Multiple sequence alignment - TraesCS5A01G330600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G330600 chr5A 100.000 2441 0 0 1 2441 540056537 540058977 0.000000e+00 4508.0
1 TraesCS5A01G330600 chr5D 87.758 1454 83 42 358 1765 425845731 425847135 0.000000e+00 1611.0
2 TraesCS5A01G330600 chr5D 86.538 312 14 9 1882 2190 425847255 425847541 3.920000e-83 318.0
3 TraesCS5A01G330600 chr5D 87.121 264 12 7 2198 2441 371273751 371274012 1.850000e-71 279.0
4 TraesCS5A01G330600 chr5D 87.121 264 12 7 2198 2441 507877139 507876878 1.850000e-71 279.0
5 TraesCS5A01G330600 chr5D 92.517 147 0 5 101 245 425845598 425845735 1.480000e-47 200.0
6 TraesCS5A01G330600 chr5D 91.489 141 7 1 1271 1411 3968028 3967893 3.200000e-44 189.0
7 TraesCS5A01G330600 chr5D 93.913 115 7 0 1754 1868 425847162 425847276 8.970000e-40 174.0
8 TraesCS5A01G330600 chr5D 93.939 99 6 0 249 347 434567638 434567540 1.510000e-32 150.0
9 TraesCS5A01G330600 chr5D 93.939 66 2 2 1 65 425845464 425845528 5.550000e-17 99.0
10 TraesCS5A01G330600 chr5B 86.708 1467 104 43 437 1868 515191708 515193118 0.000000e+00 1544.0
11 TraesCS5A01G330600 chr5B 87.702 309 24 5 1882 2190 515193097 515193391 5.000000e-92 348.0
12 TraesCS5A01G330600 chr5B 83.588 262 20 13 1 245 515189320 515189575 8.780000e-55 224.0
13 TraesCS5A01G330600 chr5B 92.708 96 4 3 358 450 515189571 515189666 4.230000e-28 135.0
14 TraesCS5A01G330600 chr5B 89.189 74 2 6 175 245 515112176 515112246 1.200000e-13 87.9
15 TraesCS5A01G330600 chr3A 96.748 246 6 1 2196 2441 747185671 747185428 2.260000e-110 409.0
16 TraesCS5A01G330600 chr2A 96.341 246 7 1 2196 2441 679001081 679000838 1.050000e-108 403.0
17 TraesCS5A01G330600 chr2A 96.341 246 7 1 2196 2441 773233211 773233454 1.050000e-108 403.0
18 TraesCS5A01G330600 chr2A 95.935 246 8 1 2196 2441 342645329 342645086 4.890000e-107 398.0
19 TraesCS5A01G330600 chr2A 95.960 99 4 0 249 347 259169146 259169048 6.980000e-36 161.0
20 TraesCS5A01G330600 chr2A 95.960 99 4 0 249 347 300542049 300541951 6.980000e-36 161.0
21 TraesCS5A01G330600 chr2A 93.939 99 6 0 249 347 348622693 348622595 1.510000e-32 150.0
22 TraesCS5A01G330600 chr2A 92.857 98 7 0 249 346 550186305 550186208 2.530000e-30 143.0
23 TraesCS5A01G330600 chr2A 90.654 107 9 1 242 347 486032042 486031936 9.100000e-30 141.0
24 TraesCS5A01G330600 chr7D 86.364 264 14 12 2198 2441 171753609 171753348 4.000000e-68 268.0
25 TraesCS5A01G330600 chr6D 92.308 104 8 0 242 345 125190716 125190613 5.440000e-32 148.0
26 TraesCS5A01G330600 chr7A 92.929 99 7 0 249 347 13930785 13930883 7.030000e-31 145.0
27 TraesCS5A01G330600 chr3D 90.566 106 10 0 242 347 540336985 540337090 9.100000e-30 141.0
