Multiple sequence alignment - TraesCS5A01G331200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G331200 chr5A 100.000 3091 0 0 1 3091 540319070 540322160 0.000000e+00 5709.0
1 TraesCS5A01G331200 chr5D 90.444 1486 112 19 1627 3091 426015589 426017065 0.000000e+00 1930.0
2 TraesCS5A01G331200 chr5D 89.927 1370 98 18 1749 3091 426036566 426037922 0.000000e+00 1729.0
3 TraesCS5A01G331200 chr5D 89.323 768 61 12 841 1598 426014748 426015504 0.000000e+00 944.0
4 TraesCS5A01G331200 chr5D 89.934 606 54 5 1 604 434346499 434347099 0.000000e+00 774.0
5 TraesCS5A01G331200 chr5D 93.347 481 15 3 1041 1514 426035858 426036328 0.000000e+00 695.0
6 TraesCS5A01G331200 chr5D 83.505 97 9 6 1641 1730 159050361 159050265 1.980000e-12 84.2
7 TraesCS5A01G331200 chr5B 91.400 1000 63 13 1708 2691 515587595 515588587 0.000000e+00 1349.0
8 TraesCS5A01G331200 chr5B 86.008 729 62 19 841 1559 515586834 515587532 0.000000e+00 745.0
9 TraesCS5A01G331200 chr5B 89.323 384 39 2 2704 3087 515588867 515589248 5.990000e-132 481.0
10 TraesCS5A01G331200 chr5B 87.923 207 22 3 1079 1283 684449045 684448840 1.110000e-59 241.0
11 TraesCS5A01G331200 chr6D 90.744 605 50 3 1 604 153302299 153301700 0.000000e+00 802.0
12 TraesCS5A01G331200 chr3D 90.461 608 53 4 1 606 561766335 561766939 0.000000e+00 797.0
13 TraesCS5A01G331200 chr3D 89.672 610 56 7 1 606 231732897 231733503 0.000000e+00 771.0
14 TraesCS5A01G331200 chr7D 90.180 611 53 5 1 606 250317430 250318038 0.000000e+00 789.0
15 TraesCS5A01G331200 chr7D 80.909 110 13 7 1630 1731 30100855 30100964 2.560000e-11 80.5
16 TraesCS5A01G331200 chr4D 90.264 606 52 5 1 604 37497369 37496769 0.000000e+00 785.0
17 TraesCS5A01G331200 chr4D 84.821 112 9 7 1625 1730 503360949 503361058 4.220000e-19 106.0
18 TraesCS5A01G331200 chr1D 90.115 607 54 6 1 606 399776206 399776807 0.000000e+00 784.0
19 TraesCS5A01G331200 chr1D 89.542 612 56 8 1 607 441188733 441189341 0.000000e+00 769.0
20 TraesCS5A01G331200 chr7B 89.853 611 54 6 1 606 586054884 586055491 0.000000e+00 778.0
21 TraesCS5A01G331200 chr2A 91.429 210 17 1 1075 1283 451013630 451013421 1.400000e-73 287.0
22 TraesCS5A01G331200 chr2A 80.288 208 29 10 1281 1488 555887768 555887963 2.480000e-31 147.0
23 TraesCS5A01G331200 chr2B 90.952 210 18 1 1075 1283 406098763 406098972 6.530000e-72 281.0
24 TraesCS5A01G331200 chr2B 79.245 106 18 4 2036 2139 507911655 507911552 1.540000e-08 71.3
25 TraesCS5A01G331200 chr2B 86.441 59 5 3 2030 2087 508214149 508214093 9.260000e-06 62.1
26 TraesCS5A01G331200 chr2D 88.626 211 23 1 1074 1283 340510885 340511095 3.960000e-64 255.0
27 TraesCS5A01G331200 chr2D 83.750 80 9 3 2036 2113 430021983 430021906 4.280000e-09 73.1
28 TraesCS5A01G331200 chr4B 93.750 48 1 2 1691 1737 596339113 596339067 1.540000e-08 71.3
29 TraesCS5A01G331200 chr3B 90.000 50 5 0 1686 1735 128367944 128367993 7.150000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G331200 chr5A 540319070 540322160 3090 False 5709.000000 5709 100.000000 1 3091 1 chr5A.!!$F1 3090
1 TraesCS5A01G331200 chr5D 426014748 426017065 2317 False 1437.000000 1930 89.883500 841 3091 2 chr5D.!!$F2 2250
2 TraesCS5A01G331200 chr5D 426035858 426037922 2064 False 1212.000000 1729 91.637000 1041 3091 2 chr5D.!!$F3 2050
3 TraesCS5A01G331200 chr5D 434346499 434347099 600 False 774.000000 774 89.934000 1 604 1 chr5D.!!$F1 603
4 TraesCS5A01G331200 chr5B 515586834 515589248 2414 False 858.333333 1349 88.910333 841 3087 3 chr5B.!!$F1 2246
5 TraesCS5A01G331200 chr6D 153301700 153302299 599 True 802.000000 802 90.744000 1 604 1 chr6D.!!$R1 603
6 TraesCS5A01G331200 chr3D 561766335 561766939 604 False 797.000000 797 90.461000 1 606 1 chr3D.!!$F2 605
7 TraesCS5A01G331200 chr3D 231732897 231733503 606 False 771.000000 771 89.672000 1 606 1 chr3D.!!$F1 605
8 TraesCS5A01G331200 chr7D 250317430 250318038 608 False 789.000000 789 90.180000 1 606 1 chr7D.!!$F2 605
9 TraesCS5A01G331200 chr4D 37496769 37497369 600 True 785.000000 785 90.264000 1 604 1 chr4D.!!$R1 603
10 TraesCS5A01G331200 chr1D 399776206 399776807 601 False 784.000000 784 90.115000 1 606 1 chr1D.!!$F1 605
11 TraesCS5A01G331200 chr1D 441188733 441189341 608 False 769.000000 769 89.542000 1 607 1 chr1D.!!$F2 606
12 TraesCS5A01G331200 chr7B 586054884 586055491 607 False 778.000000 778 89.853000 1 606 1 chr7B.!!$F1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 656 0.034059 CGACTTGGTGGAGCTCTGTT 59.966 55.0 14.64 0.0 0.00 3.16 F
1772 2048 0.035534 TACACGCTTGGCATCCACAT 60.036 50.0 0.00 0.0 30.78 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2160 0.251209 ACGACCACTCTAGCTGGACA 60.251 55.0 12.06 0.0 32.55 4.02 R
3062 3635 0.758685 AATTGTGGTGGGTGTGGTGG 60.759 55.0 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.375853 TTTGCAATCTCGATGGGGCG 61.376 55.000 0.00 0.00 0.00 6.13
54 55 3.840991 TCGGTATCCTGCTAATACCTGT 58.159 45.455 15.88 0.00 44.33 4.00
163 164 4.039973 ACGATCAAGGGTTACAGTTTCAGA 59.960 41.667 0.00 0.00 0.00 3.27
164 165 4.994852 CGATCAAGGGTTACAGTTTCAGAA 59.005 41.667 0.00 0.00 0.00 3.02
202 203 1.709147 GCATGGAGTAGCGGCAACAG 61.709 60.000 1.45 0.00 0.00 3.16
210 211 1.332375 GTAGCGGCAACAGTTGAACAA 59.668 47.619 17.99 0.00 0.00 2.83
285 288 6.879993 TGCAAAATGATTTGGTTGAGCATATT 59.120 30.769 0.00 0.00 44.93 1.28
309 312 2.431782 GGCTCATGTTGGCAACCAATAT 59.568 45.455 26.31 11.19 45.80 1.28
515 526 5.448438 GCTGTCGACACATATCAAAAACAA 58.552 37.500 15.76 0.00 0.00 2.83
520 531 4.377943 CGACACATATCAAAAACAAGGCGA 60.378 41.667 0.00 0.00 0.00 5.54
589 600 1.616159 CGTTTGATTTGGGTCACCCT 58.384 50.000 16.04 0.00 45.70 4.34
596 607 4.340617 TGATTTGGGTCACCCTATTGAAC 58.659 43.478 16.04 0.00 45.70 3.18
607 618 6.599638 GTCACCCTATTGAACTTGCTCTAAAT 59.400 38.462 0.00 0.00 0.00 1.40
608 619 7.121315 GTCACCCTATTGAACTTGCTCTAAATT 59.879 37.037 0.00 0.00 0.00 1.82
609 620 8.325787 TCACCCTATTGAACTTGCTCTAAATTA 58.674 33.333 0.00 0.00 0.00 1.40
610 621 8.956426 CACCCTATTGAACTTGCTCTAAATTAA 58.044 33.333 0.00 0.00 0.00 1.40
611 622 9.700831 ACCCTATTGAACTTGCTCTAAATTAAT 57.299 29.630 0.00 0.00 0.00 1.40
636 647 7.605410 AAATAATAGTAACACGACTTGGTGG 57.395 36.000 0.00 0.00 42.23 4.61
637 648 4.877378 AATAGTAACACGACTTGGTGGA 57.123 40.909 0.00 0.00 42.23 4.02
