Multiple sequence alignment - TraesCS5A01G331500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G331500 chr5A 100.000 4603 0 0 1 4603 540373172 540368570 0.000000e+00 8501
1 TraesCS5A01G331500 chr5B 90.643 2875 169 38 1163 3976 516043683 516040848 0.000000e+00 3727
2 TraesCS5A01G331500 chr5B 90.143 558 17 11 599 1124 516044735 516044184 0.000000e+00 691
3 TraesCS5A01G331500 chr5B 89.331 553 29 12 4070 4603 516040591 516040050 0.000000e+00 667
4 TraesCS5A01G331500 chr5B 94.301 193 8 2 1922 2112 658909649 658909840 4.500000e-75 292
5 TraesCS5A01G331500 chr5B 87.234 141 12 4 417 555 516044875 516044739 6.170000e-34 156
6 TraesCS5A01G331500 chr5D 92.052 2680 130 23 466 3097 426171328 426168684 0.000000e+00 3692
7 TraesCS5A01G331500 chr5D 89.689 805 47 13 3229 4018 426168596 426167813 0.000000e+00 994
8 TraesCS5A01G331500 chr5D 87.849 502 28 12 4070 4547 426167581 426167089 4.020000e-155 558
9 TraesCS5A01G331500 chr6D 93.059 461 20 9 1660 2112 133888397 133887941 0.000000e+00 664
10 TraesCS5A01G331500 chr6D 90.426 376 25 6 1744 2112 133661280 133660909 6.920000e-133 484
11 TraesCS5A01G331500 chr3D 89.167 480 23 5 1660 2112 30772615 30773092 5.170000e-159 571
12 TraesCS5A01G331500 chr4B 88.935 479 24 7 1660 2111 604275759 604276235 8.650000e-157 564
13 TraesCS5A01G331500 chr7B 87.164 483 30 9 1660 2112 452911414 452911894 1.900000e-143 520
14 TraesCS5A01G331500 chr7A 94.271 192 8 2 1923 2112 435337052 435337242 1.620000e-74 291
15 TraesCS5A01G331500 chr7A 85.864 191 18 6 218 406 670580645 670580462 1.310000e-45 195
16 TraesCS5A01G331500 chr7A 85.864 191 18 6 218 406 670734610 670734427 1.310000e-45 195
17 TraesCS5A01G331500 chr6B 93.782 193 9 2 1922 2112 636719804 636719613 2.100000e-73 287
18 TraesCS5A01G331500 chr6B 95.522 67 3 0 1661 1727 715035056 715035122 1.750000e-19 108
19 TraesCS5A01G331500 chr1D 87.831 189 20 2 217 403 191375444 191375257 7.750000e-53 219
20 TraesCS5A01G331500 chr1D 84.974 193 22 5 223 408 471132644 471132836 6.080000e-44 189
21 TraesCS5A01G331500 chr2A 87.432 183 20 3 224 403 514229340 514229522 1.680000e-49 207
22 TraesCS5A01G331500 chr1A 85.930 199 21 6 212 406 516740824 516740629 6.040000e-49 206
23 TraesCS5A01G331500 chr3B 84.375 192 25 3 216 403 39472734 39472544 2.830000e-42 183
24 TraesCS5A01G331500 chr3B 83.420 193 19 6 218 403 75363023 75362837 2.850000e-37 167
25 TraesCS5A01G331500 chr1B 89.552 134 8 2 1791 1919 404338023 404338155 1.020000e-36 165
26 TraesCS5A01G331500 chr1B 89.552 134 8 2 1791 1919 538798003 538797871 1.020000e-36 165
27 TraesCS5A01G331500 chr3A 83.425 181 24 3 230 404 706116786 706116606 3.680000e-36 163
28 TraesCS5A01G331500 chr3A 94.118 68 4 0 1660 1727 90106873 90106806 2.270000e-18 104
29 TraesCS5A01G331500 chr2B 92.135 89 6 1 1658 1745 625470261 625470173 1.740000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G331500 chr5A 540368570 540373172 4602 True 8501.00 8501 100.000000 1 4603 1 chr5A.!!$R1 4602
1 TraesCS5A01G331500 chr5B 516040050 516044875 4825 True 1310.25 3727 89.337750 417 4603 4 chr5B.!!$R1 4186
2 TraesCS5A01G331500 chr5D 426167089 426171328 4239 True 1748.00 3692 89.863333 466 4547 3 chr5D.!!$R1 4081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 419 0.033699 ACTCGTACCCTACCCCTGAC 60.034 60.000 0.00 0.00 0.00 3.51 F
422 423 0.033699 GTACCCTACCCCTGACTCGT 60.034 60.000 0.00 0.00 0.00 4.18 F
1153 1186 0.035439 GGCGGGGTTTCAGAATCTGA 60.035 55.000 9.18 9.18 38.87 3.27 F
1563 2071 0.177836 TAGCGCTGTATGGTGCATGT 59.822 50.000 22.90 0.00 44.17 3.21 F
2294 2826 2.617532 CCTTCTCTGCTCCAAGGAAAGG 60.618 54.545 1.71 1.71 39.36 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1247 1742 0.595567 CCACGGACGTTTCGACTGAA 60.596 55.000 16.94 0.00 32.88 3.02 R
1248 1743 1.008194 CCACGGACGTTTCGACTGA 60.008 57.895 16.94 0.00 32.88 3.41 R
2235 2767 1.083489 TTGCCTGTAAATCGCCGAAG 58.917 50.000 0.00 0.00 0.00 3.79 R
2823 3368 1.753073 AGCAACAAAGCCCTATGATGC 59.247 47.619 0.46 0.46 43.28 3.91 R
4040 4687 0.033920 CCTTTCCCAAAGCAAGTGCC 59.966 55.000 0.00 0.00 43.38 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.456806 GTGTTCGCACCTTCACCT 57.543 55.556 0.00 0.00 42.08 4.00
26 27 3.599412 GTGTTCGCACCTTCACCTA 57.401 52.632 0.00 0.00 42.08 3.08
27 28 1.873698 GTGTTCGCACCTTCACCTAA 58.126 50.000 0.00 0.00 42.08 2.69
28 29 2.215196 GTGTTCGCACCTTCACCTAAA 58.785 47.619 0.00 0.00 42.08 1.85
29 30 2.614983 GTGTTCGCACCTTCACCTAAAA 59.385 45.455 0.00 0.00 42.08 1.52
30 31 3.065648 GTGTTCGCACCTTCACCTAAAAA 59.934 43.478 0.00 0.00 42.08 1.94
54 55 6.626199 AACAAAAACAAAAACTAGTGCTCG 57.374 33.333 0.00 0.00 0.00 5.03
55 56 4.561213 ACAAAAACAAAAACTAGTGCTCGC 59.439 37.500 0.00 0.00 0.00 5.03
56 57 4.632538 AAAACAAAAACTAGTGCTCGCT 57.367 36.364 0.00 0.00 0.00 4.93
57 58 3.879932 AACAAAAACTAGTGCTCGCTC 57.120 42.857 0.00 0.00 0.00 5.03
58 59 2.143925 ACAAAAACTAGTGCTCGCTCC 58.856 47.619 0.00 0.00 0.00 4.70
59 60 1.464997 CAAAAACTAGTGCTCGCTCCC 59.535 52.381 0.00 0.00 0.00 4.30
60 61 0.036294 AAAACTAGTGCTCGCTCCCC 60.036 55.000 0.00 0.00 0.00 4.81
61 62 2.227089 AAACTAGTGCTCGCTCCCCG 62.227 60.000 0.00 0.00 38.61 5.73
62 63 3.141488 CTAGTGCTCGCTCCCCGT 61.141 66.667 0.00 0.00 38.35 5.28
63 64 3.417275 CTAGTGCTCGCTCCCCGTG 62.417 68.421 0.00 0.00 38.35 4.94
64 65 3.931190 TAGTGCTCGCTCCCCGTGA 62.931 63.158 0.00 0.00 38.35 4.35
67 68 3.138798 GCTCGCTCCCCGTGACTA 61.139 66.667 0.00 0.00 38.35 2.59
68 69 3.111939 CTCGCTCCCCGTGACTAG 58.888 66.667 0.00 0.00 38.35 2.57
69 70 2.439701 TCGCTCCCCGTGACTAGG 60.440 66.667 0.00 0.00 38.35 3.02
75 76 3.390521 CCCGTGACTAGGGCTGCA 61.391 66.667 0.50 0.00 42.77 4.41
76 77 2.662596 CCGTGACTAGGGCTGCAA 59.337 61.111 0.50 0.00 0.00 4.08
77 78 1.448540 CCGTGACTAGGGCTGCAAG 60.449 63.158 0.50 0.00 0.00 4.01
93 94 3.892918 GCAAGCAGCATCTCGATTTAT 57.107 42.857 0.00 0.00 44.79 1.40
94 95 3.808095 GCAAGCAGCATCTCGATTTATC 58.192 45.455 0.00 0.00 44.79 1.75
95 96 3.364764 GCAAGCAGCATCTCGATTTATCC 60.365 47.826 0.00 0.00 44.79 2.59
96 97 3.051081 AGCAGCATCTCGATTTATCCC 57.949 47.619 0.00 0.00 0.00 3.85
97 98 2.369860 AGCAGCATCTCGATTTATCCCA 59.630 45.455 0.00 0.00 0.00 4.37
98 99 2.481952 GCAGCATCTCGATTTATCCCAC 59.518 50.000 0.00 0.00 0.00 4.61
99 100 2.733552 CAGCATCTCGATTTATCCCACG 59.266 50.000 0.00 0.00 0.00 4.94
100 101 2.628178 AGCATCTCGATTTATCCCACGA 59.372 45.455 0.00 0.00 0.00 4.35
101 102 3.069586 AGCATCTCGATTTATCCCACGAA 59.930 43.478 0.00 0.00 34.50 3.85
102 103 3.807622 GCATCTCGATTTATCCCACGAAA 59.192 43.478 0.00 0.00 34.50 3.46
103 104 4.452455 GCATCTCGATTTATCCCACGAAAT 59.548 41.667 0.00 0.00 34.50 2.17
104 105 5.615544 GCATCTCGATTTATCCCACGAAATG 60.616 44.000 0.00 0.00 36.65 2.32
105 106 5.270893 TCTCGATTTATCCCACGAAATGA 57.729 39.130 0.00 0.00 34.50 2.57
106 107 5.666462 TCTCGATTTATCCCACGAAATGAA 58.334 37.500 0.00 0.00 34.50 2.57
107 108 6.110033 TCTCGATTTATCCCACGAAATGAAA 58.890 36.000 0.00 0.00 34.50 2.69
108 109 6.765989 TCTCGATTTATCCCACGAAATGAAAT 59.234 34.615 0.00 0.00 34.50 2.17
109 110 7.282224 TCTCGATTTATCCCACGAAATGAAATT 59.718 33.333 0.00 0.00 38.98 1.82
110 111 8.439993 TCGATTTATCCCACGAAATGAAATTA 57.560 30.769 0.00 0.00 33.67 1.40
111 112 8.894731 TCGATTTATCCCACGAAATGAAATTAA 58.105 29.630 0.00 0.00 33.67 1.40
112 113 9.677567 CGATTTATCCCACGAAATGAAATTAAT 57.322 29.630 0.00 0.00 33.67 1.40
116 117 9.964303 TTATCCCACGAAATGAAATTAATCATG 57.036 29.630 0.00 0.00 39.90 3.07
117 118 7.403312 TCCCACGAAATGAAATTAATCATGT 57.597 32.000 0.00 0.00 39.90 3.21
118 119 8.512966 TCCCACGAAATGAAATTAATCATGTA 57.487 30.769 0.00 0.00 39.90 2.29
119 120 8.620416 TCCCACGAAATGAAATTAATCATGTAG 58.380 33.333 0.00 0.00 39.90 2.74
120 121 7.379529 CCCACGAAATGAAATTAATCATGTAGC 59.620 37.037 0.00 0.00 39.90 3.58
121 122 8.131100 CCACGAAATGAAATTAATCATGTAGCT 58.869 33.333 0.00 0.00 39.90 3.32
122 123 9.162793 CACGAAATGAAATTAATCATGTAGCTC 57.837 33.333 0.00 0.00 39.90 4.09
123 124 8.064222 ACGAAATGAAATTAATCATGTAGCTCG 58.936 33.333 0.00 0.00 39.90 5.03
124 125 8.064222 CGAAATGAAATTAATCATGTAGCTCGT 58.936 33.333 0.00 0.00 39.90 4.18
