00 1.40
5557 5732 6.551601 TGACCCCACAGCTTTTTAGAAAATAA 59.448 34.615 0.00 0.00 0.00 1.40
5558 5733 6.993079 ACCCCACAGCTTTTTAGAAAATAAG 58.007 36.000 0.00 0.00 0.00 1.73
5559 5734 5.869344 CCCCACAGCTTTTTAGAAAATAAGC 59.131 40.000 0.00 0.00 44.96 3.09
5560 5735 5.869344 CCCACAGCTTTTTAGAAAATAAGCC 59.131 40.000 8.90 0.00 45.43 4.35
5561 5736 6.295292 CCCACAGCTTTTTAGAAAATAAGCCT 60.295 38.462 8.90 0.00 45.43 4.58
5562 5737 7.093945 CCCACAGCTTTTTAGAAAATAAGCCTA 60.094 37.037 8.90 0.00 45.43 3.93
5563 5738 8.303876 CCACAGCTTTTTAGAAAATAAGCCTAA 58.696 33.333 8.90 0.00 45.43 2.69
5564 5739 9.691362 CACAGCTTTTTAGAAAATAAGCCTAAA 57.309 29.630 8.90 0.00 45.43 1.85
5574 5749 8.232913 AGAAAATAAGCCTAAAACACTGTTCA 57.767 30.769 0.00 0.00 0.00 3.18
5575 5750 8.352942 AGAAAATAAGCCTAAAACACTGTTCAG 58.647 33.333 0.00 0.00 0.00 3.02
5576 5751 7.582667 AAATAAGCCTAAAACACTGTTCAGT 57.417 32.000 0.00 0.00 0.00 3.41
5577 5752 8.685838 AAATAAGCCTAAAACACTGTTCAGTA 57.314 30.769 5.11 0.00 0.00 2.74
5578 5753 7.668525 ATAAGCCTAAAACACTGTTCAGTAC 57.331 36.000 5.11 0.00 0.00 2.73
5579 5754 5.291905 AGCCTAAAACACTGTTCAGTACT 57.708 39.130 5.11 0.00 0.00 2.73
5580 5755 5.057149 AGCCTAAAACACTGTTCAGTACTG 58.943 41.667 17.17 17.17 0.00 2.74
5581 5756 4.814771 GCCTAAAACACTGTTCAGTACTGT 59.185 41.667 21.99 0.00 39.24 3.55
5582 5757 5.296035 GCCTAAAACACTGTTCAGTACTGTT 59.704 40.000 21.99 8.54 36.87 3.16
5583 5758 6.511282 GCCTAAAACACTGTTCAGTACTGTTC 60.511 42.308 21.99 15.75 36.87 3.18
5584 5759 6.537301 CCTAAAACACTGTTCAGTACTGTTCA 59.463 38.462 21.99 18.91 36.87 3.18
5585 5760 7.226720 CCTAAAACACTGTTCAGTACTGTTCAT 59.773 37.037 21.99 9.01 36.87 2.57
5586 5761 9.256477 CTAAAACACTGTTCAGTACTGTTCATA 57.744 33.333 21.99 0.00 36.87 2.15
5587 5762 7.478520 AAACACTGTTCAGTACTGTTCATAC 57.521 36.000 21.99 13.25 36.87 2.39
5588 5763 6.406692 ACACTGTTCAGTACTGTTCATACT 57.593 37.500 21.99 6.14 36.87 2.12
5627 5802 4.396357 AAAATACCATTGACCCCACAGA 57.604 40.909 0.00 0.00 0.00 3.41
5628 5803 4.396357 AAATACCATTGACCCCACAGAA 57.604 40.909 0.00 0.00 0.00 3.02
5629 5804 4.396357 AATACCATTGACCCCACAGAAA 57.604 40.909 0.00 0.00 0.00 2.52
5630 5805 1.995376 ACCATTGACCCCACAGAAAC 58.005 50.000 0.00 0.00 0.00 2.78
5631 5806 1.499007 ACCATTGACCCCACAGAAACT 59.501 47.619 0.00 0.00 0.00 2.66
5632 5807 2.091333 ACCATTGACCCCACAGAAACTT 60.091 45.455 0.00 0.00 0.00 2.66
5633 5808 2.965147 CCATTGACCCCACAGAAACTTT 59.035 45.455 0.00 0.00 0.00 2.66
5634 5809 4.148838 CCATTGACCCCACAGAAACTTTA 58.851 43.478 0.00 0.00 0.00 1.85
5635 5810 4.218417 CCATTGACCCCACAGAAACTTTAG 59.782 45.833 0.00 0.00 0.00 1.85
5636 5811 3.502123 TGACCCCACAGAAACTTTAGG 57.498 47.619 0.00 0.00 0.00 2.69
5637 5812 2.160205 GACCCCACAGAAACTTTAGGC 58.840 52.381 0.00 0.00 0.00 3.93
5638 5813 1.780919 ACCCCACAGAAACTTTAGGCT 59.219 47.619 0.00 0.00 0.00 4.58
5639 5814 2.162681 CCCCACAGAAACTTTAGGCTG 58.837 52.381 0.00 0.00 34.65 4.85
5640 5815 2.162681 CCCACAGAAACTTTAGGCTGG 58.837 52.381 0.00 0.00 32.82 4.85
5641 5816 1.541588 CCACAGAAACTTTAGGCTGGC 59.458 52.381 0.00 0.00 32.82 4.85
5642 5817 1.541588 CACAGAAACTTTAGGCTGGCC 59.458 52.381 3.00 3.00 32.82 5.36
5644 5819 2.087646 CAGAAACTTTAGGCTGGCCTC 58.912 52.381 18.06 2.13 44.43 4.70
5645 5820 1.087501 GAAACTTTAGGCTGGCCTCG 58.912 55.000 18.06 10.13 44.43 4.63
5646 5821 0.960861 AAACTTTAGGCTGGCCTCGC 60.961 55.000 18.06 6.69 44.43 5.03
5846 6022 6.862209 TGTGAAGCATGTTTTCTAAAGTTGT 58.138 32.000 11.61 0.00 0.00 3.32
5882 6062 3.565307 TCCTTGTGTCTGGCTTCAAAAT 58.435 40.909 0.00 0.00 0.00 1.82
6016 6196 8.110860 AGTTAGAATATGACAAAACCTTGGTG 57.889 34.615 0.00 0.00 36.82 4.17
6054 6234 8.916062 TGCATGGTGAATAGAAAATATCAATGT 58.084 29.630 0.00 0.00 0.00 2.71
6091 6271 9.052759 ACCTACAGTTTGTTTCTGTGTAAATAG 57.947 33.333 8.54 0.00 44.41 1.73
6096 6276 9.599322 CAGTTTGTTTCTGTGTAAATAGATGTC 57.401 33.333 0.00 0.00 0.00 3.06
6119 6299 7.770433 TGTCCCTTATTTCAGTATTCTCATGTG 59.230 37.037 0.00 0.00 0.00 3.21
6334 6517 3.561725 CGGCAGTCAGTTCTTCTCTTTTT 59.438 43.478 0.00 0.00 0.00 1.94
6398 6593 4.164294 CTGCTATTCTTCAGTTTTGCTGC 58.836 43.478 0.00 0.00 44.66 5.25
6399 6594 3.822735 TGCTATTCTTCAGTTTTGCTGCT 59.177 39.130 0.00 0.00 44.66 4.24
6414 6609 2.159114 TGCTGCTACGCATCTGATGTTA 60.159 45.455 18.19 9.52 38.13 2.41
6474 6670 3.075882 TCCAGGTTGAGTGGAATCCAAAT 59.924 43.478 2.31 0.00 41.32 2.32
6475 6671 3.445096 CCAGGTTGAGTGGAATCCAAATC 59.555 47.826 2.31 6.17 37.23 2.17
6492 6688 5.923204 CCAAATCTGGAGACTGTATTAGCT 58.077 41.667 0.00 0.00 46.92 3.32
6542 6738 1.636148 TGGGACGTTAGCAGGTAAGT 58.364 50.000 0.00 0.00 0.00 2.24
6586 6784 6.630444 ATTCTATCTTACATTTGCAGCTGG 57.370 37.500 17.12 0.00 0.00 4.85
6587 6785 3.879295 TCTATCTTACATTTGCAGCTGGC 59.121 43.478 17.12 8.54 45.13 4.85
6600 6798 2.888594 CAGCTGGCATCTCATTTTTGG 58.111 47.619 5.57 0.00 0.00 3.28
6604 6802 2.014335 GGCATCTCATTTTTGGTGCC 57.986 50.000 1.36 1.36 44.37 5.01
6606 6804 1.632422 CATCTCATTTTTGGTGCCGC 58.368 50.000 0.00 0.00 0.00 6.53
6617 6815 1.674322 GGTGCCGCCACACTGTTAT 60.674 57.895 0.00 0.00 43.88 1.89
6624 6822 2.347452 CCGCCACACTGTTATTTACTCG 59.653 50.000 0.00 0.00 0.00 4.18
6636 6834 6.110707 TGTTATTTACTCGTGAATCCTTCCC 58.889 40.000 0.00 0.00 0.00 3.97
6638 6836 4.627284 TTTACTCGTGAATCCTTCCCAA 57.373 40.909 0.00 0.00 0.00 4.12
6640 6838 3.059352 ACTCGTGAATCCTTCCCAAAG 57.941 47.619 0.00 0.00 0.00 2.77
6657 6855 5.782893 CCAAAGGGAAACAAACATACTGA 57.217 39.130 0.00 0.00 35.59 3.41