28 TraesCS5A01G330600 chr3D 94.000 50 2 1 2201 2249 144759785 144759834 9.360000e-10 75.0
29 TraesCS5A01G330600 chr1B 92.000 50 3 1 2201 2249 435188456 435188407 4.360000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G330600 chr5A 540056537 540058977 2440 False 4508.00 4508 100.0000 1 2441 1 chr5A.!!$F1 2440
1 TraesCS5A01G330600 chr5D 425845464 425847541 2077 False 480.40 1611 90.9330 1 2190 5 chr5D.!!$F2 2189
2 TraesCS5A01G330600 chr5B 515189320 515193391 4071 False 562.75 1544 87.6765 1 2190 4 chr5B.!!$F2 2189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 2949 0.179171 CATCCGAGCAAGCAAGCAAG 60.179 55.0 3.19 0.0 36.85 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 4139 0.027194 CAGCGCCATTGTTCGATCTG 59.973 55.0 2.29 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.824806 CGCGCACGGTATAGTAGC 58.175 61.111 8.75 0.00 34.97 3.58
73 74 1.009335 CGCGCACGGTATAGTAGCA 60.009 57.895 8.75 0.00 34.97 3.49
74 75 0.997226 CGCGCACGGTATAGTAGCAG 60.997 60.000 8.75 0.00 34.97 4.24
75 76 0.309922 GCGCACGGTATAGTAGCAGA 59.690 55.000 0.30 0.00 0.00 4.26
96 97 1.532316 AGGGGACGACTTTCCACGA 60.532 57.895 0.00 0.00 44.78 4.35
97 98 0.903454 AGGGGACGACTTTCCACGAT 60.903 55.000 0.00 0.00 44.78 3.73
173 217 2.459710 CCCCCAGTAGTCCCCCTT 59.540 66.667 0.00 0.00 0.00 3.95
245 289 2.368655 AAACAAATCATTCTGCCCGC 57.631 45.000 0.00 0.00 0.00 6.13
246 290 0.532115 AACAAATCATTCTGCCCGCC 59.468 50.000 0.00 0.00 0.00 6.13
247 291 1.322538 ACAAATCATTCTGCCCGCCC 61.323 55.000 0.00 0.00 0.00 6.13
248 292 2.120909 AAATCATTCTGCCCGCCCG 61.121 57.895 0.00 0.00 0.00 6.13
249 293 4.569180 ATCATTCTGCCCGCCCGG 62.569 66.667 0.00 0.00 0.00 5.73
260 304 3.864686 CGCCCGGACGATGCTTTG 61.865 66.667 3.12 0.00 34.06 2.77
261 305 3.508840 GCCCGGACGATGCTTTGG 61.509 66.667 0.73 0.00 0.00 3.28
262 306 2.046314 CCCGGACGATGCTTTGGT 60.046 61.111 0.73 0.00 0.00 3.67
263 307 2.398554 CCCGGACGATGCTTTGGTG 61.399 63.158 0.73 0.00 0.00 4.17
264 308 2.480555 CGGACGATGCTTTGGTGC 59.519 61.111 0.00 0.00 0.00 5.01
265 309 2.877691 GGACGATGCTTTGGTGCC 59.122 61.111 0.00 0.00 0.00 5.01
266 310 1.675641 GGACGATGCTTTGGTGCCT 60.676 57.895 0.00 0.00 0.00 4.75
267 311 1.244019 GGACGATGCTTTGGTGCCTT 61.244 55.000 0.00 0.00 0.00 4.35
268 312 1.448985 GACGATGCTTTGGTGCCTTA 58.551 50.000 0.00 0.00 0.00 2.69
269 313 1.810151 GACGATGCTTTGGTGCCTTAA 59.190 47.619 0.00 0.00 0.00 1.85
270 314 1.812571 ACGATGCTTTGGTGCCTTAAG 59.187 47.619 0.00 0.00 0.00 1.85
271 315 1.133025 CGATGCTTTGGTGCCTTAAGG 59.867 52.381 17.81 17.81 38.53 2.69
291 335 5.552870 AGGCACCTACCTTTATGTCTATG 57.447 43.478 0.00 0.00 36.28 2.23
292 336 5.216622 AGGCACCTACCTTTATGTCTATGA 58.783 41.667 0.00 0.00 36.28 2.15
