Multiple sequence alignment - TraesCS5A01G330800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G330800 chr5A 100.000 6602 0 0 1 6602 540280178 540273577 0.000000e+00 12192.0
1 TraesCS5A01G330800 chr5A 95.186 914 28 4 1427 2324 503779743 503778830 0.000000e+00 1430.0
2 TraesCS5A01G330800 chr5A 95.082 915 29 7 1426 2324 489919911 489920825 0.000000e+00 1426.0
3 TraesCS5A01G330800 chr5A 83.150 635 66 20 1428 2049 448308870 448308264 5.820000e-150 542.0
4 TraesCS5A01G330800 chr5A 84.165 581 53 18 1427 1994 705762530 705763084 1.630000e-145 527.0
5 TraesCS5A01G330800 chr5A 93.846 325 17 3 2002 2324 705763261 705763584 2.770000e-133 486.0
6 TraesCS5A01G330800 chr5A 93.210 324 21 1 2002 2324 657284285 657283962 5.990000e-130 475.0
7 TraesCS5A01G330800 chr5A 90.120 334 26 5 1662 1993 623557844 623558172 1.700000e-115 427.0
8 TraesCS5A01G330800 chr5B 93.707 3464 159 32 2325 5763 515401664 515398235 0.000000e+00 5134.0
9 TraesCS5A01G330800 chr5B 89.394 660 27 5 5813 6452 515398234 515397598 0.000000e+00 791.0
10 TraesCS5A01G330800 chr5B 89.211 380 17 10 924 1279 515402172 515401793 2.810000e-123 453.0
11 TraesCS5A01G330800 chr5B 96.491 114 4 0 6485 6598 515397593 515397480 8.740000e-44 189.0
12 TraesCS5A01G330800 chr5D 94.118 3026 115 15 3418 6403 425996907 425993905 0.000000e+00 4543.0
13 TraesCS5A01G330800 chr5D 87.204 633 70 9 3 632 425999139 425998515 0.000000e+00 710.0
14 TraesCS5A01G330800 chr5D 93.096 478 19 3 2325 2796 425997844 425997375 0.000000e+00 688.0
15 TraesCS5A01G330800 chr5D 87.967 482 18 12 838 1279 425998454 425997973 3.500000e-147 532.0
16 TraesCS5A01G330800 chr5D 78.797 316 56 9 480 787 351801847 351801535 1.120000e-47 202.0
17 TraesCS5A01G330800 chr5D 78.947 304 55 8 488 786 88468005 88467706 1.450000e-46 198.0
18 TraesCS5A01G330800 chr5D 84.211 76 10 2 3349 3423 425997336 425997262 9.180000e-09 73.1
19 TraesCS5A01G330800 chr4D 87.892 2552 219 59 3350 5858 465562836 465560332 0.000000e+00 2918.0
20 TraesCS5A01G330800 chr4D 87.677 495 59 2 2388 2881 465563535 465563042 5.740000e-160 575.0
21 TraesCS5A01G330800 chr4D 85.366 533 58 7 5250 5762 465415340 465414808 9.740000e-148 534.0
22 TraesCS5A01G330800 chr4D 84.586 266 32 8 3039 3300 3006447 3006707 8.500000e-64 255.0
23 TraesCS5A01G330800 chr4D 79.085 306 52 10 488 785 62483482 62483783 4.040000e-47 200.0
24 TraesCS5A01G330800 chr4D 92.241 116 8 1 992 1106 465563894 465563779 5.300000e-36 163.0
25 TraesCS5A01G330800 chr4D 88.889 135 8 3 2906 3040 465563052 465562925 6.850000e-35 159.0
26 TraesCS5A01G330800 chr4A 87.361 2524 256 32 3349 5862 4868655 4871125 0.000000e+00 2835.0
27 TraesCS5A01G330800 chr4A 98.000 900 16 2 1426 2324 620982346 620981448 0.000000e+00 1561.0
28 TraesCS5A01G330800 chr4A 85.052 582 44 21 1428 1994 532213610 532214163 2.690000e-153 553.0
29 TraesCS5A01G330800 chr4A 84.222 469 65 7 2416 2878 4867883 4868348 1.310000e-121 448.0
30 TraesCS5A01G330800 chr4A 84.977 213 24 5 5554 5759 5020192 5020403 6.710000e-50 209.0
31 TraesCS5A01G330800 chr4A 90.517 116 10 1 992 1106 4867483 4867598 1.150000e-32 152.0
32 TraesCS5A01G330800 chr4A 77.432 257 48 6 6070 6324 5020529 5020777 1.920000e-30 145.0
33 TraesCS5A01G330800 chr4A 92.308 52 4 0 3298 3349 4868564 4868615 2.550000e-09 75.0
34 TraesCS5A01G330800 chr4A 87.273 55 4 2 2912 2963 4868347 4868401 7.150000e-05 60.2
35 TraesCS5A01G330800 chr4B 87.030 2236 207 50 3653 5853 582360770 582358583 0.000000e+00 2446.0
36 TraesCS5A01G330800 chr4B 89.247 465 47 3 2418 2881 582362041 582361579 4.440000e-161 579.0
37 TraesCS5A01G330800 chr4B 84.734 583 46 24 1427 1994 665798988 665799542 1.620000e-150 544.0
38 TraesCS5A01G330800 chr4B 93.091 275 16 3 3381 3654 582361292 582361020 3.710000e-107 399.0
39 TraesCS5A01G330800 chr4B 83.113 302 41 8 5469 5762 582157810 582157511 3.920000e-67 267.0
40 TraesCS5A01G330800 chr4B 83.212 274 37 8 3039 3308 171657277 171657545 6.610000e-60 243.0
41 TraesCS5A01G330800 chr4B 87.143 140 16 2 969 1106 582362608 582362469 2.460000e-34 158.0
42 TraesCS5A01G330800 chr4B 94.231 52 3 0 3298 3349 582361413 582361362 5.490000e-11 80.5
43 TraesCS5A01G330800 chr4B 100.000 41 0 0 2912 2952 582361583 582361543 7.100000e-10 76.8
44 TraesCS5A01G330800 chr6A 98.444 900 12 2 1427 2324 583284260 583283361 0.000000e+00 1583.0
45 TraesCS5A01G330800 chr6A 94.530 914 34 7 1427 2324 97612058 97612971 0.000000e+00 1397.0
46 TraesCS5A01G330800 chr6A 93.252 326 20 2 2002 2325 596518624 596518949 4.630000e-131 479.0
47 TraesCS5A01G330800 chr6A 84.270 267 33 8 3038 3300 596891831 596891570 1.100000e-62 252.0
48 TraesCS5A01G330800 chr6A 82.857 280 37 10 3036 3310 486271784 486271511 2.380000e-59 241.0
49 TraesCS5A01G330800 chr2A 94.760 916 32 4 1427 2326 433358637 433357722 0.000000e+00 1411.0
50 TraesCS5A01G330800 chr2A 83.904 584 50 22 1426 1994 709838717 709839271 9.810000e-143 518.0
51 TraesCS5A01G330800 chr2A 84.133 271 38 5 3039 3307 265273263 265273530 2.360000e-64 257.0
52 TraesCS5A01G330800 chr7D 85.864 573 44 22 1427 1993 410512529 410513070 5.740000e-160 575.0
53 TraesCS5A01G330800 chr7D 83.505 582 53 25 1427 1993 474008472 474007919 2.750000e-138 503.0
54 TraesCS5A01G330800 chr7D 83.883 273 35 8 3039 3307 374239918 374240185 1.100000e-62 252.0
55 TraesCS5A01G330800 chr7D 83.764 271 34 9 3038 3304 516421906 516422170 1.420000e-61 248.0
56 TraesCS5A01G330800 chr7A 89.884 346 28 5 1662 2005 2686822 2686482 7.860000e-119 438.0
57 TraesCS5A01G330800 chr7A 79.016 305 56 6 488 786 223684589 223684287 1.120000e-47 202.0
58 TraesCS5A01G330800 chr1A 87.027 370 34 9 1629 1994 57750744 57751103 7.970000e-109 405.0
59 TraesCS5A01G330800 chr1A 79.538 303 53 6 493 788 12931556 12931856 2.410000e-49 207.0
60 TraesCS5A01G330800 chr3D 79.227 621 86 27 1428 2040 453226587 453227172 6.210000e-105 392.0
61 TraesCS5A01G330800 chr7B 84.015 269 34 8 3036 3300 158072619 158072882 3.950000e-62 250.0
62 TraesCS5A01G330800 chr6B 84.211 266 33 8 3039 3300 2044108 2044368 3.950000e-62 250.0
63 TraesCS5A01G330800 chr3B 83.274 281 37 9 3039 3314 49226695 49226420 3.950000e-62 250.0
64 TraesCS5A01G330800 chr3B 83.835 266 34 8 3039 3300 175775382 175775642 1.840000e-60 244.0
65 TraesCS5A01G330800 chr3B 78.176 307 59 8 496 798 64600137 64600439 8.740000e-44 189.0
66 TraesCS5A01G330800 chr2B 75.154 648 96 33 1429 2056 659657266 659656664 1.840000e-60 244.0
67 TraesCS5A01G330800 chr6D 80.921 304 49 6 489 786 18495598 18495298 1.430000e-56 231.0
68 TraesCS5A01G330800 chrUn 79.344 305 54 7 489 786 17264772 17264470 8.680000e-49 206.0
69 TraesCS5A01G330800 chr3A 79.167 288 50 8 508 788 623615000 623614716 2.430000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G330800 chr5A 540273577 540280178 6601 True 12192.000000 12192 100.000000 1 6602 1 chr5A.!!$R3 6601
1 TraesCS5A01G330800 chr5A 503778830 503779743 913 True 1430.000000 1430 95.186000 1427 2324 1 chr5A.!!$R2 897