6659 6857 6.158598 CCAAAGGGAAACAAACATACTGATG 58.841 40.000 0.00 0.00 36.15 3.07
6664 6862 5.393962 GGAAACAAACATACTGATGTGAGC 58.606 41.667 0.00 0.00 45.93 4.26
6665 6863 5.182001 GGAAACAAACATACTGATGTGAGCT 59.818 40.000 0.00 0.00 45.93 4.09
6666 6864 5.618056 AACAAACATACTGATGTGAGCTG 57.382 39.130 0.00 0.00 45.93 4.24
6667 6865 4.898320 ACAAACATACTGATGTGAGCTGA 58.102 39.130 0.00 0.00 45.93 4.26
6668 6866 4.934001 ACAAACATACTGATGTGAGCTGAG 59.066 41.667 0.00 0.00 45.93 3.35
6669 6867 5.173664 CAAACATACTGATGTGAGCTGAGA 58.826 41.667 0.00 0.00 45.93 3.27
6670 6868 5.611128 AACATACTGATGTGAGCTGAGAT 57.389 39.130 0.00 0.00 45.93 2.75
6672 6870 5.358090 ACATACTGATGTGAGCTGAGATTG 58.642 41.667 0.00 0.00 44.90 2.67
6674 6872 3.859443 ACTGATGTGAGCTGAGATTGAC 58.141 45.455 0.00 0.00 0.00 3.18
6675 6873 3.196463 CTGATGTGAGCTGAGATTGACC 58.804 50.000 0.00 0.00 0.00 4.02
6676 6874 2.093288 TGATGTGAGCTGAGATTGACCC 60.093 50.000 0.00 0.00 0.00 4.46
6677 6875 1.351076 TGTGAGCTGAGATTGACCCA 58.649 50.000 0.00 0.00 0.00 4.51
6678 6876 1.699083 TGTGAGCTGAGATTGACCCAA 59.301 47.619 0.00 0.00 0.00 4.12
6679 6877 2.106338 TGTGAGCTGAGATTGACCCAAA 59.894 45.455 0.00 0.00 0.00 3.28
6681 6879 3.190118 GTGAGCTGAGATTGACCCAAAAG 59.810 47.826 0.00 0.00 0.00 2.27
6682 6880 3.072915 TGAGCTGAGATTGACCCAAAAGA 59.927 43.478 0.00 0.00 0.00 2.52
6683 6881 4.263639 TGAGCTGAGATTGACCCAAAAGAT 60.264 41.667 0.00 0.00 0.00 2.40
6684 6882 4.015084 AGCTGAGATTGACCCAAAAGATG 58.985 43.478 0.00 0.00 0.00 2.90
6685 6883 4.012374 GCTGAGATTGACCCAAAAGATGA 58.988 43.478 0.00 0.00 0.00 2.92
6686 6884 4.460382 GCTGAGATTGACCCAAAAGATGAA 59.540 41.667 0.00 0.00 0.00 2.57
6696 6943 6.205076 TGACCCAAAAGATGAATTGCATTTTG 59.795 34.615 10.91 10.91 37.34 2.44
6699 6946 7.718753 ACCCAAAAGATGAATTGCATTTTGTAA 59.281 29.630 14.83 0.00 35.89 2.41
6704 6951 7.230849 AGATGAATTGCATTTTGTAACCTCA 57.769 32.000 0.00 0.00 37.34 3.86
6748 6995 1.137086 GCATCCACGGTCACTATCTGT 59.863 52.381 0.00 0.00 0.00 3.41
6773 7020 4.654091 AAAGATGAACACCTGGTTGTTG 57.346 40.909 15.96 0.63 39.88 3.33
6796 7043 1.271054 TGGACTGCCTTTGAGAGCTTC 60.271 52.381 0.00 0.00 34.31 3.86
6823 7073 6.324770 TGACTTGACAGATATGCTATCTTCCA 59.675 38.462 3.73 3.20 0.00 3.53
6862 7116 4.880886 TTTTGTCATATGCTGTCCATCG 57.119 40.909 0.00 0.00 35.34 3.84
7061 7315 0.179161 AGCATCTACAGCGACGACAC 60.179 55.000 0.00 0.00 37.01 3.67
7076 7336 0.455410 GACACCAGCAACAGCAACAA 59.545 50.000 0.00 0.00 0.00 2.83
7108 7368 1.621317 TGTCCACATAAGAAGACGCCA 59.379 47.619 0.00 0.00 31.75 5.69
7120 7380 2.518349 ACGCCACCAACCCAACTG 60.518 61.111 0.00 0.00 0.00 3.16
7131 7391 1.668826 ACCCAACTGCTTCCCTGATA 58.331 50.000 0.00 0.00 0.00 2.15
7165 7436 2.866762 GGACATGGATCGTAGTCTTTGC 59.133 50.000 0.00 0.00 0.00 3.68
7175 7446 2.671351 CGTAGTCTTTGCGTGAGTGGAT 60.671 50.000 0.00 0.00 0.00 3.41
7261 7532 0.106894 CGTTTGGCCCCTAGATCCTC 59.893 60.000 0.00 0.00 0.00 3.71
7323 7594 0.961019 AACATTTGTGCGTCCATGCT 59.039 45.000 0.00 0.00 35.36 3.79
7334 7605 1.675714 CGTCCATGCTGAAGCCTGTTA 60.676 52.381 6.80 0.00 41.18 2.41
7365 7645 1.062365 CGTGTGTGTGCCTGTTGTG 59.938 57.895 0.00 0.00 0.00 3.33
7441 7757 0.826715 ACGGTCCACATCATCCTCTG 59.173 55.000 0.00 0.00 0.00 3.35
7448 7764 2.681848 CCACATCATCCTCTGCTGAAAC 59.318 50.000 0.00 0.00 0.00 2.78
7452 7768 3.606595 TCATCCTCTGCTGAAACTCTG 57.393 47.619 0.00 0.00 0.00 3.35
7453 7769 2.008329 CATCCTCTGCTGAAACTCTGC 58.992 52.381 0.00 0.00 41.04 4.26
7454 7770 1.346062 TCCTCTGCTGAAACTCTGCT 58.654 50.000 7.00 0.00 41.21 4.24
7455 7771 1.696336 TCCTCTGCTGAAACTCTGCTT 59.304 47.619 7.00 0.00 41.21 3.91
7456 7772 2.899900 TCCTCTGCTGAAACTCTGCTTA 59.100 45.455 7.00 0.00 41.21 3.09
7457 7773 3.517100 TCCTCTGCTGAAACTCTGCTTAT 59.483 43.478 7.00 0.00 41.21 1.73
7458 7774 3.622163 CCTCTGCTGAAACTCTGCTTATG 59.378 47.826 7.00 0.00 41.21 1.90
7459 7775 4.252073 CTCTGCTGAAACTCTGCTTATGT 58.748 43.478 7.00 0.00 41.21 2.29
7460 7776 3.999001 TCTGCTGAAACTCTGCTTATGTG 59.001 43.478 7.00 0.00 41.21 3.21
7464 7782 3.325870 TGAAACTCTGCTTATGTGGTCG 58.674 45.455 0.00 0.00 0.00 4.79
7641 7974 3.136123 ACGCCATGTCATGCCTGC 61.136 61.111 7.35 5.02 0.00 4.85
7642 7975 3.896133 CGCCATGTCATGCCTGCC 61.896 66.667 7.35 0.00 0.00 4.85
7643 7976 2.756691 GCCATGTCATGCCTGCCA 60.757 61.111 7.35 0.00 0.00 4.92
7644 7977 3.072486 GCCATGTCATGCCTGCCAC 62.072 63.158 7.35 0.00 0.00 5.01
7645 7978 1.379443 CCATGTCATGCCTGCCACT 60.379 57.895 7.35 0.00 0.00 4.00
7646 7979 1.663379 CCATGTCATGCCTGCCACTG 61.663 60.000 7.35 0.00 0.00 3.66
7648 7981 3.446570 GTCATGCCTGCCACTGCC 61.447 66.667 0.00 0.00 36.33 4.85
7649 7982 3.969119 TCATGCCTGCCACTGCCA 61.969 61.111 0.00 0.00 36.33 4.92
7650 7983 3.449227 CATGCCTGCCACTGCCAG 61.449 66.667 0.00 0.00 36.33 4.85
7651 7984 3.975591 ATGCCTGCCACTGCCAGT 61.976 61.111 0.00 0.00 36.33 4.00
7652 7985 2.605607 ATGCCTGCCACTGCCAGTA 61.606 57.895 0.00 0.00 36.33 2.74
7653 7986 1.929860 ATGCCTGCCACTGCCAGTAT 61.930 55.000 0.00 0.00 36.33 2.12
7654 7987 2.117156 GCCTGCCACTGCCAGTATG 61.117 63.158 0.00 0.00 36.33 2.39
7655 7988 2.117156 CCTGCCACTGCCAGTATGC 61.117 63.158 10.66 10.66 36.33 3.14
7656 7989 1.377594 CTGCCACTGCCAGTATGCA 60.378 57.895 17.21 17.21 39.37 3.96
7722 8056 4.754667 TGCTGCTCTGCTCTGCCG 62.755 66.667 0.00 0.00 0.00 5.69
7762 8096 4.451150 GCATCGACGTGCCCCTGA 62.451 66.667 0.00 0.00 39.18 3.86
7787 8121 0.659417 GCGACGACGTCTTTGACTCA 60.659 55.000 24.36 0.00 41.98 3.41
7788 8122 1.965083 CGACGACGTCTTTGACTCAT 58.035 50.000 24.36 0.00 34.56 2.90