638 649 2.814280 AGTAACACGACTTGGTGGAG 57.186 50.000 0.00 0.00 42.23 3.86
639 650 1.145803 GTAACACGACTTGGTGGAGC 58.854 55.000 0.00 0.00 42.23 4.70
640 651 1.045407 TAACACGACTTGGTGGAGCT 58.955 50.000 0.00 0.00 42.23 4.09
641 652 0.249911 AACACGACTTGGTGGAGCTC 60.250 55.000 4.71 4.71 42.23 4.09
642 653 1.115930 ACACGACTTGGTGGAGCTCT 61.116 55.000 14.64 0.00 42.23 4.09
643 654 0.668706 CACGACTTGGTGGAGCTCTG 60.669 60.000 14.64 0.00 34.27 3.35
644 655 1.115930 ACGACTTGGTGGAGCTCTGT 61.116 55.000 14.64 3.47 0.00 3.41
645 656 0.034059 CGACTTGGTGGAGCTCTGTT 59.966 55.000 14.64 0.00 0.00 3.16
646 657 1.541233 CGACTTGGTGGAGCTCTGTTT 60.541 52.381 14.64 0.00 0.00 2.83
647 658 1.876156 GACTTGGTGGAGCTCTGTTTG 59.124 52.381 14.64 2.91 0.00 2.93
648 659 0.595095 CTTGGTGGAGCTCTGTTTGC 59.405 55.000 14.64 0.00 0.00 3.68
649 660 0.183492 TTGGTGGAGCTCTGTTTGCT 59.817 50.000 14.64 0.00 44.24 3.91
650 661 0.535780 TGGTGGAGCTCTGTTTGCTG 60.536 55.000 14.64 0.00 41.30 4.41
651 662 1.239968 GGTGGAGCTCTGTTTGCTGG 61.240 60.000 14.64 0.00 41.30 4.85
652 663 0.250467 GTGGAGCTCTGTTTGCTGGA 60.250 55.000 14.64 0.00 41.30 3.86
653 664 0.473755 TGGAGCTCTGTTTGCTGGAA 59.526 50.000 14.64 0.00 41.30 3.53
654 665 1.163554 GGAGCTCTGTTTGCTGGAAG 58.836 55.000 14.64 0.00 41.30 3.46
655 666 1.271054 GGAGCTCTGTTTGCTGGAAGA 60.271 52.381 14.64 0.00 41.30 2.87
656 667 2.617532 GGAGCTCTGTTTGCTGGAAGAT 60.618 50.000 14.64 0.00 41.30 2.40
657 668 3.369892 GGAGCTCTGTTTGCTGGAAGATA 60.370 47.826 14.64 0.00 41.30 1.98
658 669 4.256920 GAGCTCTGTTTGCTGGAAGATAA 58.743 43.478 6.43 0.00 41.30 1.75
659 670 4.853007 AGCTCTGTTTGCTGGAAGATAAT 58.147 39.130 0.00 0.00 39.56 1.28
660 671 4.639310 AGCTCTGTTTGCTGGAAGATAATG 59.361 41.667 0.00 0.00 39.56 1.90
661 672 4.732938 GCTCTGTTTGCTGGAAGATAATGC 60.733 45.833 0.00 0.00 34.07 3.56
662 673 4.592942 TCTGTTTGCTGGAAGATAATGCT 58.407 39.130 0.00 0.00 34.07 3.79
663 674 5.744171 TCTGTTTGCTGGAAGATAATGCTA 58.256 37.500 0.00 0.00 34.07 3.49
664 675 5.586243 TCTGTTTGCTGGAAGATAATGCTAC 59.414 40.000 0.00 0.00 34.07 3.58
665 676 5.500234 TGTTTGCTGGAAGATAATGCTACT 58.500 37.500 0.00 0.00 34.07 2.57
666 677 5.945784 TGTTTGCTGGAAGATAATGCTACTT 59.054 36.000 0.00 0.00 34.07 2.24
667 678 6.127925 TGTTTGCTGGAAGATAATGCTACTTG 60.128 38.462 0.00 0.00 34.07 3.16
668 679 5.102953 TGCTGGAAGATAATGCTACTTGT 57.897 39.130 0.00 0.00 34.07 3.16
669 680 6.233905 TGCTGGAAGATAATGCTACTTGTA 57.766 37.500 0.00 0.00 34.07 2.41
670 681 6.283694 TGCTGGAAGATAATGCTACTTGTAG 58.716 40.000 3.60 3.60 34.07 2.74
671 682 5.698545 GCTGGAAGATAATGCTACTTGTAGG 59.301 44.000 9.49 0.00 34.07 3.18
672 683 6.463049 GCTGGAAGATAATGCTACTTGTAGGA 60.463 42.308 9.49 7.14 34.07 2.94
673 684 7.618019 TGGAAGATAATGCTACTTGTAGGAT 57.382 36.000 8.64 8.64 0.00 3.24
674 685 7.445121 TGGAAGATAATGCTACTTGTAGGATG 58.555 38.462 13.97 0.00 0.00 3.51
675 686 7.071196 TGGAAGATAATGCTACTTGTAGGATGT 59.929 37.037 13.97 7.56 0.00 3.06
676 687 7.386299 GGAAGATAATGCTACTTGTAGGATGTG 59.614 40.741 13.97 0.00 0.00 3.21
677 688 7.603180 AGATAATGCTACTTGTAGGATGTGA 57.397 36.000 13.97 5.33 0.00 3.58
678 689 7.437748 AGATAATGCTACTTGTAGGATGTGAC 58.562 38.462 13.97 7.73 0.00 3.67
679 690 3.503827 TGCTACTTGTAGGATGTGACG 57.496 47.619 9.49 0.00 0.00 4.35
680 691 2.194271 GCTACTTGTAGGATGTGACGC 58.806 52.381 9.49 0.00 0.00 5.19
681 692 2.810650 CTACTTGTAGGATGTGACGCC 58.189 52.381 0.11 0.00 0.00 5.68
682 693 0.249398 ACTTGTAGGATGTGACGCCC 59.751 55.000 0.00 0.00 0.00 6.13
683 694 0.249120 CTTGTAGGATGTGACGCCCA 59.751 55.000 0.00 0.00 0.00 5.36
684 695 0.908910 TTGTAGGATGTGACGCCCAT 59.091 50.000 0.00 0.00 0.00 4.00
685 696 0.464036 TGTAGGATGTGACGCCCATC 59.536 55.000 1.97 1.97 38.37 3.51
686 697 0.464036 GTAGGATGTGACGCCCATCA 59.536 55.000 10.53 0.00 40.38 3.07
687 698 0.752658 TAGGATGTGACGCCCATCAG 59.247 55.000 10.53 0.00 40.38 2.90
688 699 1.221840 GGATGTGACGCCCATCAGT 59.778 57.895 10.53 0.00 40.38 3.41
689 700 0.811616 GGATGTGACGCCCATCAGTC 60.812 60.000 10.53 0.00 40.38 3.51
690 701 0.108186 GATGTGACGCCCATCAGTCA 60.108 55.000 5.07 0.00 44.11 3.41
692 703 2.662596 TGACGCCCATCAGTCACC 59.337 61.111 0.00 0.00 41.81 4.02
693 704 2.213513 TGACGCCCATCAGTCACCA 61.214 57.895 0.00 0.00 41.81 4.17
694 705 1.741770 GACGCCCATCAGTCACCAC 60.742 63.158 0.00 0.00 37.34 4.16
695 706 2.172483 GACGCCCATCAGTCACCACT 62.172 60.000 0.00 0.00 37.34 4.00
696 707 1.448540 CGCCCATCAGTCACCACTC 60.449 63.158 0.00 0.00 0.00 3.51
697 708 1.679311 GCCCATCAGTCACCACTCA 59.321 57.895 0.00 0.00 0.00 3.41
698 709 0.674895 GCCCATCAGTCACCACTCAC 60.675 60.000 0.00 0.00 0.00 3.51
699 710 0.036010 CCCATCAGTCACCACTCACC 60.036 60.000 0.00 0.00 0.00 4.02
700 711 0.686789 CCATCAGTCACCACTCACCA 59.313 55.000 0.00 0.00 0.00 4.17
701 712 1.072173 CCATCAGTCACCACTCACCAA 59.928 52.381 0.00 0.00 0.00 3.67
702 713 2.146342 CATCAGTCACCACTCACCAAC 58.854 52.381 0.00 0.00 0.00 3.77
703 714 0.468226 TCAGTCACCACTCACCAACC 59.532 55.000 0.00 0.00 0.00 3.77
704 715 0.535102 CAGTCACCACTCACCAACCC 60.535 60.000 0.00 0.00 0.00 4.11
705 716 1.228154 GTCACCACTCACCAACCCC 60.228 63.158 0.00 0.00 0.00 4.95
706 717 1.694525 TCACCACTCACCAACCCCA 60.695 57.895 0.00 0.00 0.00 4.96
707 718 1.528309 CACCACTCACCAACCCCAC 60.528 63.158 0.00 0.00 0.00 4.61
708 719 1.696314 ACCACTCACCAACCCCACT 60.696 57.895 0.00 0.00 0.00 4.00
709 720 1.286305 ACCACTCACCAACCCCACTT 61.286 55.000 0.00 0.00 0.00 3.16
710 721 0.537371 CCACTCACCAACCCCACTTC 60.537 60.000 0.00 0.00 0.00 3.01
711 722 0.537371 CACTCACCAACCCCACTTCC 60.537 60.000 0.00 0.00 0.00 3.46
712 723 1.074951 CTCACCAACCCCACTTCCC 59.925 63.158 0.00 0.00 0.00 3.97
713 724 1.386772 TCACCAACCCCACTTCCCT 60.387 57.895 0.00 0.00 0.00 4.20
714 725 0.104356 TCACCAACCCCACTTCCCTA 60.104 55.000 0.00 0.00 0.00 3.53
715 726 0.328258 CACCAACCCCACTTCCCTAG 59.672 60.000 0.00 0.00 0.00 3.02
716 727 0.195096 ACCAACCCCACTTCCCTAGA 59.805 55.000 0.00 0.00 0.00 2.43
717 728 1.203570 ACCAACCCCACTTCCCTAGAT 60.204 52.381 0.00 0.00 0.00 1.98
718 729 2.046729 ACCAACCCCACTTCCCTAGATA 59.953 50.000 0.00 0.00 0.00 1.98
719 730 2.706190 CCAACCCCACTTCCCTAGATAG 59.294 54.545 0.00 0.00 0.00 2.08
720 731 2.104669 ACCCCACTTCCCTAGATAGC 57.895 55.000 0.00 0.00 0.00 2.97
721 732 1.294068 ACCCCACTTCCCTAGATAGCA 59.706 52.381 0.00 0.00 0.00 3.49