125 126 9.162793 GAAATGAAATTAATCATGTAGCTCGTG 57.837 33.333 0.00 0.00 39.90 4.35
126 127 6.048073 TGAAATTAATCATGTAGCTCGTGC 57.952 37.500 0.07 0.07 40.05 5.34
127 128 4.715520 AATTAATCATGTAGCTCGTGCG 57.284 40.909 3.48 0.00 45.42 5.34
128 129 3.430333 TTAATCATGTAGCTCGTGCGA 57.570 42.857 3.48 0.00 45.42 5.10
129 130 2.293677 AATCATGTAGCTCGTGCGAA 57.706 45.000 3.48 0.00 45.42 4.70
130 131 1.560923 ATCATGTAGCTCGTGCGAAC 58.439 50.000 3.48 7.36 45.42 3.95
131 132 0.242555 TCATGTAGCTCGTGCGAACA 59.757 50.000 18.39 18.39 45.42 3.18
132 133 1.135112 TCATGTAGCTCGTGCGAACAT 60.135 47.619 20.48 20.48 45.05 2.71
133 134 1.660607 CATGTAGCTCGTGCGAACATT 59.339 47.619 22.41 11.25 43.21 2.71
134 135 1.790755 TGTAGCTCGTGCGAACATTT 58.209 45.000 14.07 0.00 45.42 2.32
135 136 2.139917 TGTAGCTCGTGCGAACATTTT 58.860 42.857 14.07 0.00 45.42 1.82
136 137 2.546368 TGTAGCTCGTGCGAACATTTTT 59.454 40.909 14.07 0.00 45.42 1.94
137 138 2.036556 AGCTCGTGCGAACATTTTTG 57.963 45.000 3.48 0.00 45.42 2.44
138 139 0.430858 GCTCGTGCGAACATTTTTGC 59.569 50.000 0.00 0.00 41.97 3.68
143 144 1.207390 TGCGAACATTTTTGCACAGC 58.793 45.000 2.24 0.00 45.65 4.40
144 145 1.207390 GCGAACATTTTTGCACAGCA 58.793 45.000 0.00 0.00 41.33 4.41
145 146 1.794116 GCGAACATTTTTGCACAGCAT 59.206 42.857 0.00 0.00 41.33 3.79
146 147 2.221517 GCGAACATTTTTGCACAGCATT 59.778 40.909 0.00 0.00 41.33 3.56
147 148 3.303263 GCGAACATTTTTGCACAGCATTT 60.303 39.130 0.00 0.00 41.33 2.32
148 149 4.205334 CGAACATTTTTGCACAGCATTTG 58.795 39.130 0.00 0.00 38.76 2.32
149 150 4.529446 GAACATTTTTGCACAGCATTTGG 58.471 39.130 0.00 0.00 38.76 3.28
150 151 2.291190 ACATTTTTGCACAGCATTTGGC 59.709 40.909 0.00 0.00 38.76 4.52
165 166 6.913873 GCATTTGGCTAAAATCAACATCAT 57.086 33.333 0.00 0.00 36.28 2.45
167 168 8.597662 GCATTTGGCTAAAATCAACATCATAT 57.402 30.769 0.00 0.00 36.28 1.78
168 169 9.048446 GCATTTGGCTAAAATCAACATCATATT 57.952 29.630 0.00 0.00 36.28 1.28
193 194 9.865321 TTTATACTAATGGTATTGTCCGCTATC 57.135 33.333 0.00 0.00 41.03 2.08
194 195 5.148651 ACTAATGGTATTGTCCGCTATCC 57.851 43.478 0.00 0.00 0.00 2.59
195 196 3.418684 AATGGTATTGTCCGCTATCCC 57.581 47.619 0.00 0.00 0.00 3.85
196 197 0.677288 TGGTATTGTCCGCTATCCCG 59.323 55.000 0.00 0.00 0.00 5.14
197 198 0.677842 GGTATTGTCCGCTATCCCGT 59.322 55.000 0.00 0.00 0.00 5.28
198 199 1.336609 GGTATTGTCCGCTATCCCGTC 60.337 57.143 0.00 0.00 0.00 4.79
199 200 0.963962 TATTGTCCGCTATCCCGTCC 59.036 55.000 0.00 0.00 0.00 4.79
200 201 2.083835 ATTGTCCGCTATCCCGTCCG 62.084 60.000 0.00 0.00 0.00 4.79
201 202 3.214845 GTCCGCTATCCCGTCCGT 61.215 66.667 0.00 0.00 0.00 4.69
202 203 2.440796 TCCGCTATCCCGTCCGTT 60.441 61.111 0.00 0.00 0.00 4.44
203 204 2.053865 TCCGCTATCCCGTCCGTTT 61.054 57.895 0.00 0.00 0.00 3.60
204 205 1.153509 CCGCTATCCCGTCCGTTTT 60.154 57.895 0.00 0.00 0.00 2.43
205 206 1.426041 CCGCTATCCCGTCCGTTTTG 61.426 60.000 0.00 0.00 0.00 2.44
206 207 0.738412 CGCTATCCCGTCCGTTTTGT 60.738 55.000 0.00 0.00 0.00 2.83
207 208 1.469595 CGCTATCCCGTCCGTTTTGTA 60.470 52.381 0.00 0.00 0.00 2.41
208 209 1.929169 GCTATCCCGTCCGTTTTGTAC 59.071 52.381 0.00 0.00 0.00 2.90
209 210 2.543641 CTATCCCGTCCGTTTTGTACC 58.456 52.381 0.00 0.00 0.00 3.34
210 211 0.036105 ATCCCGTCCGTTTTGTACCC 60.036 55.000 0.00 0.00 0.00 3.69
211 212 1.120795 TCCCGTCCGTTTTGTACCCT 61.121 55.000 0.00 0.00 0.00 4.34
212 213 0.607620 CCCGTCCGTTTTGTACCCTA 59.392 55.000 0.00 0.00 0.00 3.53
213 214 1.672737 CCCGTCCGTTTTGTACCCTAC 60.673 57.143 0.00 0.00 0.00 3.18
214 215 1.273327 CCGTCCGTTTTGTACCCTACT 59.727 52.381 0.00 0.00 0.00 2.57
215 216 2.599659 CGTCCGTTTTGTACCCTACTC 58.400 52.381 0.00 0.00 0.00 2.59
216 217 2.030007 CGTCCGTTTTGTACCCTACTCA 60.030 50.000 0.00 0.00 0.00 3.41
217 218 3.552684 CGTCCGTTTTGTACCCTACTCAA 60.553 47.826 0.00 0.00 0.00 3.02
218 219 4.572909 GTCCGTTTTGTACCCTACTCAAT 58.427 43.478 0.00 0.00 0.00 2.57
219 220 5.622007 CGTCCGTTTTGTACCCTACTCAATA 60.622 44.000 0.00 0.00 0.00 1.90
220 221 6.165577 GTCCGTTTTGTACCCTACTCAATAA 58.834 40.000 0.00 0.00 0.00 1.40
221 222 6.820152 GTCCGTTTTGTACCCTACTCAATAAT 59.180 38.462 0.00 0.00 0.00 1.28
222 223 6.819649 TCCGTTTTGTACCCTACTCAATAATG 59.180 38.462 0.00 0.00 0.00 1.90
223 224 6.457799 CCGTTTTGTACCCTACTCAATAATGC 60.458 42.308 0.00 0.00 0.00 3.56
224 225 6.315393 CGTTTTGTACCCTACTCAATAATGCT 59.685 38.462 0.00 0.00 0.00 3.79
225 226 7.493320 CGTTTTGTACCCTACTCAATAATGCTA 59.507 37.037 0.00 0.00 0.00 3.49
226 227 9.169592 GTTTTGTACCCTACTCAATAATGCTAA 57.830 33.333 0.00 0.00 0.00 3.09
227 228 9.742144 TTTTGTACCCTACTCAATAATGCTAAA 57.258 29.630 0.00 0.00 0.00 1.85
228 229 9.914834 TTTGTACCCTACTCAATAATGCTAAAT 57.085 29.630 0.00 0.00 0.00 1.40
246 247 7.902032 TGCTAAATATACAAAGAGTTACACGC 58.098 34.615 0.00 0.00 0.00 5.34
247 248 7.546316 TGCTAAATATACAAAGAGTTACACGCA 59.454 33.333 0.00 0.00 0.00 5.24
248 249 8.385111 GCTAAATATACAAAGAGTTACACGCAA 58.615 33.333 0.00 0.00 0.00 4.85
253 254 5.994887 ACAAAGAGTTACACGCAATTACA 57.005 34.783 0.00 0.00 0.00 2.41
254 255 5.744490 ACAAAGAGTTACACGCAATTACAC 58.256 37.500 0.00 0.00 0.00 2.90
255 256 5.294799 ACAAAGAGTTACACGCAATTACACA 59.705 36.000 0.00 0.00 0.00 3.72
256 257 4.985044 AGAGTTACACGCAATTACACAC 57.015 40.909 0.00 0.00 0.00 3.82
257 258 3.744426 AGAGTTACACGCAATTACACACC 59.256 43.478 0.00 0.00 0.00 4.16
258 259 2.477375 AGTTACACGCAATTACACACCG 59.523 45.455 0.00 0.00 0.00 4.94
259 260 2.435533 TACACGCAATTACACACCGA 57.564 45.000 0.00 0.00 0.00 4.69
260 261 0.863144 ACACGCAATTACACACCGAC 59.137 50.000 0.00 0.00 0.00 4.79
261 262 1.144969 CACGCAATTACACACCGACT 58.855 50.000 0.00 0.00 0.00 4.18
262 263 2.288334 ACACGCAATTACACACCGACTA 60.288 45.455 0.00 0.00 0.00 2.59
263 264 2.344441 CACGCAATTACACACCGACTAG 59.656 50.000 0.00 0.00 0.00 2.57
264 265 2.229543 ACGCAATTACACACCGACTAGA 59.770 45.455 0.00 0.00 0.00 2.43
265 266 3.119245 ACGCAATTACACACCGACTAGAT 60.119 43.478 0.00 0.00 0.00 1.98
266 267 3.863424 CGCAATTACACACCGACTAGATT 59.137 43.478 0.00 0.00 0.00 2.40
267 268 4.328983 CGCAATTACACACCGACTAGATTT 59.671 41.667 0.00 0.00 0.00 2.17
268 269 5.163893 CGCAATTACACACCGACTAGATTTT 60.164 40.000 0.00 0.00 0.00 1.82
269 270 6.608610 GCAATTACACACCGACTAGATTTTT 58.391 36.000 0.00 0.00 0.00 1.94
294 295 9.959749 TTTTTCATCTACTAACCAATCACAAAC 57.040 29.630 0.00 0.00 0.00 2.93
295 296 8.918202 TTTCATCTACTAACCAATCACAAACT 57.082 30.769 0.00 0.00 0.00 2.66
296 297 8.918202 TTCATCTACTAACCAATCACAAACTT 57.082 30.769 0.00 0.00 0.00 2.66
297 298 8.322906 TCATCTACTAACCAATCACAAACTTG 57.677 34.615 0.00 0.00 0.00 3.16
298 299 7.936847 TCATCTACTAACCAATCACAAACTTGT 59.063 33.333 0.00 0.00 43.36 3.16
299 300 7.724305 TCTACTAACCAATCACAAACTTGTC 57.276 36.000 0.00 0.00 39.91 3.18
300 301 7.506114 TCTACTAACCAATCACAAACTTGTCT 58.494 34.615 0.00 0.00 39.91 3.41
301 302 6.619801 ACTAACCAATCACAAACTTGTCTC 57.380 37.500 0.00 0.00 39.91 3.36
302 303 4.918810 AACCAATCACAAACTTGTCTCC 57.081 40.909 0.00 0.00 39.91 3.71
303 304 3.222603 ACCAATCACAAACTTGTCTCCC 58.777 45.455 0.00 0.00 39.91 4.30
304 305 3.117512 ACCAATCACAAACTTGTCTCCCT 60.118 43.478 0.00 0.00 39.91 4.20
305 306 3.503748 CCAATCACAAACTTGTCTCCCTC 59.496 47.826 0.00 0.00 39.91 4.30
306 307 4.392940 CAATCACAAACTTGTCTCCCTCT 58.607 43.478 0.00 0.00 39.91 3.69
307 308 3.475566 TCACAAACTTGTCTCCCTCTG 57.524 47.619 0.00 0.00 39.91 3.35
308 309 3.038280 TCACAAACTTGTCTCCCTCTGA 58.962 45.455 0.00 0.00 39.91 3.27
309 310 3.648067 TCACAAACTTGTCTCCCTCTGAT 59.352 43.478 0.00 0.00 39.91 2.90
310 311 4.103153 TCACAAACTTGTCTCCCTCTGATT 59.897 41.667 0.00 0.00 39.91 2.57
311 312 4.823989 CACAAACTTGTCTCCCTCTGATTT 59.176 41.667 0.00 0.00 39.91 2.17
312 313 5.300286 CACAAACTTGTCTCCCTCTGATTTT 59.700 40.000 0.00 0.00 39.91 1.82
313 314 5.893824 ACAAACTTGTCTCCCTCTGATTTTT 59.106 36.000 0.00 0.00 36.50 1.94
314 315 7.013274 CACAAACTTGTCTCCCTCTGATTTTTA 59.987 37.037 0.00 0.00 39.91 1.52
315 316 7.229506 ACAAACTTGTCTCCCTCTGATTTTTAG 59.770 37.037 0.00 0.00 36.50 1.85
316 317 5.810095 ACTTGTCTCCCTCTGATTTTTAGG 58.190 41.667 0.00 0.00 0.00 2.69