7789 8123 1.905687 CGACGACGTCTTTGACTCATC 59.094 52.381 24.36 0.00 34.56 2.92
7790 8124 2.412977 CGACGACGTCTTTGACTCATCT 60.413 50.000 24.36 0.00 34.56 2.90
7791 8125 2.911723 GACGACGTCTTTGACTCATCTG 59.088 50.000 20.52 0.00 0.00 2.90
7792 8126 2.254459 CGACGTCTTTGACTCATCTGG 58.746 52.381 14.70 0.00 0.00 3.86
7793 8127 1.996191 GACGTCTTTGACTCATCTGGC 59.004 52.381 8.70 0.00 0.00 4.85
7794 8128 1.344438 ACGTCTTTGACTCATCTGGCA 59.656 47.619 0.00 0.00 0.00 4.92
7795 8129 1.998315 CGTCTTTGACTCATCTGGCAG 59.002 52.381 8.58 8.58 0.00 4.85
7796 8130 1.736681 GTCTTTGACTCATCTGGCAGC 59.263 52.381 10.34 0.00 0.00 5.25
7797 8131 1.093159 CTTTGACTCATCTGGCAGCC 58.907 55.000 10.34 3.66 0.00 4.85
7798 8132 0.322816 TTTGACTCATCTGGCAGCCC 60.323 55.000 9.64 0.00 0.00 5.19
7799 8133 1.203441 TTGACTCATCTGGCAGCCCT 61.203 55.000 9.64 0.00 0.00 5.19
7832 8166 1.227853 AGCCTCGGTTGGTCAACAC 60.228 57.895 14.69 4.70 42.85 3.32
7842 8176 2.594962 GGTCAACACCAGACGCGTG 61.595 63.158 20.70 4.59 43.17 5.34
7843 8177 2.964925 TCAACACCAGACGCGTGC 60.965 61.111 20.70 8.74 34.45 5.34
7844 8178 4.354212 CAACACCAGACGCGTGCG 62.354 66.667 20.70 13.39 46.03 5.34
7850 8184 2.127270 CAGACGCGTGCGCAAATT 60.127 55.556 20.70 0.00 44.19 1.82
7851 8185 2.127270 AGACGCGTGCGCAAATTG 60.127 55.556 20.70 4.98 44.19 2.32
7852 8186 2.426752 GACGCGTGCGCAAATTGT 60.427 55.556 20.70 8.83 44.19 2.71
7855 8189 1.142778 ACGCGTGCGCAAATTGTTTT 61.143 45.000 14.00 0.00 44.19 2.43
7883 8397 3.931578 ACAGTATCTTGTGCTTGGTCTC 58.068 45.455 0.00 0.00 0.00 3.36
7889 8403 0.601046 TTGTGCTTGGTCTCTCTGCG 60.601 55.000 0.00 0.00 0.00 5.18
7892 8406 2.099431 GCTTGGTCTCTCTGCGCTG 61.099 63.158 9.73 8.88 0.00 5.18
7893 8407 1.447489 CTTGGTCTCTCTGCGCTGG 60.447 63.158 14.70 4.50 0.00 4.85
7898 8412 1.028905 GTCTCTCTGCGCTGGAGTAT 58.971 55.000 22.87 0.00 33.06 2.12
7899 8413 1.028130 TCTCTCTGCGCTGGAGTATG 58.972 55.000 22.87 16.47 33.06 2.39
7900 8414 0.597118 CTCTCTGCGCTGGAGTATGC 60.597 60.000 22.87 0.00 33.06 3.14
7901 8415 1.593750 CTCTGCGCTGGAGTATGCC 60.594 63.158 14.70 0.00 0.00 4.40
7902 8416 2.025767 CTCTGCGCTGGAGTATGCCT 62.026 60.000 14.70 0.00 0.00 4.75
8041 8555 5.975693 AATAAGGAAAAGAAATGCCACGA 57.024 34.783 0.00 0.00 0.00 4.35
8052 8566 1.148310 ATGCCACGACACGAGAAAAG 58.852 50.000 0.00 0.00 0.00 2.27
8075 8589 4.106925 GCTCCCTCCCTGCCTGTG 62.107 72.222 0.00 0.00 0.00 3.66
8076 8590 4.106925 CTCCCTCCCTGCCTGTGC 62.107 72.222 0.00 0.00 38.26 4.57
8079 8593 3.736224 CCTCCCTGCCTGTGCCAT 61.736 66.667 0.00 0.00 36.33 4.40
8080 8594 2.439701 CTCCCTGCCTGTGCCATG 60.440 66.667 0.00 0.00 36.33 3.66
8081 8595 3.259314 TCCCTGCCTGTGCCATGT 61.259 61.111 0.00 0.00 36.33 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.892425 GACTTCGGCGCATCCCTG 60.892 66.667 10.83 0.00 0.00 4.45
374 375 0.175989 CTCGCTCCCCAACTTCCTAC 59.824 60.000 0.00 0.00 0.00 3.18
375 376 1.614241 GCTCGCTCCCCAACTTCCTA 61.614 60.000 0.00 0.00 0.00 2.94
741 745 1.353804 CTAGTCGACGAGCCTCTGC 59.646 63.158 12.87 0.00 37.95 4.26
742 746 1.353804 GCTAGTCGACGAGCCTCTG 59.646 63.158 32.74 7.59 38.44 3.35
753 766 0.526662 CCTAATAGCCCGGCTAGTCG 59.473 60.000 22.25 15.99 44.66 4.18
776 789 0.683504 TCCCACTAAGAGGACCTCGC 60.684 60.000 15.97 0.00 35.36 5.03
777 790 1.957877 GATCCCACTAAGAGGACCTCG 59.042 57.143 15.97 4.63 35.36 4.63
807 820 3.118261 AGTCATCAAGCCCATATTCACGT 60.118 43.478 0.00 0.00 0.00 4.49
836 850 1.072015 CATCAAGCCCAGATCTCTCCC 59.928 57.143 0.00 0.00 0.00 4.30
837 851 2.045524 TCATCAAGCCCAGATCTCTCC 58.954 52.381 0.00 0.00 0.00 3.71
889 910 2.484264 GGCGAGCTTTTATTGCGGATAT 59.516 45.455 0.00 0.00 35.28 1.63
904 926 2.391389 CGAGGGTTTCAAGGCGAGC 61.391 63.158 0.00 0.00 0.00 5.03
931 953 1.312371 CCGCCAAAATGATCGGTGGT 61.312 55.000 7.76 0.00 44.08 4.16
1413 1448 2.337170 TGGTACACGTGCACCTCG 59.663 61.111 32.46 1.82 35.73 4.63
1685 1721 7.363268 GCCACTGAAAGATTCCTAAAATCACAT 60.363 37.037 1.07 0.00 37.43 3.21
1687 1723 6.325596 GCCACTGAAAGATTCCTAAAATCAC 58.674 40.000 1.07 0.00 37.43 3.06
1693 1731 2.569853 TCCGCCACTGAAAGATTCCTAA 59.430 45.455 0.00 0.00 37.43 2.69
1696 1734 1.373570 CTCCGCCACTGAAAGATTCC 58.626 55.000 0.00 0.00 37.43 3.01
1697 1735 0.729690 GCTCCGCCACTGAAAGATTC 59.270 55.000 0.00 0.00 37.43 2.52
1699 1737 0.326264 AAGCTCCGCCACTGAAAGAT 59.674 50.000 0.00 0.00 37.43 2.40
1700 1738 0.320771 GAAGCTCCGCCACTGAAAGA 60.321 55.000 0.00 0.00 37.43 2.52
1702 1740 0.036732 ATGAAGCTCCGCCACTGAAA 59.963 50.000 0.00 0.00 0.00 2.69
1704 1742 1.078918 CATGAAGCTCCGCCACTGA 60.079 57.895 0.00 0.00 0.00 3.41
1705 1743 2.110967 CCATGAAGCTCCGCCACTG 61.111 63.158 0.00 0.00 0.00 3.66
1706 1744 2.270205 CCATGAAGCTCCGCCACT 59.730 61.111 0.00 0.00 0.00 4.00
1707 1745 2.825836 CCCATGAAGCTCCGCCAC 60.826 66.667 0.00 0.00 0.00 5.01
1708 1746 4.113815 CCCCATGAAGCTCCGCCA 62.114 66.667 0.00 0.00 0.00 5.69
1711 1749 4.883354 GGCCCCCATGAAGCTCCG 62.883 72.222 0.00 0.00 0.00 4.63
1712 1750 3.301222 TTGGCCCCCATGAAGCTCC 62.301 63.158 0.00 0.00 31.53 4.70
1714 1752 2.037847 GTTGGCCCCCATGAAGCT 59.962 61.111 0.00 0.00 31.53 3.74
1715 1753 3.076916 GGTTGGCCCCCATGAAGC 61.077 66.667 0.00 0.00 31.53 3.86
1716 1754 1.683365 CAGGTTGGCCCCCATGAAG 60.683 63.158 10.93 0.00 31.53 3.02
1717 1755 2.444696 CAGGTTGGCCCCCATGAA 59.555 61.111 10.93 0.00 31.53 2.57
1718 1756 3.671410 CCAGGTTGGCCCCCATGA 61.671 66.667 10.93 0.00 31.53 3.07
1719 1757 4.783501 CCCAGGTTGGCCCCCATG 62.784 72.222 10.93 4.05 35.79 3.66