722 733 1.974236 CCCCACTTCCCTAGATAGCAG 59.026 57.143 0.00 0.00 0.00 4.24
723 734 1.974236 CCCACTTCCCTAGATAGCAGG 59.026 57.143 0.00 0.00 0.00 4.85
724 735 1.346068 CCACTTCCCTAGATAGCAGGC 59.654 57.143 0.00 0.00 0.00 4.85
725 736 2.324541 CACTTCCCTAGATAGCAGGCT 58.675 52.381 0.00 0.00 0.00 4.58
726 737 2.036992 CACTTCCCTAGATAGCAGGCTG 59.963 54.545 10.94 10.94 0.00 4.85
727 738 2.324541 CTTCCCTAGATAGCAGGCTGT 58.675 52.381 17.16 5.61 0.00 4.40
728 739 1.709578 TCCCTAGATAGCAGGCTGTG 58.290 55.000 17.16 0.00 0.00 3.66
729 740 0.683973 CCCTAGATAGCAGGCTGTGG 59.316 60.000 17.16 7.10 0.00 4.17
730 741 1.418334 CCTAGATAGCAGGCTGTGGT 58.582 55.000 17.16 3.89 40.92 4.16
731 742 2.598565 CCTAGATAGCAGGCTGTGGTA 58.401 52.381 17.16 6.12 43.25 3.25
732 743 2.560542 CCTAGATAGCAGGCTGTGGTAG 59.439 54.545 17.16 9.80 42.37 3.18
744 755 3.071874 CTGTGGTAGCCCAAATCAAGA 57.928 47.619 0.00 0.00 44.15 3.02
745 756 3.012518 CTGTGGTAGCCCAAATCAAGAG 58.987 50.000 0.00 0.00 44.15 2.85
746 757 2.642311 TGTGGTAGCCCAAATCAAGAGA 59.358 45.455 0.00 0.00 44.15 3.10
747 758 3.266772 TGTGGTAGCCCAAATCAAGAGAT 59.733 43.478 0.00 0.00 44.15 2.75
748 759 3.879892 GTGGTAGCCCAAATCAAGAGATC 59.120 47.826 0.00 0.00 44.15 2.75
749 760 3.782523 TGGTAGCCCAAATCAAGAGATCT 59.217 43.478 0.00 0.00 37.98 2.75
750 761 4.133078 GGTAGCCCAAATCAAGAGATCTG 58.867 47.826 0.00 0.00 31.90 2.90
751 762 3.294038 AGCCCAAATCAAGAGATCTGG 57.706 47.619 0.00 0.00 41.26 3.86
752 763 2.848694 AGCCCAAATCAAGAGATCTGGA 59.151 45.455 0.00 0.00 43.78 3.86
753 764 3.462579 AGCCCAAATCAAGAGATCTGGAT 59.537 43.478 0.00 0.00 43.78 3.41
754 765 3.568853 GCCCAAATCAAGAGATCTGGATG 59.431 47.826 0.00 0.00 43.78 3.51
755 766 4.789807 CCCAAATCAAGAGATCTGGATGT 58.210 43.478 0.00 0.00 43.78 3.06
756 767 5.198965 CCCAAATCAAGAGATCTGGATGTT 58.801 41.667 0.00 0.00 43.78 2.71
757 768 5.298777 CCCAAATCAAGAGATCTGGATGTTC 59.701 44.000 0.00 0.00 43.78 3.18
758 769 5.007430 CCAAATCAAGAGATCTGGATGTTCG 59.993 44.000 0.00 0.00 43.78 3.95
759 770 5.604758 AATCAAGAGATCTGGATGTTCGA 57.395 39.130 0.00 0.00 36.77 3.71
760 771 5.604758 ATCAAGAGATCTGGATGTTCGAA 57.395 39.130 0.00 0.00 35.38 3.71
761 772 5.604758 TCAAGAGATCTGGATGTTCGAAT 57.395 39.130 0.00 0.00 0.00 3.34
762 773 6.715347 TCAAGAGATCTGGATGTTCGAATA 57.285 37.500 0.00 0.00 0.00 1.75
763 774 6.507900 TCAAGAGATCTGGATGTTCGAATAC 58.492 40.000 0.00 0.00 0.00 1.89
764 775 6.096846 TCAAGAGATCTGGATGTTCGAATACA 59.903 38.462 0.00 0.00 0.00 2.29
765 776 5.837437 AGAGATCTGGATGTTCGAATACAC 58.163 41.667 0.00 0.00 0.00 2.90
766 777 5.360999 AGAGATCTGGATGTTCGAATACACA 59.639 40.000 0.00 0.00 0.00 3.72
767 778 6.041409 AGAGATCTGGATGTTCGAATACACAT 59.959 38.462 0.00 0.00 36.28 3.21
768 779 6.586344 AGATCTGGATGTTCGAATACACATT 58.414 36.000 0.00 0.00 33.62 2.71
769 780 6.481313 AGATCTGGATGTTCGAATACACATTG 59.519 38.462 0.00 0.00 33.62 2.82
770 781 5.729510 TCTGGATGTTCGAATACACATTGA 58.270 37.500 0.00 0.00 33.62 2.57
771 782 5.580691 TCTGGATGTTCGAATACACATTGAC 59.419 40.000 0.00 0.00 33.62 3.18
772 783 5.241662 TGGATGTTCGAATACACATTGACA 58.758 37.500 0.00 0.00 33.62 3.58
773 784 5.351189 TGGATGTTCGAATACACATTGACAG 59.649 40.000 0.00 0.00 33.62 3.51
774 785 5.220662 GGATGTTCGAATACACATTGACAGG 60.221 44.000 0.00 0.00 33.62 4.00
775 786 4.888917 TGTTCGAATACACATTGACAGGA 58.111 39.130 0.00 0.00 0.00 3.86
776 787 5.301555 TGTTCGAATACACATTGACAGGAA 58.698 37.500 0.00 0.00 0.00 3.36
777 788 5.178623 TGTTCGAATACACATTGACAGGAAC 59.821 40.000 0.00 0.00 0.00 3.62
778 789 4.888917 TCGAATACACATTGACAGGAACA 58.111 39.130 0.00 0.00 0.00 3.18
779 790 4.688879 TCGAATACACATTGACAGGAACAC 59.311 41.667 0.00 0.00 0.00 3.32
780 791 4.690748 CGAATACACATTGACAGGAACACT 59.309 41.667 0.00 0.00 0.00 3.55
781 792 5.163953 CGAATACACATTGACAGGAACACTC 60.164 44.000 0.00 0.00 0.00 3.51
782 793 3.558931 ACACATTGACAGGAACACTCA 57.441 42.857 0.00 0.00 0.00 3.41
783 794 3.884895 ACACATTGACAGGAACACTCAA 58.115 40.909 0.00 0.00 32.02 3.02
784 795 4.269183 ACACATTGACAGGAACACTCAAA 58.731 39.130 0.00 0.00 31.41 2.69
785 796 4.096382 ACACATTGACAGGAACACTCAAAC 59.904 41.667 0.00 0.00 31.41 2.93
786 797 4.096231 CACATTGACAGGAACACTCAAACA 59.904 41.667 0.00 0.00 31.41 2.83
787 798 4.889409 ACATTGACAGGAACACTCAAACAT 59.111 37.500 0.00 0.00 31.41 2.71
788 799 4.898829 TTGACAGGAACACTCAAACATG 57.101 40.909 0.00 0.00 0.00 3.21
789 800 3.884895 TGACAGGAACACTCAAACATGT 58.115 40.909 0.00 0.00 0.00 3.21
790 801 3.876914 TGACAGGAACACTCAAACATGTC 59.123 43.478 0.00 0.00 37.05 3.06
791 802 3.214328 ACAGGAACACTCAAACATGTCC 58.786 45.455 0.00 0.00 0.00 4.02
792 803 3.213506 CAGGAACACTCAAACATGTCCA 58.786 45.455 0.00 0.00 0.00 4.02
793 804 3.822735 CAGGAACACTCAAACATGTCCAT 59.177 43.478 0.00 0.00 0.00 3.41
794 805 5.003160 CAGGAACACTCAAACATGTCCATA 58.997 41.667 0.00 0.00 0.00 2.74
795 806 5.649395 CAGGAACACTCAAACATGTCCATAT 59.351 40.000 0.00 0.00 0.00 1.78
796 807 5.882557 AGGAACACTCAAACATGTCCATATC 59.117 40.000 0.00 0.00 0.00 1.63
797 808 5.882557 GGAACACTCAAACATGTCCATATCT 59.117 40.000 0.00 0.00 0.00 1.98
798 809 6.375455 GGAACACTCAAACATGTCCATATCTT 59.625 38.462 0.00 0.00 0.00 2.40
799 810 7.094205 GGAACACTCAAACATGTCCATATCTTT 60.094 37.037 0.00 0.00 0.00 2.52
800 811 7.765695 ACACTCAAACATGTCCATATCTTTT 57.234 32.000 0.00 0.00 0.00 2.27
801 812 7.596494 ACACTCAAACATGTCCATATCTTTTG 58.404 34.615 0.00 0.00 0.00 2.44
802 813 6.529125 CACTCAAACATGTCCATATCTTTTGC 59.471 38.462 0.00 0.00 0.00 3.68
803 814 6.209192 ACTCAAACATGTCCATATCTTTTGCA 59.791 34.615 0.00 0.00 0.00 4.08
804 815 7.093640 ACTCAAACATGTCCATATCTTTTGCAT 60.094 33.333 0.00 0.00 0.00 3.96
805 816 7.613585 TCAAACATGTCCATATCTTTTGCATT 58.386 30.769 0.00 0.00 0.00 3.56
806 817 7.546316 TCAAACATGTCCATATCTTTTGCATTG 59.454 33.333 0.00 0.00 0.00 2.82
807 818 6.534475 ACATGTCCATATCTTTTGCATTGT 57.466 33.333 0.00 0.00 0.00 2.71
808 819 6.938507 ACATGTCCATATCTTTTGCATTGTT 58.061 32.000 0.00 0.00 0.00 2.83
809 820 8.065473 ACATGTCCATATCTTTTGCATTGTTA 57.935 30.769 0.00 0.00 0.00 2.41
810 821 8.698210 ACATGTCCATATCTTTTGCATTGTTAT 58.302 29.630 0.00 0.00 0.00 1.89
811 822 9.537192 CATGTCCATATCTTTTGCATTGTTATT 57.463 29.630 0.00 0.00 0.00 1.40
831 842 9.719355 TGTTATTTATAGTACTATGCACCATGG 57.281 33.333 23.09 11.19 0.00 3.66