322 323 3.018423 CCTCTGATTTTTAGGGGGTGG 57.982 52.381 0.00 0.00 31.85 4.61
323 324 2.580783 CCTCTGATTTTTAGGGGGTGGA 59.419 50.000 0.00 0.00 31.85 4.02
324 325 3.621558 CTCTGATTTTTAGGGGGTGGAC 58.378 50.000 0.00 0.00 0.00 4.02
325 326 2.310647 TCTGATTTTTAGGGGGTGGACC 59.689 50.000 0.00 0.00 39.11 4.46
326 327 1.004979 TGATTTTTAGGGGGTGGACCG 59.995 52.381 0.00 0.00 41.60 4.79
335 336 3.728373 GGTGGACCGCCTTCCCAT 61.728 66.667 17.39 0.00 34.33 4.00
336 337 2.355115 GTGGACCGCCTTCCCATT 59.645 61.111 0.00 0.00 34.33 3.16
337 338 1.304134 GTGGACCGCCTTCCCATTT 60.304 57.895 0.00 0.00 34.33 2.32
338 339 0.034863 GTGGACCGCCTTCCCATTTA 60.035 55.000 0.00 0.00 34.33 1.40
339 340 0.923358 TGGACCGCCTTCCCATTTAT 59.077 50.000 0.00 0.00 34.33 1.40
340 341 1.286553 TGGACCGCCTTCCCATTTATT 59.713 47.619 0.00 0.00 34.33 1.40
341 342 1.681264 GGACCGCCTTCCCATTTATTG 59.319 52.381 0.00 0.00 0.00 1.90
342 343 2.650322 GACCGCCTTCCCATTTATTGA 58.350 47.619 0.00 0.00 0.00 2.57
343 344 3.222603 GACCGCCTTCCCATTTATTGAT 58.777 45.455 0.00 0.00 0.00 2.57
344 345 3.222603 ACCGCCTTCCCATTTATTGATC 58.777 45.455 0.00 0.00 0.00 2.92
345 346 3.221771 CCGCCTTCCCATTTATTGATCA 58.778 45.455 0.00 0.00 0.00 2.92
346 347 3.636300 CCGCCTTCCCATTTATTGATCAA 59.364 43.478 11.26 11.26 0.00 2.57
347 348 4.281688 CCGCCTTCCCATTTATTGATCAAT 59.718 41.667 23.75 23.75 34.93 2.57
348 349 5.221501 CCGCCTTCCCATTTATTGATCAATT 60.222 40.000 25.26 5.77 32.50 2.32
349 350 6.015519 CCGCCTTCCCATTTATTGATCAATTA 60.016 38.462 25.26 14.43 32.50 1.40
350 351 7.432869 CGCCTTCCCATTTATTGATCAATTAA 58.567 34.615 25.26 21.89 32.50 1.40
351 352 7.925483 CGCCTTCCCATTTATTGATCAATTAAA 59.075 33.333 25.26 20.52 32.50 1.52
352 353 9.783081 GCCTTCCCATTTATTGATCAATTAAAT 57.217 29.630 25.26 21.53 32.50 1.40
386 387 9.543783 TTTTGTAAAAGGTTGTAACTTGTTTGT 57.456 25.926 0.00 0.00 0.00 2.83
388 389 9.623350 TTGTAAAAGGTTGTAACTTGTTTGTAC 57.377 29.630 0.00 0.00 0.00 2.90
389 390 7.961827 TGTAAAAGGTTGTAACTTGTTTGTACG 59.038 33.333 0.00 0.00 0.00 3.67
390 391 6.499234 AAAGGTTGTAACTTGTTTGTACGT 57.501 33.333 0.00 0.00 0.00 3.57
391 392 5.473796 AGGTTGTAACTTGTTTGTACGTG 57.526 39.130 0.00 0.00 0.00 4.49
392 393 4.937015 AGGTTGTAACTTGTTTGTACGTGT 59.063 37.500 0.00 0.00 0.00 4.49
393 394 6.105333 AGGTTGTAACTTGTTTGTACGTGTA 58.895 36.000 0.00 0.00 0.00 2.90
394 395 6.256321 AGGTTGTAACTTGTTTGTACGTGTAG 59.744 38.462 0.00 0.00 0.00 2.74
395 396 5.640218 TGTAACTTGTTTGTACGTGTAGC 57.360 39.130 0.00 0.00 0.00 3.58
396 397 5.107824 TGTAACTTGTTTGTACGTGTAGCA 58.892 37.500 0.00 0.00 0.00 3.49
397 398 5.754406 TGTAACTTGTTTGTACGTGTAGCAT 59.246 36.000 0.00 0.00 0.00 3.79
398 399 5.744666 AACTTGTTTGTACGTGTAGCATT 57.255 34.783 0.00 0.00 0.00 3.56
399 400 6.847956 AACTTGTTTGTACGTGTAGCATTA 57.152 33.333 0.00 0.00 0.00 1.90
400 401 6.219302 ACTTGTTTGTACGTGTAGCATTAC 57.781 37.500 0.00 0.00 0.00 1.89
401 402 5.987347 ACTTGTTTGTACGTGTAGCATTACT 59.013 36.000 0.00 0.00 0.00 2.24
402 403 6.145048 ACTTGTTTGTACGTGTAGCATTACTC 59.855 38.462 0.00 0.00 0.00 2.59
403 404 4.618067 TGTTTGTACGTGTAGCATTACTCG 59.382 41.667 0.00 6.16 46.58 4.18
408 409 2.724349 CGTGTAGCATTACTCGTACCC 58.276 52.381 0.00 0.00 40.20 3.69
409 410 2.357009 CGTGTAGCATTACTCGTACCCT 59.643 50.000 0.00 0.00 40.20 4.34
410 411 3.561310 CGTGTAGCATTACTCGTACCCTA 59.439 47.826 0.00 0.00 40.20 3.53
411 412 4.553547 CGTGTAGCATTACTCGTACCCTAC 60.554 50.000 0.00 0.00 40.20 3.18
412 413 3.885297 TGTAGCATTACTCGTACCCTACC 59.115 47.826 0.00 0.00 0.00 3.18
413 414 2.314246 AGCATTACTCGTACCCTACCC 58.686 52.381 0.00 0.00 0.00 3.69
414 415 1.342496 GCATTACTCGTACCCTACCCC 59.658 57.143 0.00 0.00 0.00 4.95
415 416 2.954792 CATTACTCGTACCCTACCCCT 58.045 52.381 0.00 0.00 0.00 4.79
416 417 2.442236 TTACTCGTACCCTACCCCTG 57.558 55.000 0.00 0.00 0.00 4.45
417 418 1.595311 TACTCGTACCCTACCCCTGA 58.405 55.000 0.00 0.00 0.00 3.86
418 419 0.033699 ACTCGTACCCTACCCCTGAC 60.034 60.000 0.00 0.00 0.00 3.51
419 420 0.258194 CTCGTACCCTACCCCTGACT 59.742 60.000 0.00 0.00 0.00 3.41
420 421 0.257039 TCGTACCCTACCCCTGACTC 59.743 60.000 0.00 0.00 0.00 3.36
421 422 1.099879 CGTACCCTACCCCTGACTCG 61.100 65.000 0.00 0.00 0.00 4.18
422 423 0.033699 GTACCCTACCCCTGACTCGT 60.034 60.000 0.00 0.00 0.00 4.18
423 424 1.212935 GTACCCTACCCCTGACTCGTA 59.787 57.143 0.00 0.00 0.00 3.43
424 425 0.932211 ACCCTACCCCTGACTCGTAT 59.068 55.000 0.00 0.00 0.00 3.06
425 426 1.290130 ACCCTACCCCTGACTCGTATT 59.710 52.381 0.00 0.00 0.00 1.89
426 427 1.962100 CCCTACCCCTGACTCGTATTC 59.038 57.143 0.00 0.00 0.00 1.75
427 428 1.962100 CCTACCCCTGACTCGTATTCC 59.038 57.143 0.00 0.00 0.00 3.01
428 429 2.662866 CTACCCCTGACTCGTATTCCA 58.337 52.381 0.00 0.00 0.00 3.53
429 430 1.486211 ACCCCTGACTCGTATTCCAG 58.514 55.000 0.00 0.00 0.00 3.86
430 431 1.273098 ACCCCTGACTCGTATTCCAGT 60.273 52.381 0.00 0.00 0.00 4.00
431 432 1.831736 CCCCTGACTCGTATTCCAGTT 59.168 52.381 0.00 0.00 0.00 3.16
432 433 2.159085 CCCCTGACTCGTATTCCAGTTC 60.159 54.545 0.00 0.00 0.00 3.01
433 434 2.761208 CCCTGACTCGTATTCCAGTTCT 59.239 50.000 0.00 0.00 0.00 3.01
434 435 3.195825 CCCTGACTCGTATTCCAGTTCTT 59.804 47.826 0.00 0.00 0.00 2.52
435 436 4.177026 CCTGACTCGTATTCCAGTTCTTG 58.823 47.826 0.00 0.00 0.00 3.02
436 437 4.082190 CCTGACTCGTATTCCAGTTCTTGA 60.082 45.833 0.00 0.00 0.00 3.02
437 438 5.060662 TGACTCGTATTCCAGTTCTTGAG 57.939 43.478 0.00 0.00 0.00 3.02
438 439 3.851098 ACTCGTATTCCAGTTCTTGAGC 58.149 45.455 0.00 0.00 0.00 4.26
439 440 3.511934 ACTCGTATTCCAGTTCTTGAGCT 59.488 43.478 0.00 0.00 0.00 4.09
440 441 3.849911 TCGTATTCCAGTTCTTGAGCTG 58.150 45.455 7.38 7.38 0.00 4.24
463 464 1.969064 TCGTGCCATTTTCCGTGGG 60.969 57.895 0.00 0.00 37.22 4.61
464 465 2.261361 GTGCCATTTTCCGTGGGC 59.739 61.111 0.00 0.00 46.58 5.36
522 523 1.265905 CTCACCCGTACCAAAACAAGC 59.734 52.381 0.00 0.00 0.00 4.01
546 547 0.107643 TCAATCGGCTCAACCACACA 59.892 50.000 0.00 0.00 39.03 3.72
551 552 0.307760 CGGCTCAACCACACAAGAAC 59.692 55.000 0.00 0.00 39.03 3.01
552 553 0.668535 GGCTCAACCACACAAGAACC 59.331 55.000 0.00 0.00 38.86 3.62
553 554 0.307760 GCTCAACCACACAAGAACCG 59.692 55.000 0.00 0.00 0.00 4.44
554 555 1.948104 CTCAACCACACAAGAACCGA 58.052 50.000 0.00 0.00 0.00 4.69
555 556 2.285083 CTCAACCACACAAGAACCGAA 58.715 47.619 0.00 0.00 0.00 4.30
568 569 2.743928 CCGAACACCAGCAGCCTC 60.744 66.667 0.00 0.00 0.00 4.70
569 570 2.031012 CGAACACCAGCAGCCTCA 59.969 61.111 0.00 0.00 0.00 3.86
581 582 1.300697 AGCCTCACCGTCAAACGTC 60.301 57.895 0.00 0.00 40.58 4.34
668 675 3.072211 CACCGGTTTCTCCTTCCTAAAC 58.928 50.000 2.97 0.00 33.37 2.01
692 702 3.071459 GACGCAGCACCGTTGATCG 62.071 63.158 3.20 0.00 42.24 3.69
701 711 0.104304 ACCGTTGATCGATAGGCCAC 59.896 55.000 5.01 0.00 42.86 5.01
899 925 4.778143 GACGCGCATCCAACCCCT 62.778 66.667 5.73 0.00 0.00 4.79
920 948 4.353437 GCTGCTGCTGTGTTGCCC 62.353 66.667 8.53 0.00 36.03 5.36
1134 1167 0.741927 CCGGTAGGGTTTAAGTGGCG 60.742 60.000 0.00 0.00 0.00 5.69
1135 1168 0.741927 CGGTAGGGTTTAAGTGGCGG 60.742 60.000 0.00 0.00 0.00 6.13
1153 1186 0.035439 GGCGGGGTTTCAGAATCTGA 60.035 55.000 9.18 9.18 38.87 3.27
1154 1187 1.373570 GCGGGGTTTCAGAATCTGAG 58.626 55.000 13.11 2.01 41.75 3.35
1155 1188 1.339151 GCGGGGTTTCAGAATCTGAGT 60.339 52.381 13.11 0.00 41.75 3.41
1156 1189 2.350522 CGGGGTTTCAGAATCTGAGTG 58.649 52.381 13.11 0.00 41.75 3.51
1157 1190 2.289694 CGGGGTTTCAGAATCTGAGTGT 60.290 50.000 13.11 0.00 41.75 3.55
1158 1191 3.756117 GGGGTTTCAGAATCTGAGTGTT 58.244 45.455 13.11 0.00 41.75 3.32
1159 1192 4.145052 GGGGTTTCAGAATCTGAGTGTTT 58.855 43.478 13.11 0.00 41.75 2.83
1160 1193 4.022849 GGGGTTTCAGAATCTGAGTGTTTG 60.023 45.833 13.11 0.00 41.75 2.93
1161 1194 4.540824 GGTTTCAGAATCTGAGTGTTTGC 58.459 43.478 13.11 0.81 41.75 3.68
1168 1663 4.629200 AGAATCTGAGTGTTTGCGAGATTC 59.371 41.667 0.00 0.00 44.91 2.52
1244 1739 1.361271 CCGCCGATTCCGTAGCTTA 59.639 57.895 0.00 0.00 0.00 3.09
1247 1742 2.159282 CCGCCGATTCCGTAGCTTATAT 60.159 50.000 0.00 0.00 0.00 0.86
1248 1743 3.508762 CGCCGATTCCGTAGCTTATATT 58.491 45.455 0.00 0.00 0.00 1.28
1250 1745 4.491676 GCCGATTCCGTAGCTTATATTCA 58.508 43.478 0.00 0.00 0.00 2.57