1745 1783 4.637663 TTTTTCTTGGGCTGGGGG 57.362 55.556 0.00 0.00 0.00 5.40
1763 1801 9.490379 CAGAAAAACTAATGAGTAGTAGGTGTT 57.510 33.333 0.00 0.00 42.55 3.32
1764 1802 8.867097 TCAGAAAAACTAATGAGTAGTAGGTGT 58.133 33.333 0.00 0.00 42.55 4.16
1765 1803 9.141400 GTCAGAAAAACTAATGAGTAGTAGGTG 57.859 37.037 0.00 0.00 42.55 4.00
1766 1804 8.867097 TGTCAGAAAAACTAATGAGTAGTAGGT 58.133 33.333 0.00 0.00 42.55 3.08
1767 1805 9.877178 ATGTCAGAAAAACTAATGAGTAGTAGG 57.123 33.333 0.00 0.00 42.55 3.18
1786 1824 9.109393 GGCTATTTTTACTGAACATATGTCAGA 57.891 33.333 27.55 15.94 35.62 3.27
1787 1825 9.113838 AGGCTATTTTTACTGAACATATGTCAG 57.886 33.333 22.85 22.85 37.50 3.51
1795 1833 9.733556 TGAGATTTAGGCTATTTTTACTGAACA 57.266 29.630 0.00 0.00 0.00 3.18
1805 1843 8.633561 GGCAAAACTATGAGATTTAGGCTATTT 58.366 33.333 0.00 0.00 0.00 1.40
1806 1844 7.231519 GGGCAAAACTATGAGATTTAGGCTATT 59.768 37.037 0.00 0.00 0.00 1.73
1807 1845 6.717084 GGGCAAAACTATGAGATTTAGGCTAT 59.283 38.462 0.00 0.00 0.00 2.97
1808 1846 6.062095 GGGCAAAACTATGAGATTTAGGCTA 58.938 40.000 0.00 0.00 0.00 3.93
1809 1847 4.889995 GGGCAAAACTATGAGATTTAGGCT 59.110 41.667 0.00 0.00 0.00 4.58
1810 1848 4.038042 GGGGCAAAACTATGAGATTTAGGC 59.962 45.833 0.00 0.00 0.00 3.93
1811 1849 5.449553 AGGGGCAAAACTATGAGATTTAGG 58.550 41.667 0.00 0.00 0.00 2.69
1812 1850 5.532779 GGAGGGGCAAAACTATGAGATTTAG 59.467 44.000 0.00 0.00 0.00 1.85
1813 1851 5.193728 AGGAGGGGCAAAACTATGAGATTTA 59.806 40.000 0.00 0.00 0.00 1.40
1814 1852 4.017130 AGGAGGGGCAAAACTATGAGATTT 60.017 41.667 0.00 0.00 0.00 2.17
1815 1853 3.529319 AGGAGGGGCAAAACTATGAGATT 59.471 43.478 0.00 0.00 0.00 2.40
1816 1854 3.126453 AGGAGGGGCAAAACTATGAGAT 58.874 45.455 0.00 0.00 0.00 2.75
1817 1855 2.562296 AGGAGGGGCAAAACTATGAGA 58.438 47.619 0.00 0.00 0.00 3.27
1818 1856 3.019564 CAAGGAGGGGCAAAACTATGAG 58.980 50.000 0.00 0.00 0.00 2.90
1819 1857 2.291540 CCAAGGAGGGGCAAAACTATGA 60.292 50.000 0.00 0.00 0.00 2.15
1820 1858 2.102578 CCAAGGAGGGGCAAAACTATG 58.897 52.381 0.00 0.00 0.00 2.23
1821 1859 2.532250 CCAAGGAGGGGCAAAACTAT 57.468 50.000 0.00 0.00 0.00 2.12
1823 1861 4.952482 CCAAGGAGGGGCAAAACT 57.048 55.556 0.00 0.00 0.00 2.66
1830 1868 2.042639 CAATGGGCCAAGGAGGGG 60.043 66.667 11.89 0.00 38.09 4.79
1831 1869 2.761213 GCAATGGGCCAAGGAGGG 60.761 66.667 11.89 0.00 38.09 4.30
1840 1878 2.284552 TTTGGAGGGGCAATGGGC 60.285 61.111 0.00 0.00 43.74 5.36
1841 1879 0.031817 ATCTTTGGAGGGGCAATGGG 60.032 55.000 0.00 0.00 0.00 4.00
1842 1880 1.870064 AATCTTTGGAGGGGCAATGG 58.130 50.000 0.00 0.00 0.00 3.16
1843 1881 3.255969 CAAATCTTTGGAGGGGCAATG 57.744 47.619 0.00 0.00 34.59 2.82
1854 1892 1.066645 GGAGCTTGGGCCAAATCTTTG 60.067 52.381 21.28 8.51 39.73 2.77
1855 1893 1.269958 GGAGCTTGGGCCAAATCTTT 58.730 50.000 21.28 3.94 39.73 2.52
1856 1894 0.967380 CGGAGCTTGGGCCAAATCTT 60.967 55.000 21.28 5.81 39.73 2.40
1857 1895 1.379044 CGGAGCTTGGGCCAAATCT 60.379 57.895 21.28 19.11 39.73 2.40
1858 1896 3.200522 CGGAGCTTGGGCCAAATC 58.799 61.111 21.28 19.61 39.73 2.17
1871 1909 1.089920 CAAAGATTCCAGTGGCGGAG 58.910 55.000 3.51 0.00 36.12 4.63
1872 1910 0.690192 TCAAAGATTCCAGTGGCGGA 59.310 50.000 3.51 0.00 0.00 5.54
1873 1911 1.533625 TTCAAAGATTCCAGTGGCGG 58.466 50.000 3.51 0.00 0.00 6.13
1874 1912 3.941483 ACTATTCAAAGATTCCAGTGGCG 59.059 43.478 3.51 0.00 0.00 5.69
1875 1913 7.934120 ACTATACTATTCAAAGATTCCAGTGGC 59.066 37.037 3.51 0.00 0.00 5.01
1908 1946 3.632604 GCTGCTACTACACTAGGATCACA 59.367 47.826 0.00 0.00 0.00 3.58
1924 1962 1.115467 GCTTCCAGTCCTAGCTGCTA 58.885 55.000 9.34 9.34 35.28 3.49
1925 1963 0.906756 TGCTTCCAGTCCTAGCTGCT 60.907 55.000 7.57 7.57 35.93 4.24
1926 1964 0.461693 CTGCTTCCAGTCCTAGCTGC 60.462 60.000 0.00 0.00 35.93 5.25
1927 1965 1.189752 TCTGCTTCCAGTCCTAGCTG 58.810 55.000 0.00 0.00 40.09 4.24
1928 1966 1.830477 CTTCTGCTTCCAGTCCTAGCT 59.170 52.381 0.00 0.00 40.09 3.32
1929 1967 1.552792 ACTTCTGCTTCCAGTCCTAGC 59.447 52.381 0.00 0.00 40.09 3.42
1930 1968 2.828520 TCACTTCTGCTTCCAGTCCTAG 59.171 50.000 0.00 0.00 40.09 3.02
1931 1969 2.889512 TCACTTCTGCTTCCAGTCCTA 58.110 47.619 0.00 0.00 40.09 2.94
1932 1970 1.722034 TCACTTCTGCTTCCAGTCCT 58.278 50.000 0.00 0.00 40.09 3.85
1933 1971 2.777832 ATCACTTCTGCTTCCAGTCC 57.222 50.000 0.00 0.00 40.09 3.85
1934 1972 4.997395 TGTTAATCACTTCTGCTTCCAGTC 59.003 41.667 0.00 0.00 40.09 3.51
1935 1973 4.757149 GTGTTAATCACTTCTGCTTCCAGT 59.243 41.667 0.00 0.00 43.13 4.00
1936 1974 5.288543 GTGTTAATCACTTCTGCTTCCAG 57.711 43.478 0.00 0.00 43.13 3.86
1979 2017 0.616395 TCCAGTGCTTCGGGTATCCA 60.616 55.000 0.00 0.00 33.18 3.41
1996 2034 4.002906 TGGTGTTGTTATGACTGAGTCC 57.997 45.455 10.52 0.00 0.00 3.85
2013 2053 2.536761 TCGTGGTAGGTTTCTTGGTG 57.463 50.000 0.00 0.00 0.00 4.17
2014 2054 3.782656 ATTCGTGGTAGGTTTCTTGGT 57.217 42.857 0.00 0.00 0.00 3.67
2031 2071 7.083875 TGGAAAACGAAGGACATCATAATTC 57.916 36.000 0.00 0.00 0.00 2.17
2039 2079 4.014406 GGGTAATGGAAAACGAAGGACAT 58.986 43.478 0.00 0.00 0.00 3.06
2076 2116 4.126437 TCTTTTCACATTCAGCGACTTCA 58.874 39.130 0.00 0.00 0.00 3.02
2079 2119 6.992063 ATTATCTTTTCACATTCAGCGACT 57.008 33.333 0.00 0.00 0.00 4.18
3553 3664 1.327690 TGTCCACCCTGTAGATCCGC 61.328 60.000 0.00 0.00 0.00 5.54
3554 3665 0.747255 CTGTCCACCCTGTAGATCCG 59.253 60.000 0.00 0.00 0.00 4.18
3555 3666 1.123928 CCTGTCCACCCTGTAGATCC 58.876 60.000 0.00 0.00 0.00 3.36
3556 3667 1.123928 CCCTGTCCACCCTGTAGATC 58.876 60.000 0.00 0.00 0.00 2.75