293 337 5.070580 AGGCACCTACCTTTATGTCTATGAC 59.929 44.000 0.00 0.00 36.28 3.06
294 338 5.163343 GGCACCTACCTTTATGTCTATGACA 60.163 44.000 2.77 2.77 46.90 3.58
295 339 8.573566 AGGCACCTACCTTTATGTCTATGACAT 61.574 40.741 15.99 15.99 45.64 3.06
303 347 0.546122 TGTCTATGACATGTGGGCCC 59.454 55.000 17.59 17.59 37.67 5.80
304 348 0.546122 GTCTATGACATGTGGGCCCA 59.454 55.000 24.45 24.45 32.09 5.36
305 349 1.064758 GTCTATGACATGTGGGCCCAA 60.065 52.381 30.64 17.87 32.09 4.12
306 350 1.064758 TCTATGACATGTGGGCCCAAC 60.065 52.381 30.64 21.29 0.00 3.77
307 351 0.701147 TATGACATGTGGGCCCAACA 59.299 50.000 30.64 26.33 0.00 3.33
308 352 0.612732 ATGACATGTGGGCCCAACAG 60.613 55.000 30.64 21.28 0.00 3.16
309 353 1.074775 GACATGTGGGCCCAACAGA 59.925 57.895 30.64 11.67 0.00 3.41
310 354 0.323725 GACATGTGGGCCCAACAGAT 60.324 55.000 30.64 17.86 0.00 2.90
311 355 0.612732 ACATGTGGGCCCAACAGATG 60.613 55.000 30.64 25.94 43.08 2.90
312 356 0.323633 CATGTGGGCCCAACAGATGA 60.324 55.000 30.64 4.68 40.80 2.92
313 357 0.323725 ATGTGGGCCCAACAGATGAC 60.324 55.000 30.64 12.49 0.00 3.06
314 358 1.380302 GTGGGCCCAACAGATGACT 59.620 57.895 30.64 0.00 0.00 3.41
317 361 1.380302 GGCCCAACAGATGACTGGT 59.620 57.895 0.00 0.00 45.85 4.00
318 362 0.678048 GGCCCAACAGATGACTGGTC 60.678 60.000 0.00 0.00 42.75 4.02
319 363 0.678048 GCCCAACAGATGACTGGTCC 60.678 60.000 0.00 0.00 42.75 4.46
320 364 0.692476 CCCAACAGATGACTGGTCCA 59.308 55.000 0.00 0.00 42.75 4.02
321 365 1.611673 CCCAACAGATGACTGGTCCAC 60.612 57.143 0.00 0.00 42.75 4.02
322 366 1.432514 CAACAGATGACTGGTCCACG 58.567 55.000 0.00 0.00 42.75 4.94
323 367 1.270305 CAACAGATGACTGGTCCACGT 60.270 52.381 0.00 0.00 42.75 4.49
324 368 3.128259 CAGATGACTGGTCCACGTG 57.872 57.895 9.08 9.08 40.14 4.49
325 369 0.318441 CAGATGACTGGTCCACGTGT 59.682 55.000 15.65 0.00 40.14 4.49
326 370 0.603569 AGATGACTGGTCCACGTGTC 59.396 55.000 15.65 7.11 0.00 3.67
327 371 0.317160 GATGACTGGTCCACGTGTCA 59.683 55.000 15.65 13.25 42.50 3.58
328 372 0.756294 ATGACTGGTCCACGTGTCAA 59.244 50.000 15.65 0.00 41.78 3.18
329 373 0.756294 TGACTGGTCCACGTGTCAAT 59.244 50.000 15.65 0.00 36.64 2.57
330 374 1.148310 GACTGGTCCACGTGTCAATG 58.852 55.000 15.65 4.28 0.00 2.82
331 375 0.756294 ACTGGTCCACGTGTCAATGA 59.244 50.000 15.65 0.55 0.00 2.57
332 376 1.148310 CTGGTCCACGTGTCAATGAC 58.852 55.000 15.65 13.48 0.00 3.06
333 377 0.250124 TGGTCCACGTGTCAATGACC 60.250 55.000 25.29 25.29 44.57 4.02
334 378 0.953960 GGTCCACGTGTCAATGACCC 60.954 60.000 22.95 10.47 39.65 4.46
335 379 0.250124 GTCCACGTGTCAATGACCCA 60.250 55.000 15.65 0.00 0.00 4.51
336 380 0.470341 TCCACGTGTCAATGACCCAA 59.530 50.000 15.65 0.00 0.00 4.12