1268 1763 1.002250 CAGTCGAAACGTCCGTGGAG 61.002 60.000 9.58 0.00 0.00 3.86
1271 1768 0.318107 TCGAAACGTCCGTGGAGTTC 60.318 55.000 9.58 0.00 0.00 3.01
1298 1800 1.195442 TTGGATCTGGCACCGTACCA 61.195 55.000 0.00 0.00 35.40 3.25
1354 1861 2.687200 ATCTGGGCGGTGCTACCA 60.687 61.111 6.21 0.00 38.47 3.25
1363 1870 0.930310 CGGTGCTACCACATTCATCG 59.070 55.000 6.21 0.00 43.88 3.84
1367 1874 2.348666 GTGCTACCACATTCATCGTGAC 59.651 50.000 0.00 0.00 41.67 3.67
1369 1876 3.198068 GCTACCACATTCATCGTGACAT 58.802 45.455 0.00 0.00 36.43 3.06
1371 1878 4.209288 GCTACCACATTCATCGTGACATAC 59.791 45.833 0.00 0.00 36.43 2.39
1372 1879 4.200838 ACCACATTCATCGTGACATACA 57.799 40.909 0.00 0.00 36.43 2.29
1373 1880 4.769688 ACCACATTCATCGTGACATACAT 58.230 39.130 0.00 0.00 36.43 2.29
1374 1881 5.185454 ACCACATTCATCGTGACATACATT 58.815 37.500 0.00 0.00 36.43 2.71
1396 1903 7.230510 ACATTTATAACCGCATGTGACCATATT 59.769 33.333 8.11 0.00 0.00 1.28
1399 1906 2.722094 ACCGCATGTGACCATATTTGT 58.278 42.857 8.11 0.00 0.00 2.83
1401 1908 2.453080 CGCATGTGACCATATTTGTGC 58.547 47.619 0.00 0.00 0.00 4.57
1405 1912 2.158559 TGTGACCATATTTGTGCGCTT 58.841 42.857 9.73 0.00 0.00 4.68
1502 2009 1.069432 GTGATGTGATGCCATGATCGC 60.069 52.381 0.00 0.00 34.08 4.58
1516 2024 3.165058 TGATCGCGCTTACAGATCTTT 57.835 42.857 18.76 0.00 40.84 2.52
1521 2029 4.678622 TCGCGCTTACAGATCTTTATCAA 58.321 39.130 5.56 0.00 34.28 2.57
1563 2071 0.177836 TAGCGCTGTATGGTGCATGT 59.822 50.000 22.90 0.00 44.17 3.21
1573 2081 4.629634 TGTATGGTGCATGTAAAGTCTTCG 59.370 41.667 0.00 0.00 0.00 3.79
1576 2084 3.880490 TGGTGCATGTAAAGTCTTCGTTT 59.120 39.130 0.00 0.00 0.00 3.60
1578 2086 5.049954 TGGTGCATGTAAAGTCTTCGTTTAC 60.050 40.000 0.00 0.00 39.72 2.01
1648 2156 2.797837 TGCTTCATGGTAGCATGCC 58.202 52.632 26.47 17.74 43.30 4.40
1682 2190 4.504858 CCACTAAAGGCGTCTCACTTTAT 58.495 43.478 0.00 0.00 38.19 1.40
1848 2356 4.734843 AGTAAAGTATGGGGGTTGTTGT 57.265 40.909 0.00 0.00 0.00 3.32
1881 2391 6.691754 TGCTGTGTTCAATGAGAAAAAGTA 57.308 33.333 0.00 0.00 38.13 2.24
1884 2394 9.013229 TGCTGTGTTCAATGAGAAAAAGTATAT 57.987 29.630 0.00 0.00 38.13 0.86
2121 2653 8.662781 TTATGCCTGAACACTATTTGATAGAC 57.337 34.615 2.18 0.00 36.68 2.59
2141 2673 5.401531 GACTGATAGTCAACCAACCTACA 57.598 43.478 4.20 0.00 44.45 2.74
2145 2677 5.730550 TGATAGTCAACCAACCTACATGAC 58.269 41.667 0.00 0.00 40.45 3.06
2147 2679 4.008074 AGTCAACCAACCTACATGACAG 57.992 45.455 0.00 0.00 42.12 3.51
2184 2716 4.815846 GGCATTGTTTTTCCACTGTCAATT 59.184 37.500 0.00 0.00 0.00 2.32
2221 2753 6.208599 TCCCTAGTTCACTTATTTTTGCCTTG 59.791 38.462 0.00 0.00 0.00 3.61
2235 2767 4.355543 TTGCCTTGCTTACGAAATCATC 57.644 40.909 0.00 0.00 0.00 2.92
2294 2826 2.617532 CCTTCTCTGCTCCAAGGAAAGG 60.618 54.545 1.71 1.71 39.36 3.11
2390 2922 6.287525 TCTGGTATTGCAATCGTATCAATCA 58.712 36.000 16.86 1.86 33.13 2.57
2706 3251 4.038402 GCATGCTTGGCCTATAATTTGACT 59.962 41.667 11.37 0.00 0.00 3.41
2756 3301 9.467796 TTGTACCACATTGATTCAACCATAATA 57.532 29.630 0.15 0.00 0.00 0.98
2771 3316 9.802039 TCAACCATAATATAACCCTGTAATTCC 57.198 33.333 0.00 0.00 0.00 3.01
2823 3368 6.127925 TGCAATGTTTCTGAAAGCCTACTATG 60.128 38.462 2.48 0.00 0.00 2.23
2845 3390 3.004106 GCATCATAGGGCTTTGTTGCTAG 59.996 47.826 0.00 0.00 35.68 3.42
3069 3614 1.003355 GCAACAGACCTAGCTGGCA 60.003 57.895 0.00 0.00 40.20 4.92
3115 3664 7.359595 TGTTAAGTTTGTAACAGTGCATCATC 58.640 34.615 0.00 0.00 38.70 2.92
3124 3673 5.824904 AACAGTGCATCATCCATCTAAAC 57.175 39.130 0.00 0.00 0.00 2.01
3125 3674 4.202441 ACAGTGCATCATCCATCTAAACC 58.798 43.478 0.00 0.00 0.00 3.27
3158 3714 6.266168 TGGCCATAGTTTCTGTTTGTTATG 57.734 37.500 0.00 0.00 0.00 1.90
3209 3775 6.686130 AAAGTATTTTGTGAGTACGACTCG 57.314 37.500 0.00 0.00 41.39 4.18
3282 3850 5.890334 TCTTTTAGCAAAAGTTCCAGTGTG 58.110 37.500 16.01 0.00 46.18 3.82
3283 3851 5.417580 TCTTTTAGCAAAAGTTCCAGTGTGT 59.582 36.000 16.01 0.00 46.18 3.72
3287 3855 2.423538 GCAAAAGTTCCAGTGTGTCTGT 59.576 45.455 0.00 0.00 42.19 3.41
3296 3864 2.205074 CAGTGTGTCTGTGAGAACCAC 58.795 52.381 0.00 0.00 45.88 4.16
3328 3896 4.156739 GCCTTCTTCATTTTGATCCTTCGT 59.843 41.667 0.00 0.00 0.00 3.85
3416 3985 5.953183 TGCATGAAAATAAGCACTCGAAAT 58.047 33.333 0.00 0.00 31.05 2.17
3421 3990 9.162793 CATGAAAATAAGCACTCGAAATCATAC 57.837 33.333 0.00 0.00 0.00 2.39
3440 4009 7.750229 TCATACTTTTCAGTTTGAGATTGCT 57.250 32.000 0.00 0.00 36.42 3.91
3539 4108 2.034376 AGCGTGGAGGAGTCGAGT 59.966 61.111 0.00 0.00 0.00 4.18
3729 4299 1.136891 AGTGTTTTTGCCTGTCTTGCC 59.863 47.619 0.00 0.00 0.00 4.52
3736 4306 5.991933 TTTTGCCTGTCTTGCCATATTAA 57.008 34.783 0.00 0.00 0.00 1.40
3837 4409 3.343617 TGCTGTGCTGGAATTAACTACC 58.656 45.455 0.00 0.00 0.00 3.18
3844 4416 5.071923 GTGCTGGAATTAACTACCCCTATCT 59.928 44.000 0.00 0.00 0.00 1.98
3871 4443 4.798882 TGGGTTCAAATCTACACCTTGTT 58.201 39.130 0.00 0.00 0.00 2.83
3882 4454 5.784177 TCTACACCTTGTTTTCTAGAGCAG 58.216 41.667 0.00 0.00 0.00 4.24
3883 4455 3.142174 ACACCTTGTTTTCTAGAGCAGC 58.858 45.455 0.00 0.00 0.00 5.25
3888 4460 3.334583 TGTTTTCTAGAGCAGCCGATT 57.665 42.857 0.00 0.00 0.00 3.34
3944 4530 5.565592 ATGCTTTGCGATGTGAGAATTTA 57.434 34.783 0.00 0.00 0.00 1.40
3946 4532 5.767269 TGCTTTGCGATGTGAGAATTTAAA 58.233 33.333 0.00 0.00 0.00 1.52
3964 4550 2.818130 AACATTTTGACCGCTGCAAT 57.182 40.000 0.00 0.00 0.00 3.56
3965 4551 2.352503 ACATTTTGACCGCTGCAATC 57.647 45.000 0.00 0.00 0.00 2.67
3974 4560 3.809279 TGACCGCTGCAATCACTATTATG 59.191 43.478 0.00 0.00 0.00 1.90
3975 4561 3.808728 ACCGCTGCAATCACTATTATGT 58.191 40.909 0.00 0.00 0.00 2.29
3976 4562 4.956085 ACCGCTGCAATCACTATTATGTA 58.044 39.130 0.00 0.00 0.00 2.29
3977 4563 5.551233 ACCGCTGCAATCACTATTATGTAT 58.449 37.500 0.00 0.00 0.00 2.29
3978 4564 5.997746 ACCGCTGCAATCACTATTATGTATT 59.002 36.000 0.00 0.00 0.00 1.89
3979 4565 6.486657 ACCGCTGCAATCACTATTATGTATTT 59.513 34.615 0.00 0.00 0.00 1.40
3980 4566 7.659799 ACCGCTGCAATCACTATTATGTATTTA 59.340 33.333 0.00 0.00 0.00 1.40
3981 4567 8.668353 CCGCTGCAATCACTATTATGTATTTAT 58.332 33.333 0.00 0.00 0.00 1.40
4020 4606 7.761704 TGCAAACTTTTCTGCTGTTTTGTATTA 59.238 29.630 0.00 0.00 39.38 0.98
4021 4607 8.764287 GCAAACTTTTCTGCTGTTTTGTATTAT 58.236 29.630 0.00 0.00 35.62 1.28
4037 4684 6.854496 TGTATTATAATGAAACGCACTCCC 57.146 37.500 8.28 0.00 0.00 4.30
4038 4685 5.761234 TGTATTATAATGAAACGCACTCCCC 59.239 40.000 8.28 0.00 0.00 4.81
4039 4686 4.497291 TTATAATGAAACGCACTCCCCT 57.503 40.909 0.00 0.00 0.00 4.79
4040 4687 2.107950 TAATGAAACGCACTCCCCTG 57.892 50.000 0.00 0.00 0.00 4.45
4041 4688 0.609131 AATGAAACGCACTCCCCTGG 60.609 55.000 0.00 0.00 0.00 4.45
4044 4691 4.643387 AACGCACTCCCCTGGCAC 62.643 66.667 0.00 0.00 0.00 5.01
4052 4759 1.530013 CTCCCCTGGCACTTGCTTTG 61.530 60.000 0.38 0.00 41.70 2.77
4064 4771 2.695147 ACTTGCTTTGGGAAAGGTTCTG 59.305 45.455 0.00 0.00 38.93 3.02
4065 4772 2.452600 TGCTTTGGGAAAGGTTCTGT 57.547 45.000 0.00 0.00 38.93 3.41
4066 4773 2.745968 TGCTTTGGGAAAGGTTCTGTT 58.254 42.857 0.00 0.00 38.93 3.16
4068 4775 2.035961 GCTTTGGGAAAGGTTCTGTTCC 59.964 50.000 0.00 0.00 42.28 3.62
4119 4886 2.460918 ACTCGCATTCGAACCTAATCG 58.539 47.619 0.00 0.00 44.98 3.34
4136 4903 1.705256 TCGCGTGGTTAAACTAGCAG 58.295 50.000 5.77 4.69 0.00 4.24
4179 4946 6.389869 TCATTATGGGGAATCTTTGGTCTACT 59.610 38.462 0.00 0.00 0.00 2.57
4197 4964 3.454371 ACTCAGCCGTATTATCCACAC 57.546 47.619 0.00 0.00 0.00 3.82
4267 5037 7.336161 AGTAGTACAATCATCTGAGTGGTAC 57.664 40.000 11.78 10.70 43.65 3.34
4300 5078 2.481471 GCTAGTTTGGGCGGCATCC 61.481 63.158 12.47 0.00 0.00 3.51
4313 5091 2.826725 GCGGCATCCTTCTAGGTAGTAT 59.173 50.000 0.00 0.00 36.53 2.12
4429 5234 2.503382 GCCTCTCCCCTCGATGACC 61.503 68.421 0.00 0.00 0.00 4.02
4478 5284 4.717988 CTCGATTAGCTGCGAGCA 57.282 55.556 18.11 0.00 45.97 4.26
4479 5285 3.191903 CTCGATTAGCTGCGAGCAT 57.808 52.632 18.11 0.00 45.97 3.79
4480 5286 0.782981 CTCGATTAGCTGCGAGCATG 59.217 55.000 18.11 0.00 45.97 4.06
4482 5288 0.782981 CGATTAGCTGCGAGCATGAG 59.217 55.000 0.00 0.00 45.56 2.90