3557 3668 0.983378 GCCCTGTCCACCCTGTAGAT 60.983 60.000 0.00 0.00 0.00 1.98
3558 3669 1.612442 GCCCTGTCCACCCTGTAGA 60.612 63.158 0.00 0.00 0.00 2.59
3559 3670 2.990479 GCCCTGTCCACCCTGTAG 59.010 66.667 0.00 0.00 0.00 2.74
3560 3671 3.000819 CGCCCTGTCCACCCTGTA 61.001 66.667 0.00 0.00 0.00 2.74
3561 3672 4.954118 TCGCCCTGTCCACCCTGT 62.954 66.667 0.00 0.00 0.00 4.00
3562 3673 4.087892 CTCGCCCTGTCCACCCTG 62.088 72.222 0.00 0.00 0.00 4.45
3600 3711 2.814336 GGTGGGCTTTTTAGACAGACTG 59.186 50.000 0.00 0.00 0.00 3.51
3627 3768 0.978146 AGGACGAGTAGGCTGCCAAT 60.978 55.000 22.65 5.66 0.00 3.16
3631 3772 0.031449 GATCAGGACGAGTAGGCTGC 59.969 60.000 0.00 0.00 0.00 5.25
3646 3787 3.498834 GTGCGTGCATGCGGATCA 61.499 61.111 25.05 5.04 37.81 2.92
3679 3820 2.171448 AGGGAATCAGAGTTGGGATTCG 59.829 50.000 0.00 0.00 46.53 3.34
3682 3823 3.142579 AGAGGGAATCAGAGTTGGGAT 57.857 47.619 0.00 0.00 0.00 3.85
3719 3860 1.062845 GCAGGCGTCGAGTAGAGAC 59.937 63.158 0.00 0.00 35.41 3.36
3767 3908 3.118038 GGGGATAAAGCACACATCCACTA 60.118 47.826 8.37 0.00 38.90 2.74
3770 3911 1.638070 TGGGGATAAAGCACACATCCA 59.362 47.619 8.37 0.00 40.09 3.41
3774 3915 1.281867 CTCCTGGGGATAAAGCACACA 59.718 52.381 0.00 0.00 0.00 3.72
3776 3917 0.918983 CCTCCTGGGGATAAAGCACA 59.081 55.000 0.00 0.00 0.00 4.57
3778 3919 0.624500 AGCCTCCTGGGGATAAAGCA 60.625 55.000 0.00 0.00 35.12 3.91
3786 3927 2.846754 GCTCCTAGCCTCCTGGGG 60.847 72.222 0.00 0.00 39.98 4.96
3811 3952 3.170672 ACTGCTGGACACTGGGCA 61.171 61.111 0.00 0.00 0.00 5.36
3816 3957 1.227764 CTGCACACTGCTGGACACT 60.228 57.895 0.00 0.00 45.31 3.55
3823 3964 1.233285 GCTAGTTGCTGCACACTGCT 61.233 55.000 20.26 9.95 45.31 4.24
3836 3977 1.556911 CTGGATGGTGGACTGCTAGTT 59.443 52.381 0.00 0.00 0.00 2.24
3850 3991 3.200593 GCGTCAGGCTGCTGGATG 61.201 66.667 10.34 4.39 39.11 3.51
3851 3992 3.677284 CTGCGTCAGGCTGCTGGAT 62.677 63.158 10.34 0.00 44.05 3.41
3893 4034 5.545063 AAGAAATTTTTGAATGGGACGGT 57.455 34.783 0.00 0.00 0.00 4.83
3894 4035 7.816995 TCAATAAGAAATTTTTGAATGGGACGG 59.183 33.333 1.42 0.00 0.00 4.79
4113 4254 9.420118 TGGACTAATTGATTTACCAATAGCAAT 57.580 29.630 0.00 0.00 35.86 3.56
4114 4255 8.815565 TGGACTAATTGATTTACCAATAGCAA 57.184 30.769 0.00 0.00 35.86 3.91
4168 4309 4.148838 CAGGATGGTCCACCTTACAAAAA 58.851 43.478 9.57 0.00 39.61 1.94
4183 4324 6.264067 GGATCTAGGATTTTGAAACAGGATGG 59.736 42.308 0.00 0.00 43.62 3.51
4186 4327 5.428253 CGGATCTAGGATTTTGAAACAGGA 58.572 41.667 0.00 0.00 0.00 3.86
4429 4572 4.892934 TCACCACCTACTTGCTTCAAAAAT 59.107 37.500 0.00 0.00 0.00 1.82
4507 4674 2.421952 GGCTTGTGATTGGAGGCTGATA 60.422 50.000 0.00 0.00 33.61 2.15
4669 4837 4.473196 TCATACTTCTATGCTGGGGTTCAA 59.527 41.667 0.00 0.00 31.18 2.69
4777 4946 7.062605 GCCATGTTCACAGATGAATGTTTTTAG 59.937 37.037 0.00 0.00 46.43 1.85
4787 4956 1.073603 TGTGGCCATGTTCACAGATGA 59.926 47.619 9.72 0.00 38.75 2.92
4830 5001 7.510001 TCAAAATAATGTGGATCCAGGCATAAT 59.490 33.333 16.81 4.82 0.00 1.28
4854 5025 9.569122 AGAAATCATGATTGTGACATCATATCA 57.431 29.630 21.39 5.45 35.91 2.15
4899 5074 2.159014 TGGACAAGTAAGACAAGCACGT 60.159 45.455 0.00 0.00 0.00 4.49
4990 5165 8.092687 TCATGATTGTGAAGATCGTCATATCAT 58.907 33.333 27.16 27.16 39.82 2.45
4991 5166 7.436118 TCATGATTGTGAAGATCGTCATATCA 58.564 34.615 25.97 25.97 36.60 2.15
5000 5175 8.494347 GCTTACATACTCATGATTGTGAAGATC 58.506 37.037 15.24 0.00 35.96 2.75
5141 5316 4.155280 CACATCATGAACTTGCAGTCATCA 59.845 41.667 0.00 2.20 0.00 3.07
5268 5443 0.830648 GTACTGCAGCTATGTCCCCA 59.169 55.000 15.27 0.00 0.00 4.96
5488 5663 3.300667 CTTCGCCGCTGTGCAAGTC 62.301 63.158 0.00 0.00 0.00 3.01
5489 5664 3.349006 CTTCGCCGCTGTGCAAGT 61.349 61.111 0.00 0.00 0.00 3.16
5490 5665 4.748679 GCTTCGCCGCTGTGCAAG 62.749 66.667 0.00 0.00 0.00 4.01
5491 5666 3.874807 TAGCTTCGCCGCTGTGCAA 62.875 57.895 8.30 0.00 41.12 4.08
5492 5667 3.664025 ATAGCTTCGCCGCTGTGCA 62.664 57.895 8.30 0.00 41.12 4.57
5493 5668 2.892425 ATAGCTTCGCCGCTGTGC 60.892 61.111 8.30 0.00 41.12 4.57
5494 5669 3.009140 CATAGCTTCGCCGCTGTG 58.991 61.111 8.30 8.03 41.56 3.66
5495 5670 1.811266 CACATAGCTTCGCCGCTGT 60.811 57.895 8.30 0.00 41.12 4.40
5496 5671 1.361668 AACACATAGCTTCGCCGCTG 61.362 55.000 8.30 0.00 41.12 5.18
5497 5672 0.174845 TAACACATAGCTTCGCCGCT 59.825 50.000 0.00 3.82 43.83 5.52
5498 5673 0.577269 CTAACACATAGCTTCGCCGC 59.423 55.000 0.00 0.00 0.00 6.53
5499 5674 1.852895 GACTAACACATAGCTTCGCCG 59.147 52.381 0.00 0.00 34.78 6.46
5500 5675 2.860735 CAGACTAACACATAGCTTCGCC 59.139 50.000 0.00 0.00 34.78 5.54
5501 5676 3.304559 CACAGACTAACACATAGCTTCGC 59.695 47.826 0.00 0.00 34.78 4.70
5502 5677 3.859961 CCACAGACTAACACATAGCTTCG 59.140 47.826 0.00 0.00 34.78 3.79
5503 5678 4.081642 TCCCACAGACTAACACATAGCTTC 60.082 45.833 0.00 0.00 34.78 3.86
5504 5679 3.838317 TCCCACAGACTAACACATAGCTT 59.162 43.478 0.00 0.00 34.78 3.74
5505 5680 3.441101 TCCCACAGACTAACACATAGCT 58.559 45.455 0.00 0.00 34.78 3.32
5506 5681 3.887621 TCCCACAGACTAACACATAGC 57.112 47.619 0.00 0.00 34.78 2.97
5507 5682 5.127845 ACTGATCCCACAGACTAACACATAG 59.872 44.000 0.00 0.00 40.63 2.23
5508 5683 5.023452 ACTGATCCCACAGACTAACACATA 58.977 41.667 0.00 0.00 40.63 2.29
5509 5684 3.840666 ACTGATCCCACAGACTAACACAT 59.159 43.478 0.00 0.00 40.63 3.21
5510 5685 3.239449 ACTGATCCCACAGACTAACACA 58.761 45.455 0.00 0.00 40.63 3.72
5511 5686 3.963428 ACTGATCCCACAGACTAACAC 57.037 47.619 0.00 0.00 40.63 3.32
5512 5687 3.901222 TCAACTGATCCCACAGACTAACA 59.099 43.478 0.00 0.00 40.63 2.41