2 TraesCS5A01G330800 chr5A 489919911 489920825 914 False 1426.000000 1426 95.082000 1426 2324 1 chr5A.!!$F1 898
3 TraesCS5A01G330800 chr5A 448308264 448308870 606 True 542.000000 542 83.150000 1428 2049 1 chr5A.!!$R1 621
4 TraesCS5A01G330800 chr5A 705762530 705763584 1054 False 506.500000 527 89.005500 1427 2324 2 chr5A.!!$F3 897
5 TraesCS5A01G330800 chr5B 515397480 515402172 4692 True 1641.750000 5134 92.200750 924 6598 4 chr5B.!!$R1 5674
6 TraesCS5A01G330800 chr5D 425993905 425999139 5234 True 1309.220000 4543 89.319200 3 6403 5 chr5D.!!$R3 6400
7 TraesCS5A01G330800 chr4D 465560332 465563894 3562 True 953.750000 2918 89.174750 992 5858 4 chr4D.!!$R2 4866
8 TraesCS5A01G330800 chr4D 465414808 465415340 532 True 534.000000 534 85.366000 5250 5762 1 chr4D.!!$R1 512
9 TraesCS5A01G330800 chr4A 620981448 620982346 898 True 1561.000000 1561 98.000000 1426 2324 1 chr4A.!!$R1 898
10 TraesCS5A01G330800 chr4A 4867483 4871125 3642 False 714.040000 2835 88.336200 992 5862 5 chr4A.!!$F2 4870
11 TraesCS5A01G330800 chr4A 532213610 532214163 553 False 553.000000 553 85.052000 1428 1994 1 chr4A.!!$F1 566
12 TraesCS5A01G330800 chr4B 582358583 582362608 4025 True 623.216667 2446 91.790333 969 5853 6 chr4B.!!$R2 4884
13 TraesCS5A01G330800 chr4B 665798988 665799542 554 False 544.000000 544 84.734000 1427 1994 1 chr4B.!!$F2 567
14 TraesCS5A01G330800 chr6A 583283361 583284260 899 True 1583.000000 1583 98.444000 1427 2324 1 chr6A.!!$R2 897
15 TraesCS5A01G330800 chr6A 97612058 97612971 913 False 1397.000000 1397 94.530000 1427 2324 1 chr6A.!!$F1 897
16 TraesCS5A01G330800 chr2A 433357722 433358637 915 True 1411.000000 1411 94.760000 1427 2326 1 chr2A.!!$R1 899
17 TraesCS5A01G330800 chr2A 709838717 709839271 554 False 518.000000 518 83.904000 1426 1994 1 chr2A.!!$F2 568
18 TraesCS5A01G330800 chr7D 410512529 410513070 541 False 575.000000 575 85.864000 1427 1993 1 chr7D.!!$F2 566
19 TraesCS5A01G330800 chr7D 474007919 474008472 553 True 503.000000 503 83.505000 1427 1993 1 chr7D.!!$R1 566
20 TraesCS5A01G330800 chr3D 453226587 453227172 585 False 392.000000 392 79.227000 1428 2040 1 chr3D.!!$F1 612
21 TraesCS5A01G330800 chr2B 659656664 659657266 602 True 244.000000 244 75.154000 1429 2056 1 chr2B.!!$R1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 727 0.249398 GGATAGGGTCTGCGTGTGTT 59.751 55.0 0.00 0.0 0.00 3.32 F
1136 1174 0.250234 CTCCCAAATCCGCAGTCTCA 59.750 55.0 0.00 0.0 0.00 3.27 F
2384 2854 0.177373 CTACACCTTAAGGGACGGGC 59.823 60.0 25.31 0.0 40.27 6.13 F
2385 2855 1.266867 TACACCTTAAGGGACGGGCC 61.267 60.0 25.31 0.0 40.27 5.80 F
3644 4684 1.890876 ACGCTCTAACCATGTTTGCA 58.109 45.0 0.00 0.0 0.00 4.08 F
3945 5250 2.220653 TTTCCATCCTGCTTCCTTGG 57.779 50.0 0.00 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2361 2831 1.136500 CGTCCCTTAAGGTGTAGGAGC 59.864 57.143 20.22 4.56 36.75 4.70 R
2503 2974 2.615447 CTCATGGATGTGAATTGACGGG 59.385 50.000 0.00 0.00 0.00 5.28 R
3945 5250 0.445436 CTCACCTCATGTTTCTGCGC 59.555 55.000 0.00 0.00 0.00 6.09 R
3948 5253 3.374367 CAGATGCTCACCTCATGTTTCTG 59.626 47.826 0.00 0.00 0.00 3.02 R
4592 5912 2.223735 ACAGATATACCAGAACGCACGG 60.224 50.000 0.00 0.00 0.00 4.94 R
5811 7180 0.956633 TTCTGCTACGACGAACACCT 59.043 50.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.937436 ACCATAATAAGGGTTTCTTTAGCG 57.063 37.500 0.00 0.00 35.94 4.26
31 32 3.775261 AAGGGTTTCTTTAGCGTGGTA 57.225 42.857 0.00 0.00 29.99 3.25
33 34 3.606687 AGGGTTTCTTTAGCGTGGTATG 58.393 45.455 0.00 0.00 0.00 2.39
34 35 3.008704 AGGGTTTCTTTAGCGTGGTATGT 59.991 43.478 0.00 0.00 0.00 2.29
57 58 8.423906 TGTAGAGACTTTTCAGGTCTATTCTT 57.576 34.615 0.00 0.00 43.13 2.52
84 85 4.871822 TCCTCTGTCATCAAGATACCAGA 58.128 43.478 9.25 9.25 0.00 3.86
86 87 6.614657 TCCTCTGTCATCAAGATACCAGATA 58.385 40.000 9.78 2.55 31.00 1.98
87 88 7.244558 TCCTCTGTCATCAAGATACCAGATAT 58.755 38.462 9.78 0.00 31.00 1.63
88 89 7.732140 TCCTCTGTCATCAAGATACCAGATATT 59.268 37.037 9.78 0.00 31.00 1.28
89 90 9.029368 CCTCTGTCATCAAGATACCAGATATTA 57.971 37.037 9.78 0.00 31.00 0.98
109 110 2.871096 ATTACACACCCCACGACATT 57.129 45.000 0.00 0.00 0.00 2.71
114 115 2.105134 ACACACCCCACGACATTAAAGA 59.895 45.455 0.00 0.00 0.00 2.52
147 148 0.466922 AGAGGCACTTGCACTTGCTT 60.467 50.000 16.31 10.32 41.55 3.91
162 163 6.030228 GCACTTGCTTTGGACTTATCATTAC 58.970 40.000 0.00 0.00 38.21 1.89
164 165 6.150976 CACTTGCTTTGGACTTATCATTACCA 59.849 38.462 0.00 0.00 0.00 3.25
182 183 3.693807 ACCACATGTGATCATTGCTTCT 58.306 40.909 27.46 0.00 31.15 2.85
205 206 1.072173 CTGTCAAGGTGTGGTCCATGA 59.928 52.381 0.00 0.00 33.63 3.07
223 224 7.390440 GGTCCATGATATCAATCGGTAAATTGA 59.610 37.037 9.99 2.13 46.60 2.57
236 237 4.597079 GGTAAATTGATGGTGTGTATGCG 58.403 43.478 0.00 0.00 0.00 4.73
241 242 1.134431 TGATGGTGTGTATGCGAGCAT 60.134 47.619 15.28 15.28 40.19 3.79
257 258 2.983136 GAGCATCGTCATGGAGATAACG 59.017 50.000 0.00 0.00 36.50 3.18
258 259 2.061773 GCATCGTCATGGAGATAACGG 58.938 52.381 2.98 0.00 35.89 4.44
259 260 2.288213 GCATCGTCATGGAGATAACGGA 60.288 50.000 2.98 0.00 35.89 4.69
265 266 4.215613 CGTCATGGAGATAACGGAGACATA 59.784 45.833 0.00 0.00 0.00 2.29
296 297 9.010029 TCTTTTAACCATTGTACCTTCATCTTC 57.990 33.333 0.00 0.00 0.00 2.87
310 311 6.045955 CCTTCATCTTCAAGGTTAGAGCTAC 58.954 44.000 0.00 0.00 36.40 3.58
320 321 6.013725 TCAAGGTTAGAGCTACCAATCTCAAA 60.014 38.462 6.91 0.00 38.16 2.69
325 326 1.635487 AGCTACCAATCTCAAAGCCCA 59.365 47.619 0.00 0.00 33.63 5.36
327 328 2.360165 GCTACCAATCTCAAAGCCCATG 59.640 50.000 0.00 0.00 0.00 3.66
338 339 4.386413 GCCCATGGCCTCGATAAG 57.614 61.111 6.09 0.00 44.06 1.73
339 340 1.968540 GCCCATGGCCTCGATAAGC 60.969 63.158 6.09 0.00 44.06 3.09
343 344 1.544093 CCATGGCCTCGATAAGCATGT 60.544 52.381 3.32 0.00 0.00 3.21
348 349 2.945668 GGCCTCGATAAGCATGTTTTCT 59.054 45.455 0.00 0.00 0.00 2.52
349 350 3.242870 GGCCTCGATAAGCATGTTTTCTG 60.243 47.826 0.00 0.00 0.00 3.02
353 354 5.352569 CCTCGATAAGCATGTTTTCTGTCTT 59.647 40.000 0.00 0.00 0.00 3.01
354 355 6.128172 CCTCGATAAGCATGTTTTCTGTCTTT 60.128 38.462 0.00 0.00 0.00 2.52
374 375 5.989168 TCTTTATTATAGGCGTCATGTGTGG 59.011 40.000 0.00 0.00 0.00 4.17
375 376 1.948104 TTATAGGCGTCATGTGTGGC 58.052 50.000 0.00 0.00 0.00 5.01
387 388 2.373335 TGTGTGGCTGTTAAACCCAT 57.627 45.000 0.00 0.00 0.00 4.00
397 398 4.943705 GCTGTTAAACCCATCAGATCTTCA 59.056 41.667 0.00 0.00 0.00 3.02
406 407 5.222007 ACCCATCAGATCTTCATTGTATCCC 60.222 44.000 0.00 0.00 0.00 3.85
407 408 5.221986 CCCATCAGATCTTCATTGTATCCCA 60.222 44.000 0.00 0.00 0.00 4.37
408 409 5.938710 CCATCAGATCTTCATTGTATCCCAG 59.061 44.000 0.00 0.00 0.00 4.45
410 411 7.256439 CCATCAGATCTTCATTGTATCCCAGTA 60.256 40.741 0.00 0.00 0.00 2.74
413 414 8.717717 TCAGATCTTCATTGTATCCCAGTAAAT 58.282 33.333 0.00 0.00 0.00 1.40
441 442 7.273815 TCGTTGAATAAAAAGTGTGTTTGGTTC 59.726 33.333 0.00 0.00 0.00 3.62
458 460 8.671028 TGTTTGGTTCTAAACAAAGTAAGACTC 58.329 33.333 6.17 0.00 44.84 3.36
459 461 7.473027 TTGGTTCTAAACAAAGTAAGACTCG 57.527 36.000 0.00 0.00 0.00 4.18