337 381 1.134068 TCCACGTGTCAATGACCCAAA 60.134 47.619 15.65 0.00 0.00 3.28
338 382 1.266718 CCACGTGTCAATGACCCAAAG 59.733 52.381 15.65 0.00 0.00 2.77
339 383 1.266718 CACGTGTCAATGACCCAAAGG 59.733 52.381 11.24 0.51 40.04 3.11
340 384 0.240945 CGTGTCAATGACCCAAAGGC 59.759 55.000 11.24 0.00 36.11 4.35
341 385 1.327303 GTGTCAATGACCCAAAGGCA 58.673 50.000 11.24 0.00 36.11 4.75
342 386 1.270550 GTGTCAATGACCCAAAGGCAG 59.729 52.381 11.24 0.00 36.11 4.85
343 387 0.890683 GTCAATGACCCAAAGGCAGG 59.109 55.000 1.10 0.00 36.11 4.85
344 388 0.482446 TCAATGACCCAAAGGCAGGT 59.518 50.000 0.00 0.00 39.75 4.00
345 389 0.604578 CAATGACCCAAAGGCAGGTG 59.395 55.000 0.00 0.00 36.17 4.00
346 390 1.187567 AATGACCCAAAGGCAGGTGC 61.188 55.000 0.00 0.00 36.17 5.01
347 391 3.365265 GACCCAAAGGCAGGTGCG 61.365 66.667 0.00 0.00 43.26 5.34
348 392 4.204028 ACCCAAAGGCAGGTGCGT 62.204 61.111 0.00 0.00 43.26 5.24
349 393 3.365265 CCCAAAGGCAGGTGCGTC 61.365 66.667 0.00 0.00 43.26 5.19
350 394 3.365265 CCAAAGGCAGGTGCGTCC 61.365 66.667 0.00 0.00 43.26 4.79
351 395 3.365265 CAAAGGCAGGTGCGTCCC 61.365 66.667 0.00 0.00 43.26 4.46
352 396 3.570212 AAAGGCAGGTGCGTCCCT 61.570 61.111 0.00 0.00 43.26 4.20
589 2703 2.239654 GCTCTATATAATGGCAGGGGCA 59.760 50.000 0.00 0.00 43.71 5.36
616 2730 1.520787 CGGCCACAACGGATACCTC 60.521 63.158 2.24 0.00 36.56 3.85
626 2740 3.211718 ACGGATACCTCACCTCTACTC 57.788 52.381 0.00 0.00 0.00 2.59
627 2741 2.144730 CGGATACCTCACCTCTACTCG 58.855 57.143 0.00 0.00 0.00 4.18
650 2791 1.673767 TCTTCCCTTCCTTGGCTCAT 58.326 50.000 0.00 0.00 0.00 2.90
692 2833 0.321671 CTTCTCCGGCTCACCTTTCA 59.678 55.000 0.00 0.00 0.00 2.69
709 2850 5.658634 ACCTTTCAGCCTTTCTTTCTCTTTT 59.341 36.000 0.00 0.00 0.00 2.27
731 2872 6.545504 TTCTGTTCAAGTTTAGCTAGCTTG 57.454 37.500 24.88 23.27 40.47 4.01
739 2880 1.274703 TTAGCTAGCTTGCCAGGGCT 61.275 55.000 24.88 3.16 42.51 5.19
744 2885 2.257409 TAGCTTGCCAGGGCTGCTAC 62.257 60.000 23.95 7.54 44.41 3.58
751 2892 3.086600 AGGGCTGCTACCTGCTCC 61.087 66.667 0.00 0.00 43.37 4.70
752 2893 4.182433 GGGCTGCTACCTGCTCCC 62.182 72.222 0.00 0.00 43.66 4.30
753 2894 4.537433 GGCTGCTACCTGCTCCCG 62.537 72.222 0.00 0.00 43.37 5.14
772 2913 1.061131 CGCGCATCTCGATCTGTTTTT 59.939 47.619 8.75 0.00 41.67 1.94
806 2947 2.693762 GCATCCGAGCAAGCAAGCA 61.694 57.895 3.19 0.00 36.85 3.91
807 2948 1.878070 CATCCGAGCAAGCAAGCAA 59.122 52.632 3.19 0.00 36.85 3.91
808 2949 0.179171 CATCCGAGCAAGCAAGCAAG 60.179 55.000 3.19 0.00 36.85 4.01
809 2950 1.930908 ATCCGAGCAAGCAAGCAAGC 61.931 55.000 3.19 0.00 36.85 4.01
825 2966 5.541953 AGCAAGCTTCTCCATTTTCTTTT 57.458 34.783 0.00 0.00 0.00 2.27
847 2988 9.195411 CTTTTGCTTTTGATACACACATACATT 57.805 29.630 0.00 0.00 0.00 2.71