5513 5688 4.246458 GTCAACTGATCCCACAGACTAAC 58.754 47.826 0.00 0.00 40.63 2.34
5514 5689 3.260884 GGTCAACTGATCCCACAGACTAA 59.739 47.826 0.00 0.00 40.63 2.24
5515 5690 2.832129 GGTCAACTGATCCCACAGACTA 59.168 50.000 0.00 0.00 40.63 2.59
5516 5691 1.625818 GGTCAACTGATCCCACAGACT 59.374 52.381 0.00 0.00 40.63 3.24
5517 5692 1.339151 GGGTCAACTGATCCCACAGAC 60.339 57.143 0.00 0.00 39.44 3.51
5518 5693 0.984230 GGGTCAACTGATCCCACAGA 59.016 55.000 0.00 0.00 39.44 3.41
5519 5694 3.558674 GGGTCAACTGATCCCACAG 57.441 57.895 0.00 0.00 39.44 3.66
5524 5699 0.678048 GCTGTGGGGTCAACTGATCC 60.678 60.000 0.00 0.00 44.64 3.36
5525 5700 0.326264 AGCTGTGGGGTCAACTGATC 59.674 55.000 0.00 0.00 0.00 2.92
5526 5701 0.773644 AAGCTGTGGGGTCAACTGAT 59.226 50.000 0.00 0.00 0.00 2.90
5527 5702 0.550914 AAAGCTGTGGGGTCAACTGA 59.449 50.000 0.00 0.00 0.00 3.41
5528 5703 1.402787 AAAAGCTGTGGGGTCAACTG 58.597 50.000 0.00 0.00 0.00 3.16
5529 5704 2.159179 AAAAAGCTGTGGGGTCAACT 57.841 45.000 0.00 0.00 0.00 3.16
5530 5705 3.219281 TCTAAAAAGCTGTGGGGTCAAC 58.781 45.455 0.00 0.00 0.00 3.18
5531 5706 3.586470 TCTAAAAAGCTGTGGGGTCAA 57.414 42.857 0.00 0.00 0.00 3.18
5532 5707 3.586470 TTCTAAAAAGCTGTGGGGTCA 57.414 42.857 0.00 0.00 0.00 4.02
5533 5708 4.929819 TTTTCTAAAAAGCTGTGGGGTC 57.070 40.909 0.00 0.00 0.00 4.46
5534 5709 6.518369 GCTTATTTTCTAAAAAGCTGTGGGGT 60.518 38.462 0.00 0.00 32.01 4.95
5535 5710 5.869344 GCTTATTTTCTAAAAAGCTGTGGGG 59.131 40.000 0.00 0.00 32.01 4.96
5536 5711 5.869344 GGCTTATTTTCTAAAAAGCTGTGGG 59.131 40.000 10.21 0.00 34.06 4.61
5537 5712 6.691508 AGGCTTATTTTCTAAAAAGCTGTGG 58.308 36.000 10.21 0.00 34.06 4.17
5538 5713 9.691362 TTTAGGCTTATTTTCTAAAAAGCTGTG 57.309 29.630 10.21 0.00 34.06 3.66
5548 5723 9.344772 TGAACAGTGTTTTAGGCTTATTTTCTA 57.655 29.630 10.45 0.00 0.00 2.10
5549 5724 8.232913 TGAACAGTGTTTTAGGCTTATTTTCT 57.767 30.769 10.45 0.00 0.00 2.52
5550 5725 8.135529 ACTGAACAGTGTTTTAGGCTTATTTTC 58.864 33.333 10.45 0.00 40.75 2.29
5551 5726 8.007405 ACTGAACAGTGTTTTAGGCTTATTTT 57.993 30.769 10.45 0.00 40.75 1.82
5552 5727 7.582667 ACTGAACAGTGTTTTAGGCTTATTT 57.417 32.000 10.45 0.00 40.75 1.40
5553 5728 7.937394 AGTACTGAACAGTGTTTTAGGCTTATT 59.063 33.333 10.45 0.00 42.52 1.40
5554 5729 7.387948 CAGTACTGAACAGTGTTTTAGGCTTAT 59.612 37.037 18.45 0.00 42.52 1.73
5555 5730 6.704493 CAGTACTGAACAGTGTTTTAGGCTTA 59.296 38.462 18.45 0.00 42.52 3.09
5556 5731 5.527582 CAGTACTGAACAGTGTTTTAGGCTT 59.472 40.000 18.45 0.06 42.52 4.35
5557 5732 5.057149 CAGTACTGAACAGTGTTTTAGGCT 58.943 41.667 18.45 10.97 42.52 4.58
5558 5733 4.814771 ACAGTACTGAACAGTGTTTTAGGC 59.185 41.667 29.30 9.19 42.52 3.93
5559 5734 6.537301 TGAACAGTACTGAACAGTGTTTTAGG 59.463 38.462 29.30 3.79 42.52 2.69
5560 5735 7.534085 TGAACAGTACTGAACAGTGTTTTAG 57.466 36.000 29.30 13.68 42.52 1.85
5561 5736 9.037737 GTATGAACAGTACTGAACAGTGTTTTA 57.962 33.333 29.30 12.37 42.52 1.52
5562 5737 7.769044 AGTATGAACAGTACTGAACAGTGTTTT 59.231 33.333 29.30 9.47 42.52 2.43
5563 5738 7.272978 AGTATGAACAGTACTGAACAGTGTTT 58.727 34.615 29.30 10.20 42.52 2.83
5564 5739 6.817184 AGTATGAACAGTACTGAACAGTGTT 58.183 36.000 29.30 8.61 42.52 3.32
5565 5740 6.406692 AGTATGAACAGTACTGAACAGTGT 57.593 37.500 29.30 14.39 42.52 3.55
5605 5780 4.746466 TCTGTGGGGTCAATGGTATTTTT 58.254 39.130 0.00 0.00 0.00 1.94
5606 5781 4.396357 TCTGTGGGGTCAATGGTATTTT 57.604 40.909 0.00 0.00 0.00 1.82
5607 5782 4.396357 TTCTGTGGGGTCAATGGTATTT 57.604 40.909 0.00 0.00 0.00 1.40
5608 5783 4.086457 GTTTCTGTGGGGTCAATGGTATT 58.914 43.478 0.00 0.00 0.00 1.89
5609 5784 3.333680 AGTTTCTGTGGGGTCAATGGTAT 59.666 43.478 0.00 0.00 0.00 2.73
5610 5785 2.714250 AGTTTCTGTGGGGTCAATGGTA 59.286 45.455 0.00 0.00 0.00 3.25
5611 5786 1.499007 AGTTTCTGTGGGGTCAATGGT 59.501 47.619 0.00 0.00 0.00 3.55
5612 5787 2.292828 AGTTTCTGTGGGGTCAATGG 57.707 50.000 0.00 0.00 0.00 3.16
5613 5788 4.218417 CCTAAAGTTTCTGTGGGGTCAATG 59.782 45.833 0.00 0.00 0.00 2.82
5614 5789 4.407365 CCTAAAGTTTCTGTGGGGTCAAT 58.593 43.478 0.00 0.00 0.00 2.57
5615 5790 3.827722 CCTAAAGTTTCTGTGGGGTCAA 58.172 45.455 0.00 0.00 0.00 3.18
5616 5791 2.488347 GCCTAAAGTTTCTGTGGGGTCA 60.488 50.000 0.00 0.00 0.00 4.02
5617 5792 2.160205 GCCTAAAGTTTCTGTGGGGTC 58.840 52.381 0.00 0.00 0.00 4.46
5618 5793 1.780919 AGCCTAAAGTTTCTGTGGGGT 59.219 47.619 0.00 0.00 0.00 4.95
5619 5794 2.162681 CAGCCTAAAGTTTCTGTGGGG 58.837 52.381 0.00 0.00 0.00 4.96
5620 5795 2.162681 CCAGCCTAAAGTTTCTGTGGG 58.837 52.381 0.00 0.00 0.00 4.61
5621 5796 1.541588 GCCAGCCTAAAGTTTCTGTGG 59.458 52.381 0.00 0.00 0.00 4.17
5622 5797 1.541588 GGCCAGCCTAAAGTTTCTGTG 59.458 52.381 0.00 0.00 0.00 3.66
5623 5798 1.425448 AGGCCAGCCTAAAGTTTCTGT 59.575 47.619 10.11 0.00 46.14 3.41
5624 5799 2.206576 AGGCCAGCCTAAAGTTTCTG 57.793 50.000 10.11 0.00 46.14 3.02
5640 5815 3.880846 CAATTCCAGCGGCGAGGC 61.881 66.667 12.98 0.00 0.00 4.70
5641 5816 3.880846 GCAATTCCAGCGGCGAGG 61.881 66.667 12.98 12.34 0.00 4.63
5642 5817 1.159713 TATGCAATTCCAGCGGCGAG 61.160 55.000 12.98 0.93 33.85 5.03
5643 5818 0.534877 ATATGCAATTCCAGCGGCGA 60.535 50.000 12.98 0.00 33.85 5.54
5644 5819 0.386352 CATATGCAATTCCAGCGGCG 60.386 55.000 0.51 0.51 33.85 6.46
5645 5820 0.953727 TCATATGCAATTCCAGCGGC 59.046 50.000 0.00 0.00 33.85 6.53
5646 5821 2.358582 TGTTCATATGCAATTCCAGCGG 59.641 45.455 0.00 0.00 33.85 5.52
5647 5822 3.696281 TGTTCATATGCAATTCCAGCG 57.304 42.857 0.00 0.00 33.85 5.18
5648 5823 5.170021 TGTTTGTTCATATGCAATTCCAGC 58.830 37.500 0.00 0.00 0.00 4.85