832 843 9.938280 GTTATTTATAGTACTATGCACCATGGA 57.062 33.333 23.09 0.00 0.00 3.41
835 846 7.790782 TTATAGTACTATGCACCATGGATGA 57.209 36.000 23.09 0.69 29.08 2.92
836 847 6.686484 ATAGTACTATGCACCATGGATGAA 57.314 37.500 21.47 8.17 29.08 2.57
837 848 4.965814 AGTACTATGCACCATGGATGAAG 58.034 43.478 21.47 11.14 29.08 3.02
838 849 3.219176 ACTATGCACCATGGATGAAGG 57.781 47.619 21.47 6.83 29.08 3.46
839 850 2.158564 ACTATGCACCATGGATGAAGGG 60.159 50.000 21.47 7.15 29.08 3.95
852 863 1.072505 GAAGGGAACAACCTGCGGA 59.927 57.895 0.00 0.00 40.87 5.54
854 865 0.537371 AAGGGAACAACCTGCGGAAG 60.537 55.000 0.00 0.00 40.87 3.46
859 870 2.095212 GGAACAACCTGCGGAAGAAATC 60.095 50.000 0.00 0.00 35.41 2.17
861 872 0.447801 CAACCTGCGGAAGAAATCGG 59.552 55.000 0.00 0.00 0.00 4.18
873 884 5.585390 GGAAGAAATCGGTAAGATACGACA 58.415 41.667 0.00 0.00 42.39 4.35
878 889 2.086094 TCGGTAAGATACGACAGTGCA 58.914 47.619 0.00 0.00 33.69 4.57
888 899 2.124983 ACAGTGCATAGCAGCCGG 60.125 61.111 0.00 0.00 40.08 6.13
901 912 2.746277 GCCGGAGCGTGACCAAAT 60.746 61.111 5.05 0.00 0.00 2.32
917 928 0.981183 AAATCCCTGACGCCACAGTA 59.019 50.000 0.00 0.00 36.30 2.74
921 932 2.264794 CTGACGCCACAGTACCCC 59.735 66.667 0.00 0.00 33.73 4.95
926 937 2.983791 GCCACAGTACCCCGCTAA 59.016 61.111 0.00 0.00 0.00 3.09
927 938 1.153429 GCCACAGTACCCCGCTAAG 60.153 63.158 0.00 0.00 0.00 2.18
928 939 1.153429 CCACAGTACCCCGCTAAGC 60.153 63.158 0.00 0.00 0.00 3.09
929 940 1.614241 CCACAGTACCCCGCTAAGCT 61.614 60.000 0.00 0.00 0.00 3.74
930 941 0.460284 CACAGTACCCCGCTAAGCTG 60.460 60.000 0.00 0.00 0.00 4.24
931 942 0.903454 ACAGTACCCCGCTAAGCTGT 60.903 55.000 0.00 0.00 33.05 4.40
932 943 1.108776 CAGTACCCCGCTAAGCTGTA 58.891 55.000 0.00 0.00 0.00 2.74
933 944 1.067212 CAGTACCCCGCTAAGCTGTAG 59.933 57.143 0.00 0.00 0.00 2.74
941 952 4.929808 CCCCGCTAAGCTGTAGTATAAATG 59.070 45.833 0.00 0.00 0.00 2.32
955 966 5.193679 AGTATAAATGAAGGTGGAAGGTGC 58.806 41.667 0.00 0.00 0.00 5.01
957 968 1.915141 AATGAAGGTGGAAGGTGCAG 58.085 50.000 0.00 0.00 0.00 4.41
958 969 0.038744 ATGAAGGTGGAAGGTGCAGG 59.961 55.000 0.00 0.00 0.00 4.85
963 974 2.530151 TGGAAGGTGCAGGCCTCT 60.530 61.111 0.00 0.00 38.03 3.69
967 978 2.811542 GAAGGTGCAGGCCTCTCCAC 62.812 65.000 0.00 10.85 38.03 4.02
978 989 1.937108 GCCTCTCCACTTCACTCAACG 60.937 57.143 0.00 0.00 0.00 4.10
981 992 3.306364 CCTCTCCACTTCACTCAACGATT 60.306 47.826 0.00 0.00 0.00 3.34
983 994 4.703897 TCTCCACTTCACTCAACGATTTT 58.296 39.130 0.00 0.00 0.00 1.82
989 1000 6.094048 CCACTTCACTCAACGATTTTATCCAT 59.906 38.462 0.00 0.00 0.00 3.41
999 1010 4.578928 ACGATTTTATCCATTACAGTGGCC 59.421 41.667 0.00 0.00 39.19 5.36
1000 1011 4.578516 CGATTTTATCCATTACAGTGGCCA 59.421 41.667 0.00 0.00 39.19 5.36
1001 1012 5.241506 CGATTTTATCCATTACAGTGGCCAT 59.758 40.000 9.72 0.00 39.19 4.40
1003 1014 2.369983 ATCCATTACAGTGGCCATGG 57.630 50.000 9.72 12.20 39.19 3.66
1004 1015 0.395586 TCCATTACAGTGGCCATGGC 60.396 55.000 29.47 29.47 39.19 4.40
1005 1016 0.683828 CCATTACAGTGGCCATGGCA 60.684 55.000 36.56 20.63 44.11 4.92
1006 1017 1.184431 CATTACAGTGGCCATGGCAA 58.816 50.000 36.56 25.95 44.11 4.52
1007 1018 1.549620 CATTACAGTGGCCATGGCAAA 59.450 47.619 36.56 22.31 44.11 3.68
1009 1020 1.250154 TACAGTGGCCATGGCAAAGC 61.250 55.000 36.56 22.08 44.11 3.51
1010 1021 2.118951 AGTGGCCATGGCAAAGCT 59.881 55.556 36.56 23.80 44.11 3.74
1011 1022 0.966875 CAGTGGCCATGGCAAAGCTA 60.967 55.000 36.56 13.27 44.11 3.32
1013 1024 0.967380 GTGGCCATGGCAAAGCTAGT 60.967 55.000 36.56 0.00 44.11 2.57
1014 1025 0.251742 TGGCCATGGCAAAGCTAGTT 60.252 50.000 36.56 0.00 44.11 2.24
1015 1026 0.897621 GGCCATGGCAAAGCTAGTTT 59.102 50.000 36.56 0.00 44.11 2.66
1016 1027 1.134995 GGCCATGGCAAAGCTAGTTTC 60.135 52.381 36.56 12.09 44.11 2.78
1017 1028 1.134995 GCCATGGCAAAGCTAGTTTCC 60.135 52.381 32.08 0.00 41.49 3.13
1018 1029 2.170166 CCATGGCAAAGCTAGTTTCCA 58.830 47.619 0.00 2.80 32.94 3.53
1019 1030 2.165030 CCATGGCAAAGCTAGTTTCCAG 59.835 50.000 0.00 0.29 32.34 3.86
1020 1031 2.656947 TGGCAAAGCTAGTTTCCAGT 57.343 45.000 0.00 0.00 0.00 4.00
1021 1032 2.944129 TGGCAAAGCTAGTTTCCAGTT 58.056 42.857 0.00 0.00 0.00 3.16
1022 1033 2.884639 TGGCAAAGCTAGTTTCCAGTTC 59.115 45.455 0.00 0.00 0.00 3.01
1023 1034 2.229062 GGCAAAGCTAGTTTCCAGTTCC 59.771 50.000 0.00 0.00 0.00 3.62
1026 1037 3.425162 AAGCTAGTTTCCAGTTCCAGG 57.575 47.619 0.00 0.00 0.00 4.45
1027 1038 1.630878 AGCTAGTTTCCAGTTCCAGGG 59.369 52.381 0.00 0.00 0.00 4.45
1028 1039 1.628846 GCTAGTTTCCAGTTCCAGGGA 59.371 52.381 0.00 0.00 0.00 4.20
1029 1040 2.355209 GCTAGTTTCCAGTTCCAGGGAG 60.355 54.545 0.00 0.00 34.02 4.30
1049 1068 1.588082 GAACCTGTGGCAATGGCTG 59.412 57.895 8.59 0.00 40.87 4.85
1572 1788 0.321653 GCACCAAACTGAGACCCGAT 60.322 55.000 0.00 0.00 0.00 4.18
1573 1789 1.066430 GCACCAAACTGAGACCCGATA 60.066 52.381 0.00 0.00 0.00 2.92
1592 1808 5.874810 CCGATAGTGGAAAAGTCAAATCTCA 59.125 40.000 0.00 0.00 0.00 3.27
1745 2021 5.030147 AGGGAGTACAACACTATCCATGAA 58.970 41.667 0.00 0.00 37.72 2.57
1751 2027 8.324163 AGTACAACACTATCCATGAAAGAAAC 57.676 34.615 0.00 0.00 34.98 2.78
1772 2048 0.035534 TACACGCTTGGCATCCACAT 60.036 50.000 0.00 0.00 30.78 3.21
1829 2106 6.884836 GGAAGATAAACTACATTGGGTTGTCT 59.115 38.462 0.00 0.00 34.29 3.41
1840 2117 0.036388 GGGTTGTCTGAAGCATCGGA 60.036 55.000 0.00 0.00 38.66 4.55
1863 2140 2.125552 CCATCCGAAGAGCGCACA 60.126 61.111 11.47 0.00 39.11 4.57
1883 2160 3.800826 GGTTCATCCCATAACCGCT 57.199 52.632 0.00 0.00 36.12 5.52
1928 2205 3.201353 TCGAGAGATGTCGAGGAAGAT 57.799 47.619 0.00 0.00 43.91 2.40
1968 2252 6.127925 ACGTACATTTTCATGCTCAATCATGT 60.128 34.615 0.00 0.00 43.18 3.21
1976 2260 5.130350 TCATGCTCAATCATGTCATGTCAT 58.870 37.500 12.54 0.00 43.18 3.06
1991 2275 5.634859 GTCATGTCATGGTCATTTTTGGTTC 59.365 40.000 12.90 0.00 0.00 3.62
1993 2277 3.005261 TGTCATGGTCATTTTTGGTTCCG 59.995 43.478 0.00 0.00 0.00 4.30
1994 2278 3.005367 GTCATGGTCATTTTTGGTTCCGT 59.995 43.478 0.00 0.00 0.00 4.69
2001 2285 5.084055 GTCATTTTTGGTTCCGTAATCGTC 58.916 41.667 0.00 0.00 35.01 4.20
2020 2304 3.665323 CGTCTGAATTTTGTTCCTGCTCG 60.665 47.826 0.00 0.00 0.00 5.03
2021 2305 3.251004 GTCTGAATTTTGTTCCTGCTCGT 59.749 43.478 0.00 0.00 0.00 4.18
2022 2306 4.451096 GTCTGAATTTTGTTCCTGCTCGTA 59.549 41.667 0.00 0.00 0.00 3.43