849 2990 7.686438 TGCTTTTGATACACACATACATTCT 57.314 32.000 0.00 0.00 0.00 2.40
850 2991 8.785329 TGCTTTTGATACACACATACATTCTA 57.215 30.769 0.00 0.00 0.00 2.10
851 2992 8.882736 TGCTTTTGATACACACATACATTCTAG 58.117 33.333 0.00 0.00 0.00 2.43
887 3029 4.252878 CTGTTTTTGTTGGTTGGAGCTTT 58.747 39.130 0.00 0.00 0.00 3.51
904 3046 4.572909 AGCTTTGATTTCCTTTGCATTCC 58.427 39.130 0.00 0.00 0.00 3.01
905 3047 4.285260 AGCTTTGATTTCCTTTGCATTCCT 59.715 37.500 0.00 0.00 0.00 3.36
906 3048 5.481473 AGCTTTGATTTCCTTTGCATTCCTA 59.519 36.000 0.00 0.00 0.00 2.94
907 3049 5.809051 GCTTTGATTTCCTTTGCATTCCTAG 59.191 40.000 0.00 0.00 0.00 3.02
913 3062 4.640771 TCCTTTGCATTCCTAGTTCAGT 57.359 40.909 0.00 0.00 0.00 3.41
930 3079 3.635331 TCAGTTCTCAACGTTTACTCGG 58.365 45.455 0.00 0.00 36.23 4.63
1248 3403 2.931713 CTATGTCGGCGTGGACGTCC 62.932 65.000 28.17 28.17 41.58 4.79
1265 3420 2.287069 CGTCCATGGACTCGATGTACTC 60.287 54.545 35.84 11.31 42.54 2.59
1266 3421 2.287069 GTCCATGGACTCGATGTACTCG 60.287 54.545 33.47 8.00 40.88 4.18
1456 3611 2.681778 AGCCACCGCTGCTCTACT 60.682 61.111 0.00 0.00 46.19 2.57
1457 3612 2.510238 GCCACCGCTGCTCTACTG 60.510 66.667 0.00 0.00 0.00 2.74
1458 3613 2.973899 CCACCGCTGCTCTACTGT 59.026 61.111 0.00 0.00 0.00 3.55
1459 3614 1.446792 CCACCGCTGCTCTACTGTG 60.447 63.158 0.00 0.00 0.00 3.66
1540 3709 4.781959 TTTACCGCGCCCGAGACG 62.782 66.667 0.00 0.00 36.29 4.18
1555 3725 1.227002 GACGGAATCCTGACGAGGC 60.227 63.158 0.00 0.00 39.57 4.70
1562 3732 4.154347 CCTGACGAGGCTGCTCCC 62.154 72.222 0.00 0.00 34.51 4.30
1594 3764 4.754372 ACAACAATGTACTGATGCAGTG 57.246 40.909 10.15 0.00 45.01 3.66
1599 3772 4.695455 ACAATGTACTGATGCAGTGTTACC 59.305 41.667 10.15 0.00 45.68 2.85
1600 3773 4.551702 ATGTACTGATGCAGTGTTACCA 57.448 40.909 10.15 0.68 45.01 3.25
1618 3791 8.398665 GTGTTACCACTTCTAATGATGATTTCC 58.601 37.037 0.00 0.00 38.61 3.13
1622 3795 8.655935 ACCACTTCTAATGATGATTTCCTTTT 57.344 30.769 0.00 0.00 0.00 2.27
1635 3808 7.038154 TGATTTCCTTTTAGTTCCTTGTGTG 57.962 36.000 0.00 0.00 0.00 3.82
1636 3809 4.911514 TTCCTTTTAGTTCCTTGTGTGC 57.088 40.909 0.00 0.00 0.00 4.57
1648 3823 2.421775 CCTTGTGTGCTTGTGTTGTGTA 59.578 45.455 0.00 0.00 0.00 2.90
1652 3827 2.031683 GTGTGCTTGTGTTGTGTACCTC 59.968 50.000 0.00 0.00 0.00 3.85
1653 3828 2.093181 TGTGCTTGTGTTGTGTACCTCT 60.093 45.455 0.00 0.00 0.00 3.69
1664 3839 5.010314 TGTTGTGTACCTCTGTTACGATCTT 59.990 40.000 0.00 0.00 0.00 2.40
1668 3843 6.071560 TGTGTACCTCTGTTACGATCTTCATT 60.072 38.462 0.00 0.00 0.00 2.57
1709 3884 2.128128 GCGTTCAGTTCGTGTGCG 60.128 61.111 0.00 0.00 39.92 5.34
1752 3930 4.421948 ACGTCCAGATTTCGTATGAACTC 58.578 43.478 6.88 6.88 36.05 3.01