4547 5353 1.553248 TGGATAAACACGCCTGCTAGT 59.447 47.619 0.00 0.00 0.00 2.57
4548 5354 1.933853 GGATAAACACGCCTGCTAGTG 59.066 52.381 0.00 0.00 43.46 2.74
4549 5355 1.327764 GATAAACACGCCTGCTAGTGC 59.672 52.381 0.00 0.00 41.72 4.40
4550 5356 0.672401 TAAACACGCCTGCTAGTGCC 60.672 55.000 0.00 0.00 41.72 5.01
4551 5357 2.674563 AAACACGCCTGCTAGTGCCA 62.675 55.000 0.00 0.00 41.72 4.92
4552 5358 2.816958 CACGCCTGCTAGTGCCAG 60.817 66.667 0.00 0.00 38.71 4.85
4553 5359 4.767255 ACGCCTGCTAGTGCCAGC 62.767 66.667 0.00 0.00 42.15 4.85
4555 5361 4.415150 GCCTGCTAGTGCCAGCCA 62.415 66.667 0.00 0.00 41.04 4.75
4556 5362 2.593978 CCTGCTAGTGCCAGCCAT 59.406 61.111 0.00 0.00 41.04 4.40
4557 5363 1.077212 CCTGCTAGTGCCAGCCATT 60.077 57.895 0.00 0.00 41.04 3.16
4591 5397 1.235281 CCGGACTGTCACTGACGAGA 61.235 60.000 10.38 0.00 34.95 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.745232 AGGTGCGAACACTTGTTGAA 58.255 45.000 0.00 0.00 46.57 2.69
1 2 1.668751 GAAGGTGCGAACACTTGTTGA 59.331 47.619 0.00 0.00 46.57 3.18
3 4 1.400494 GTGAAGGTGCGAACACTTGTT 59.600 47.619 0.00 0.00 46.57 2.83
5 6 0.307760 GGTGAAGGTGCGAACACTTG 59.692 55.000 0.00 0.00 46.57 3.16
6 7 0.180406 AGGTGAAGGTGCGAACACTT 59.820 50.000 0.00 0.00 46.57 3.16
8 9 1.873698 TTAGGTGAAGGTGCGAACAC 58.126 50.000 0.00 0.00 46.66 3.32
10 11 3.974871 TTTTTAGGTGAAGGTGCGAAC 57.025 42.857 0.00 0.00 0.00 3.95
28 29 8.007152 CGAGCACTAGTTTTTGTTTTTGTTTTT 58.993 29.630 0.00 0.00 0.00 1.94
29 30 7.506474 CGAGCACTAGTTTTTGTTTTTGTTTT 58.494 30.769 0.00 0.00 0.00 2.43
30 31 6.400621 GCGAGCACTAGTTTTTGTTTTTGTTT 60.401 34.615 0.00 0.00 0.00 2.83
31 32 5.061684 GCGAGCACTAGTTTTTGTTTTTGTT 59.938 36.000 0.00 0.00 0.00 2.83
32 33 4.561213 GCGAGCACTAGTTTTTGTTTTTGT 59.439 37.500 0.00 0.00 0.00 2.83
33 34 4.798387 AGCGAGCACTAGTTTTTGTTTTTG 59.202 37.500 0.00 0.00 0.00 2.44
34 35 4.993905 AGCGAGCACTAGTTTTTGTTTTT 58.006 34.783 0.00 0.00 0.00 1.94
35 36 4.497507 GGAGCGAGCACTAGTTTTTGTTTT 60.498 41.667 0.00 0.00 0.00 2.43
36 37 3.003378 GGAGCGAGCACTAGTTTTTGTTT 59.997 43.478 0.00 0.00 0.00 2.83
37 38 2.548480 GGAGCGAGCACTAGTTTTTGTT 59.452 45.455 0.00 0.00 0.00 2.83
38 39 2.143925 GGAGCGAGCACTAGTTTTTGT 58.856 47.619 0.00 0.00 0.00 2.83
39 40 1.464997 GGGAGCGAGCACTAGTTTTTG 59.535 52.381 0.00 0.00 0.00 2.44
40 41 1.610886 GGGGAGCGAGCACTAGTTTTT 60.611 52.381 0.00 0.00 0.00 1.94
41 42 0.036294 GGGGAGCGAGCACTAGTTTT 60.036 55.000 0.00 0.00 0.00 2.43
42 43 1.597461 GGGGAGCGAGCACTAGTTT 59.403 57.895 0.00 0.00 0.00 2.66
43 44 2.711922 CGGGGAGCGAGCACTAGTT 61.712 63.158 0.00 0.00 0.00 2.24
44 45 3.141488 CGGGGAGCGAGCACTAGT 61.141 66.667 0.00 0.00 0.00 2.57
45 46 3.141488 ACGGGGAGCGAGCACTAG 61.141 66.667 0.00 0.00 0.00 2.57
46 47 3.449227 CACGGGGAGCGAGCACTA 61.449 66.667 0.00 0.00 0.00 2.74
49 50 3.931190 TAGTCACGGGGAGCGAGCA 62.931 63.158 0.00 0.00 0.00 4.26
50 51 3.127352 CTAGTCACGGGGAGCGAGC 62.127 68.421 0.00 0.00 0.00 5.03
51 52 2.482333 CCTAGTCACGGGGAGCGAG 61.482 68.421 0.00 0.00 0.00 5.03
52 53 2.439701 CCTAGTCACGGGGAGCGA 60.440 66.667 0.00 0.00 0.00 4.93
53 54 3.528370 CCCTAGTCACGGGGAGCG 61.528 72.222 3.08 0.00 45.18 5.03
54 55 3.851128 GCCCTAGTCACGGGGAGC 61.851 72.222 12.34 1.11 45.18 4.70
55 56 2.042843 AGCCCTAGTCACGGGGAG 60.043 66.667 12.34 0.00 45.18 4.30
56 57 2.363795 CAGCCCTAGTCACGGGGA 60.364 66.667 12.34 0.00 45.18 4.81
57 58 4.162690 GCAGCCCTAGTCACGGGG 62.163 72.222 4.71 4.71 42.22 5.73
58 59 2.859273 CTTGCAGCCCTAGTCACGGG 62.859 65.000 0.00 0.00 44.89 5.28
59 60 1.448540 CTTGCAGCCCTAGTCACGG 60.449 63.158 0.00 0.00 0.00 4.94
60 61 2.103042 GCTTGCAGCCCTAGTCACG 61.103 63.158 0.00 0.00 34.48 4.35
61 62 1.003355 TGCTTGCAGCCCTAGTCAC 60.003 57.895 5.82 0.00 41.51 3.67
62 63 1.297689 CTGCTTGCAGCCCTAGTCA 59.702 57.895 9.78 0.00 41.51 3.41
63 64 2.111582 GCTGCTTGCAGCCCTAGTC 61.112 63.158 30.55 7.26 41.51 2.59
64 65 2.045536 GCTGCTTGCAGCCCTAGT 60.046 61.111 30.55 0.00 41.51 2.57
73 74 3.364764 GGATAAATCGAGATGCTGCTTGC 60.365 47.826 0.00 0.00 43.25 4.01
74 75 3.188048 GGGATAAATCGAGATGCTGCTTG 59.812 47.826 0.00 0.00 0.00 4.01
75 76 3.181451 TGGGATAAATCGAGATGCTGCTT 60.181 43.478 0.00 0.00 0.00 3.91
76 77 2.369860 TGGGATAAATCGAGATGCTGCT 59.630 45.455 0.00 0.00 0.00 4.24
77 78 2.481952 GTGGGATAAATCGAGATGCTGC 59.518 50.000 0.00 0.00 0.00 5.25
78 79 2.733552 CGTGGGATAAATCGAGATGCTG 59.266 50.000 0.00 0.00 0.00 4.41
79 80 2.628178 TCGTGGGATAAATCGAGATGCT 59.372 45.455 0.00 0.00 0.00 3.79
80 81 3.026630 TCGTGGGATAAATCGAGATGC 57.973 47.619 0.00 0.00 0.00 3.91
81 82 5.696270 TCATTTCGTGGGATAAATCGAGATG 59.304 40.000 9.49 9.49 42.22 2.90
82 83 5.853936 TCATTTCGTGGGATAAATCGAGAT 58.146 37.500 0.00 0.00 33.98 2.75
83 84 5.270893 TCATTTCGTGGGATAAATCGAGA 57.729 39.130 0.00 0.00 33.98 4.04
84 85 5.984233 TTCATTTCGTGGGATAAATCGAG 57.016 39.130 0.00 0.00 33.98 4.04
85 86 6.935741 ATTTCATTTCGTGGGATAAATCGA 57.064 33.333 0.00 0.00 0.00 3.59
86 87 9.677567 ATTAATTTCATTTCGTGGGATAAATCG 57.322 29.630 0.00 0.00 0.00 3.34
90 91 9.964303 CATGATTAATTTCATTTCGTGGGATAA 57.036 29.630 0.00 0.00 34.09 1.75
91 92 9.130661 ACATGATTAATTTCATTTCGTGGGATA 57.869 29.630 0.00 0.00 34.09 2.59
92 93 8.010733 ACATGATTAATTTCATTTCGTGGGAT 57.989 30.769 0.00 0.00 34.09 3.85
93 94 7.403312 ACATGATTAATTTCATTTCGTGGGA 57.597 32.000 0.00 0.00 34.09 4.37
94 95 7.379529 GCTACATGATTAATTTCATTTCGTGGG 59.620 37.037 0.00 0.00 34.09 4.61
95 96 8.131100 AGCTACATGATTAATTTCATTTCGTGG 58.869 33.333 0.00 0.00 34.09 4.94
96 97 9.162793 GAGCTACATGATTAATTTCATTTCGTG 57.837 33.333 0.00 0.00 34.09 4.35
97 98 8.064222 CGAGCTACATGATTAATTTCATTTCGT 58.936 33.333 0.00 0.00 34.09 3.85
98 99 8.064222 ACGAGCTACATGATTAATTTCATTTCG 58.936 33.333 0.00 0.00 34.09 3.46
99 100 9.162793 CACGAGCTACATGATTAATTTCATTTC 57.837 33.333 0.00 0.00 34.09 2.17
100 101 7.645340 GCACGAGCTACATGATTAATTTCATTT 59.355 33.333 0.00 0.00 34.33 2.32
101 102 7.134815 GCACGAGCTACATGATTAATTTCATT 58.865 34.615 0.00 0.00 34.33 2.57
102 103 6.564686 CGCACGAGCTACATGATTAATTTCAT 60.565 38.462 0.00 0.00 39.10 2.57
103 104 5.276820 CGCACGAGCTACATGATTAATTTCA 60.277 40.000 0.00 0.00 39.10 2.69
104 105 5.051039 TCGCACGAGCTACATGATTAATTTC 60.051 40.000 0.00 0.00 39.10 2.17
105 106 4.808895 TCGCACGAGCTACATGATTAATTT 59.191 37.500 0.00 0.00 39.10 1.82
106 107 4.368315 TCGCACGAGCTACATGATTAATT 58.632 39.130 0.00 0.00 39.10 1.40
107 108 3.977427 TCGCACGAGCTACATGATTAAT 58.023 40.909 0.00 0.00 39.10 1.40
108 109 3.430333 TCGCACGAGCTACATGATTAA 57.570 42.857 0.00 0.00 39.10 1.40
109 110 3.113322 GTTCGCACGAGCTACATGATTA 58.887 45.455 0.00 0.00 39.10 1.75
110 111 1.927174 GTTCGCACGAGCTACATGATT 59.073 47.619 0.00 0.00 39.10 2.57
111 112 1.135112 TGTTCGCACGAGCTACATGAT 60.135 47.619 0.00 0.00 39.10 2.45
112 113 0.242555 TGTTCGCACGAGCTACATGA 59.757 50.000 0.00 0.00 39.10 3.07
113 114 1.280982 ATGTTCGCACGAGCTACATG 58.719 50.000 17.04 0.00 40.13 3.21
114 115 2.010145 AATGTTCGCACGAGCTACAT 57.990 45.000 13.70 13.70 42.01 2.29
115 116 1.790755 AAATGTTCGCACGAGCTACA 58.209 45.000 10.85 10.85 39.10 2.74
116 117 2.875080 AAAATGTTCGCACGAGCTAC 57.125 45.000 8.34 1.81 39.10 3.58
117 118 2.664424 GCAAAAATGTTCGCACGAGCTA 60.664 45.455 8.34 0.00 39.10 3.32
118 119 1.925946 GCAAAAATGTTCGCACGAGCT 60.926 47.619 8.34 0.00 39.10 4.09
119 120 0.430858 GCAAAAATGTTCGCACGAGC 59.569 50.000 0.00 0.00 37.42 5.03
120 121 1.447938 GTGCAAAAATGTTCGCACGAG 59.552 47.619 0.00 0.00 44.54 4.18
121 122 1.471964 GTGCAAAAATGTTCGCACGA 58.528 45.000 0.00 0.00 44.54 4.35
122 123 3.975660 GTGCAAAAATGTTCGCACG 57.024 47.368 0.00 0.00 44.54 5.34
124 125 1.207390 GCTGTGCAAAAATGTTCGCA 58.793 45.000 0.00 0.00 0.00 5.10
125 126 1.207390 TGCTGTGCAAAAATGTTCGC 58.793 45.000 0.00 0.00 34.76 4.70
126 127 4.205334 CAAATGCTGTGCAAAAATGTTCG 58.795 39.130 0.00 0.00 43.62 3.95
127 128 4.529446 CCAAATGCTGTGCAAAAATGTTC 58.471 39.130 0.00 0.00 43.62 3.18
128 129 3.243134 GCCAAATGCTGTGCAAAAATGTT 60.243 39.130 0.00 0.00 43.62 2.71
129 130 2.291190 GCCAAATGCTGTGCAAAAATGT 59.709 40.909 0.00 0.00 43.62 2.71
130 131 2.923643 GCCAAATGCTGTGCAAAAATG 58.076 42.857 0.00 0.00 43.62 2.32