5649 5824 5.808540 CCTGTTTGTTCATATGCAATTCCAG 59.191 40.000 0.00 4.91 0.00 3.86
5650 5825 5.479724 TCCTGTTTGTTCATATGCAATTCCA 59.520 36.000 0.00 0.00 0.00 3.53
5654 5829 6.343716 TGTTCCTGTTTGTTCATATGCAAT 57.656 33.333 0.00 0.00 0.00 3.56
5682 5857 6.819397 AACTTCCTTTTAATGAGCACCTAC 57.181 37.500 0.00 0.00 0.00 3.18
5914 6094 5.179929 CAGTCACACAAGCAAACTGATGATA 59.820 40.000 0.00 0.00 39.72 2.15
5999 6179 6.376864 CCACATATCACCAAGGTTTTGTCATA 59.623 38.462 0.00 0.00 32.21 2.15
6009 6189 2.569059 CAGAGCCACATATCACCAAGG 58.431 52.381 0.00 0.00 0.00 3.61
6016 6196 1.878088 CACCATGCAGAGCCACATATC 59.122 52.381 0.00 0.00 0.00 1.63
6054 6234 5.556915 ACAAACTGTAGGTGCTAGCATAAA 58.443 37.500 22.51 4.27 0.00 1.40
6091 6271 8.997323 CATGAGAATACTGAAATAAGGGACATC 58.003 37.037 0.00 0.00 0.00 3.06
6096 6276 8.511604 AACACATGAGAATACTGAAATAAGGG 57.488 34.615 0.00 0.00 0.00 3.95
6148 6328 7.792364 TGAAGGATAGAGAGTTAACCTGAAA 57.208 36.000 0.88 0.00 0.00 2.69
6149 6329 7.792364 TTGAAGGATAGAGAGTTAACCTGAA 57.208 36.000 0.88 0.00 0.00 3.02
6398 6593 5.973651 ACACAATAACATCAGATGCGTAG 57.026 39.130 10.59 0.14 0.00 3.51
6399 6594 5.447144 GCAACACAATAACATCAGATGCGTA 60.447 40.000 10.59 3.75 0.00 4.42
6474 6670 3.961408 GGGAAGCTAATACAGTCTCCAGA 59.039 47.826 0.00 0.00 0.00 3.86
6475 6671 3.706594 TGGGAAGCTAATACAGTCTCCAG 59.293 47.826 0.00 0.00 0.00 3.86
6492 6688 1.614903 CTTTTGTCTGCAGCATGGGAA 59.385 47.619 9.47 0.00 35.86 3.97
6542 6738 7.577303 AGAATATGGGAGCAGATTTGACTAAA 58.423 34.615 0.00 0.00 0.00 1.85
6586 6784 1.632422 CGGCACCAAAAATGAGATGC 58.368 50.000 0.00 0.00 0.00 3.91
6587 6785 1.632422 GCGGCACCAAAAATGAGATG 58.368 50.000 0.00 0.00 0.00 2.90
6588 6786 0.532115 GGCGGCACCAAAAATGAGAT 59.468 50.000 3.07 0.00 38.86 2.75
6589 6787 1.963679 GGCGGCACCAAAAATGAGA 59.036 52.632 3.07 0.00 38.86 3.27
6590 6788 4.576993 GGCGGCACCAAAAATGAG 57.423 55.556 3.07 0.00 38.86 2.90
6600 6798 0.596082 AAATAACAGTGTGGCGGCAC 59.404 50.000 33.07 33.07 39.51 5.01
6604 6802 2.991190 ACGAGTAAATAACAGTGTGGCG 59.009 45.455 0.00 0.00 0.00 5.69
6606 6804 6.183360 GGATTCACGAGTAAATAACAGTGTGG 60.183 42.308 0.00 0.00 38.96 4.17
6636 6834 6.642131 CACATCAGTATGTTTGTTTCCCTTTG 59.358 38.462 0.00 0.00 44.07 2.77
6638 6836 6.068010 TCACATCAGTATGTTTGTTTCCCTT 58.932 36.000 0.00 0.00 44.07 3.95
6640 6838 5.619981 GCTCACATCAGTATGTTTGTTTCCC 60.620 44.000 0.00 0.00 44.07 3.97
6641 6839 5.182001 AGCTCACATCAGTATGTTTGTTTCC 59.818 40.000 0.00 0.00 44.07 3.13
6644 6842 5.308014 TCAGCTCACATCAGTATGTTTGTT 58.692 37.500 0.00 0.00 44.07 2.83
6646 6844 5.173664 TCTCAGCTCACATCAGTATGTTTG 58.826 41.667 0.00 0.00 44.07 2.93
6650 6848 5.462729 GTCAATCTCAGCTCACATCAGTATG 59.537 44.000 0.00 0.00 39.17 2.39
6652 6850 4.142071 GGTCAATCTCAGCTCACATCAGTA 60.142 45.833 0.00 0.00 0.00 2.74
6654 6852 3.196463 GGTCAATCTCAGCTCACATCAG 58.804 50.000 0.00 0.00 0.00 2.90
6655 6853 2.093288 GGGTCAATCTCAGCTCACATCA 60.093 50.000 0.00 0.00 0.00 3.07
6657 6855 1.911357 TGGGTCAATCTCAGCTCACAT 59.089 47.619 0.00 0.00 0.00 3.21
6659 6857 2.479566 TTGGGTCAATCTCAGCTCAC 57.520 50.000 0.00 0.00 0.00 3.51
6664 6862 6.770746 ATTCATCTTTTGGGTCAATCTCAG 57.229 37.500 0.00 0.00 0.00 3.35
6665 6863 6.572898 GCAATTCATCTTTTGGGTCAATCTCA 60.573 38.462 0.00 0.00 0.00 3.27
6666 6864 5.809051 GCAATTCATCTTTTGGGTCAATCTC 59.191 40.000 0.00 0.00 0.00 2.75
6667 6865 5.246656 TGCAATTCATCTTTTGGGTCAATCT 59.753 36.000 0.00 0.00 0.00 2.40
6668 6866 5.481105 TGCAATTCATCTTTTGGGTCAATC 58.519 37.500 0.00 0.00 0.00 2.67
6669 6867 5.486735 TGCAATTCATCTTTTGGGTCAAT 57.513 34.783 0.00 0.00 0.00 2.57
6670 6868 4.952071 TGCAATTCATCTTTTGGGTCAA 57.048 36.364 0.00 0.00 0.00 3.18
6672 6870 6.205270 ACAAAATGCAATTCATCTTTTGGGTC 59.795 34.615 18.53 0.00 38.24 4.46
6674 6872 6.563222 ACAAAATGCAATTCATCTTTTGGG 57.437 33.333 18.53 1.59 38.24 4.12
6675 6873 8.016801 GGTTACAAAATGCAATTCATCTTTTGG 58.983 33.333 18.53 2.20 38.24 3.28
6676 6874 8.776470 AGGTTACAAAATGCAATTCATCTTTTG 58.224 29.630 14.68 14.68 39.11 2.44
6677 6875 8.907222 AGGTTACAAAATGCAATTCATCTTTT 57.093 26.923 0.00 0.00 33.67 2.27
6678 6876 8.149647 TGAGGTTACAAAATGCAATTCATCTTT 58.850 29.630 0.00 0.00 33.67 2.52
6679 6877 7.669427 TGAGGTTACAAAATGCAATTCATCTT 58.331 30.769 0.00 0.00 33.67 2.40
6681 6879 7.092716 ACTGAGGTTACAAAATGCAATTCATC 58.907 34.615 0.00 0.00 33.67 2.92
6682 6880 6.996509 ACTGAGGTTACAAAATGCAATTCAT 58.003 32.000 0.00 0.00 33.67 2.57
6683 6881 6.403866 ACTGAGGTTACAAAATGCAATTCA 57.596 33.333 0.00 0.00 33.67 2.57
6684 6882 8.810652 TTTACTGAGGTTACAAAATGCAATTC 57.189 30.769 0.00 0.00 33.67 2.17
6699 6946 7.334844 GCCTTAGCAATTTATTTACTGAGGT 57.665 36.000 11.56 0.00 36.70 3.85
6721 6968 0.534877 TGACCGTGGATGCATATGCC 60.535 55.000 24.54 10.19 41.18 4.40
6722 6969 0.588252 GTGACCGTGGATGCATATGC 59.412 55.000 21.09 21.09 42.50 3.14
6726 6973 2.042464 AGATAGTGACCGTGGATGCAT 58.958 47.619 0.00 0.00 0.00 3.96
6727 6974 1.136891 CAGATAGTGACCGTGGATGCA 59.863 52.381 0.00 0.00 0.00 3.96
6733 6980 5.466819 TCTTTTGTACAGATAGTGACCGTG 58.533 41.667 0.00 0.00 0.00 4.94
6748 6995 5.197451 ACAACCAGGTGTTCATCTTTTGTA 58.803 37.500 0.00 0.00 34.00 2.41
6773 7020 1.517242 CTCTCAAAGGCAGTCCACAC 58.483 55.000 0.00 0.00 33.74 3.82
6796 7043 5.767269 AGATAGCATATCTGTCAAGTCACG 58.233 41.667 0.00 0.00 35.61 4.35
6823 7073 3.598019 AAATTCAGCCACAAATCGCAT 57.402 38.095 0.00 0.00 0.00 4.73
6862 7116 2.279784 CTCGCCGATCCTGAAGGC 60.280 66.667 6.87 6.87 46.88 4.35
6921 7175 3.419759 CCGCCGTGGACGAAAAGG 61.420 66.667 0.00 0.00 42.00 3.11