470 472 2.087646 GTAAGACTCGTCGTTACCCCT 58.912 52.381 0.00 0.00 34.09 4.79
476 479 4.221482 AGACTCGTCGTTACCCCTAAAAAT 59.779 41.667 0.00 0.00 34.09 1.82
487 490 3.081804 CCCCTAAAAATGCAAGACTCGT 58.918 45.455 0.00 0.00 0.00 4.18
491 494 0.944386 AAAATGCAAGACTCGTGCGT 59.056 45.000 11.65 8.89 45.27 5.24
493 496 1.068474 AATGCAAGACTCGTGCGTAC 58.932 50.000 11.48 0.00 45.27 3.67
521 524 5.455326 CCTGTAATTGGATGGTTAGGAGGAG 60.455 48.000 0.00 0.00 0.00 3.69
528 531 3.323403 GGATGGTTAGGAGGAGAGTGATG 59.677 52.174 0.00 0.00 0.00 3.07
541 544 2.204136 TGATGTCCCAGCCCACCT 60.204 61.111 0.00 0.00 0.00 4.00
542 545 2.273449 GATGTCCCAGCCCACCTG 59.727 66.667 0.00 0.00 41.41 4.00
543 546 2.532715 ATGTCCCAGCCCACCTGT 60.533 61.111 0.00 0.00 40.06 4.00
545 548 3.570212 GTCCCAGCCCACCTGTGT 61.570 66.667 0.00 0.00 40.06 3.72
555 558 2.751816 GCCCACCTGTGTTTTAAGTCCT 60.752 50.000 0.00 0.00 0.00 3.85
557 560 2.884639 CCACCTGTGTTTTAAGTCCTGG 59.115 50.000 0.00 0.00 0.00 4.45
580 583 5.343249 GTGCTCGCATTATTTCTGGATTTT 58.657 37.500 0.00 0.00 0.00 1.82
603 606 6.855763 TTTTTAGGATTTGCAGTGATGGAT 57.144 33.333 0.00 0.00 0.00 3.41
607 610 8.537728 TTTAGGATTTGCAGTGATGGATATTT 57.462 30.769 0.00 0.00 0.00 1.40
619 622 5.544176 GTGATGGATATTTAGTGGGAGGAGA 59.456 44.000 0.00 0.00 0.00 3.71
625 628 2.599408 TTAGTGGGAGGAGACGTTCT 57.401 50.000 0.00 0.00 0.00 3.01
626 629 2.125773 TAGTGGGAGGAGACGTTCTC 57.874 55.000 0.00 0.00 42.66 2.87
627 630 0.961358 AGTGGGAGGAGACGTTCTCG 60.961 60.000 0.00 0.00 44.28 4.04
648 651 3.106672 GTCAACTACGAGACGCTTATGG 58.893 50.000 0.00 0.00 0.00 2.74
649 652 2.751259 TCAACTACGAGACGCTTATGGT 59.249 45.455 0.00 0.00 0.00 3.55
650 653 2.846039 ACTACGAGACGCTTATGGTG 57.154 50.000 0.00 0.00 0.00 4.17
651 654 2.362736 ACTACGAGACGCTTATGGTGA 58.637 47.619 0.00 0.00 0.00 4.02
652 655 2.097142 ACTACGAGACGCTTATGGTGAC 59.903 50.000 0.00 0.00 0.00 3.67
653 656 1.174783 ACGAGACGCTTATGGTGACT 58.825 50.000 0.00 0.00 33.61 3.41
654 657 1.544691 ACGAGACGCTTATGGTGACTT 59.455 47.619 0.00 0.00 31.36 3.01
658 661 2.029290 AGACGCTTATGGTGACTTCGTT 60.029 45.455 0.00 0.00 0.00 3.85
662 665 4.565564 ACGCTTATGGTGACTTCGTTAATC 59.434 41.667 0.00 0.00 0.00 1.75
664 667 5.276395 CGCTTATGGTGACTTCGTTAATCTG 60.276 44.000 0.00 0.00 0.00 2.90
667 670 7.148474 GCTTATGGTGACTTCGTTAATCTGAAA 60.148 37.037 0.00 0.00 0.00 2.69
685 688 7.921786 TCTGAAAATGATATTTCAACTCGGT 57.078 32.000 4.29 0.00 45.75 4.69
686 689 7.974675 TCTGAAAATGATATTTCAACTCGGTC 58.025 34.615 4.29 0.00 45.75 4.79
688 691 8.335532 TGAAAATGATATTTCAACTCGGTCTT 57.664 30.769 0.30 0.00 44.11 3.01
689 692 8.792633 TGAAAATGATATTTCAACTCGGTCTTT 58.207 29.630 0.30 0.00 44.11 2.52
690 693 9.278734 GAAAATGATATTTCAACTCGGTCTTTC 57.721 33.333 0.00 0.00 38.80 2.62
692 695 5.716094 TGATATTTCAACTCGGTCTTTCGA 58.284 37.500 0.00 0.00 37.60 3.71
694 697 6.647481 TGATATTTCAACTCGGTCTTTCGAAA 59.353 34.615 10.71 10.71 38.77 3.46
695 698 5.744666 ATTTCAACTCGGTCTTTCGAAAA 57.255 34.783 12.41 0.54 38.77 2.29
696 699 5.744666 TTTCAACTCGGTCTTTCGAAAAT 57.255 34.783 12.41 0.00 38.77 1.82
697 700 4.725556 TCAACTCGGTCTTTCGAAAATG 57.274 40.909 12.41 1.25 38.77 2.32
698 701 3.059188 TCAACTCGGTCTTTCGAAAATGC 60.059 43.478 12.41 4.92 38.77 3.56
699 702 2.767505 ACTCGGTCTTTCGAAAATGCT 58.232 42.857 12.41 0.00 38.77 3.79
700 703 2.737252 ACTCGGTCTTTCGAAAATGCTC 59.263 45.455 12.41 1.22 38.77 4.26
701 704 2.736721 CTCGGTCTTTCGAAAATGCTCA 59.263 45.455 12.41 0.00 38.77 4.26
702 705 3.334691 TCGGTCTTTCGAAAATGCTCAT 58.665 40.909 12.41 0.00 36.12 2.90
703 706 4.500127 TCGGTCTTTCGAAAATGCTCATA 58.500 39.130 12.41 0.00 36.12 2.15
704 707 4.566759 TCGGTCTTTCGAAAATGCTCATAG 59.433 41.667 12.41 0.00 36.12 2.23
705 708 4.260375 CGGTCTTTCGAAAATGCTCATAGG 60.260 45.833 12.41 0.00 0.00 2.57
706 709 4.035675 GGTCTTTCGAAAATGCTCATAGGG 59.964 45.833 12.41 0.00 0.00 3.53
707 710 4.876107 GTCTTTCGAAAATGCTCATAGGGA 59.124 41.667 12.41 0.00 0.00 4.20
708 711 5.529060 GTCTTTCGAAAATGCTCATAGGGAT 59.471 40.000 12.41 0.00 0.00 3.85
709 712 6.706270 GTCTTTCGAAAATGCTCATAGGGATA 59.294 38.462 12.41 0.00 0.00 2.59
710 713 6.931281 TCTTTCGAAAATGCTCATAGGGATAG 59.069 38.462 12.41 0.00 0.00 2.08
711 714 5.152623 TCGAAAATGCTCATAGGGATAGG 57.847 43.478 0.00 0.00 0.00 2.57
712 715 4.020218 TCGAAAATGCTCATAGGGATAGGG 60.020 45.833 0.00 0.00 0.00 3.53
713 716 4.263068 CGAAAATGCTCATAGGGATAGGGT 60.263 45.833 0.00 0.00 0.00 4.34
714 717 4.917906 AAATGCTCATAGGGATAGGGTC 57.082 45.455 0.00 0.00 0.00 4.46
715 718 3.862600 ATGCTCATAGGGATAGGGTCT 57.137 47.619 0.00 0.00 0.00 3.85
716 719 2.894731 TGCTCATAGGGATAGGGTCTG 58.105 52.381 0.00 0.00 0.00 3.51
717 720 1.552792 GCTCATAGGGATAGGGTCTGC 59.447 57.143 0.00 0.00 0.00 4.26
724 727 0.249398 GGATAGGGTCTGCGTGTGTT 59.751 55.000 0.00 0.00 0.00 3.32
743 746 6.199908 GTGTGTTCATAGAGATGAGTGTATGC 59.800 42.308 0.00 0.00 43.03 3.14
744 747 5.400782 GTGTTCATAGAGATGAGTGTATGCG 59.599 44.000 0.00 0.00 43.03 4.73
746 749 2.688364 TAGAGATGAGTGTATGCGCG 57.312 50.000 0.00 0.00 0.00 6.86
747 750 0.741326 AGAGATGAGTGTATGCGCGT 59.259 50.000 8.43 7.55 0.00 6.01
749 752 2.554462 AGAGATGAGTGTATGCGCGTAT 59.446 45.455 15.52 15.52 0.00 3.06
750 753 3.751698 AGAGATGAGTGTATGCGCGTATA 59.248 43.478 13.13 13.13 0.00 1.47
751 754 4.396478 AGAGATGAGTGTATGCGCGTATAT 59.604 41.667 19.79 4.31 0.00 0.86
752 755 5.585047 AGAGATGAGTGTATGCGCGTATATA 59.415 40.000 19.79 14.59 0.00 0.86
753 756 6.261158 AGAGATGAGTGTATGCGCGTATATAT 59.739 38.462 19.79 9.03 0.00 0.86
754 757 7.441458 AGAGATGAGTGTATGCGCGTATATATA 59.559 37.037 19.79 8.65 0.00 0.86
755 758 7.927048 AGATGAGTGTATGCGCGTATATATAA 58.073 34.615 19.79 7.70 0.00 0.98
756 759 8.070769 AGATGAGTGTATGCGCGTATATATAAG 58.929 37.037 19.79 1.67 0.00 1.73
757 760 5.969435 TGAGTGTATGCGCGTATATATAAGC 59.031 40.000 19.79 17.64 34.97 3.09
758 761 6.132791 AGTGTATGCGCGTATATATAAGCT 57.867 37.500 19.79 7.90 35.94 3.74
759 762 6.561614 AGTGTATGCGCGTATATATAAGCTT 58.438 36.000 19.79 3.48 35.94 3.74
760 763 7.700505 AGTGTATGCGCGTATATATAAGCTTA 58.299 34.615 19.79 8.99 35.94 3.09
761 764 8.350722 AGTGTATGCGCGTATATATAAGCTTAT 58.649 33.333 22.09 22.09 35.94 1.73
762 765 8.417928 GTGTATGCGCGTATATATAAGCTTATG 58.582 37.037 25.99 11.23 35.94 1.90
763 766 5.883328 TGCGCGTATATATAAGCTTATGC 57.117 39.130 25.99 18.44 35.94 3.14
765 768 4.440103 GCGCGTATATATAAGCTTATGCGT 59.560 41.667 30.58 19.64 46.42 5.24
766 769 5.386120 GCGCGTATATATAAGCTTATGCGTC 60.386 44.000 30.58 23.50 46.42 5.19
767 770 5.907945 CGCGTATATATAAGCTTATGCGTCT 59.092 40.000 26.17 12.92 42.25 4.18
768 771 6.129691 CGCGTATATATAAGCTTATGCGTCTG 60.130 42.308 26.17 15.82 42.25 3.51
769 772 6.691818 GCGTATATATAAGCTTATGCGTCTGT 59.308 38.462 25.99 9.47 45.42 3.41
770 773 7.220300 GCGTATATATAAGCTTATGCGTCTGTT 59.780 37.037 25.99 2.70 45.42 3.16
771 774 9.073368 CGTATATATAAGCTTATGCGTCTGTTT 57.927 33.333 25.99 1.98 45.42 2.83
774 777 5.880054 ATAAGCTTATGCGTCTGTTTTGT 57.120 34.783 18.20 0.00 45.42 2.83
775 778 3.542712 AGCTTATGCGTCTGTTTTGTG 57.457 42.857 0.00 0.00 45.42 3.33