2023 2307 5.122396 GTCTGAATTTTGTTCCTGCTCGTAT 59.878 40.000 0.00 0.00 0.00 3.06
2031 2315 8.958119 TTTTGTTCCTGCTCGTATATAATCTT 57.042 30.769 0.00 0.00 0.00 2.40
2064 2348 2.264005 TTGGAATTGTGGCGTACAGT 57.736 45.000 0.00 0.00 41.10 3.55
2093 2377 2.829120 GCAGAGGGTTCTTCTCTAGTGT 59.171 50.000 0.00 0.00 39.36 3.55
2112 2396 1.891919 GCCAAAGCTGGTCGACACA 60.892 57.895 18.91 11.87 45.53 3.72
2202 2490 7.259290 TGACAAATCCTTCTCTTTGTACAAC 57.741 36.000 8.07 0.00 43.61 3.32
2344 2632 2.125269 GCGGGTTAGCACGATGGT 60.125 61.111 5.03 0.00 45.97 3.55
2384 2672 2.280119 TCGCAACTCGCACTTGCT 60.280 55.556 0.00 0.00 41.64 3.91
2516 2804 1.506718 CGAGCTTGAGTCCTACGCA 59.493 57.895 0.00 0.00 0.00 5.24
2569 2858 2.930826 TCCTGAACACTTGGAAGGAC 57.069 50.000 0.00 0.00 32.07 3.85
2612 2901 0.250295 CTGGAAGGCCGAGTGACAAA 60.250 55.000 0.00 0.00 36.79 2.83
2651 2940 8.519799 TGGAATAAAGAGTTCACTGTTTCTTT 57.480 30.769 5.41 2.13 39.67 2.52
2652 2941 9.621629 TGGAATAAAGAGTTCACTGTTTCTTTA 57.378 29.630 5.41 7.69 42.77 1.85
2709 3277 2.359214 TGTGTGTGTGTGTGTGTGTTTT 59.641 40.909 0.00 0.00 0.00 2.43
2715 3283 3.911964 GTGTGTGTGTGTGTTTTCTTGAC 59.088 43.478 0.00 0.00 0.00 3.18
2741 3309 0.916086 TGTTGTATCCCGGGAAGCAT 59.084 50.000 30.84 14.27 0.00 3.79
2785 3353 4.694339 ACTCTGGAAATAATGTACGGAGC 58.306 43.478 0.00 0.00 37.93 4.70
2814 3386 4.805192 GTGTTGTGGTCGTGAGTAAGTTAA 59.195 41.667 0.00 0.00 0.00 2.01
2816 3388 3.645884 TGTGGTCGTGAGTAAGTTAAGC 58.354 45.455 0.00 0.00 0.00 3.09
2826 3398 6.149633 GTGAGTAAGTTAAGCCCATTTGTTG 58.850 40.000 0.00 0.00 0.00 3.33
2827 3399 5.830991 TGAGTAAGTTAAGCCCATTTGTTGT 59.169 36.000 0.00 0.00 0.00 3.32
2837 3409 2.637382 CCCATTTGTTGTAAAAGGGCCT 59.363 45.455 0.00 0.00 39.19 5.19
2893 3465 0.250467 CTCCCAACTCATATGGCCCG 60.250 60.000 0.00 0.00 36.58 6.13
2908 3480 0.674269 GCCCGTTTATCCGAACCACA 60.674 55.000 0.00 0.00 0.00 4.17
2914 3486 3.989167 CGTTTATCCGAACCACACAGTTA 59.011 43.478 0.00 0.00 0.00 2.24
2918 3490 2.313317 TCCGAACCACACAGTTACTCT 58.687 47.619 0.00 0.00 0.00 3.24
2953 3525 9.679661 TGAAGATATTGGTATTTCAGCTTGTAA 57.320 29.630 0.00 0.00 0.00 2.41
2965 3537 5.273674 TCAGCTTGTAATCTCTCATCCAG 57.726 43.478 0.00 0.00 0.00 3.86
3037 3609 5.546526 AGAAGAAGAGTGAAGATGGTTGAC 58.453 41.667 0.00 0.00 0.00 3.18
3051 3624 6.061441 AGATGGTTGACACAACTGATACAAA 58.939 36.000 13.05 0.00 0.00 2.83
3060 3633 3.957497 ACAACTGATACAAAGCCCAACAA 59.043 39.130 0.00 0.00 0.00 2.83
3062 3635 2.890945 ACTGATACAAAGCCCAACAACC 59.109 45.455 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.857592 TTAGCAGGATACCGAACGAC 57.142 50.000 0.00 0.00 37.17 4.34
54 55 0.391228 TCCACAGTTTCTGCGTGCTA 59.609 50.000 0.00 0.00 34.37 3.49
153 154 6.732154 CACAACATTCTCATTCTGAAACTGT 58.268 36.000 0.00 0.00 0.00 3.55
163 164 3.508402 TGCTCATGCACAACATTCTCATT 59.492 39.130 0.00 0.00 45.31 2.57
164 165 3.086282 TGCTCATGCACAACATTCTCAT 58.914 40.909 0.00 0.00 45.31 2.90
179 180 1.070445 GCCGCTACTCCATGCTCAT 59.930 57.895 0.00 0.00 0.00 2.90
202 203 6.705381 TGATGAAATTGGGTGAATTGTTCAAC 59.295 34.615 0.00 0.00 46.62 3.18
210 211 6.636705 CATGTCTTGATGAAATTGGGTGAAT 58.363 36.000 0.00 0.00 0.00 2.57
285 288 1.470996 GGTTGCCAACATGAGCCCAA 61.471 55.000 10.18 0.00 0.00 4.12
430 435 1.650825 GCCGCCCAATTTTACATTGG 58.349 50.000 3.29 3.29 46.11 3.16
496 507 4.377943 CGCCTTGTTTTTGATATGTGTCGA 60.378 41.667 0.00 0.00 0.00 4.20
501 512 4.472286 CGTTCGCCTTGTTTTTGATATGT 58.528 39.130 0.00 0.00 0.00 2.29
533 544 1.756408 TTGTCCGTTTAGGTCGGCCA 61.756 55.000 9.71 0.00 46.49 5.36
563 574 1.201414 ACCCAAATCAAACGGCGATTC 59.799 47.619 16.62 0.00 31.90 2.52
610 621 9.321562 CCACCAAGTCGTGTTACTATTATTTAT 57.678 33.333 0.00 0.00 31.47 1.40
611 622 8.530311 TCCACCAAGTCGTGTTACTATTATTTA 58.470 33.333 0.00 0.00 31.47 1.40
612 623 7.388437 TCCACCAAGTCGTGTTACTATTATTT 58.612 34.615 0.00 0.00 31.47 1.40
613 624 6.938507 TCCACCAAGTCGTGTTACTATTATT 58.061 36.000 0.00 0.00 31.47 1.40
614 625 6.534475 TCCACCAAGTCGTGTTACTATTAT 57.466 37.500 0.00 0.00 31.47 1.28
615 626 5.622914 GCTCCACCAAGTCGTGTTACTATTA 60.623 44.000 0.00 0.00 31.47 0.98
616 627 4.817517 CTCCACCAAGTCGTGTTACTATT 58.182 43.478 0.00 0.00 31.47 1.73
617 628 3.368116 GCTCCACCAAGTCGTGTTACTAT 60.368 47.826 0.00 0.00 31.47 2.12
618 629 2.029649 GCTCCACCAAGTCGTGTTACTA 60.030 50.000 0.00 0.00 31.47 1.82
619 630 1.270147 GCTCCACCAAGTCGTGTTACT 60.270 52.381 0.00 0.00 31.47 2.24
620 631 1.145803 GCTCCACCAAGTCGTGTTAC 58.854 55.000 0.00 0.00 31.47 2.50
621 632 1.000506 GAGCTCCACCAAGTCGTGTTA 59.999 52.381 0.87 0.00 31.47 2.41
622 633 0.249911 GAGCTCCACCAAGTCGTGTT 60.250 55.000 0.87 0.00 31.47 3.32
623 634 1.115930 AGAGCTCCACCAAGTCGTGT 61.116 55.000 10.93 0.00 31.47 4.49
624 635 0.668706 CAGAGCTCCACCAAGTCGTG 60.669 60.000 10.93 0.00 0.00 4.35
625 636 1.115930 ACAGAGCTCCACCAAGTCGT 61.116 55.000 10.93 0.00 0.00 4.34
626 637 0.034059 AACAGAGCTCCACCAAGTCG 59.966 55.000 10.93 0.00 0.00 4.18
627 638 1.876156 CAAACAGAGCTCCACCAAGTC 59.124 52.381 10.93 0.00 0.00 3.01
628 639 1.972872 CAAACAGAGCTCCACCAAGT 58.027 50.000 10.93 0.00 0.00 3.16
629 640 0.595095 GCAAACAGAGCTCCACCAAG 59.405 55.000 10.93 0.00 0.00 3.61
630 641 0.183492 AGCAAACAGAGCTCCACCAA 59.817 50.000 10.93 0.00 38.01 3.67
631 642 0.535780 CAGCAAACAGAGCTCCACCA 60.536 55.000 10.93 0.00 41.14 4.17
632 643 1.239968 CCAGCAAACAGAGCTCCACC 61.240 60.000 10.93 0.00 41.14 4.61
633 644 0.250467 TCCAGCAAACAGAGCTCCAC 60.250 55.000 10.93 0.00 41.14 4.02
634 645 0.473755 TTCCAGCAAACAGAGCTCCA 59.526 50.000 10.93 0.00 41.14 3.86
635 646 1.163554 CTTCCAGCAAACAGAGCTCC 58.836 55.000 10.93 0.00 41.14 4.70
636 647 2.175878 TCTTCCAGCAAACAGAGCTC 57.824 50.000 5.27 5.27 41.14 4.09
637 648 2.875094 ATCTTCCAGCAAACAGAGCT 57.125 45.000 0.00 0.00 44.62 4.09
638 649 4.732938 GCATTATCTTCCAGCAAACAGAGC 60.733 45.833 0.00 0.00 0.00 4.09
639 650 4.639310 AGCATTATCTTCCAGCAAACAGAG 59.361 41.667 0.00 0.00 0.00 3.35
640 651 4.592942 AGCATTATCTTCCAGCAAACAGA 58.407 39.130 0.00 0.00 0.00 3.41
641 652 4.978083 AGCATTATCTTCCAGCAAACAG 57.022 40.909 0.00 0.00 0.00 3.16
642 653 5.500234 AGTAGCATTATCTTCCAGCAAACA 58.500 37.500 0.00 0.00 0.00 2.83
643 654 6.127897 ACAAGTAGCATTATCTTCCAGCAAAC 60.128 38.462 0.00 0.00 0.00 2.93