7047 7301 1.801913 GCTGGTGTCGTCGCTGTAG 60.802 63.158 0.00 0.00 0.00 2.74
7061 7315 1.945662 GCGTTGTTGCTGTTGCTGG 60.946 57.895 0.00 0.00 40.48 4.85
7076 7336 2.915659 TGGACAGGAACGAGGCGT 60.916 61.111 0.00 0.00 43.97 5.68
7085 7345 2.094182 GCGTCTTCTTATGTGGACAGGA 60.094 50.000 0.00 0.00 0.00 3.86
7108 7368 1.152546 GGGAAGCAGTTGGGTTGGT 60.153 57.895 0.00 0.00 37.33 3.67
7120 7380 1.412710 TCGTCCACATATCAGGGAAGC 59.587 52.381 0.00 0.00 31.39 3.86
7131 7391 0.181114 CATGTCCCCATCGTCCACAT 59.819 55.000 0.00 0.00 0.00 3.21
7165 7436 3.545481 GCGACGCATCCACTCACG 61.545 66.667 16.42 0.00 0.00 4.35
7236 7507 0.600255 CTAGGGGCCAAACGATAGCG 60.600 60.000 4.39 0.00 44.79 4.26
7250 7521 2.166829 CCATGTCTCGAGGATCTAGGG 58.833 57.143 13.56 2.38 0.00 3.53
7261 7532 1.611006 ACTCGATCCATCCATGTCTCG 59.389 52.381 0.00 2.98 33.69 4.04
7323 7594 3.329520 ACCAGGTAACATAACAGGCTTCA 59.670 43.478 0.00 0.00 41.41 3.02
7334 7605 0.107831 ACACACGCACCAGGTAACAT 59.892 50.000 0.00 0.00 41.41 2.71
7365 7645 0.884514 GGCCTGAAAACTTCTGCCTC 59.115 55.000 0.00 0.00 41.77 4.70
7441 7757 3.077359 ACCACATAAGCAGAGTTTCAGC 58.923 45.455 0.00 0.00 0.00 4.26
7448 7764 1.002366 GTGCGACCACATAAGCAGAG 58.998 55.000 0.00 0.00 41.67 3.35
7472 7790 1.527311 GAAAGTGAGTGACAAGGCGTC 59.473 52.381 0.00 0.00 45.61 5.19
7484 7802 1.577328 ATTGCGCCGTGGAAAGTGAG 61.577 55.000 4.18 0.00 0.00 3.51
7485 7803 1.573829 GATTGCGCCGTGGAAAGTGA 61.574 55.000 4.18 0.00 0.00 3.41
7643 7976 1.475280 CTTGCATTGCATACTGGCAGT 59.525 47.619 25.34 25.34 45.88 4.40
7644 7977 1.801395 GCTTGCATTGCATACTGGCAG 60.801 52.381 14.16 14.16 45.88 4.85
7645 7978 0.173935 GCTTGCATTGCATACTGGCA 59.826 50.000 12.95 0.00 43.19 4.92
7646 7979 0.458669 AGCTTGCATTGCATACTGGC 59.541 50.000 12.95 11.51 38.76 4.85
7648 7981 1.399440 ACGAGCTTGCATTGCATACTG 59.601 47.619 12.95 9.78 38.76 2.74
7649 7982 1.742761 ACGAGCTTGCATTGCATACT 58.257 45.000 12.95 12.56 38.76 2.12
7650 7983 2.549633 AACGAGCTTGCATTGCATAC 57.450 45.000 12.95 7.70 38.76 2.39
7651 7984 2.159393 GGAAACGAGCTTGCATTGCATA 60.159 45.455 12.95 2.96 38.76 3.14
7652 7985 1.403249 GGAAACGAGCTTGCATTGCAT 60.403 47.619 12.95 0.00 38.76 3.96
7653 7986 0.039256 GGAAACGAGCTTGCATTGCA 60.039 50.000 7.38 7.38 36.47 4.08
7654 7987 2.729378 GGAAACGAGCTTGCATTGC 58.271 52.632 0.00 0.46 0.00 3.56
7765 8099 2.728383 CAAAGACGTCGTCGCCGT 60.728 61.111 19.11 0.00 42.06 5.68
7766 8100 2.427905 TCAAAGACGTCGTCGCCG 60.428 61.111 19.11 11.40 41.18 6.46
7767 8101 1.335697 GAGTCAAAGACGTCGTCGCC 61.336 60.000 19.11 7.12 41.18 5.54
7770 8104 2.911723 CAGATGAGTCAAAGACGTCGTC 59.088 50.000 17.70 17.70 37.67 4.20
7771 8105 2.351835 CCAGATGAGTCAAAGACGTCGT 60.352 50.000 10.46 3.44 37.67 4.34
7772 8106 2.254459 CCAGATGAGTCAAAGACGTCG 58.746 52.381 10.46 0.00 37.67 5.12
7773 8107 1.996191 GCCAGATGAGTCAAAGACGTC 59.004 52.381 7.70 7.70 37.67 4.34
7774 8108 1.344438 TGCCAGATGAGTCAAAGACGT 59.656 47.619 0.00 0.00 37.67 4.34
7775 8109 1.998315 CTGCCAGATGAGTCAAAGACG 59.002 52.381 0.00 0.00 37.67 4.18
7777 8111 1.339438 GGCTGCCAGATGAGTCAAAGA 60.339 52.381 15.17 0.00 0.00 2.52
7778 8112 1.093159 GGCTGCCAGATGAGTCAAAG 58.907 55.000 15.17 0.00 0.00 2.77
7779 8113 0.322816 GGGCTGCCAGATGAGTCAAA 60.323 55.000 22.05 0.00 0.00 2.69
7780 8114 1.203441 AGGGCTGCCAGATGAGTCAA 61.203 55.000 22.05 0.00 0.00 3.18
7781 8115 1.614525 AGGGCTGCCAGATGAGTCA 60.615 57.895 22.05 0.00 0.00 3.41
7782 8116 1.153208 CAGGGCTGCCAGATGAGTC 60.153 63.158 22.05 0.00 0.00 3.36
7783 8117 2.677289 CCAGGGCTGCCAGATGAGT 61.677 63.158 22.05 0.00 0.00 3.41
7795 8129 2.341176 CAAAGTGCAAGCCAGGGC 59.659 61.111 0.97 0.97 42.33 5.19
7796 8130 2.341176 GCAAAGTGCAAGCCAGGG 59.659 61.111 0.00 0.00 44.26 4.45
7832 8166 3.593551 AATTTGCGCACGCGTCTGG 62.594 57.895 11.12 1.89 45.51 3.86
7837 8171 0.043481 AAAAACAATTTGCGCACGCG 60.043 45.000 11.12 3.53 45.51 6.01
7855 8189 6.170506 CCAAGCACAAGATACTGTAGGTAAA 58.829 40.000 0.00 0.00 33.74 2.01
7858 8192 3.583086 ACCAAGCACAAGATACTGTAGGT 59.417 43.478 0.00 0.00 0.00 3.08
7864 8378 4.081752 CAGAGAGACCAAGCACAAGATACT 60.082 45.833 0.00 0.00 0.00 2.12
7875 8389 1.447489 CCAGCGCAGAGAGACCAAG 60.447 63.158 11.47 0.00 0.00 3.61
7883 8397 1.593750 GGCATACTCCAGCGCAGAG 60.594 63.158 21.78 21.78 37.39 3.35
7889 8403 2.590007 CGGCAGGCATACTCCAGC 60.590 66.667 0.00 0.00 37.84 4.85
7892 8406 4.256180 CCCCGGCAGGCATACTCC 62.256 72.222 0.00 0.00 35.76 3.85
7977 8491 3.860605 TGGATGCCCATCGGACGG 61.861 66.667 2.47 0.00 37.58 4.79
7979 8493 2.203209 GGTGGATGCCCATCGGAC 60.203 66.667 2.47 2.31 45.68 4.79
8041 8555 0.674534 AGCCGACTCTTTTCTCGTGT 59.325 50.000 0.00 0.00 0.00 4.49
8052 8566 3.151022 CAGGGAGGGAGCCGACTC 61.151 72.222 0.00 0.00 42.66 3.36
8073 8587 1.019278 CCTGTACGTCCACATGGCAC 61.019 60.000 0.00 0.00 34.44 5.01
8074 8588 1.295101 CCTGTACGTCCACATGGCA 59.705 57.895 0.00 0.00 34.44 4.92
8075 8589 2.106683 GCCTGTACGTCCACATGGC 61.107 63.158 12.86 12.86 36.36 4.40
8076 8590 1.809619 CGCCTGTACGTCCACATGG 60.810 63.158 0.00 0.00 0.00 3.66
8077 8591 2.452813 GCGCCTGTACGTCCACATG 61.453 63.158 0.00 0.00 34.88 3.21
8078 8592 2.125673 GCGCCTGTACGTCCACAT 60.126 61.111 0.00 0.00 34.88 3.21
8079 8593 3.567478 CTGCGCCTGTACGTCCACA 62.567 63.158 4.18 0.00 34.88 4.17
8080 8594 2.809601 CTGCGCCTGTACGTCCAC 60.810 66.667 4.18 0.00 34.88 4.02
8081 8595 4.063967 CCTGCGCCTGTACGTCCA 62.064 66.667 4.18 0.00 34.88 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.