1765 3943 2.440539 TGAACTCGAGAAGGAACAGC 57.559 50.000 21.68 0.00 0.00 4.40
1775 3991 0.039074 AAGGAACAGCTCGACTCACG 60.039 55.000 0.00 0.00 44.09 4.35
1856 4072 1.613630 ACTGCACCGGGAGATTCCT 60.614 57.895 6.32 0.00 36.57 3.36
1857 4073 1.201429 ACTGCACCGGGAGATTCCTT 61.201 55.000 6.32 0.00 36.57 3.36
1858 4074 0.035056 CTGCACCGGGAGATTCCTTT 60.035 55.000 6.32 0.00 36.57 3.11
1859 4075 0.035439 TGCACCGGGAGATTCCTTTC 60.035 55.000 6.32 0.00 36.57 2.62
1860 4076 0.748367 GCACCGGGAGATTCCTTTCC 60.748 60.000 6.32 0.00 36.57 3.13
1861 4077 0.912486 CACCGGGAGATTCCTTTCCT 59.088 55.000 6.32 0.00 36.57 3.36
1862 4078 1.282157 CACCGGGAGATTCCTTTCCTT 59.718 52.381 6.32 0.00 36.57 3.36
1863 4079 1.993301 ACCGGGAGATTCCTTTCCTTT 59.007 47.619 6.32 0.00 36.57 3.11
1864 4080 2.378886 ACCGGGAGATTCCTTTCCTTTT 59.621 45.455 6.32 0.00 36.57 2.27
1865 4081 3.181422 ACCGGGAGATTCCTTTCCTTTTT 60.181 43.478 6.32 0.00 36.57 1.94
1885 4101 2.203567 TTTTTGCGGGTGGGGGAG 60.204 61.111 0.00 0.00 0.00 4.30
1886 4102 2.769120 TTTTTGCGGGTGGGGGAGA 61.769 57.895 0.00 0.00 0.00 3.71
1887 4103 2.087857 TTTTTGCGGGTGGGGGAGAT 62.088 55.000 0.00 0.00 0.00 2.75
1888 4104 2.087857 TTTTGCGGGTGGGGGAGATT 62.088 55.000 0.00 0.00 0.00 2.40
1889 4105 2.493273 TTTGCGGGTGGGGGAGATTC 62.493 60.000 0.00 0.00 0.00 2.52
1890 4106 4.191015 GCGGGTGGGGGAGATTCC 62.191 72.222 0.00 0.00 35.23 3.01
1923 4139 1.620819 ACGGCACATGATATCTCCTCC 59.379 52.381 0.00 0.00 0.00 4.30
1929 4145 4.677514 GCACATGATATCTCCTCCAGATCG 60.678 50.000 0.00 0.00 41.39 3.69
1937 4153 2.432146 TCTCCTCCAGATCGAACAATGG 59.568 50.000 0.00 0.00 0.00 3.16
1938 4154 1.134401 TCCTCCAGATCGAACAATGGC 60.134 52.381 0.00 0.00 32.63 4.40
1939 4155 0.933097 CTCCAGATCGAACAATGGCG 59.067 55.000 0.00 0.00 32.63 5.69
1940 4156 1.089481 TCCAGATCGAACAATGGCGC 61.089 55.000 0.00 0.00 32.63 6.53
1941 4157 1.091771 CCAGATCGAACAATGGCGCT 61.092 55.000 7.64 0.00 0.00 5.92
1944 4160 1.980951 GATCGAACAATGGCGCTGCA 61.981 55.000 7.64 0.00 0.00 4.41
2018 4234 2.009051 TCAAAGATACGCCATGTGCAG 58.991 47.619 6.92 2.93 41.33 4.41
2019 4235 0.734889 AAAGATACGCCATGTGCAGC 59.265 50.000 6.92 0.00 41.33 5.25
2020 4236 1.097547 AAGATACGCCATGTGCAGCC 61.098 55.000 6.92 0.00 41.33 4.85
2021 4237 1.819208 GATACGCCATGTGCAGCCA 60.819 57.895 6.92 0.00 41.33 4.75
2042 4258 5.122396 GCCACCATCTAACACTTGTTTAGAG 59.878 44.000 0.00 0.00 39.31 2.43
2060 4276 3.428532 AGAGAAACTAAGCTGTCCCGTA 58.571 45.455 0.00 0.00 0.00 4.02
2061 4277 3.193056 AGAGAAACTAAGCTGTCCCGTAC 59.807 47.826 0.00 0.00 0.00 3.67
2086 4302 1.014352 ACACGAGTCACAAAACAGCC 58.986 50.000 0.00 0.00 0.00 4.85
2102 4318 1.372307 GCCATGGCTTTGCAGGTTT 59.628 52.632 29.98 0.00 38.26 3.27