142 143 6.913873 ATGATGTTGATTTTAGCCAAATGC 57.086 33.333 0.00 0.00 35.02 3.56
167 168 9.865321 GATAGCGGACAATACCATTAGTATAAA 57.135 33.333 0.00 0.00 40.98 1.40
168 169 8.472413 GGATAGCGGACAATACCATTAGTATAA 58.528 37.037 0.00 0.00 40.98 0.98
169 170 7.069085 GGGATAGCGGACAATACCATTAGTATA 59.931 40.741 0.00 0.00 40.98 1.47
170 171 6.127140 GGGATAGCGGACAATACCATTAGTAT 60.127 42.308 0.00 0.00 43.85 2.12
171 172 5.186409 GGGATAGCGGACAATACCATTAGTA 59.814 44.000 0.00 0.00 34.76 1.82
172 173 4.020485 GGGATAGCGGACAATACCATTAGT 60.020 45.833 0.00 0.00 0.00 2.24
173 174 4.504858 GGGATAGCGGACAATACCATTAG 58.495 47.826 0.00 0.00 0.00 1.73
174 175 3.056393 CGGGATAGCGGACAATACCATTA 60.056 47.826 0.00 0.00 0.00 1.90
175 176 2.289444 CGGGATAGCGGACAATACCATT 60.289 50.000 0.00 0.00 0.00 3.16
176 177 1.275291 CGGGATAGCGGACAATACCAT 59.725 52.381 0.00 0.00 0.00 3.55
177 178 0.677288 CGGGATAGCGGACAATACCA 59.323 55.000 0.00 0.00 0.00 3.25
178 179 0.677842 ACGGGATAGCGGACAATACC 59.322 55.000 0.00 0.00 0.00 2.73
179 180 1.336609 GGACGGGATAGCGGACAATAC 60.337 57.143 0.00 0.00 0.00 1.89
180 181 0.963962 GGACGGGATAGCGGACAATA 59.036 55.000 0.00 0.00 0.00 1.90
181 182 1.746517 GGACGGGATAGCGGACAAT 59.253 57.895 0.00 0.00 0.00 2.71
182 183 2.777972 CGGACGGGATAGCGGACAA 61.778 63.158 0.00 0.00 0.00 3.18
183 184 3.214123 CGGACGGGATAGCGGACA 61.214 66.667 0.00 0.00 0.00 4.02
184 185 2.288788 AAACGGACGGGATAGCGGAC 62.289 60.000 0.00 0.00 0.00 4.79
185 186 1.606885 AAAACGGACGGGATAGCGGA 61.607 55.000 0.00 0.00 0.00 5.54
186 187 1.153509 AAAACGGACGGGATAGCGG 60.154 57.895 0.00 0.00 0.00 5.52
187 188 0.738412 ACAAAACGGACGGGATAGCG 60.738 55.000 0.00 0.00 0.00 4.26
188 189 1.929169 GTACAAAACGGACGGGATAGC 59.071 52.381 0.00 0.00 0.00 2.97
189 190 2.543641 GGTACAAAACGGACGGGATAG 58.456 52.381 0.00 0.00 0.00 2.08
190 191 1.206849 GGGTACAAAACGGACGGGATA 59.793 52.381 0.00 0.00 0.00 2.59
191 192 0.036105 GGGTACAAAACGGACGGGAT 60.036 55.000 0.00 0.00 0.00 3.85
192 193 1.120795 AGGGTACAAAACGGACGGGA 61.121 55.000 0.00 0.00 0.00 5.14
193 194 0.607620 TAGGGTACAAAACGGACGGG 59.392 55.000 0.00 0.00 0.00 5.28
194 195 1.273327 AGTAGGGTACAAAACGGACGG 59.727 52.381 0.00 0.00 0.00 4.79
195 196 2.030007 TGAGTAGGGTACAAAACGGACG 60.030 50.000 0.00 0.00 0.00 4.79
196 197 3.665745 TGAGTAGGGTACAAAACGGAC 57.334 47.619 0.00 0.00 0.00 4.79
197 198 4.895668 ATTGAGTAGGGTACAAAACGGA 57.104 40.909 0.00 0.00 0.00 4.69
198 199 6.457799 GCATTATTGAGTAGGGTACAAAACGG 60.458 42.308 0.00 0.00 0.00 4.44
199 200 6.315393 AGCATTATTGAGTAGGGTACAAAACG 59.685 38.462 0.00 0.00 0.00 3.60
200 201 7.625828 AGCATTATTGAGTAGGGTACAAAAC 57.374 36.000 0.00 0.00 0.00 2.43
201 202 9.742144 TTTAGCATTATTGAGTAGGGTACAAAA 57.258 29.630 0.00 0.00 0.00 2.44
202 203 9.914834 ATTTAGCATTATTGAGTAGGGTACAAA 57.085 29.630 0.00 0.00 0.00 2.83
220 221 8.548721 GCGTGTAACTCTTTGTATATTTAGCAT 58.451 33.333 0.00 0.00 31.75 3.79
221 222 7.546316 TGCGTGTAACTCTTTGTATATTTAGCA 59.454 33.333 0.00 0.00 31.75 3.49
222 223 7.902032 TGCGTGTAACTCTTTGTATATTTAGC 58.098 34.615 0.00 0.00 31.75 3.09
227 228 9.373603 TGTAATTGCGTGTAACTCTTTGTATAT 57.626 29.630 0.00 0.00 31.75 0.86
228 229 8.649841 GTGTAATTGCGTGTAACTCTTTGTATA 58.350 33.333 0.00 0.00 31.75 1.47
229 230 7.171848 TGTGTAATTGCGTGTAACTCTTTGTAT 59.828 33.333 0.00 0.00 31.75 2.29
230 231 6.479331 TGTGTAATTGCGTGTAACTCTTTGTA 59.521 34.615 0.00 0.00 31.75 2.41
231 232 5.294799 TGTGTAATTGCGTGTAACTCTTTGT 59.705 36.000 0.00 0.00 31.75 2.83
232 233 5.619607 GTGTGTAATTGCGTGTAACTCTTTG 59.380 40.000 0.00 0.00 31.75 2.77
233 234 5.277634 GGTGTGTAATTGCGTGTAACTCTTT 60.278 40.000 0.00 0.00 31.75 2.52
234 235 4.212636 GGTGTGTAATTGCGTGTAACTCTT 59.787 41.667 0.00 0.00 31.75 2.85
235 236 3.744426 GGTGTGTAATTGCGTGTAACTCT 59.256 43.478 0.00 0.00 31.75 3.24
236 237 3.422603 CGGTGTGTAATTGCGTGTAACTC 60.423 47.826 0.00 0.00 31.75 3.01
237 238 2.477375 CGGTGTGTAATTGCGTGTAACT 59.523 45.455 0.00 0.00 31.75 2.24
238 239 2.475864 TCGGTGTGTAATTGCGTGTAAC 59.524 45.455 0.00 0.00 0.00 2.50
239 240 2.475864 GTCGGTGTGTAATTGCGTGTAA 59.524 45.455 0.00 0.00 0.00 2.41
240 241 2.060284 GTCGGTGTGTAATTGCGTGTA 58.940 47.619 0.00 0.00 0.00 2.90
241 242 0.863144 GTCGGTGTGTAATTGCGTGT 59.137 50.000 0.00 0.00 0.00 4.49
242 243 1.144969 AGTCGGTGTGTAATTGCGTG 58.855 50.000 0.00 0.00 0.00 5.34
243 244 2.229543 TCTAGTCGGTGTGTAATTGCGT 59.770 45.455 0.00 0.00 0.00 5.24
244 245 2.871133 TCTAGTCGGTGTGTAATTGCG 58.129 47.619 0.00 0.00 0.00 4.85
245 246 5.796350 AAATCTAGTCGGTGTGTAATTGC 57.204 39.130 0.00 0.00 0.00 3.56
268 269 9.959749 GTTTGTGATTGGTTAGTAGATGAAAAA 57.040 29.630 0.00 0.00 0.00 1.94
269 270 9.349713 AGTTTGTGATTGGTTAGTAGATGAAAA 57.650 29.630 0.00 0.00 0.00 2.29
270 271 8.918202 AGTTTGTGATTGGTTAGTAGATGAAA 57.082 30.769 0.00 0.00 0.00 2.69
271 272 8.783093 CAAGTTTGTGATTGGTTAGTAGATGAA 58.217 33.333 0.00 0.00 0.00 2.57
272 273 7.936847 ACAAGTTTGTGATTGGTTAGTAGATGA 59.063 33.333 0.00 0.00 40.49 2.92
273 274 8.099364 ACAAGTTTGTGATTGGTTAGTAGATG 57.901 34.615 0.00 0.00 40.49 2.90
274 275 8.157476 AGACAAGTTTGTGATTGGTTAGTAGAT 58.843 33.333 1.62 0.00 42.43 1.98
275 276 7.506114 AGACAAGTTTGTGATTGGTTAGTAGA 58.494 34.615 1.62 0.00 42.43 2.59
276 277 7.095187 GGAGACAAGTTTGTGATTGGTTAGTAG 60.095 40.741 1.62 0.00 42.43 2.57
277 278 6.708949 GGAGACAAGTTTGTGATTGGTTAGTA 59.291 38.462 1.62 0.00 42.43 1.82
278 279 5.531287 GGAGACAAGTTTGTGATTGGTTAGT 59.469 40.000 1.62 0.00 42.43 2.24
279 280 5.048713 GGGAGACAAGTTTGTGATTGGTTAG 60.049 44.000 1.62 0.00 42.43 2.34
280 281 4.825085 GGGAGACAAGTTTGTGATTGGTTA 59.175 41.667 1.62 0.00 42.43 2.85
281 282 3.636764 GGGAGACAAGTTTGTGATTGGTT 59.363 43.478 1.62 0.00 42.43 3.67
282 283 3.117512 AGGGAGACAAGTTTGTGATTGGT 60.118 43.478 1.62 0.00 42.43 3.67
283 284 3.490348 AGGGAGACAAGTTTGTGATTGG 58.510 45.455 1.62 0.00 42.43 3.16
284 285 4.214971 CAGAGGGAGACAAGTTTGTGATTG 59.785 45.833 1.62 0.00 42.43 2.67
285 286 4.103153 TCAGAGGGAGACAAGTTTGTGATT 59.897 41.667 1.62 0.00 42.43 2.57
286 287 3.648067 TCAGAGGGAGACAAGTTTGTGAT 59.352 43.478 1.62 0.00 42.43 3.06
287 288 3.038280 TCAGAGGGAGACAAGTTTGTGA 58.962 45.455 1.62 0.00 42.43 3.58
288 289 3.475566 TCAGAGGGAGACAAGTTTGTG 57.524 47.619 1.62 0.00 42.43 3.33
289 290 4.713792 AATCAGAGGGAGACAAGTTTGT 57.286 40.909 0.00 0.00 45.65 2.83
290 291 6.396829 AAAAATCAGAGGGAGACAAGTTTG 57.603 37.500 0.00 0.00 0.00 2.93
291 292 6.717084 CCTAAAAATCAGAGGGAGACAAGTTT 59.283 38.462 0.00 0.00 0.00 2.66
292 293 6.241645 CCTAAAAATCAGAGGGAGACAAGTT 58.758 40.000 0.00 0.00 0.00 2.66
293 294 5.810095 CCTAAAAATCAGAGGGAGACAAGT 58.190 41.667 0.00 0.00 0.00 3.16
302 303 2.580783 TCCACCCCCTAAAAATCAGAGG 59.419 50.000 0.00 0.00 0.00 3.69
303 304 3.621558 GTCCACCCCCTAAAAATCAGAG 58.378 50.000 0.00 0.00 0.00 3.35
304 305 2.310647 GGTCCACCCCCTAAAAATCAGA 59.689 50.000 0.00 0.00 0.00 3.27
305 306 2.735151 GGTCCACCCCCTAAAAATCAG 58.265 52.381 0.00 0.00 0.00 2.90
306 307 1.004979 CGGTCCACCCCCTAAAAATCA 59.995 52.381 0.00 0.00 0.00 2.57
307 308 1.758936 CGGTCCACCCCCTAAAAATC 58.241 55.000 0.00 0.00 0.00 2.17
308 309 0.323999 GCGGTCCACCCCCTAAAAAT 60.324 55.000 0.00 0.00 0.00 1.82
309 310 1.075305 GCGGTCCACCCCCTAAAAA 59.925 57.895 0.00 0.00 0.00 1.94
310 311 2.758434 GCGGTCCACCCCCTAAAA 59.242 61.111 0.00 0.00 0.00 1.52
311 312 3.332385 GGCGGTCCACCCCCTAAA 61.332 66.667 0.00 0.00 0.00 1.85
312 313 3.876255 AAGGCGGTCCACCCCCTAA 62.876 63.158 2.18 0.00 33.98 2.69
313 314 4.342086 AAGGCGGTCCACCCCCTA 62.342 66.667 2.18 0.00 33.98 3.53
318 319 2.781431 AAATGGGAAGGCGGTCCACC 62.781 60.000 11.67 0.00 39.70 4.61
319 320 0.034863 TAAATGGGAAGGCGGTCCAC 60.035 55.000 11.67 3.13 39.70 4.02
320 321 0.923358 ATAAATGGGAAGGCGGTCCA 59.077 50.000 11.67 5.54 39.70 4.02
321 322 1.681264 CAATAAATGGGAAGGCGGTCC 59.319 52.381 1.93 1.93 36.90 4.46
322 323 2.650322 TCAATAAATGGGAAGGCGGTC 58.350 47.619 0.00 0.00 0.00 4.79
323 324 2.818751 TCAATAAATGGGAAGGCGGT 57.181 45.000 0.00 0.00 0.00 5.68
324 325 3.221771 TGATCAATAAATGGGAAGGCGG 58.778 45.455 0.00 0.00 0.00 6.13
325 326 4.916983 TTGATCAATAAATGGGAAGGCG 57.083 40.909 3.38 0.00 0.00 5.52