776 779 2.878406 AGCTTATGCGTCTGTTTTGTGT 59.122 40.909 0.00 0.00 45.42 3.72
777 780 3.315191 AGCTTATGCGTCTGTTTTGTGTT 59.685 39.130 0.00 0.00 45.42 3.32
778 781 4.041723 GCTTATGCGTCTGTTTTGTGTTT 58.958 39.130 0.00 0.00 0.00 2.83
779 782 5.008217 AGCTTATGCGTCTGTTTTGTGTTTA 59.992 36.000 0.00 0.00 45.42 2.01
780 783 5.683743 GCTTATGCGTCTGTTTTGTGTTTAA 59.316 36.000 0.00 0.00 0.00 1.52
781 784 6.197468 GCTTATGCGTCTGTTTTGTGTTTAAA 59.803 34.615 0.00 0.00 0.00 1.52
782 785 7.253817 GCTTATGCGTCTGTTTTGTGTTTAAAA 60.254 33.333 0.00 0.00 0.00 1.52
783 786 6.952935 ATGCGTCTGTTTTGTGTTTAAAAA 57.047 29.167 0.00 0.00 31.92 1.94
806 809 2.846039 CTCGCCGTTGAGTACTGTAT 57.154 50.000 0.00 0.00 0.00 2.29
807 810 2.717530 CTCGCCGTTGAGTACTGTATC 58.282 52.381 0.00 0.00 0.00 2.24
808 811 2.355132 CTCGCCGTTGAGTACTGTATCT 59.645 50.000 0.00 0.00 0.00 1.98
809 812 2.353889 TCGCCGTTGAGTACTGTATCTC 59.646 50.000 0.00 9.19 0.00 2.75
810 813 2.096980 CGCCGTTGAGTACTGTATCTCA 59.903 50.000 0.00 12.81 38.66 3.27
811 814 3.427098 CGCCGTTGAGTACTGTATCTCAA 60.427 47.826 19.55 19.55 44.80 3.02
863 866 2.438795 CCGTTGGGTGGGACCATT 59.561 61.111 0.00 0.00 41.02 3.16
872 875 1.913419 GGTGGGACCATTAGTTCAGGA 59.087 52.381 0.00 0.00 38.42 3.86
1136 1174 0.250234 CTCCCAAATCCGCAGTCTCA 59.750 55.000 0.00 0.00 0.00 3.27
1178 1271 1.410004 TGGATTAGAGGGGCGTACTG 58.590 55.000 0.00 0.00 0.00 2.74
1220 1316 3.491447 CCCTTTTCAACAAGTGGAAGCAG 60.491 47.826 0.00 0.00 0.00 4.24
1235 1331 0.892814 AGCAGTCTTTGGAAGCTGGC 60.893 55.000 0.00 0.00 34.99 4.85
1251 1358 1.282157 CTGGCTGGTACCTTTAGGCTT 59.718 52.381 20.62 0.00 39.32 4.35
1254 1361 1.369625 CTGGTACCTTTAGGCTTGCG 58.630 55.000 14.36 0.00 39.32 4.85
1282 1389 3.545724 TGCTGTTGAGAGCATGGAG 57.454 52.632 0.00 0.00 44.16 3.86
1296 1403 2.292845 GCATGGAGCCAAGAATTCTAGC 59.707 50.000 18.31 18.31 37.23 3.42
1297 1404 2.315925 TGGAGCCAAGAATTCTAGCG 57.684 50.000 19.31 8.15 32.50 4.26
1298 1405 1.831106 TGGAGCCAAGAATTCTAGCGA 59.169 47.619 19.31 9.11 32.50 4.93
1299 1406 2.159043 TGGAGCCAAGAATTCTAGCGAG 60.159 50.000 19.31 5.58 32.50 5.03
1300 1407 2.159028 GGAGCCAAGAATTCTAGCGAGT 60.159 50.000 19.31 7.31 32.50 4.18
1301 1408 3.120041 GAGCCAAGAATTCTAGCGAGTC 58.880 50.000 19.31 11.39 32.50 3.36
1302 1409 2.497675 AGCCAAGAATTCTAGCGAGTCA 59.502 45.455 19.31 0.00 32.50 3.41
1303 1410 2.605366 GCCAAGAATTCTAGCGAGTCAC 59.395 50.000 8.75 0.00 0.00 3.67
1305 1412 4.499183 CCAAGAATTCTAGCGAGTCACTT 58.501 43.478 8.75 0.00 0.00 3.16
1306 1413 4.932200 CCAAGAATTCTAGCGAGTCACTTT 59.068 41.667 8.75 0.00 0.00 2.66
1307 1414 5.163913 CCAAGAATTCTAGCGAGTCACTTTG 60.164 44.000 8.75 0.00 0.00 2.77
1308 1415 4.499183 AGAATTCTAGCGAGTCACTTTGG 58.501 43.478 6.06 0.00 0.00 3.28
1309 1416 3.963428 ATTCTAGCGAGTCACTTTGGT 57.037 42.857 0.00 0.00 0.00 3.67
1310 1417 3.746045 TTCTAGCGAGTCACTTTGGTT 57.254 42.857 0.00 0.00 0.00 3.67
1311 1418 3.746045 TCTAGCGAGTCACTTTGGTTT 57.254 42.857 0.00 0.00 0.00 3.27
1312 1419 4.859304 TCTAGCGAGTCACTTTGGTTTA 57.141 40.909 0.00 0.00 0.00 2.01
1313 1420 5.401531 TCTAGCGAGTCACTTTGGTTTAT 57.598 39.130 0.00 0.00 0.00 1.40
1337 1444 7.884816 TTGTGTTCTAGTATCTTGCACTTAC 57.115 36.000 0.00 0.00 0.00 2.34
1339 1446 7.313646 TGTGTTCTAGTATCTTGCACTTACTC 58.686 38.462 5.84 0.00 0.00 2.59
1344 1451 5.386958 AGTATCTTGCACTTACTCGTTCA 57.613 39.130 0.00 0.00 0.00 3.18
1349 1456 6.887376 TCTTGCACTTACTCGTTCATTATC 57.113 37.500 0.00 0.00 0.00 1.75
1367 1477 3.515602 ATCTTTCTCAACAGGCTGGTT 57.484 42.857 20.34 7.93 0.00 3.67
1524 1663 6.127101 ACTTGCACCCTTAACTTCTAAAACT 58.873 36.000 0.00 0.00 0.00 2.66
2344 2814 8.484641 TTCTCAACTGAGTATGAAGCTATTTG 57.515 34.615 6.61 0.00 42.60 2.32
2361 2831 5.527582 GCTATTTGTACCCTGAATACCAGTG 59.472 44.000 0.00 0.00 41.33 3.66
2370 2840 3.430929 CCTGAATACCAGTGCTCCTACAC 60.431 52.174 0.00 0.00 41.33 2.90
2378 2848 2.093447 CAGTGCTCCTACACCTTAAGGG 60.093 54.545 25.31 15.99 41.67 3.95
2379 2849 2.185387 GTGCTCCTACACCTTAAGGGA 58.815 52.381 25.31 11.32 40.27 4.20
2380 2850 2.093606 GTGCTCCTACACCTTAAGGGAC 60.094 54.545 25.31 3.43 40.27 4.46
2381 2851 1.136500 GCTCCTACACCTTAAGGGACG 59.864 57.143 25.31 15.12 40.27 4.79
2382 2852 1.755380 CTCCTACACCTTAAGGGACGG 59.245 57.143 25.31 18.04 40.27 4.79
2383 2853 0.828677 CCTACACCTTAAGGGACGGG 59.171 60.000 25.31 16.69 40.27 5.28
2384 2854 0.177373 CTACACCTTAAGGGACGGGC 59.823 60.000 25.31 0.00 40.27 6.13
2385 2855 1.266867 TACACCTTAAGGGACGGGCC 61.267 60.000 25.31 0.00 40.27 5.80
2413 2883 4.154556 GCATACAAGCCAAAATTGCAACAT 59.845 37.500 0.00 0.00 0.00 2.71
2427 2897 8.532977 AAATTGCAACATATTTCAGTGTTACC 57.467 30.769 0.00 0.00 36.48 2.85
2503 2974 5.129485 TCCCCATTTATCACTGAGAGAGAAC 59.871 44.000 0.00 0.00 0.00 3.01
2604 3081 7.226720 TGACTTCAAGGTTGTATCTTCAGAAAC 59.773 37.037 0.00 0.00 0.00 2.78
2882 3364 3.643199 TGTCCACCATGCTAAGCAATA 57.357 42.857 0.00 0.00 43.62 1.90
2952 3434 2.754552 TGGCTTATTGTGCAGCTTAAGG 59.245 45.455 4.29 0.00 36.20 2.69
2953 3435 3.016736 GGCTTATTGTGCAGCTTAAGGA 58.983 45.455 4.29 0.00 36.20 3.36
2954 3436 3.443681 GGCTTATTGTGCAGCTTAAGGAA 59.556 43.478 4.29 0.00 36.20 3.36
2955 3437 4.098501 GGCTTATTGTGCAGCTTAAGGAAT 59.901 41.667 4.29 0.00 36.20 3.01
2956 3438 5.299279 GGCTTATTGTGCAGCTTAAGGAATA 59.701 40.000 4.29 0.00 36.20 1.75
2957 3439 6.183360 GGCTTATTGTGCAGCTTAAGGAATAA 60.183 38.462 4.29 0.00 36.20 1.40
2958 3440 7.257722 GCTTATTGTGCAGCTTAAGGAATAAA 58.742 34.615 4.29 0.00 32.87 1.40
3251 3884 6.679327 ACTTGGTCAGAGTTTGTAAAGTTC 57.321 37.500 0.00 0.00 0.00 3.01
3260 3893 9.661563 TCAGAGTTTGTAAAGTTCAACTCTTTA 57.338 29.630 10.08 1.04 36.65 1.85
3307 3943 4.140853 TGGGACGGAGGGAGTAGTATATTT 60.141 45.833 0.00 0.00 0.00 1.40
3631 4671 7.064728 GTCAAAATCTATTTCTGGTAACGCTCT 59.935 37.037 0.00 0.00 42.51 4.09
3644 4684 1.890876 ACGCTCTAACCATGTTTGCA 58.109 45.000 0.00 0.00 0.00 4.08
3854 5159 5.590530 TGTAAAAAGGCTGTTTCACATGT 57.409 34.783 5.80 0.00 0.00 3.21
3871 5176 5.586643 TCACATGTTGCAGTTTGTACTAACA 59.413 36.000 19.88 8.37 37.29 2.41
3872 5177 6.262049 TCACATGTTGCAGTTTGTACTAACAT 59.738 34.615 19.88 9.90 41.16 2.71
3873 5178 6.917477 CACATGTTGCAGTTTGTACTAACATT 59.083 34.615 19.88 0.20 39.68 2.71
3874 5179 8.073167 CACATGTTGCAGTTTGTACTAACATTA 58.927 33.333 19.88 4.97 39.68 1.90
3875 5180 8.289618 ACATGTTGCAGTTTGTACTAACATTAG 58.710 33.333 19.88 9.35 39.68 1.73
3945 5250 2.220653 TTTCCATCCTGCTTCCTTGG 57.779 50.000 0.00 0.00 0.00 3.61
3948 5253 2.439156 ATCCTGCTTCCTTGGCGC 60.439 61.111 0.00 0.00 0.00 6.53
3986 5291 3.743521 CATCTGTTGTCAGTTCTTCCCA 58.256 45.455 0.00 0.00 41.91 4.37
3988 5293 2.503765 TCTGTTGTCAGTTCTTCCCACA 59.496 45.455 0.00 0.00 41.91 4.17
4030 5335 9.129209 CATATCAGTATATGTGACCTTAACACG 57.871 37.037 0.00 0.00 40.03 4.49
4155 5469 9.745018 ATAGTTTGCATGGTATAAGCATATTCT 57.255 29.630 0.00 0.00 38.19 2.40
4277 5594 2.890808 TGAAGCCTAATAGACCTGCG 57.109 50.000 0.00 0.00 0.00 5.18
4375 5694 4.242475 TCACGTGATTATTGAGTGGACAC 58.758 43.478 15.76 0.00 33.98 3.67