2103 4319 0.607620 GCCATGGCTTTGCAGGTTTA 59.392 50.000 29.98 0.00 38.26 2.01
2104 4320 1.207811 GCCATGGCTTTGCAGGTTTAT 59.792 47.619 29.98 0.00 38.26 1.40
2141 4357 3.919827 ACGAAAACAAAAACTCTCGTCG 58.080 40.909 0.00 0.00 34.68 5.12
2190 4406 5.106396 GGAGACAATGAAGTGTGAATTCTGG 60.106 44.000 7.05 0.00 0.00 3.86
2191 4407 4.763793 AGACAATGAAGTGTGAATTCTGGG 59.236 41.667 7.05 0.00 0.00 4.45
2192 4408 4.728772 ACAATGAAGTGTGAATTCTGGGA 58.271 39.130 7.05 0.00 0.00 4.37
2193 4409 5.139727 ACAATGAAGTGTGAATTCTGGGAA 58.860 37.500 7.05 0.00 0.00 3.97
2194 4410 5.010012 ACAATGAAGTGTGAATTCTGGGAAC 59.990 40.000 7.05 0.00 0.00 3.62
2195 4411 3.138304 TGAAGTGTGAATTCTGGGAACG 58.862 45.455 7.05 0.00 0.00 3.95
2196 4412 3.181459 TGAAGTGTGAATTCTGGGAACGA 60.181 43.478 7.05 0.00 0.00 3.85
2197 4413 3.045601 AGTGTGAATTCTGGGAACGAG 57.954 47.619 7.05 0.00 0.00 4.18
2198 4414 2.632996 AGTGTGAATTCTGGGAACGAGA 59.367 45.455 7.05 0.00 0.00 4.04
2199 4415 2.996621 GTGTGAATTCTGGGAACGAGAG 59.003 50.000 7.05 0.00 0.00 3.20
2200 4416 2.028112 TGTGAATTCTGGGAACGAGAGG 60.028 50.000 7.05 0.00 0.00 3.69
2201 4417 1.066143 TGAATTCTGGGAACGAGAGGC 60.066 52.381 7.05 0.00 0.00 4.70
2203 4419 0.970937 ATTCTGGGAACGAGAGGCGA 60.971 55.000 0.00 0.00 44.57 5.54
2204 4420 1.183030 TTCTGGGAACGAGAGGCGAA 61.183 55.000 0.00 0.00 44.57 4.70
2205 4421 1.153745 CTGGGAACGAGAGGCGAAG 60.154 63.158 0.00 0.00 44.57 3.79
2206 4422 2.184579 GGGAACGAGAGGCGAAGG 59.815 66.667 0.00 0.00 44.57 3.46
2207 4423 2.348888 GGGAACGAGAGGCGAAGGA 61.349 63.158 0.00 0.00 44.57 3.36
2208 4424 1.590147 GGAACGAGAGGCGAAGGAA 59.410 57.895 0.00 0.00 44.57 3.36
2209 4425 0.458716 GGAACGAGAGGCGAAGGAAG 60.459 60.000 0.00 0.00 44.57 3.46
2210 4426 1.079317 GAACGAGAGGCGAAGGAAGC 61.079 60.000 0.00 0.00 44.57 3.86
2211 4427 2.580867 CGAGAGGCGAAGGAAGCG 60.581 66.667 0.00 0.00 44.57 4.68
2212 4428 2.885861 GAGAGGCGAAGGAAGCGA 59.114 61.111 0.00 0.00 35.00 4.93
2213 4429 1.226831 GAGAGGCGAAGGAAGCGAG 60.227 63.158 0.00 0.00 35.00 5.03
2214 4430 2.202810 GAGGCGAAGGAAGCGAGG 60.203 66.667 0.00 0.00 35.00 4.63
2215 4431 3.724914 GAGGCGAAGGAAGCGAGGG 62.725 68.421 0.00 0.00 35.00 4.30
2216 4432 3.771160 GGCGAAGGAAGCGAGGGA 61.771 66.667 0.00 0.00 35.00 4.20
2217 4433 2.264794 GCGAAGGAAGCGAGGGAA 59.735 61.111 0.00 0.00 0.00 3.97
2218 4434 1.375523 GCGAAGGAAGCGAGGGAAA 60.376 57.895 0.00 0.00 0.00 3.13
2219 4435 0.953960 GCGAAGGAAGCGAGGGAAAA 60.954 55.000 0.00 0.00 0.00 2.29
2220 4436 1.519408 CGAAGGAAGCGAGGGAAAAA 58.481 50.000 0.00 0.00 0.00 1.94
2221 4437 1.464997 CGAAGGAAGCGAGGGAAAAAG 59.535 52.381 0.00 0.00 0.00 2.27
2222 4438 1.813178 GAAGGAAGCGAGGGAAAAAGG 59.187 52.381 0.00 0.00 0.00 3.11