326 327 9.783081 ATTTAATTGATCAATAAATGGGAAGGC 57.217 29.630 21.00 0.00 0.00 4.35
360 361 9.543783 ACAAACAAGTTACAACCTTTTACAAAA 57.456 25.926 0.00 0.00 0.00 2.44
362 363 9.623350 GTACAAACAAGTTACAACCTTTTACAA 57.377 29.630 0.00 0.00 0.00 2.41
363 364 7.961827 CGTACAAACAAGTTACAACCTTTTACA 59.038 33.333 0.00 0.00 0.00 2.41
364 365 7.962373 ACGTACAAACAAGTTACAACCTTTTAC 59.038 33.333 0.00 0.00 0.00 2.01
365 366 7.961827 CACGTACAAACAAGTTACAACCTTTTA 59.038 33.333 0.00 0.00 0.00 1.52
366 367 6.802834 CACGTACAAACAAGTTACAACCTTTT 59.197 34.615 0.00 0.00 0.00 2.27
367 368 6.072563 ACACGTACAAACAAGTTACAACCTTT 60.073 34.615 0.00 0.00 0.00 3.11
368 369 5.412286 ACACGTACAAACAAGTTACAACCTT 59.588 36.000 0.00 0.00 0.00 3.50
369 370 4.937015 ACACGTACAAACAAGTTACAACCT 59.063 37.500 0.00 0.00 0.00 3.50
370 371 5.220557 ACACGTACAAACAAGTTACAACC 57.779 39.130 0.00 0.00 0.00 3.77
371 372 5.898061 GCTACACGTACAAACAAGTTACAAC 59.102 40.000 0.00 0.00 0.00 3.32
372 373 5.579904 TGCTACACGTACAAACAAGTTACAA 59.420 36.000 0.00 0.00 0.00 2.41
373 374 5.107824 TGCTACACGTACAAACAAGTTACA 58.892 37.500 0.00 0.00 0.00 2.41
374 375 5.640218 TGCTACACGTACAAACAAGTTAC 57.360 39.130 0.00 0.00 0.00 2.50
375 376 6.847956 AATGCTACACGTACAAACAAGTTA 57.152 33.333 0.00 0.00 0.00 2.24
376 377 5.744666 AATGCTACACGTACAAACAAGTT 57.255 34.783 0.00 0.00 0.00 2.66
377 378 5.987347 AGTAATGCTACACGTACAAACAAGT 59.013 36.000 0.00 0.00 0.00 3.16
378 379 6.462073 AGTAATGCTACACGTACAAACAAG 57.538 37.500 0.00 0.00 0.00 3.16
379 380 5.117440 CGAGTAATGCTACACGTACAAACAA 59.883 40.000 0.00 0.00 37.35 2.83
380 381 4.618067 CGAGTAATGCTACACGTACAAACA 59.382 41.667 0.00 0.00 37.35 2.83
381 382 5.109815 CGAGTAATGCTACACGTACAAAC 57.890 43.478 0.00 0.00 37.35 2.93
388 389 2.357009 AGGGTACGAGTAATGCTACACG 59.643 50.000 0.00 2.26 44.60 4.49
389 390 4.261363 GGTAGGGTACGAGTAATGCTACAC 60.261 50.000 0.00 0.00 0.00 2.90
390 391 3.885297 GGTAGGGTACGAGTAATGCTACA 59.115 47.826 0.00 0.00 0.00 2.74
391 392 3.254411 GGGTAGGGTACGAGTAATGCTAC 59.746 52.174 0.00 0.00 0.00 3.58
392 393 3.490348 GGGTAGGGTACGAGTAATGCTA 58.510 50.000 0.00 0.00 0.00 3.49
393 394 2.314246 GGGTAGGGTACGAGTAATGCT 58.686 52.381 0.00 0.00 0.00 3.79
394 395 1.342496 GGGGTAGGGTACGAGTAATGC 59.658 57.143 0.00 0.00 0.00 3.56
395 396 2.626743 CAGGGGTAGGGTACGAGTAATG 59.373 54.545 0.00 0.00 0.00 1.90
396 397 2.515429 TCAGGGGTAGGGTACGAGTAAT 59.485 50.000 0.00 0.00 0.00 1.89
397 398 1.922447 TCAGGGGTAGGGTACGAGTAA 59.078 52.381 0.00 0.00 0.00 2.24
398 399 1.212935 GTCAGGGGTAGGGTACGAGTA 59.787 57.143 0.00 0.00 0.00 2.59
399 400 0.033699 GTCAGGGGTAGGGTACGAGT 60.034 60.000 0.00 0.00 0.00 4.18
400 401 0.258194 AGTCAGGGGTAGGGTACGAG 59.742 60.000 0.00 0.00 0.00 4.18
401 402 0.257039 GAGTCAGGGGTAGGGTACGA 59.743 60.000 0.00 0.00 0.00 3.43
402 403 1.099879 CGAGTCAGGGGTAGGGTACG 61.100 65.000 0.00 0.00 0.00 3.67
403 404 0.033699 ACGAGTCAGGGGTAGGGTAC 60.034 60.000 0.00 0.00 0.00 3.34
404 405 1.595311 TACGAGTCAGGGGTAGGGTA 58.405 55.000 0.00 0.00 0.00 3.69
405 406 0.932211 ATACGAGTCAGGGGTAGGGT 59.068 55.000 0.00 0.00 0.00 4.34
406 407 1.962100 GAATACGAGTCAGGGGTAGGG 59.038 57.143 0.00 0.00 0.00 3.53
407 408 1.962100 GGAATACGAGTCAGGGGTAGG 59.038 57.143 0.00 0.00 0.00 3.18
408 409 2.623889 CTGGAATACGAGTCAGGGGTAG 59.376 54.545 0.00 0.00 0.00 3.18
409 410 2.024655 ACTGGAATACGAGTCAGGGGTA 60.025 50.000 0.00 0.00 29.41 3.69
410 411 1.273098 ACTGGAATACGAGTCAGGGGT 60.273 52.381 0.00 0.00 29.41 4.95
411 412 1.486211 ACTGGAATACGAGTCAGGGG 58.514 55.000 0.00 0.00 29.41 4.79
412 413 2.761208 AGAACTGGAATACGAGTCAGGG 59.239 50.000 0.00 0.00 34.16 4.45
413 414 4.082190 TCAAGAACTGGAATACGAGTCAGG 60.082 45.833 0.00 0.00 34.16 3.86
414 415 5.060662 TCAAGAACTGGAATACGAGTCAG 57.939 43.478 0.00 0.00 34.16 3.51
415 416 4.618460 GCTCAAGAACTGGAATACGAGTCA 60.618 45.833 0.00 0.00 34.16 3.41
416 417 3.860536 GCTCAAGAACTGGAATACGAGTC 59.139 47.826 0.00 0.00 34.16 3.36
417 418 3.511934 AGCTCAAGAACTGGAATACGAGT 59.488 43.478 0.00 0.00 36.68 4.18
418 419 3.862267 CAGCTCAAGAACTGGAATACGAG 59.138 47.826 0.00 0.00 0.00 4.18
419 420 3.849911 CAGCTCAAGAACTGGAATACGA 58.150 45.455 0.00 0.00 0.00 3.43
427 428 1.517242 GACCACCAGCTCAAGAACTG 58.483 55.000 0.00 0.00 0.00 3.16
428 429 0.034059 CGACCACCAGCTCAAGAACT 59.966 55.000 0.00 0.00 0.00 3.01
429 430 0.249911 ACGACCACCAGCTCAAGAAC 60.250 55.000 0.00 0.00 0.00 3.01
430 431 0.249868 CACGACCACCAGCTCAAGAA 60.250 55.000 0.00 0.00 0.00 2.52
431 432 1.367471 CACGACCACCAGCTCAAGA 59.633 57.895 0.00 0.00 0.00 3.02
432 433 2.320587 GCACGACCACCAGCTCAAG 61.321 63.158 0.00 0.00 0.00 3.02
433 434 2.280797 GCACGACCACCAGCTCAA 60.281 61.111 0.00 0.00 0.00 3.02
434 435 4.314440 GGCACGACCACCAGCTCA 62.314 66.667 0.00 0.00 38.86 4.26
435 436 4.314440 TGGCACGACCACCAGCTC 62.314 66.667 0.00 0.00 46.36 4.09
463 464 0.108756 AGAGCGAGGAACTTAACCGC 60.109 55.000 0.00 0.00 41.55 5.68
464 465 1.469423 GGAGAGCGAGGAACTTAACCG 60.469 57.143 0.00 0.00 41.55 4.44
546 547 1.166531 GCTGCTGGTGTTCGGTTCTT 61.167 55.000 0.00 0.00 0.00 2.52
551 552 2.743928 GAGGCTGCTGGTGTTCGG 60.744 66.667 0.00 0.00 0.00 4.30
552 553 2.031012 TGAGGCTGCTGGTGTTCG 59.969 61.111 0.00 0.00 0.00 3.95
553 554 1.968540 GGTGAGGCTGCTGGTGTTC 60.969 63.158 0.00 0.00 0.00 3.18
554 555 2.113986 GGTGAGGCTGCTGGTGTT 59.886 61.111 0.00 0.00 0.00 3.32
555 556 4.320456 CGGTGAGGCTGCTGGTGT 62.320 66.667 0.00 0.00 0.00 4.16
597 598 0.248866 CTGTTTTTGGGTGGACGTGC 60.249 55.000 0.00 0.00 0.00 5.34
668 675 4.368808 CGGTGCTGCGTCGTTTGG 62.369 66.667 6.33 0.00 0.00 3.28
898 924 1.600076 AACACAGCAGCAGCAGGAG 60.600 57.895 3.17 0.00 45.49 3.69
899 925 1.895231 CAACACAGCAGCAGCAGGA 60.895 57.895 3.17 0.00 45.49 3.86
979 1011 4.393778 GGAGACGGGACAGGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
1017 1049 4.208686 GCGAAGGAGACGGCGGAT 62.209 66.667 13.24 0.00 33.39 4.18
1080 1112 2.944954 TGAGGGGACGGAGGGAGA 60.945 66.667 0.00 0.00 0.00 3.71
1132 1165 2.750237 ATTCTGAAACCCCGCCGC 60.750 61.111 0.00 0.00 0.00 6.53
1134 1167 0.035439 TCAGATTCTGAAACCCCGCC 60.035 55.000 13.96 0.00 37.57 6.13
1135 1168 1.339151 ACTCAGATTCTGAAACCCCGC 60.339 52.381 16.79 0.00 40.18 6.13
1153 1186 1.148310 CACCGAATCTCGCAAACACT 58.852 50.000 0.00 0.00 38.82 3.55
1154 1187 0.452784 GCACCGAATCTCGCAAACAC 60.453 55.000 0.00 0.00 38.82 3.32
1155 1188 1.866237 GCACCGAATCTCGCAAACA 59.134 52.632 0.00 0.00 38.82 2.83
1156 1189 1.225745 CGCACCGAATCTCGCAAAC 60.226 57.895 0.00 0.00 38.82 2.93
1157 1190 2.387445 CCGCACCGAATCTCGCAAA 61.387 57.895 0.00 0.00 38.82 3.68
1158 1191 2.572095 ATCCGCACCGAATCTCGCAA 62.572 55.000 0.00 0.00 38.82 4.85
1159 1192 2.954020 GATCCGCACCGAATCTCGCA 62.954 60.000 0.00 0.00 38.82 5.10
1160 1193 2.279517 ATCCGCACCGAATCTCGC 60.280 61.111 0.00 0.00 38.82 5.03
1161 1194 1.661821 GGATCCGCACCGAATCTCG 60.662 63.158 0.00 0.00 40.07 4.04
1218 1713 4.778143 GAATCGGCGGCACCTGGT 62.778 66.667 10.53 0.00 35.61 4.00
1236 1731 5.680229 ACGTTTCGACTGAATATAAGCTACG 59.320 40.000 0.00 0.00 33.20 3.51
1244 1739 3.176708 CACGGACGTTTCGACTGAATAT 58.823 45.455 16.94 0.00 33.20 1.28
1247 1742 0.595567 CCACGGACGTTTCGACTGAA 60.596 55.000 16.94 0.00 32.88 3.02
1248 1743 1.008194 CCACGGACGTTTCGACTGA 60.008 57.895 16.94 0.00 32.88 3.41
1250 1745 1.285023 CTCCACGGACGTTTCGACT 59.715 57.895 16.94 0.00 0.00 4.18
1268 1763 1.212616 CAGATCCAATCGAGCCGAAC 58.787 55.000 1.44 0.00 39.99 3.95
1271 1768 1.958205 GCCAGATCCAATCGAGCCG 60.958 63.158 0.00 0.00 0.00 5.52
1298 1800 1.521681 GCGCGAAACTCAGCCCTAT 60.522 57.895 12.10 0.00 0.00 2.57
1363 1870 6.850823 CACATGCGGTTATAAATGTATGTCAC 59.149 38.462 14.77 0.00 35.85 3.67
1367 1874 6.017523 TGGTCACATGCGGTTATAAATGTATG 60.018 38.462 11.99 11.99 32.15 2.39
1369 1876 5.429130 TGGTCACATGCGGTTATAAATGTA 58.571 37.500 0.00 0.00 32.15 2.29
1371 1878 4.891627 TGGTCACATGCGGTTATAAATG 57.108 40.909 0.00 0.00 0.00 2.32
1372 1879 7.759489 AATATGGTCACATGCGGTTATAAAT 57.241 32.000 0.00 0.00 37.97 1.40
1373 1880 7.067615 ACAAATATGGTCACATGCGGTTATAAA 59.932 33.333 0.00 0.00 37.97 1.40