4522 5842 2.713167 GAGGATTCAATGGATGAGGGGA 59.287 50.000 0.00 0.00 39.77 4.81
4578 5898 8.785946 CAATTTGATTACCCAAGATTGCTTTTT 58.214 29.630 0.00 0.00 30.14 1.94
4594 5914 6.671614 TGCTTTTTATTATCACAGGTACCG 57.328 37.500 6.18 4.16 0.00 4.02
4604 5924 1.736645 CAGGTACCGTGCGTTCTGG 60.737 63.158 6.18 0.00 0.00 3.86
4613 5933 2.223735 CCGTGCGTTCTGGTATATCTGT 60.224 50.000 0.00 0.00 0.00 3.41
4713 6033 9.875691 AGAAATATGAGGAACAAATAAAAAGGC 57.124 29.630 0.00 0.00 0.00 4.35
4791 6111 2.533266 ATTGCTAGGTATGCCAGTCG 57.467 50.000 1.54 0.00 37.19 4.18
4792 6112 1.191535 TTGCTAGGTATGCCAGTCGT 58.808 50.000 1.54 0.00 37.19 4.34
4807 6128 4.143137 GCCAGTCGTTTGCCAAAATAATTG 60.143 41.667 0.00 0.00 0.00 2.32
4811 6132 5.461737 AGTCGTTTGCCAAAATAATTGTGTG 59.538 36.000 0.00 0.00 0.00 3.82
4923 6245 5.614324 CCTATGAAGGTTACTCCACATCA 57.386 43.478 0.00 0.00 38.19 3.07
4924 6246 6.179906 CCTATGAAGGTTACTCCACATCAT 57.820 41.667 0.00 0.00 38.19 2.45
4925 6247 6.226787 CCTATGAAGGTTACTCCACATCATC 58.773 44.000 0.00 0.00 38.19 2.92
5117 6442 6.095720 GGTCGCTCTATATTATAAGCCTCTGT 59.904 42.308 0.00 0.00 0.00 3.41
5763 7132 8.962884 AACATGTGCATATATCAGTTTACTCA 57.037 30.769 0.00 0.00 0.00 3.41
5783 7152 1.301677 CTCGCCCCAGTTGCTTCTTC 61.302 60.000 0.00 0.00 0.00 2.87
5785 7154 1.600916 GCCCCAGTTGCTTCTTCGT 60.601 57.895 0.00 0.00 0.00 3.85
5879 7248 1.318576 CCCAACCAACTCCAACTGTC 58.681 55.000 0.00 0.00 0.00 3.51
5887 7256 5.308825 ACCAACTCCAACTGTCTAAATGAG 58.691 41.667 0.00 0.00 0.00 2.90
5962 7331 3.626028 AGAGTTTAGCGGCAGTTTTTG 57.374 42.857 1.45 0.00 0.00 2.44
5964 7333 3.380320 AGAGTTTAGCGGCAGTTTTTGTT 59.620 39.130 1.45 0.00 0.00 2.83
5965 7334 3.443976 AGTTTAGCGGCAGTTTTTGTTG 58.556 40.909 1.45 0.00 0.00 3.33
5966 7335 3.119280 AGTTTAGCGGCAGTTTTTGTTGT 60.119 39.130 1.45 0.00 0.00 3.32
5967 7336 3.512033 TTAGCGGCAGTTTTTGTTGTT 57.488 38.095 1.45 0.00 0.00 2.83
5968 7337 1.639280 AGCGGCAGTTTTTGTTGTTG 58.361 45.000 1.45 0.00 0.00 3.33
5969 7338 1.067213 AGCGGCAGTTTTTGTTGTTGT 60.067 42.857 1.45 0.00 0.00 3.32
5970 7339 1.729517 GCGGCAGTTTTTGTTGTTGTT 59.270 42.857 0.00 0.00 0.00 2.83
5971 7340 2.473704 GCGGCAGTTTTTGTTGTTGTTG 60.474 45.455 0.00 0.00 0.00 3.33
5972 7341 2.734079 CGGCAGTTTTTGTTGTTGTTGT 59.266 40.909 0.00 0.00 0.00 3.32
5973 7342 3.185391 CGGCAGTTTTTGTTGTTGTTGTT 59.815 39.130 0.00 0.00 0.00 2.83
6016 7385 3.126001 TCCTGAATTGTGTGTCCAGTC 57.874 47.619 0.00 0.00 0.00 3.51
6036 7405 5.984926 CAGTCACATAACAAAAACAAGGCAT 59.015 36.000 0.00 0.00 0.00 4.40
6042 7411 6.820656 ACATAACAAAAACAAGGCATTGACAA 59.179 30.769 19.41 0.00 38.83 3.18
6043 7412 5.799681 AACAAAAACAAGGCATTGACAAG 57.200 34.783 19.41 6.00 38.83 3.16
6134 7503 3.595190 ATAAATTGTACCAGGAGCCCC 57.405 47.619 0.00 0.00 0.00 5.80
6153 7522 4.931601 GCCCCATTTCTTTTTCATTGTCTC 59.068 41.667 0.00 0.00 0.00 3.36
6192 7561 5.661271 TCAGATCTCCAACAGACATCTGGG 61.661 50.000 13.33 5.93 44.14 4.45
6350 7739 2.681848 CCAGTTGATCATCAGCCAAGTC 59.318 50.000 6.55 0.00 0.00 3.01
6359 7748 2.437359 AGCCAAGTCATCGCTGGC 60.437 61.111 4.11 4.11 45.30 4.85
6384 7773 4.049186 TGTCGTTAGAGCAACTTCAAGAC 58.951 43.478 0.00 0.00 34.77 3.01
6389 7778 2.050144 AGAGCAACTTCAAGACCTCCA 58.950 47.619 0.00 0.00 0.00 3.86
6452 7841 8.570488 ACCGTAAAAATTAAGGGAAGTTAACTG 58.430 33.333 9.34 0.00 0.00 3.16
6453 7842 8.785946 CCGTAAAAATTAAGGGAAGTTAACTGA 58.214 33.333 9.34 0.00 0.00 3.41
6454 7843 9.603298 CGTAAAAATTAAGGGAAGTTAACTGAC 57.397 33.333 9.34 6.70 0.00 3.51
6457 7846 7.520451 AAATTAAGGGAAGTTAACTGACACC 57.480 36.000 9.34 9.17 0.00 4.16
6458 7847 5.899631 TTAAGGGAAGTTAACTGACACCT 57.100 39.130 9.34 11.25 0.00 4.00
6459 7848 6.999705 TTAAGGGAAGTTAACTGACACCTA 57.000 37.500 9.34 0.00 0.00 3.08
6460 7849 5.899631 AAGGGAAGTTAACTGACACCTAA 57.100 39.130 9.34 0.00 0.00 2.69
6461 7850 6.449830 AAGGGAAGTTAACTGACACCTAAT 57.550 37.500 9.34 0.00 0.00 1.73
6462 7851 6.051179 AGGGAAGTTAACTGACACCTAATC 57.949 41.667 9.34 0.00 0.00 1.75
6463 7852 5.045797 AGGGAAGTTAACTGACACCTAATCC 60.046 44.000 9.34 8.63 0.00 3.01
6464 7853 5.183969 GGAAGTTAACTGACACCTAATCCC 58.816 45.833 9.34 0.00 0.00 3.85
6465 7854 5.045797 GGAAGTTAACTGACACCTAATCCCT 60.046 44.000 9.34 0.00 0.00 4.20
6466 7855 6.449830 AAGTTAACTGACACCTAATCCCTT 57.550 37.500 9.34 0.00 0.00 3.95
6467 7856 6.051179 AGTTAACTGACACCTAATCCCTTC 57.949 41.667 7.48 0.00 0.00 3.46
6468 7857 3.611766 AACTGACACCTAATCCCTTCG 57.388 47.619 0.00 0.00 0.00 3.79
6469 7858 2.537143 ACTGACACCTAATCCCTTCGT 58.463 47.619 0.00 0.00 0.00 3.85
6470 7859 2.496470 ACTGACACCTAATCCCTTCGTC 59.504 50.000 0.00 0.00 0.00 4.20
6471 7860 1.829222 TGACACCTAATCCCTTCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
6472 7861 1.138464 GACACCTAATCCCTTCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
6473 7862 0.104304 CACCTAATCCCTTCGTCCCG 59.896 60.000 0.00 0.00 0.00 5.14
6474 7863 1.047034 ACCTAATCCCTTCGTCCCGG 61.047 60.000 0.00 0.00 0.00 5.73
6475 7864 0.757935 CCTAATCCCTTCGTCCCGGA 60.758 60.000 0.73 0.00 0.00 5.14
6476 7865 1.117150 CTAATCCCTTCGTCCCGGAA 58.883 55.000 0.73 0.00 0.00 4.30
6477 7866 1.692519 CTAATCCCTTCGTCCCGGAAT 59.307 52.381 0.73 0.00 0.00 3.01
6478 7867 1.797320 AATCCCTTCGTCCCGGAATA 58.203 50.000 0.73 0.00 0.00 1.75
6479 7868 1.797320 ATCCCTTCGTCCCGGAATAA 58.203 50.000 0.73 0.00 0.00 1.40
6480 7869 1.570803 TCCCTTCGTCCCGGAATAAA 58.429 50.000 0.73 0.00 0.00 1.40
6481 7870 2.121129 TCCCTTCGTCCCGGAATAAAT 58.879 47.619 0.73 0.00 0.00 1.40
6482 7871 2.158871 TCCCTTCGTCCCGGAATAAATG 60.159 50.000 0.73 0.00 0.00 2.32
6483 7872 2.420967 CCCTTCGTCCCGGAATAAATGT 60.421 50.000 0.73 0.00 0.00 2.71
6541 7930 6.498651 TCTCCTAAACTCTTCCTGTGAATTCT 59.501 38.462 7.05 0.00 0.00 2.40
6583 7972 7.099266 TCTCATAAACAAGCATACAAATGGG 57.901 36.000 0.00 0.00 33.38 4.00
6586 7975 8.354711 TCATAAACAAGCATACAAATGGGTAA 57.645 30.769 0.00 0.00 33.38 2.85
6598 7987 9.114952 CATACAAATGGGTAACACATGTATGTA 57.885 33.333 17.39 14.77 45.50 2.29
6599 7988 7.385778 ACAAATGGGTAACACATGTATGTAC 57.614 36.000 0.00 1.11 39.39 2.90
6600 7989 6.376018 ACAAATGGGTAACACATGTATGTACC 59.624 38.462 17.56 17.56 39.39 3.34
6601 7990 5.702065 ATGGGTAACACATGTATGTACCA 57.298 39.130 23.20 18.05 39.39 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.468220 CGCTAAAGAAACCCTTATTATGGTTCC 60.468 40.741 0.00 0.00 43.94 3.62
1 2 7.066645 ACGCTAAAGAAACCCTTATTATGGTTC 59.933 37.037 0.00 0.00 43.94 3.62
11 12 2.651382 ACCACGCTAAAGAAACCCTT 57.349 45.000 0.00 0.00 36.47 3.95
25 26 5.103000 CCTGAAAAGTCTCTACATACCACG 58.897 45.833 0.00 0.00 0.00 4.94
26 27 6.038997 ACCTGAAAAGTCTCTACATACCAC 57.961 41.667 0.00 0.00 0.00 4.16
31 32 8.602472 AGAATAGACCTGAAAAGTCTCTACAT 57.398 34.615 0.00 0.00 43.48 2.29
33 34 7.762159 CCAAGAATAGACCTGAAAAGTCTCTAC 59.238 40.741 0.00 0.00 43.48 2.59
34 35 7.093289 CCCAAGAATAGACCTGAAAAGTCTCTA 60.093 40.741 0.00 0.00 43.48 2.43
57 58 0.907486 CTTGATGACAGAGGAGCCCA 59.093 55.000 0.00 0.00 0.00 5.36
84 85 5.991861 TGTCGTGGGGTGTGTAATTAATAT 58.008 37.500 0.00 0.00 0.00 1.28