644 655 5.945784 ACAAGTAGCATTATCTTCCAGCAAA 59.054 36.000 0.00 0.00 0.00 3.68
645 656 5.500234 ACAAGTAGCATTATCTTCCAGCAA 58.500 37.500 0.00 0.00 0.00 3.91
646 657 5.102953 ACAAGTAGCATTATCTTCCAGCA 57.897 39.130 0.00 0.00 0.00 4.41
647 658 5.698545 CCTACAAGTAGCATTATCTTCCAGC 59.301 44.000 1.69 0.00 31.95 4.85
648 659 7.055667 TCCTACAAGTAGCATTATCTTCCAG 57.944 40.000 1.69 0.00 31.95 3.86
649 660 7.071196 ACATCCTACAAGTAGCATTATCTTCCA 59.929 37.037 1.69 0.00 31.95 3.53
650 661 7.386299 CACATCCTACAAGTAGCATTATCTTCC 59.614 40.741 1.69 0.00 31.95 3.46
651 662 8.144478 TCACATCCTACAAGTAGCATTATCTTC 58.856 37.037 1.69 0.00 31.95 2.87
652 663 7.928706 GTCACATCCTACAAGTAGCATTATCTT 59.071 37.037 1.69 0.00 31.95 2.40
653 664 7.437748 GTCACATCCTACAAGTAGCATTATCT 58.562 38.462 1.69 0.00 31.95 1.98
654 665 6.363626 CGTCACATCCTACAAGTAGCATTATC 59.636 42.308 1.69 0.00 31.95 1.75
655 666 6.216569 CGTCACATCCTACAAGTAGCATTAT 58.783 40.000 1.69 0.00 31.95 1.28
656 667 5.588240 CGTCACATCCTACAAGTAGCATTA 58.412 41.667 1.69 0.00 31.95 1.90
657 668 4.433615 CGTCACATCCTACAAGTAGCATT 58.566 43.478 1.69 0.00 31.95 3.56
658 669 3.738281 GCGTCACATCCTACAAGTAGCAT 60.738 47.826 1.69 0.00 31.95 3.79
659 670 2.416836 GCGTCACATCCTACAAGTAGCA 60.417 50.000 1.69 0.00 31.95 3.49
660 671 2.194271 GCGTCACATCCTACAAGTAGC 58.806 52.381 1.69 0.00 31.95 3.58
661 672 2.481449 GGGCGTCACATCCTACAAGTAG 60.481 54.545 0.21 0.21 0.00 2.57
662 673 1.479323 GGGCGTCACATCCTACAAGTA 59.521 52.381 0.00 0.00 0.00 2.24
663 674 0.249398 GGGCGTCACATCCTACAAGT 59.751 55.000 0.00 0.00 0.00 3.16
664 675 0.249120 TGGGCGTCACATCCTACAAG 59.751 55.000 0.00 0.00 0.00 3.16
665 676 0.908910 ATGGGCGTCACATCCTACAA 59.091 50.000 0.00 0.00 0.00 2.41
666 677 0.464036 GATGGGCGTCACATCCTACA 59.536 55.000 9.98 0.00 38.98 2.74
667 678 0.464036 TGATGGGCGTCACATCCTAC 59.536 55.000 16.14 0.00 43.10 3.18
668 679 0.752658 CTGATGGGCGTCACATCCTA 59.247 55.000 16.14 2.17 43.10 2.94
669 680 1.267574 ACTGATGGGCGTCACATCCT 61.268 55.000 16.14 2.84 43.10 3.24
670 681 0.811616 GACTGATGGGCGTCACATCC 60.812 60.000 16.14 1.86 43.10 3.51
671 682 0.108186 TGACTGATGGGCGTCACATC 60.108 55.000 13.16 13.16 43.82 3.06
672 683 1.982430 TGACTGATGGGCGTCACAT 59.018 52.632 0.00 0.00 35.40 3.21
673 684 3.465701 TGACTGATGGGCGTCACA 58.534 55.556 0.00 0.00 35.40 3.58
675 686 2.213513 TGGTGACTGATGGGCGTCA 61.214 57.895 0.00 0.00 37.79 4.35
676 687 1.741770 GTGGTGACTGATGGGCGTC 60.742 63.158 0.00 0.00 0.00 5.19
677 688 2.172483 GAGTGGTGACTGATGGGCGT 62.172 60.000 0.00 0.00 30.16 5.68
678 689 1.448540 GAGTGGTGACTGATGGGCG 60.449 63.158 0.00 0.00 30.16 6.13
679 690 0.674895 GTGAGTGGTGACTGATGGGC 60.675 60.000 0.00 0.00 30.16 5.36
680 691 0.036010 GGTGAGTGGTGACTGATGGG 60.036 60.000 0.00 0.00 30.16 4.00
681 692 0.686789 TGGTGAGTGGTGACTGATGG 59.313 55.000 0.00 0.00 30.16 3.51
682 693 2.146342 GTTGGTGAGTGGTGACTGATG 58.854 52.381 0.00 0.00 30.16 3.07
683 694 1.072331 GGTTGGTGAGTGGTGACTGAT 59.928 52.381 0.00 0.00 30.16 2.90
684 695 0.468226 GGTTGGTGAGTGGTGACTGA 59.532 55.000 0.00 0.00 30.16 3.41
685 696 0.535102 GGGTTGGTGAGTGGTGACTG 60.535 60.000 0.00 0.00 30.16 3.51
686 697 1.705997 GGGGTTGGTGAGTGGTGACT 61.706 60.000 0.00 0.00 33.98 3.41
687 698 1.228154 GGGGTTGGTGAGTGGTGAC 60.228 63.158 0.00 0.00 0.00 3.67
688 699 1.694525 TGGGGTTGGTGAGTGGTGA 60.695 57.895 0.00 0.00 0.00 4.02
689 700 1.528309 GTGGGGTTGGTGAGTGGTG 60.528 63.158 0.00 0.00 0.00 4.17
690 701 1.286305 AAGTGGGGTTGGTGAGTGGT 61.286 55.000 0.00 0.00 0.00 4.16
691 702 0.537371 GAAGTGGGGTTGGTGAGTGG 60.537 60.000 0.00 0.00 0.00 4.00
692 703 0.537371 GGAAGTGGGGTTGGTGAGTG 60.537 60.000 0.00 0.00 0.00 3.51
693 704 1.716028 GGGAAGTGGGGTTGGTGAGT 61.716 60.000 0.00 0.00 0.00 3.41
694 705 1.074951 GGGAAGTGGGGTTGGTGAG 59.925 63.158 0.00 0.00 0.00 3.51
695 706 0.104356 TAGGGAAGTGGGGTTGGTGA 60.104 55.000 0.00 0.00 0.00 4.02
696 707 0.328258 CTAGGGAAGTGGGGTTGGTG 59.672 60.000 0.00 0.00 0.00 4.17
697 708 0.195096 TCTAGGGAAGTGGGGTTGGT 59.805 55.000 0.00 0.00 0.00 3.67
698 709 1.596496 ATCTAGGGAAGTGGGGTTGG 58.404 55.000 0.00 0.00 0.00 3.77
699 710 2.104963 GCTATCTAGGGAAGTGGGGTTG 59.895 54.545 0.00 0.00 0.00 3.77
700 711 2.293586 TGCTATCTAGGGAAGTGGGGTT 60.294 50.000 0.00 0.00 0.00 4.11
701 712 1.294068 TGCTATCTAGGGAAGTGGGGT 59.706 52.381 0.00 0.00 0.00 4.95
702 713 1.974236 CTGCTATCTAGGGAAGTGGGG 59.026 57.143 0.00 0.00 0.00 4.96
703 714 1.974236 CCTGCTATCTAGGGAAGTGGG 59.026 57.143 0.00 0.00 0.00 4.61
704 715 1.346068 GCCTGCTATCTAGGGAAGTGG 59.654 57.143 0.00 0.00 35.80 4.00
705 716 2.036992 CAGCCTGCTATCTAGGGAAGTG 59.963 54.545 0.00 0.00 35.80 3.16
706 717 2.324541 CAGCCTGCTATCTAGGGAAGT 58.675 52.381 0.00 0.00 35.80 3.01
707 718 2.036992 CACAGCCTGCTATCTAGGGAAG 59.963 54.545 0.00 0.00 35.80 3.46
708 719 2.042464 CACAGCCTGCTATCTAGGGAA 58.958 52.381 0.00 0.00 35.80 3.97
709 720 1.709578 CACAGCCTGCTATCTAGGGA 58.290 55.000 0.00 0.00 35.80 4.20
710 721 0.683973 CCACAGCCTGCTATCTAGGG 59.316 60.000 0.00 0.00 35.80 3.53
711 722 1.418334 ACCACAGCCTGCTATCTAGG 58.582 55.000 0.00 0.00 38.39 3.02
712 723 2.029470 GCTACCACAGCCTGCTATCTAG 60.029 54.545 0.00 0.00 45.23 2.43
713 724 1.964223 GCTACCACAGCCTGCTATCTA 59.036 52.381 0.00 0.00 45.23 1.98
714 725 0.755686 GCTACCACAGCCTGCTATCT 59.244 55.000 0.00 0.00 45.23 1.98
715 726 3.297391 GCTACCACAGCCTGCTATC 57.703 57.895 0.00 0.00 45.23 2.08
724 735 6.430283 GATCTCTTGATTTGGGCTACCACAG 61.430 48.000 0.00 0.00 38.75 3.66
725 736 4.626287 GATCTCTTGATTTGGGCTACCACA 60.626 45.833 0.00 0.00 38.75 4.17
726 737 3.879892 GATCTCTTGATTTGGGCTACCAC 59.120 47.826 0.00 0.00 38.75 4.16
727 738 3.782523 AGATCTCTTGATTTGGGCTACCA 59.217 43.478 0.00 0.00 37.82 3.25
728 739 4.133078 CAGATCTCTTGATTTGGGCTACC 58.867 47.826 0.00 0.00 32.91 3.18
729 740 4.133078 CCAGATCTCTTGATTTGGGCTAC 58.867 47.826 7.47 0.00 45.80 3.58
730 741 4.428294 CCAGATCTCTTGATTTGGGCTA 57.572 45.455 7.47 0.00 45.80 3.93
731 742 3.294038 CCAGATCTCTTGATTTGGGCT 57.706 47.619 7.47 0.00 45.80 5.19
735 746 5.814188 TCGAACATCCAGATCTCTTGATTTG 59.186 40.000 0.00 0.00 35.36 2.32
736 747 5.982356 TCGAACATCCAGATCTCTTGATTT 58.018 37.500 0.00 0.00 32.19 2.17
737 748 5.604758 TCGAACATCCAGATCTCTTGATT 57.395 39.130 0.00 0.00 32.19 2.57