1374 1881 6.544197 ACAAATATGGTCACATGCGGTTATAA 59.456 34.615 0.00 0.00 37.97 0.98
1396 1903 1.573932 CGATCCAACAAGCGCACAA 59.426 52.632 11.47 0.00 0.00 3.33
1399 1906 1.078497 ATCCGATCCAACAAGCGCA 60.078 52.632 11.47 0.00 0.00 6.09
1401 1908 1.086696 AACATCCGATCCAACAAGCG 58.913 50.000 0.00 0.00 0.00 4.68
1405 1912 1.352687 TCCCAAACATCCGATCCAACA 59.647 47.619 0.00 0.00 0.00 3.33
1547 2055 2.677836 ACTTTACATGCACCATACAGCG 59.322 45.455 0.00 0.00 0.00 5.18
1573 2081 7.850982 CGTGCCATTACAGATTTATGAGTAAAC 59.149 37.037 0.00 0.00 32.91 2.01
1576 2084 5.465390 GCGTGCCATTACAGATTTATGAGTA 59.535 40.000 0.00 0.00 0.00 2.59
1578 2086 4.319766 GGCGTGCCATTACAGATTTATGAG 60.320 45.833 5.89 0.00 35.81 2.90
1616 2124 2.203401 TGAAGCAATGCAAACAACAGC 58.797 42.857 8.35 0.00 0.00 4.40
1682 2190 4.105697 ACCTAAACCTGGGAATCTTTCACA 59.894 41.667 0.00 0.00 41.69 3.58
1780 2288 4.130118 AGCTTAAAGGCGGAATCATGTAG 58.870 43.478 0.00 0.00 37.29 2.74
1834 2342 5.455872 TCAGTTTAAACAACAACCCCCATA 58.544 37.500 20.06 0.00 0.00 2.74
1837 2345 4.627058 CATCAGTTTAAACAACAACCCCC 58.373 43.478 20.06 0.00 0.00 5.40
1848 2356 7.013178 TCTCATTGAACACAGCATCAGTTTAAA 59.987 33.333 0.00 0.00 0.00 1.52
1881 2391 7.391148 AACGTTCACAGCCTGAATTAAATAT 57.609 32.000 0.00 0.00 41.10 1.28
1884 2394 5.298276 AGAAACGTTCACAGCCTGAATTAAA 59.702 36.000 0.00 0.00 41.10 1.52
1895 2405 6.645415 ACATAACTCCTAAGAAACGTTCACAG 59.355 38.462 0.00 0.00 0.00 3.66
1903 2413 6.166982 AGTGCTGACATAACTCCTAAGAAAC 58.833 40.000 0.00 0.00 0.00 2.78
2121 2653 5.812642 GTCATGTAGGTTGGTTGACTATCAG 59.187 44.000 0.00 0.00 35.09 2.90
2140 2672 4.327898 GCCACATTGCATAAAACTGTCATG 59.672 41.667 0.00 0.00 0.00 3.07
2141 2673 4.021280 TGCCACATTGCATAAAACTGTCAT 60.021 37.500 0.00 0.00 36.04 3.06
2184 2716 5.007682 GTGAACTAGGGAATAGCAAACCAA 58.992 41.667 0.00 0.00 34.56 3.67
2221 2753 2.347661 CGCCGAAGATGATTTCGTAAGC 60.348 50.000 7.29 3.43 46.31 3.09
2235 2767 1.083489 TTGCCTGTAAATCGCCGAAG 58.917 50.000 0.00 0.00 0.00 3.79
2294 2826 3.531538 TGAAGACGGAAGGATACATTGC 58.468 45.455 0.00 0.00 41.41 3.56
2341 2873 4.290093 AGGATGATACTTACAGCACAGGA 58.710 43.478 0.00 0.00 0.00 3.86
2342 2874 4.679373 AGGATGATACTTACAGCACAGG 57.321 45.455 0.00 0.00 0.00 4.00
2556 3088 9.750125 TTCTATATGATGCAGTAGTAGTTTGTG 57.250 33.333 0.00 0.00 0.00 3.33
2653 3198 5.614760 CACGATACCAAAAAGAAACTACCG 58.385 41.667 0.00 0.00 0.00 4.02
2706 3251 3.629087 AGACTAGGAGGCGCTTACTTAA 58.371 45.455 10.55 0.00 0.00 1.85
2756 3301 9.734984 CCTATTAAATCGGAATTACAGGGTTAT 57.265 33.333 5.36 0.00 0.00 1.89
2823 3368 1.753073 AGCAACAAAGCCCTATGATGC 59.247 47.619 0.46 0.46 43.28 3.91
2845 3390 6.543831 ACACCAATATGAAGCAGTTAGAATCC 59.456 38.462 0.00 0.00 0.00 3.01
2946 3491 2.329379 GAGCCAGAAACTACAGTGTCG 58.671 52.381 0.00 0.00 37.36 4.35
3088 3637 6.970043 TGATGCACTGTTACAAACTTAACAAC 59.030 34.615 0.00 0.00 40.59 3.32
3125 3674 3.328535 AACTATGGCCAAATAAGGGGG 57.671 47.619 10.96 0.00 0.00 5.40
3158 3714 6.885735 ACAGAAACTATTTGTTGTTGTTGC 57.114 33.333 0.00 0.00 39.13 4.17
3185 3751 6.346359 GCGAGTCGTACTCACAAAATACTTTT 60.346 38.462 15.08 0.00 45.30 2.27
3186 3752 5.118203 GCGAGTCGTACTCACAAAATACTTT 59.882 40.000 15.08 0.00 45.30 2.66
3200 3766 5.974751 ACTTACTAGTACTAGCGAGTCGTAC 59.025 44.000 26.54 8.55 37.10 3.67
3209 3775 5.420104 TGGGTTCCAACTTACTAGTACTAGC 59.580 44.000 26.54 8.65 36.66 3.42
3210 3776 7.472334 TTGGGTTCCAACTTACTAGTACTAG 57.528 40.000 25.30 25.30 38.75 2.57
3211 3777 6.071165 GCTTGGGTTCCAACTTACTAGTACTA 60.071 42.308 0.91 1.89 38.75 1.82
3212 3778 5.279859 GCTTGGGTTCCAACTTACTAGTACT 60.280 44.000 0.91 0.00 38.75 2.73
3213 3779 4.934001 GCTTGGGTTCCAACTTACTAGTAC 59.066 45.833 0.91 0.00 38.75 2.73
3214 3780 4.019950 GGCTTGGGTTCCAACTTACTAGTA 60.020 45.833 0.00 0.00 38.75 1.82
3296 3864 6.218019 TCAAAATGAAGAAGGCAGAACAATG 58.782 36.000 0.00 0.00 0.00 2.82
3297 3865 6.409524 TCAAAATGAAGAAGGCAGAACAAT 57.590 33.333 0.00 0.00 0.00 2.71
3305 3873 4.156739 ACGAAGGATCAAAATGAAGAAGGC 59.843 41.667 0.00 0.00 0.00 4.35
3307 3875 6.457528 GGCTACGAAGGATCAAAATGAAGAAG 60.458 42.308 0.00 0.00 0.00 2.85
3416 3985 7.445096 TGAGCAATCTCAAACTGAAAAGTATGA 59.555 33.333 0.00 0.00 45.69 2.15
3440 4009 6.099269 ACAAAGTTTCACTAGTTAGGACCTGA 59.901 38.462 3.53 0.00 0.00 3.86
3624 4193 0.676782 AACGATTGCAGTGGGTAGCC 60.677 55.000 3.29 3.29 0.00 3.93
3662 4232 6.071463 CACAGTAAAATCTAGCACGTCAAAC 58.929 40.000 0.00 0.00 0.00 2.93
3818 4390 3.054361 AGGGGTAGTTAATTCCAGCACAG 60.054 47.826 0.00 0.00 0.00 3.66
3850 4422 5.784578 AAACAAGGTGTAGATTTGAACCC 57.215 39.130 0.00 0.00 32.85 4.11
3871 4443 3.334583 AACAATCGGCTGCTCTAGAAA 57.665 42.857 0.00 0.00 0.00 2.52
3882 4454 6.090223 CCAAAAACAACCTATAAACAATCGGC 59.910 38.462 0.00 0.00 0.00 5.54
3883 4455 7.149307 ACCAAAAACAACCTATAAACAATCGG 58.851 34.615 0.00 0.00 0.00 4.18
3944 4530 2.593346 TTGCAGCGGTCAAAATGTTT 57.407 40.000 0.00 0.00 0.00 2.83
3946 4532 1.612950 TGATTGCAGCGGTCAAAATGT 59.387 42.857 4.14 0.00 0.00 2.71
3974 4560 5.196809 GCACGAGCAGCAGATATAAATAC 57.803 43.478 0.00 0.00 41.58 1.89
3994 4580 4.314121 ACAAAACAGCAGAAAAGTTTGCA 58.686 34.783 0.00 0.00 42.67 4.08
4020 4606 2.643551 CAGGGGAGTGCGTTTCATTAT 58.356 47.619 0.00 0.00 0.00 1.28
4021 4607 1.339631 CCAGGGGAGTGCGTTTCATTA 60.340 52.381 0.00 0.00 0.00 1.90
4025 4611 3.056328 GCCAGGGGAGTGCGTTTC 61.056 66.667 0.00 0.00 0.00 2.78
4037 4684 1.114722 TTCCCAAAGCAAGTGCCAGG 61.115 55.000 0.00 0.00 43.38 4.45
4038 4685 0.752054 TTTCCCAAAGCAAGTGCCAG 59.248 50.000 0.00 0.00 43.38 4.85
4039 4686 0.752054 CTTTCCCAAAGCAAGTGCCA 59.248 50.000 0.00 0.00 43.38 4.92
4040 4687 0.033920 CCTTTCCCAAAGCAAGTGCC 59.966 55.000 0.00 0.00 43.38 5.01
4041 4688 0.752658 ACCTTTCCCAAAGCAAGTGC 59.247 50.000 0.00 0.00 42.49 4.40
4044 4691 2.695147 ACAGAACCTTTCCCAAAGCAAG 59.305 45.455 0.00 0.00 37.18 4.01
4052 4759 0.536460 TGCGGAACAGAACCTTTCCC 60.536 55.000 0.00 0.00 38.50 3.97
4064 4771 0.876399 ACGGTAACCAAATGCGGAAC 59.124 50.000 0.00 0.00 0.00 3.62
4065 4772 2.469274 TACGGTAACCAAATGCGGAA 57.531 45.000 0.00 0.00 0.00 4.30
4066 4773 2.093606 TCATACGGTAACCAAATGCGGA 60.094 45.455 0.00 0.00 0.00 5.54
4068 4775 4.201871 ACATTCATACGGTAACCAAATGCG 60.202 41.667 11.66 0.00 0.00 4.73
4101 4868 1.205657 GCGATTAGGTTCGAATGCGA 58.794 50.000 0.00 0.00 46.33 5.10
4119 4886 2.157085 GTCACTGCTAGTTTAACCACGC 59.843 50.000 0.00 0.00 0.00 5.34
4150 4917 4.829492 CCAAAGATTCCCCATAATGAGTCC 59.171 45.833 0.00 0.00 0.00 3.85
4179 4946 2.764010 AGTGTGTGGATAATACGGCTGA 59.236 45.455 0.00 0.00 0.00 4.26
4197 4964 1.741706 CCAGGCTGCTTGTGATTAGTG 59.258 52.381 9.56 0.00 0.00 2.74
4267 5037 8.708742 GCCCAAACTAGCAAAATTTAAAACTAG 58.291 33.333 11.93 11.93 34.61 2.57
4285 5059 1.678970 GAAGGATGCCGCCCAAACT 60.679 57.895 0.00 0.00 0.00 2.66
4300 5078 4.641094 CGGGGAGCATATACTACCTAGAAG 59.359 50.000 4.09 0.00 40.93 2.85
4313 5091 2.200370 ATCGGGTCGGGGAGCATA 59.800 61.111 0.00 0.00 0.00 3.14
4365 5160 2.503375 CGTCGTCGTTTCTCCCGG 60.503 66.667 0.00 0.00 0.00 5.73
4371 5166 2.458629 GTGCGTCGTCGTCGTTTC 59.541 61.111 13.09 0.00 39.49 2.78
4429 5234 5.027099 CGGCATCTTTTTGTTTTGTTTTGG 58.973 37.500 0.00 0.00 0.00 3.28
4471 5277 4.368315 ACGAAATAATACTCATGCTCGCA 58.632 39.130 0.00 0.00 0.00 5.10
4477 5283 6.920210 TCTGCAGAGACGAAATAATACTCATG 59.080 38.462 13.74 0.00 0.00 3.07
4478 5284 7.043961 TCTGCAGAGACGAAATAATACTCAT 57.956 36.000 13.74 0.00 0.00 2.90
4479 5285 6.451064 TCTGCAGAGACGAAATAATACTCA 57.549 37.500 13.74 0.00 0.00 3.41
4480 5286 6.920758 ACATCTGCAGAGACGAAATAATACTC 59.079 38.462 22.96 0.00 0.00 2.59
4482 5288 6.697455 TCACATCTGCAGAGACGAAATAATAC 59.303 38.462 22.96 0.00 0.00 1.89
4547 5353 1.250328 CAACAGAGAAATGGCTGGCA 58.750 50.000 6.31 6.31 36.47 4.92
4548 5354 0.108945 GCAACAGAGAAATGGCTGGC 60.109 55.000 0.00 0.00 36.47 4.85
4549 5355 0.529378 GGCAACAGAGAAATGGCTGG 59.471 55.000 0.00 0.00 36.47 4.85
4550 5356 1.250328 TGGCAACAGAGAAATGGCTG 58.750 50.000 0.00 0.00 46.17 4.85
4551 5357 3.751767 TGGCAACAGAGAAATGGCT 57.248 47.368 0.00 0.00 46.17 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.