86 87 4.289238 TGTCGTGGGGTGTGTAATTAAT 57.711 40.909 0.00 0.00 0.00 1.40
87 88 3.766068 TGTCGTGGGGTGTGTAATTAA 57.234 42.857 0.00 0.00 0.00 1.40
88 89 3.985019 ATGTCGTGGGGTGTGTAATTA 57.015 42.857 0.00 0.00 0.00 1.40
89 90 2.871096 ATGTCGTGGGGTGTGTAATT 57.129 45.000 0.00 0.00 0.00 1.40
109 110 3.943381 CTCTCAGCATGCCAATGTCTTTA 59.057 43.478 15.66 0.00 36.08 1.85
114 115 1.035932 GCCTCTCAGCATGCCAATGT 61.036 55.000 15.66 0.00 36.08 2.71
147 148 6.716284 TCACATGTGGTAATGATAAGTCCAA 58.284 36.000 25.16 0.00 0.00 3.53
162 163 5.356190 AGTTAGAAGCAATGATCACATGTGG 59.644 40.000 25.16 9.41 36.79 4.17
164 165 5.942236 ACAGTTAGAAGCAATGATCACATGT 59.058 36.000 0.00 0.00 36.79 3.21
182 183 2.120312 TGGACCACACCTTGACAGTTA 58.880 47.619 0.00 0.00 0.00 2.24
223 224 1.586422 GATGCTCGCATACACACCAT 58.414 50.000 4.10 0.00 36.70 3.55
236 237 2.983136 CGTTATCTCCATGACGATGCTC 59.017 50.000 0.00 0.00 43.05 4.26
241 242 2.617308 GTCTCCGTTATCTCCATGACGA 59.383 50.000 4.13 0.00 43.05 4.20
278 279 5.824904 CCTTGAAGATGAAGGTACAATGG 57.175 43.478 0.00 0.00 36.05 3.16
296 297 5.344743 TGAGATTGGTAGCTCTAACCTTG 57.655 43.478 5.75 0.00 37.68 3.61
301 302 4.384208 GGGCTTTGAGATTGGTAGCTCTAA 60.384 45.833 0.00 0.00 37.68 2.10
310 311 0.462789 GCCATGGGCTTTGAGATTGG 59.537 55.000 15.13 0.00 46.69 3.16
325 326 2.645838 AACATGCTTATCGAGGCCAT 57.354 45.000 5.01 0.00 0.00 4.40
327 328 2.945668 AGAAAACATGCTTATCGAGGCC 59.054 45.455 0.00 0.00 0.00 5.19
338 339 7.587757 CGCCTATAATAAAGACAGAAAACATGC 59.412 37.037 0.00 0.00 0.00 4.06
339 340 8.612619 ACGCCTATAATAAAGACAGAAAACATG 58.387 33.333 0.00 0.00 0.00 3.21
343 344 8.826710 CATGACGCCTATAATAAAGACAGAAAA 58.173 33.333 0.00 0.00 0.00 2.29
348 349 6.478673 CACACATGACGCCTATAATAAAGACA 59.521 38.462 0.00 0.00 0.00 3.41
349 350 6.073765 CCACACATGACGCCTATAATAAAGAC 60.074 42.308 0.00 0.00 0.00 3.01
353 354 4.062293 GCCACACATGACGCCTATAATAA 58.938 43.478 0.00 0.00 0.00 1.40
354 355 3.323691 AGCCACACATGACGCCTATAATA 59.676 43.478 0.00 0.00 0.00 0.98
360 361 2.359107 CAGCCACACATGACGCCT 60.359 61.111 0.00 0.00 0.00 5.52
374 375 4.943705 TGAAGATCTGATGGGTTTAACAGC 59.056 41.667 0.00 0.00 0.00 4.40
375 376 7.121759 ACAATGAAGATCTGATGGGTTTAACAG 59.878 37.037 0.00 0.00 0.00 3.16
387 388 7.675161 TTACTGGGATACAATGAAGATCTGA 57.325 36.000 0.00 0.00 39.74 3.27
397 398 9.793259 ATTCAACGATATTTACTGGGATACAAT 57.207 29.630 0.00 0.00 39.74 2.71
413 414 8.407064 ACCAAACACACTTTTTATTCAACGATA 58.593 29.630 0.00 0.00 0.00 2.92
416 417 6.879188 ACCAAACACACTTTTTATTCAACG 57.121 33.333 0.00 0.00 0.00 4.10
437 438 6.129247 CGACGAGTCTTACTTTGTTTAGAACC 60.129 42.308 1.56 0.00 0.00 3.62
441 442 6.744550 AACGACGAGTCTTACTTTGTTTAG 57.255 37.500 0.00 0.00 0.00 1.85
446 447 3.916776 GGGTAACGACGAGTCTTACTTTG 59.083 47.826 0.00 0.56 37.60 2.77
458 460 2.743126 TGCATTTTTAGGGGTAACGACG 59.257 45.455 0.00 0.00 37.60 5.12
459 461 4.456566 TCTTGCATTTTTAGGGGTAACGAC 59.543 41.667 0.00 0.00 37.60 4.34
470 472 2.546368 ACGCACGAGTCTTGCATTTTTA 59.454 40.909 20.22 0.00 40.20 1.52
476 479 4.238385 GTACGCACGAGTCTTGCA 57.762 55.556 20.22 0.14 40.20 4.08
487 490 2.029200 TCCAATTACAGGTTCGTACGCA 60.029 45.455 11.24 0.00 0.00 5.24
491 494 4.829872 ACCATCCAATTACAGGTTCGTA 57.170 40.909 0.00 0.00 0.00 3.43
493 496 4.574828 CCTAACCATCCAATTACAGGTTCG 59.425 45.833 0.00 0.00 41.37 3.95
494 497 5.751586 TCCTAACCATCCAATTACAGGTTC 58.248 41.667 0.00 0.00 41.37 3.62
502 505 4.164988 CACTCTCCTCCTAACCATCCAATT 59.835 45.833 0.00 0.00 0.00 2.32
521 524 1.078143 GTGGGCTGGGACATCACTC 60.078 63.158 0.00 0.00 38.20 3.51
528 531 2.640581 AAACACAGGTGGGCTGGGAC 62.641 60.000 4.24 0.00 34.19 4.46
541 544 3.211045 GAGCACCAGGACTTAAAACACA 58.789 45.455 0.00 0.00 0.00 3.72
542 545 2.223377 CGAGCACCAGGACTTAAAACAC 59.777 50.000 0.00 0.00 0.00 3.32
543 546 2.489971 CGAGCACCAGGACTTAAAACA 58.510 47.619 0.00 0.00 0.00 2.83
545 548 1.202710 TGCGAGCACCAGGACTTAAAA 60.203 47.619 0.00 0.00 0.00 1.52
555 558 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
557 560 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
580 583 6.855763 ATCCATCACTGCAAATCCTAAAAA 57.144 33.333 0.00 0.00 0.00 1.94
592 595 4.973168 TCCCACTAAATATCCATCACTGC 58.027 43.478 0.00 0.00 0.00 4.40
596 599 5.544176 GTCTCCTCCCACTAAATATCCATCA 59.456 44.000 0.00 0.00 0.00 3.07
603 606 4.607239 AGAACGTCTCCTCCCACTAAATA 58.393 43.478 0.00 0.00 0.00 1.40
607 610 1.678123 CGAGAACGTCTCCTCCCACTA 60.678 57.143 8.73 0.00 40.34 2.74
627 630 3.106672 CCATAAGCGTCTCGTAGTTGAC 58.893 50.000 0.00 0.00 0.00 3.18
628 631 2.751259 ACCATAAGCGTCTCGTAGTTGA 59.249 45.455 0.00 0.00 0.00 3.18
629 632 2.852413 CACCATAAGCGTCTCGTAGTTG 59.148 50.000 0.00 0.00 0.00 3.16
630 633 2.751259 TCACCATAAGCGTCTCGTAGTT 59.249 45.455 0.00 0.00 0.00 2.24
631 634 2.097142 GTCACCATAAGCGTCTCGTAGT 59.903 50.000 0.00 0.00 0.00 2.73
632 635 2.355132 AGTCACCATAAGCGTCTCGTAG 59.645 50.000 0.00 0.00 0.00 3.51
633 636 2.362736 AGTCACCATAAGCGTCTCGTA 58.637 47.619 0.00 0.00 0.00 3.43
634 637 1.174783 AGTCACCATAAGCGTCTCGT 58.825 50.000 0.00 0.00 0.00 4.18
635 638 2.186076 GAAGTCACCATAAGCGTCTCG 58.814 52.381 0.00 0.00 0.00 4.04
636 639 2.186076 CGAAGTCACCATAAGCGTCTC 58.814 52.381 0.00 0.00 0.00 3.36
637 640 1.544691 ACGAAGTCACCATAAGCGTCT 59.455 47.619 0.00 0.00 29.74 4.18
638 641 1.992170 ACGAAGTCACCATAAGCGTC 58.008 50.000 0.00 0.00 29.74 5.19
639 642 2.450609 AACGAAGTCACCATAAGCGT 57.549 45.000 0.00 0.00 45.00 5.07
640 643 4.804139 AGATTAACGAAGTCACCATAAGCG 59.196 41.667 0.00 0.00 45.00 4.68
641 644 5.810587 TCAGATTAACGAAGTCACCATAAGC 59.189 40.000 0.00 0.00 45.00 3.09
642 645 7.827819 TTCAGATTAACGAAGTCACCATAAG 57.172 36.000 0.00 0.00 45.00 1.73
643 646 8.610248 TTTTCAGATTAACGAAGTCACCATAA 57.390 30.769 0.00 0.00 45.00 1.90
644 647 8.664798 CATTTTCAGATTAACGAAGTCACCATA 58.335 33.333 0.00 0.00 45.00 2.74
645 648 7.390440 TCATTTTCAGATTAACGAAGTCACCAT 59.610 33.333 0.00 0.00 45.00 3.55
646 649 6.708502 TCATTTTCAGATTAACGAAGTCACCA 59.291 34.615 0.00 0.00 45.00 4.17
647 650 7.129109 TCATTTTCAGATTAACGAAGTCACC 57.871 36.000 0.00 0.00 45.00 4.02
662 665 7.978982 AGACCGAGTTGAAATATCATTTTCAG 58.021 34.615 0.58 0.00 44.12 3.02
664 667 9.278734 GAAAGACCGAGTTGAAATATCATTTTC 57.721 33.333 0.00 0.00 34.96 2.29
667 670 6.816640 TCGAAAGACCGAGTTGAAATATCATT 59.183 34.615 0.00 0.00 33.15 2.57
675 678 4.553938 GCATTTTCGAAAGACCGAGTTGAA 60.554 41.667 10.98 0.00 41.84 2.69
676 679 3.059188 GCATTTTCGAAAGACCGAGTTGA 60.059 43.478 10.98 0.00 41.84 3.18
678 681 3.139077 AGCATTTTCGAAAGACCGAGTT 58.861 40.909 10.98 0.00 41.84 3.01
679 682 2.737252 GAGCATTTTCGAAAGACCGAGT 59.263 45.455 10.98 0.00 41.84 4.18
680 683 2.736721 TGAGCATTTTCGAAAGACCGAG 59.263 45.455 10.98 0.61 41.84 4.63
683 686 4.035675 CCCTATGAGCATTTTCGAAAGACC 59.964 45.833 10.98 3.46 41.84 3.85
685 688 5.097742 TCCCTATGAGCATTTTCGAAAGA 57.902 39.130 10.98 3.16 39.20 2.52
686 689 6.148480 CCTATCCCTATGAGCATTTTCGAAAG 59.852 42.308 10.98 1.62 0.00 2.62
688 691 5.513094 CCCTATCCCTATGAGCATTTTCGAA 60.513 44.000 0.00 0.00 0.00 3.71