738 749 5.604758 TTCGAACATCCAGATCTCTTGAT 57.395 39.130 0.00 0.00 35.26 2.57
739 750 5.604758 ATTCGAACATCCAGATCTCTTGA 57.395 39.130 0.00 0.00 0.00 3.02
740 751 6.199908 GTGTATTCGAACATCCAGATCTCTTG 59.800 42.308 0.00 0.00 0.00 3.02
741 752 6.127338 TGTGTATTCGAACATCCAGATCTCTT 60.127 38.462 0.00 0.00 0.00 2.85
742 753 5.360999 TGTGTATTCGAACATCCAGATCTCT 59.639 40.000 0.00 0.00 0.00 3.10
743 754 5.592054 TGTGTATTCGAACATCCAGATCTC 58.408 41.667 0.00 0.00 0.00 2.75
744 755 5.598416 TGTGTATTCGAACATCCAGATCT 57.402 39.130 0.00 0.00 0.00 2.75
745 756 6.479990 TCAATGTGTATTCGAACATCCAGATC 59.520 38.462 0.00 0.00 35.99 2.75
746 757 6.258727 GTCAATGTGTATTCGAACATCCAGAT 59.741 38.462 0.00 0.00 35.99 2.90
747 758 5.580691 GTCAATGTGTATTCGAACATCCAGA 59.419 40.000 0.00 0.00 35.99 3.86
748 759 5.351189 TGTCAATGTGTATTCGAACATCCAG 59.649 40.000 0.00 0.00 35.99 3.86
749 760 5.241662 TGTCAATGTGTATTCGAACATCCA 58.758 37.500 0.00 0.00 35.99 3.41
750 761 5.220662 CCTGTCAATGTGTATTCGAACATCC 60.221 44.000 0.00 0.00 35.99 3.51
751 762 5.580691 TCCTGTCAATGTGTATTCGAACATC 59.419 40.000 0.00 0.00 35.99 3.06
752 763 5.487433 TCCTGTCAATGTGTATTCGAACAT 58.513 37.500 0.00 0.00 38.66 2.71
753 764 4.888917 TCCTGTCAATGTGTATTCGAACA 58.111 39.130 0.00 0.00 0.00 3.18
754 765 5.178623 TGTTCCTGTCAATGTGTATTCGAAC 59.821 40.000 0.00 0.00 0.00 3.95
755 766 5.178623 GTGTTCCTGTCAATGTGTATTCGAA 59.821 40.000 0.00 0.00 0.00 3.71
756 767 4.688879 GTGTTCCTGTCAATGTGTATTCGA 59.311 41.667 0.00 0.00 0.00 3.71
757 768 4.690748 AGTGTTCCTGTCAATGTGTATTCG 59.309 41.667 0.00 0.00 0.00 3.34
758 769 5.700832 TGAGTGTTCCTGTCAATGTGTATTC 59.299 40.000 0.00 0.00 0.00 1.75
759 770 5.620206 TGAGTGTTCCTGTCAATGTGTATT 58.380 37.500 0.00 0.00 0.00 1.89
760 771 5.227569 TGAGTGTTCCTGTCAATGTGTAT 57.772 39.130 0.00 0.00 0.00 2.29
761 772 4.681074 TGAGTGTTCCTGTCAATGTGTA 57.319 40.909 0.00 0.00 0.00 2.90
762 773 3.558931 TGAGTGTTCCTGTCAATGTGT 57.441 42.857 0.00 0.00 0.00 3.72
763 774 4.096231 TGTTTGAGTGTTCCTGTCAATGTG 59.904 41.667 0.00 0.00 30.50 3.21
764 775 4.269183 TGTTTGAGTGTTCCTGTCAATGT 58.731 39.130 0.00 0.00 30.50 2.71
765 776 4.898829 TGTTTGAGTGTTCCTGTCAATG 57.101 40.909 0.00 0.00 30.50 2.82
766 777 4.889409 ACATGTTTGAGTGTTCCTGTCAAT 59.111 37.500 0.00 0.00 30.50 2.57
767 778 4.269183 ACATGTTTGAGTGTTCCTGTCAA 58.731 39.130 0.00 0.00 0.00 3.18
768 779 3.876914 GACATGTTTGAGTGTTCCTGTCA 59.123 43.478 0.00 0.00 33.66 3.58
769 780 3.251004 GGACATGTTTGAGTGTTCCTGTC 59.749 47.826 0.00 0.00 0.00 3.51
770 781 3.214328 GGACATGTTTGAGTGTTCCTGT 58.786 45.455 0.00 0.00 0.00 4.00
771 782 3.213506 TGGACATGTTTGAGTGTTCCTG 58.786 45.455 0.00 0.00 0.00 3.86
772 783 3.576078 TGGACATGTTTGAGTGTTCCT 57.424 42.857 0.00 0.00 0.00 3.36
773 784 5.882557 AGATATGGACATGTTTGAGTGTTCC 59.117 40.000 0.00 0.00 0.00 3.62
774 785 6.992063 AGATATGGACATGTTTGAGTGTTC 57.008 37.500 0.00 0.00 0.00 3.18
775 786 7.765695 AAAGATATGGACATGTTTGAGTGTT 57.234 32.000 0.00 0.00 0.00 3.32
776 787 7.596494 CAAAAGATATGGACATGTTTGAGTGT 58.404 34.615 0.00 0.00 0.00 3.55
777 788 6.529125 GCAAAAGATATGGACATGTTTGAGTG 59.471 38.462 0.00 0.00 0.00 3.51
778 789 6.209192 TGCAAAAGATATGGACATGTTTGAGT 59.791 34.615 0.00 0.00 0.00 3.41
779 790 6.623486 TGCAAAAGATATGGACATGTTTGAG 58.377 36.000 0.00 0.00 0.00 3.02
780 791 6.587206 TGCAAAAGATATGGACATGTTTGA 57.413 33.333 0.00 0.00 0.00 2.69
781 792 7.332430 ACAATGCAAAAGATATGGACATGTTTG 59.668 33.333 0.00 0.00 0.00 2.93
782 793 7.388437 ACAATGCAAAAGATATGGACATGTTT 58.612 30.769 0.00 0.00 0.00 2.83
783 794 6.938507 ACAATGCAAAAGATATGGACATGTT 58.061 32.000 0.00 0.00 0.00 2.71
784 795 6.534475 ACAATGCAAAAGATATGGACATGT 57.466 33.333 0.00 0.00 0.00 3.21
785 796 9.537192 AATAACAATGCAAAAGATATGGACATG 57.463 29.630 0.00 0.00 0.00 3.21
805 816 9.719355 CCATGGTGCATAGTACTATAAATAACA 57.281 33.333 15.03 10.57 0.00 2.41
806 817 9.938280 TCCATGGTGCATAGTACTATAAATAAC 57.062 33.333 15.03 8.91 0.00 1.89
809 820 8.825774 TCATCCATGGTGCATAGTACTATAAAT 58.174 33.333 15.03 2.84 0.00 1.40
810 821 8.201242 TCATCCATGGTGCATAGTACTATAAA 57.799 34.615 15.03 4.04 0.00 1.40
811 822 7.790782 TCATCCATGGTGCATAGTACTATAA 57.209 36.000 15.03 4.39 0.00 0.98
812 823 7.093333 CCTTCATCCATGGTGCATAGTACTATA 60.093 40.741 15.03 0.00 0.00 1.31
813 824 6.296087 CCTTCATCCATGGTGCATAGTACTAT 60.296 42.308 12.58 9.71 0.00 2.12
814 825 5.012046 CCTTCATCCATGGTGCATAGTACTA 59.988 44.000 12.58 4.77 0.00 1.82
815 826 4.202398 CCTTCATCCATGGTGCATAGTACT 60.202 45.833 12.58 0.00 0.00 2.73
816 827 4.067896 CCTTCATCCATGGTGCATAGTAC 58.932 47.826 12.58 0.00 0.00 2.73
817 828 3.072915 CCCTTCATCCATGGTGCATAGTA 59.927 47.826 12.58 0.00 0.00 1.82
818 829 2.158564 CCCTTCATCCATGGTGCATAGT 60.159 50.000 12.58 0.00 0.00 2.12
819 830 2.107031 TCCCTTCATCCATGGTGCATAG 59.893 50.000 12.58 4.35 0.00 2.23
820 831 2.134354 TCCCTTCATCCATGGTGCATA 58.866 47.619 12.58 0.00 0.00 3.14
821 832 0.928505 TCCCTTCATCCATGGTGCAT 59.071 50.000 12.58 0.00 0.00 3.96
822 833 0.703488 TTCCCTTCATCCATGGTGCA 59.297 50.000 12.58 0.00 0.00 4.57
823 834 1.106285 GTTCCCTTCATCCATGGTGC 58.894 55.000 12.58 0.00 0.00 5.01
824 835 2.493278 GTTGTTCCCTTCATCCATGGTG 59.507 50.000 12.58 9.69 0.00 4.17
825 836 2.557452 GGTTGTTCCCTTCATCCATGGT 60.557 50.000 12.58 0.00 0.00 3.55
826 837 2.102578 GGTTGTTCCCTTCATCCATGG 58.897 52.381 4.97 4.97 0.00 3.66
827 838 2.756760 CAGGTTGTTCCCTTCATCCATG 59.243 50.000 0.00 0.00 36.75 3.66
828 839 2.885554 GCAGGTTGTTCCCTTCATCCAT 60.886 50.000 0.00 0.00 36.75 3.41
829 840 1.547675 GCAGGTTGTTCCCTTCATCCA 60.548 52.381 0.00 0.00 36.75 3.41
830 841 1.177401 GCAGGTTGTTCCCTTCATCC 58.823 55.000 0.00 0.00 36.75 3.51
831 842 0.804989 CGCAGGTTGTTCCCTTCATC 59.195 55.000 0.00 0.00 36.75 2.92
832 843 2.946947 CGCAGGTTGTTCCCTTCAT 58.053 52.632 0.00 0.00 36.75 2.57
833 844 4.473643 CGCAGGTTGTTCCCTTCA 57.526 55.556 0.00 0.00 36.75 3.02
852 863 6.034591 CACTGTCGTATCTTACCGATTTCTT 58.965 40.000 0.00 0.00 35.30 2.52
854 865 4.206609 GCACTGTCGTATCTTACCGATTTC 59.793 45.833 0.00 0.00 35.30 2.17
859 870 2.554806 TGCACTGTCGTATCTTACCG 57.445 50.000 0.00 0.00 0.00 4.02
861 872 4.607955 TGCTATGCACTGTCGTATCTTAC 58.392 43.478 0.00 0.00 31.71 2.34
873 884 2.503061 CTCCGGCTGCTATGCACT 59.497 61.111 0.00 0.00 33.79 4.40
878 889 3.147595 TCACGCTCCGGCTGCTAT 61.148 61.111 15.35 3.20 36.09 2.97