689 692 4.020218 CCCTATCCCTATGAGCATTTTCGA 60.020 45.833 0.00 0.00 0.00 3.71
690 693 4.256920 CCCTATCCCTATGAGCATTTTCG 58.743 47.826 0.00 0.00 0.00 3.46
692 695 4.916424 AGACCCTATCCCTATGAGCATTTT 59.084 41.667 0.00 0.00 0.00 1.82
694 697 3.843027 CAGACCCTATCCCTATGAGCATT 59.157 47.826 0.00 0.00 0.00 3.56
695 698 3.448934 CAGACCCTATCCCTATGAGCAT 58.551 50.000 0.00 0.00 0.00 3.79
696 699 2.894731 CAGACCCTATCCCTATGAGCA 58.105 52.381 0.00 0.00 0.00 4.26
697 700 1.552792 GCAGACCCTATCCCTATGAGC 59.447 57.143 0.00 0.00 0.00 4.26
698 701 1.821753 CGCAGACCCTATCCCTATGAG 59.178 57.143 0.00 0.00 0.00 2.90
699 702 1.147191 ACGCAGACCCTATCCCTATGA 59.853 52.381 0.00 0.00 0.00 2.15
700 703 1.273606 CACGCAGACCCTATCCCTATG 59.726 57.143 0.00 0.00 0.00 2.23
701 704 1.133136 ACACGCAGACCCTATCCCTAT 60.133 52.381 0.00 0.00 0.00 2.57
702 705 0.260816 ACACGCAGACCCTATCCCTA 59.739 55.000 0.00 0.00 0.00 3.53
703 706 1.001760 ACACGCAGACCCTATCCCT 59.998 57.895 0.00 0.00 0.00 4.20
704 707 1.144057 CACACGCAGACCCTATCCC 59.856 63.158 0.00 0.00 0.00 3.85
705 708 0.249398 AACACACGCAGACCCTATCC 59.751 55.000 0.00 0.00 0.00 2.59
706 709 1.067142 TGAACACACGCAGACCCTATC 60.067 52.381 0.00 0.00 0.00 2.08
707 710 0.973632 TGAACACACGCAGACCCTAT 59.026 50.000 0.00 0.00 0.00 2.57
708 711 0.973632 ATGAACACACGCAGACCCTA 59.026 50.000 0.00 0.00 0.00 3.53
709 712 0.973632 TATGAACACACGCAGACCCT 59.026 50.000 0.00 0.00 0.00 4.34
710 713 1.067142 TCTATGAACACACGCAGACCC 60.067 52.381 0.00 0.00 0.00 4.46
711 714 2.094700 TCTCTATGAACACACGCAGACC 60.095 50.000 0.00 0.00 0.00 3.85
712 715 3.217599 TCTCTATGAACACACGCAGAC 57.782 47.619 0.00 0.00 0.00 3.51
713 716 3.443681 TCATCTCTATGAACACACGCAGA 59.556 43.478 0.00 0.00 39.20 4.26
714 717 3.774066 TCATCTCTATGAACACACGCAG 58.226 45.455 0.00 0.00 39.20 5.18
715 718 3.193479 ACTCATCTCTATGAACACACGCA 59.807 43.478 0.00 0.00 41.57 5.24
716 719 3.549471 CACTCATCTCTATGAACACACGC 59.451 47.826 0.00 0.00 41.57 5.34
717 720 4.738124 ACACTCATCTCTATGAACACACG 58.262 43.478 0.00 0.00 41.57 4.49
724 727 3.365364 CGCGCATACACTCATCTCTATGA 60.365 47.826 8.75 0.00 39.87 2.15
743 746 5.907945 AGACGCATAAGCTTATATATACGCG 59.092 40.000 29.75 29.75 44.14 6.01
744 747 6.691818 ACAGACGCATAAGCTTATATATACGC 59.308 38.462 18.45 14.77 39.10 4.42
749 752 8.547894 CACAAAACAGACGCATAAGCTTATATA 58.452 33.333 18.45 0.00 39.10 0.86
750 753 7.065803 ACACAAAACAGACGCATAAGCTTATAT 59.934 33.333 18.45 7.61 39.10 0.86
751 754 6.370442 ACACAAAACAGACGCATAAGCTTATA 59.630 34.615 18.45 0.00 39.10 0.98
752 755 5.181245 ACACAAAACAGACGCATAAGCTTAT 59.819 36.000 13.37 13.37 39.10 1.73
753 756 4.513692 ACACAAAACAGACGCATAAGCTTA 59.486 37.500 8.99 8.99 39.10 3.09
754 757 3.315191 ACACAAAACAGACGCATAAGCTT 59.685 39.130 3.48 3.48 39.10 3.74
755 758 2.878406 ACACAAAACAGACGCATAAGCT 59.122 40.909 0.00 0.00 39.10 3.74
756 759 3.268013 ACACAAAACAGACGCATAAGC 57.732 42.857 0.00 0.00 37.42 3.09
757 760 7.672351 TTTAAACACAAAACAGACGCATAAG 57.328 32.000 0.00 0.00 0.00 1.73
758 761 8.462143 TTTTTAAACACAAAACAGACGCATAA 57.538 26.923 0.00 0.00 0.00 1.90
760 763 6.952935 TTTTTAAACACAAAACAGACGCAT 57.047 29.167 0.00 0.00 0.00 4.73
782 785 2.542595 CAGTACTCAACGGCGAGTTTTT 59.457 45.455 16.62 0.00 43.84 1.94
783 786 2.132762 CAGTACTCAACGGCGAGTTTT 58.867 47.619 16.62 0.00 43.84 2.43
784 787 1.068127 ACAGTACTCAACGGCGAGTTT 59.932 47.619 16.62 0.00 43.84 2.66
785 788 0.672342 ACAGTACTCAACGGCGAGTT 59.328 50.000 16.62 0.00 43.84 3.01
787 790 2.355132 AGATACAGTACTCAACGGCGAG 59.645 50.000 16.62 2.47 39.05 5.03
788 791 2.353889 GAGATACAGTACTCAACGGCGA 59.646 50.000 16.62 0.00 33.86 5.54
789 792 2.096980 TGAGATACAGTACTCAACGGCG 59.903 50.000 4.80 4.80 39.68 6.46
790 793 3.777465 TGAGATACAGTACTCAACGGC 57.223 47.619 0.00 0.00 39.68 5.68
833 836 0.596082 CCAACGGCGAGTCCATTTTT 59.404 50.000 16.62 0.00 34.01 1.94
834 837 1.241315 CCCAACGGCGAGTCCATTTT 61.241 55.000 16.62 0.00 34.01 1.82
835 838 1.674322 CCCAACGGCGAGTCCATTT 60.674 57.895 16.62 0.00 34.01 2.32
836 839 2.046314 CCCAACGGCGAGTCCATT 60.046 61.111 16.62 0.00 34.01 3.16
837 840 3.319198 ACCCAACGGCGAGTCCAT 61.319 61.111 16.62 0.00 34.01 3.41
838 841 4.308458 CACCCAACGGCGAGTCCA 62.308 66.667 16.62 0.00 34.01 4.02
863 866 1.080093 CGGCGCAAGTCCTGAACTA 60.080 57.895 10.83 0.00 40.39 2.24
894 904 1.671054 GGCGCTGCTCTGTTAACCA 60.671 57.895 7.64 0.00 0.00 3.67
1136 1174 6.262720 CCAACCCAATCAATCAAAACAAACAT 59.737 34.615 0.00 0.00 0.00 2.71
1212 1308 1.143684 AGCTTCCAAAGACTGCTTCCA 59.856 47.619 0.00 0.00 31.82 3.53
1220 1316 0.538287 ACCAGCCAGCTTCCAAAGAC 60.538 55.000 0.00 0.00 0.00 3.01
1235 1331 1.369625 CGCAAGCCTAAAGGTACCAG 58.630 55.000 15.94 2.35 37.57 4.00
1279 1386 2.159028 ACTCGCTAGAATTCTTGGCTCC 60.159 50.000 14.36 0.00 0.00 4.70
1281 1388 2.497675 TGACTCGCTAGAATTCTTGGCT 59.502 45.455 14.36 3.53 0.00 4.75
1282 1389 2.605366 GTGACTCGCTAGAATTCTTGGC 59.395 50.000 14.36 16.45 0.00 4.52
1286 1393 4.021016 ACCAAAGTGACTCGCTAGAATTCT 60.021 41.667 13.56 13.56 0.00 2.40
1287 1394 4.246458 ACCAAAGTGACTCGCTAGAATTC 58.754 43.478 0.00 0.00 0.00 2.17
1289 1396 3.963428 ACCAAAGTGACTCGCTAGAAT 57.037 42.857 0.00 0.00 0.00 2.40
1290 1397 3.746045 AACCAAAGTGACTCGCTAGAA 57.254 42.857 0.00 0.00 0.00 2.10
1291 1398 3.746045 AAACCAAAGTGACTCGCTAGA 57.254 42.857 0.00 0.00 0.00 2.43
1292 1399 5.408604 ACAATAAACCAAAGTGACTCGCTAG 59.591 40.000 0.00 0.00 0.00 3.42
1294 1401 4.024048 CACAATAAACCAAAGTGACTCGCT 60.024 41.667 0.00 0.00 32.14 4.93
1295 1402 4.219033 CACAATAAACCAAAGTGACTCGC 58.781 43.478 0.00 0.00 32.14 5.03
1296 1403 5.418310 ACACAATAAACCAAAGTGACTCG 57.582 39.130 0.00 0.00 34.47 4.18
1297 1404 7.027778 AGAACACAATAAACCAAAGTGACTC 57.972 36.000 0.00 0.00 34.47 3.36
1298 1405 7.773690 ACTAGAACACAATAAACCAAAGTGACT 59.226 33.333 0.00 0.00 34.47 3.41
1299 1406 7.927048 ACTAGAACACAATAAACCAAAGTGAC 58.073 34.615 0.00 0.00 34.47 3.67
1300 1407 9.787435 ATACTAGAACACAATAAACCAAAGTGA 57.213 29.630 0.00 0.00 34.47 3.41
1305 1412 8.726988 GCAAGATACTAGAACACAATAAACCAA 58.273 33.333 0.00 0.00 0.00 3.67
1306 1413 7.880713 TGCAAGATACTAGAACACAATAAACCA 59.119 33.333 0.00 0.00 0.00 3.67
1307 1414 8.175716 GTGCAAGATACTAGAACACAATAAACC 58.824 37.037 0.00 0.00 0.00 3.27
1308 1415 8.936864 AGTGCAAGATACTAGAACACAATAAAC 58.063 33.333 0.00 0.00 0.00 2.01
1309 1416 9.502091 AAGTGCAAGATACTAGAACACAATAAA 57.498 29.630 0.00 0.00 0.00 1.40
1311 1418 9.582431 GTAAGTGCAAGATACTAGAACACAATA 57.418 33.333 0.00 0.00 0.00 1.90
1312 1419 8.314751 AGTAAGTGCAAGATACTAGAACACAAT 58.685 33.333 0.00 0.00 0.00 2.71
1313 1420 7.667557 AGTAAGTGCAAGATACTAGAACACAA 58.332 34.615 0.00 0.00 0.00 3.33
1337 1444 6.456181 GCCTGTTGAGAAAGATAATGAACGAG 60.456 42.308 0.00 0.00 0.00 4.18
1339 1446 5.352569 AGCCTGTTGAGAAAGATAATGAACG 59.647 40.000 0.00 0.00 0.00 3.95
1344 1451 5.184892 ACCAGCCTGTTGAGAAAGATAAT 57.815 39.130 0.00 0.00 0.00 1.28
1349 1456 2.035066 CCAAACCAGCCTGTTGAGAAAG 59.965 50.000 0.00 0.00 0.00 2.62
1367 1477 2.382882 TGCAACAATGTCCACTTCCAA 58.617 42.857 0.00 0.00 0.00 3.53
1394 1504 7.558444 AGTTTGGGAGTAAAATTCAACAGTACA 59.442 33.333 0.00 0.00 0.00 2.90
1397 1535 6.379988 ACAGTTTGGGAGTAAAATTCAACAGT 59.620 34.615 0.00 0.00 0.00 3.55
1524 1663 2.239654 GACCAGGGATGAATCTTGTCCA 59.760 50.000 0.00 0.00 33.62 4.02
2326 2796 6.703607 CAGGGTACAAATAGCTTCATACTCAG 59.296 42.308 0.00 0.00 0.00 3.35
2327 2797 6.382859 TCAGGGTACAAATAGCTTCATACTCA 59.617 38.462 0.00 0.00 0.00 3.41
2328 2798 6.817184 TCAGGGTACAAATAGCTTCATACTC 58.183 40.000 0.00 0.00 0.00 2.59
2329 2799 6.808321 TCAGGGTACAAATAGCTTCATACT 57.192 37.500 0.00 0.00 0.00 2.12
2330 2800 8.989980 GTATTCAGGGTACAAATAGCTTCATAC 58.010 37.037 0.00 0.00 0.00 2.39
2331 2801 8.154856 GGTATTCAGGGTACAAATAGCTTCATA 58.845 37.037 0.00 0.00 33.01 2.15
2332 2802 6.998673 GGTATTCAGGGTACAAATAGCTTCAT 59.001 38.462 0.00 0.00 33.01 2.57
2361 2831 1.136500 CGTCCCTTAAGGTGTAGGAGC 59.864 57.143 20.22 4.56 36.75 4.70
2370 2840 3.078836 TCGGCCCGTCCCTTAAGG 61.079 66.667 15.14 15.14 0.00 2.69
2410 2880 9.349713 TCTCAAAAAGGTAACACTGAAATATGT 57.650 29.630 0.00 0.00 41.41 2.29
2413 2883 9.793259 AGATCTCAAAAAGGTAACACTGAAATA 57.207 29.630 0.00 0.00 41.41 1.40
2427 2897 5.995055 GACACAAGGTCAGATCTCAAAAAG 58.005 41.667 0.00 0.00 46.19 2.27
2503 2974 2.615447 CTCATGGATGTGAATTGACGGG 59.385 50.000 0.00 0.00 0.00 5.28
2604 3081 3.340814 AACTCCTGATAACTGCACTGG 57.659 47.619 0.00 0.00 0.00 4.00
2751 3229 8.121305 TGAACCACATATGCAAATAAGAAAGT 57.879 30.769 1.58 0.00 0.00 2.66
3289 3925 7.949434 ACTTTGTAAATATACTACTCCCTCCG 58.051 38.462 0.00 0.00 32.98 4.63
3307 3943 6.243216 AGGGTCAGAGTAAACAACTTTGTA 57.757 37.500 0.00 0.00 41.31 2.41
3411 4090 7.602644 GGTCTCTCATTGTTACTGTGAAATACA 59.397 37.037 0.00 0.00 37.78 2.29
3627 4666 5.335127 CAGTTATGCAAACATGGTTAGAGC 58.665 41.667 0.00 0.00 37.04 4.09
3873 5178 9.679661 TGTTGCTCTGAAAATTATGGTTATCTA 57.320 29.630 0.00 0.00 0.00 1.98
3874 5179 8.579850 TGTTGCTCTGAAAATTATGGTTATCT 57.420 30.769 0.00 0.00 0.00 1.98
3875 5180 8.462016 ACTGTTGCTCTGAAAATTATGGTTATC 58.538 33.333 0.00 0.00 0.00 1.75
3883 5188 9.897744 CATAAAGAACTGTTGCTCTGAAAATTA 57.102 29.630 0.00 0.00 0.00 1.40
3945 5250 0.445436 CTCACCTCATGTTTCTGCGC 59.555 55.000 0.00 0.00 0.00 6.09
3948 5253 3.374367 CAGATGCTCACCTCATGTTTCTG 59.626 47.826 0.00 0.00 0.00 3.02
4030 5335 3.467803 ACCTGCAGAACAACTACTTCAC 58.532 45.455 17.39 0.00 0.00 3.18
4136 5442 9.219603 TCAAACTAGAATATGCTTATACCATGC 57.780 33.333 0.00 0.00 0.00 4.06
4277 5594 4.622364 GTGCTGCTCACAACAAGC 57.378 55.556 0.00 0.00 44.98 4.01
4335 5652 6.929049 TCACGTGAGATGAACATAAAGAGTTT 59.071 34.615 15.76 0.00 0.00 2.66
4522 5842 6.183360 CCGTTCTTGATATCAATCCAAAGCTT 60.183 38.462 18.26 0.00 35.02 3.74
4578 5898 2.689471 ACGCACGGTACCTGTGATAATA 59.311 45.455 29.12 0.00 39.73 0.98
4592 5912 2.223735 ACAGATATACCAGAACGCACGG 60.224 50.000 0.00 0.00 0.00 4.94
4594 5914 4.868171 TCAAACAGATATACCAGAACGCAC 59.132 41.667 0.00 0.00 0.00 5.34
4656 5976 3.421844 GCCCTTTACCTTCAGTGTCAAT 58.578 45.455 0.00 0.00 0.00 2.57
4713 6033 3.131396 AGGCAACACGTCTCAGTTTTAG 58.869 45.455 0.00 0.00 41.41 1.85
4791 6111 5.007528 ACAGCACACAATTATTTTGGCAAAC 59.992 36.000 13.10 0.00 0.00 2.93
4792 6112 5.121811 ACAGCACACAATTATTTTGGCAAA 58.878 33.333 8.93 8.93 0.00 3.68
4811 6132 3.119316 ACACTCAGTGTCTATGCTACAGC 60.119 47.826 3.98 0.00 43.92 4.40
4824 6145 5.422666 TGTATTTGCTCAAACACTCAGTG 57.577 39.130 2.22 2.22 39.75 3.66
4825 6146 4.516698 CCTGTATTTGCTCAAACACTCAGT 59.483 41.667 5.52 0.00 29.67 3.41
4917 6239 3.945921 ACATCCTTGAAGCAGATGATGTG 59.054 43.478 15.31 0.00 40.75 3.21
4918 6240 4.232188 ACATCCTTGAAGCAGATGATGT 57.768 40.909 15.31 11.60 39.84 3.06
4919 6241 4.755629 CCTACATCCTTGAAGCAGATGATG 59.244 45.833 15.31 11.08 39.84 3.07
4921 6243 4.033009 TCCTACATCCTTGAAGCAGATGA 58.967 43.478 15.31 0.00 39.84 2.92
4922 6244 4.412796 TCCTACATCCTTGAAGCAGATG 57.587 45.455 9.08 9.08 42.49 2.90
4923 6245 5.441718 TTTCCTACATCCTTGAAGCAGAT 57.558 39.130 0.00 0.00 0.00 2.90
4924 6246 4.908601 TTTCCTACATCCTTGAAGCAGA 57.091 40.909 0.00 0.00 0.00 4.26
4925 6247 6.521151 AAATTTCCTACATCCTTGAAGCAG 57.479 37.500 0.00 0.00 0.00 4.24
4976 6301 9.757227 CAAACATATCAACCACCTAAAAAGAAA 57.243 29.630 0.00 0.00 0.00 2.52
4979 6304 7.891561 TCCAAACATATCAACCACCTAAAAAG 58.108 34.615 0.00 0.00 0.00 2.27
5095 6420 7.328277 AGACAGAGGCTTATAATATAGAGCG 57.672 40.000 0.00 0.00 36.02 5.03
5117 6442 5.070770 TGCTGCACAAAGAAAAAGAAAGA 57.929 34.783 0.00 0.00 0.00 2.52
5763 7132 2.032681 GAAGCAACTGGGGCGAGT 59.967 61.111 0.00 0.00 36.08 4.18
5783 7152 1.654220 CTTGGGTGGCAACTGAACG 59.346 57.895 0.97 0.00 37.61 3.95
5785 7154 1.152567 CCCTTGGGTGGCAACTGAA 60.153 57.895 0.97 0.00 37.61 3.02
5811 7180 0.956633 TTCTGCTACGACGAACACCT 59.043 50.000 0.00 0.00 0.00 4.00
5879 7248 7.281774 ACATATGCTCAACACCTTCTCATTTAG 59.718 37.037 1.58 0.00 0.00 1.85
5887 7256 3.609853 TGGACATATGCTCAACACCTTC 58.390 45.455 1.58 0.00 0.00 3.46
5962 7331 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5964 7333 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5965 7334 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5966 7335 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5967 7336 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5968 7337 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5969 7338 6.201044 CCTTACAACAACAACAACAACAACAA 59.799 34.615 0.00 0.00 0.00 2.83
5970 7339 5.692204 CCTTACAACAACAACAACAACAACA 59.308 36.000 0.00 0.00 0.00 3.33
5971 7340 5.921408 TCCTTACAACAACAACAACAACAAC 59.079 36.000 0.00 0.00 0.00 3.32
5972 7341 6.085555 TCCTTACAACAACAACAACAACAA 57.914 33.333 0.00 0.00 0.00 2.83
5973 7342 5.707242 TCCTTACAACAACAACAACAACA 57.293 34.783 0.00 0.00 0.00 3.33
6016 7385 6.257411 TGTCAATGCCTTGTTTTTGTTATGTG 59.743 34.615 1.49 0.00 33.87 3.21
6036 7405 3.809279 CAGTGTCACAGTATGCTTGTCAA 59.191 43.478 5.62 0.00 42.53 3.18
6042 7411 0.686789 TGCCAGTGTCACAGTATGCT 59.313 50.000 5.62 0.00 42.53 3.79
6043 7412 1.742761 ATGCCAGTGTCACAGTATGC 58.257 50.000 5.62 0.31 42.53 3.14
6134 7503 6.218019 TGGCAGAGACAATGAAAAAGAAATG 58.782 36.000 0.00 0.00 0.00 2.32
6153 7522 1.066358 TCTGAGCTCACAAGATGGCAG 60.066 52.381 13.74 0.00 0.00 4.85
6350 7739 2.054363 CTAACGACATAGCCAGCGATG 58.946 52.381 10.68 10.68 35.61 3.84
6359 7748 6.034044 GTCTTGAAGTTGCTCTAACGACATAG 59.966 42.308 0.00 0.00 44.15 2.23
6435 7824 6.449830 AGGTGTCAGTTAACTTCCCTTAAT 57.550 37.500 5.07 0.00 0.00 1.40
6437 7826 6.999705 TTAGGTGTCAGTTAACTTCCCTTA 57.000 37.500 5.07 0.39 0.00 2.69
6452 7841 1.138464 GGGACGAAGGGATTAGGTGTC 59.862 57.143 0.00 0.00 0.00 3.67
6453 7842 1.201424 GGGACGAAGGGATTAGGTGT 58.799 55.000 0.00 0.00 0.00 4.16
6467 7856 5.646606 ATGAAAAACATTTATTCCGGGACG 58.353 37.500 0.00 0.00 44.66 4.79
6480 7869 9.816354 AGTAAAGTTGCACTAAATGAAAAACAT 57.184 25.926 0.00 0.00 41.45 2.71
6481 7870 9.646427 AAGTAAAGTTGCACTAAATGAAAAACA 57.354 25.926 0.00 0.00 0.00 2.83
6496 7885 6.261158 AGGAGAACTGAGAAAAGTAAAGTTGC 59.739 38.462 0.00 0.00 31.45 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.