888 899 0.036388 TCAGGGATTTGGTCACGCTC 60.036 55.000 0.00 0.00 34.56 5.03
898 909 0.981183 TACTGTGGCGTCAGGGATTT 59.019 50.000 12.68 0.00 39.48 2.17
901 912 2.280552 GGTACTGTGGCGTCAGGGA 61.281 63.158 12.68 0.00 39.48 4.20
917 928 2.083628 ATACTACAGCTTAGCGGGGT 57.916 50.000 9.40 9.40 0.00 4.95
921 932 6.924060 ACCTTCATTTATACTACAGCTTAGCG 59.076 38.462 0.00 0.00 0.00 4.26
926 937 6.808321 TCCACCTTCATTTATACTACAGCT 57.192 37.500 0.00 0.00 0.00 4.24
927 938 6.483640 CCTTCCACCTTCATTTATACTACAGC 59.516 42.308 0.00 0.00 0.00 4.40
928 939 7.495934 CACCTTCCACCTTCATTTATACTACAG 59.504 40.741 0.00 0.00 0.00 2.74
929 940 7.335627 CACCTTCCACCTTCATTTATACTACA 58.664 38.462 0.00 0.00 0.00 2.74
930 941 6.260271 GCACCTTCCACCTTCATTTATACTAC 59.740 42.308 0.00 0.00 0.00 2.73
931 942 6.069905 TGCACCTTCCACCTTCATTTATACTA 60.070 38.462 0.00 0.00 0.00 1.82
932 943 5.193679 GCACCTTCCACCTTCATTTATACT 58.806 41.667 0.00 0.00 0.00 2.12
933 944 4.947388 TGCACCTTCCACCTTCATTTATAC 59.053 41.667 0.00 0.00 0.00 1.47
941 952 1.973812 GCCTGCACCTTCCACCTTC 60.974 63.158 0.00 0.00 0.00 3.46
955 966 0.248843 GAGTGAAGTGGAGAGGCCTG 59.751 60.000 12.00 0.00 37.63 4.85
957 968 0.687354 TTGAGTGAAGTGGAGAGGCC 59.313 55.000 0.00 0.00 37.10 5.19
958 969 1.802069 GTTGAGTGAAGTGGAGAGGC 58.198 55.000 0.00 0.00 0.00 4.70
963 974 5.642063 GGATAAAATCGTTGAGTGAAGTGGA 59.358 40.000 0.00 0.00 0.00 4.02
967 978 8.664798 TGTAATGGATAAAATCGTTGAGTGAAG 58.335 33.333 0.00 0.00 0.00 3.02
978 989 6.449698 CATGGCCACTGTAATGGATAAAATC 58.550 40.000 8.16 0.00 43.02 2.17
981 992 4.214310 CCATGGCCACTGTAATGGATAAA 58.786 43.478 8.16 0.00 43.02 1.40
983 994 2.488891 GCCATGGCCACTGTAATGGATA 60.489 50.000 27.24 0.00 43.02 2.59
989 1000 1.255882 CTTTGCCATGGCCACTGTAA 58.744 50.000 33.44 17.23 41.09 2.41
999 1010 2.821969 ACTGGAAACTAGCTTTGCCATG 59.178 45.455 0.00 0.00 29.15 3.66
1000 1011 3.160679 ACTGGAAACTAGCTTTGCCAT 57.839 42.857 0.00 0.00 29.15 4.40
1001 1012 2.656947 ACTGGAAACTAGCTTTGCCA 57.343 45.000 0.00 0.00 29.15 4.92
1003 1014 2.884639 TGGAACTGGAAACTAGCTTTGC 59.115 45.455 0.00 0.00 0.00 3.68
1004 1015 4.756084 CTGGAACTGGAAACTAGCTTTG 57.244 45.455 0.00 0.00 0.00 2.77
1020 1031 4.250699 CAGGTTCCCTCCCTGGAA 57.749 61.111 0.00 0.00 44.77 3.53
1026 1037 0.967380 CATTGCCACAGGTTCCCTCC 60.967 60.000 0.00 0.00 0.00 4.30
1027 1038 0.967380 CCATTGCCACAGGTTCCCTC 60.967 60.000 0.00 0.00 0.00 4.30
1028 1039 1.077265 CCATTGCCACAGGTTCCCT 59.923 57.895 0.00 0.00 0.00 4.20
1029 1040 2.649129 GCCATTGCCACAGGTTCCC 61.649 63.158 0.00 0.00 0.00 3.97
1179 1205 0.664767 GGATGAGCGCGACTATGTCC 60.665 60.000 12.10 10.80 0.00 4.02
1185 1211 3.381983 TGGTGGATGAGCGCGACT 61.382 61.111 12.10 6.51 0.00 4.18
1550 1766 0.883833 GGGTCTCAGTTTGGTGCATG 59.116 55.000 0.00 0.00 0.00 4.06
1703 1975 4.280174 TCCCTCCGTTCTATAATGTAGTGC 59.720 45.833 0.00 0.00 0.00 4.40
1715 1987 1.617357 GTGTTGTACTCCCTCCGTTCT 59.383 52.381 0.00 0.00 0.00 3.01
1745 2021 2.294074 TGCCAAGCGTGTAAGTTTCTT 58.706 42.857 0.00 0.00 0.00 2.52
1751 2027 0.447801 GTGGATGCCAAGCGTGTAAG 59.552 55.000 0.00 0.00 34.18 2.34
1772 2048 4.104102 ACCAGTTTCTTGAGTTCACCCATA 59.896 41.667 0.00 0.00 0.00 2.74
1840 2117 1.810532 GCTCTTCGGATGGTCGACT 59.189 57.895 16.46 0.00 39.01 4.18
1883 2160 0.251209 ACGACCACTCTAGCTGGACA 60.251 55.000 12.06 0.00 32.55 4.02
1928 2205 8.550710 AAAATGTACGTACCTGCAAGTTTATA 57.449 30.769 22.43 0.00 0.00 0.98
1968 2252 5.279406 GGAACCAAAAATGACCATGACATGA 60.279 40.000 17.24 0.00 0.00 3.07
1976 2260 4.083217 CGATTACGGAACCAAAAATGACCA 60.083 41.667 0.00 0.00 35.72 4.02
1991 2275 5.121768 AGGAACAAAATTCAGACGATTACGG 59.878 40.000 0.00 0.00 44.46 4.02
1993 2277 5.795441 GCAGGAACAAAATTCAGACGATTAC 59.205 40.000 0.00 0.00 0.00 1.89
1994 2278 5.705441 AGCAGGAACAAAATTCAGACGATTA 59.295 36.000 0.00 0.00 0.00 1.75
2001 2285 3.904136 ACGAGCAGGAACAAAATTCAG 57.096 42.857 0.00 0.00 0.00 3.02
2020 2304 9.740710 AATGCCAAGTTCCCTAAGATTATATAC 57.259 33.333 0.00 0.00 0.00 1.47
2021 2305 9.739276 CAATGCCAAGTTCCCTAAGATTATATA 57.261 33.333 0.00 0.00 0.00 0.86
2022 2306 7.671398 CCAATGCCAAGTTCCCTAAGATTATAT 59.329 37.037 0.00 0.00 0.00 0.86
2023 2307 7.004086 CCAATGCCAAGTTCCCTAAGATTATA 58.996 38.462 0.00 0.00 0.00 0.98
2031 2315 3.756082 ATTCCAATGCCAAGTTCCCTA 57.244 42.857 0.00 0.00 0.00 3.53
2064 2348 2.852075 AACCCTCTGCCCAACGGA 60.852 61.111 0.00 0.00 0.00 4.69
2093 2377 1.891919 GTGTCGACCAGCTTTGGCA 60.892 57.895 14.12 0.00 41.70 4.92
2569 2858 0.326048 ACATGGGAGGGGTCTCAGAG 60.326 60.000 0.00 0.00 41.69 3.35
2612 2901 6.007703 TCTTTATTCCAGTTCCCACGAAAAT 58.992 36.000 0.00 0.00 0.00 1.82
2651 2940 8.195436 CACCTTCGAGTGGTAGAAGAAATTATA 58.805 37.037 11.11 0.00 44.76 0.98
2652 2941 7.042335 CACCTTCGAGTGGTAGAAGAAATTAT 58.958 38.462 11.11 0.00 44.76 1.28
2709 3277 6.280643 CGGGATACAACATGATTAGTCAAGA 58.719 40.000 0.00 0.00 36.51 3.02
2715 3283 4.617253 TCCCGGGATACAACATGATTAG 57.383 45.455 22.63 0.00 39.74 1.73
2741 3309 5.103982 AGTCCATTCATACATGGGATCACAA 60.104 40.000 0.00 0.00 43.74 3.33
2816 3388 2.637382 AGGCCCTTTTACAACAAATGGG 59.363 45.455 13.64 13.64 43.63 4.00
2826 3398 1.616865 GTTGTCCCAAGGCCCTTTTAC 59.383 52.381 0.00 0.00 0.00 2.01
2827 3399 1.481615 GGTTGTCCCAAGGCCCTTTTA 60.482 52.381 0.00 0.00 0.00 1.52
2837 3409 3.961414 GCCTCCCGGTTGTCCCAA 61.961 66.667 0.00 0.00 0.00 4.12
2847 3419 1.815421 CATTCGGACTTGCCTCCCG 60.815 63.158 0.00 0.00 44.22 5.14
2893 3465 4.992951 AGTAACTGTGTGGTTCGGATAAAC 59.007 41.667 0.00 0.00 0.00 2.01
2908 3480 7.055667 TCTTCAACAATCTCAGAGTAACTGT 57.944 36.000 0.00 0.00 45.86 3.55
2914 3486 7.628234 ACCAATATCTTCAACAATCTCAGAGT 58.372 34.615 0.00 0.00 0.00 3.24
2945 3517 5.188555 TGAACTGGATGAGAGATTACAAGCT 59.811 40.000 0.00 0.00 0.00 3.74
2953 3525 5.511386 AAAAGGTGAACTGGATGAGAGAT 57.489 39.130 0.00 0.00 0.00 2.75
3001 3573 8.824756 TCACTCTTCTTCTATGTTACTGGTAT 57.175 34.615 0.00 0.00 0.00 2.73
3037 3609 3.317711 TGTTGGGCTTTGTATCAGTTGTG 59.682 43.478 0.00 0.00 0.00 3.33
3051 3624 2.123468 GTGGTGGGTTGTTGGGCT 60.123 61.111 0.00 0.00 0.00 5.19
3060 3633 3.816090 GTGGTGGGTGTGGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
3062 3635 0.758685 AATTGTGGTGGGTGTGGTGG 60.759 55.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.