2223 4439 0.609406 AGGAAGCGAGGGAAAAAGGC 60.609 55.000 0.00 0.00 0.00 4.35
2224 4440 1.502190 GAAGCGAGGGAAAAAGGCG 59.498 57.895 0.00 0.00 0.00 5.52
2226 4442 4.460873 GCGAGGGAAAAAGGCGCG 62.461 66.667 0.00 0.00 38.24 6.86
2227 4443 2.740826 CGAGGGAAAAAGGCGCGA 60.741 61.111 12.10 0.00 0.00 5.87
2228 4444 2.740714 CGAGGGAAAAAGGCGCGAG 61.741 63.158 12.10 0.00 0.00 5.03
2229 4445 1.375523 GAGGGAAAAAGGCGCGAGA 60.376 57.895 12.10 0.00 0.00 4.04
2230 4446 1.362406 GAGGGAAAAAGGCGCGAGAG 61.362 60.000 12.10 0.00 0.00 3.20
2231 4447 2.399356 GGGAAAAAGGCGCGAGAGG 61.399 63.158 12.10 0.00 0.00 3.69
2232 4448 2.481009 GAAAAAGGCGCGAGAGGC 59.519 61.111 12.10 0.00 38.69 4.70
2239 4455 4.742201 GCGCGAGAGGCCACAGAA 62.742 66.667 12.10 0.00 38.94 3.02
2240 4456 2.048222 CGCGAGAGGCCACAGAAA 60.048 61.111 5.01 0.00 38.94 2.52
2241 4457 2.383527 CGCGAGAGGCCACAGAAAC 61.384 63.158 5.01 0.00 38.94 2.78
2242 4458 2.383527 GCGAGAGGCCACAGAAACG 61.384 63.158 5.01 1.69 34.80 3.60
2243 4459 1.738099 CGAGAGGCCACAGAAACGG 60.738 63.158 5.01 0.00 0.00 4.44
2249 4465 3.283684 CCACAGAAACGGCGCCAA 61.284 61.111 28.98 0.00 0.00 4.52
2250 4466 2.718731 CACAGAAACGGCGCCAAA 59.281 55.556 28.98 0.00 0.00 3.28
2251 4467 1.064946 CACAGAAACGGCGCCAAAA 59.935 52.632 28.98 0.00 0.00 2.44
2252 4468 0.318614 CACAGAAACGGCGCCAAAAT 60.319 50.000 28.98 9.23 0.00 1.82
2253 4469 0.387565 ACAGAAACGGCGCCAAAATT 59.612 45.000 28.98 14.93 0.00 1.82
2254 4470 0.783579 CAGAAACGGCGCCAAAATTG 59.216 50.000 28.98 14.78 0.00 2.32
2255 4471 0.671251 AGAAACGGCGCCAAAATTGA 59.329 45.000 28.98 0.00 0.00 2.57
2256 4472 1.272212 AGAAACGGCGCCAAAATTGAT 59.728 42.857 28.98 0.00 0.00 2.57
2257 4473 1.389784 GAAACGGCGCCAAAATTGATG 59.610 47.619 28.98 9.11 0.00 3.07
2258 4474 0.389687 AACGGCGCCAAAATTGATGG 60.390 50.000 28.98 8.28 41.08 3.51
2259 4475 1.519013 CGGCGCCAAAATTGATGGG 60.519 57.895 28.98 0.37 38.44 4.00
2260 4476 1.896694 GGCGCCAAAATTGATGGGA 59.103 52.632 24.80 0.00 38.44 4.37
2261 4477 0.248843 GGCGCCAAAATTGATGGGAA 59.751 50.000 24.80 0.00 38.44 3.97
2262 4478 1.643880 GCGCCAAAATTGATGGGAAG 58.356 50.000 11.41 0.00 38.44 3.46
2263 4479 1.740043 GCGCCAAAATTGATGGGAAGG 60.740 52.381 11.41 0.00 38.44 3.46
2264 4480 1.824230 CGCCAAAATTGATGGGAAGGA 59.176 47.619 11.41 0.00 38.44 3.36
2265 4481 2.159198 CGCCAAAATTGATGGGAAGGAG 60.159 50.000 11.41 0.00 38.44 3.69
2266 4482 2.169144 GCCAAAATTGATGGGAAGGAGG 59.831 50.000 11.41 0.00 38.44 4.30
2267 4483 3.444029 CCAAAATTGATGGGAAGGAGGT 58.556 45.455 3.14 0.00 34.15 3.85
2268 4484 3.448660 CCAAAATTGATGGGAAGGAGGTC 59.551 47.826 3.14 0.00 34.15 3.85
2269 4485 3.388552 AAATTGATGGGAAGGAGGTCC 57.611 47.619 0.00 0.00 36.90 4.46
2291 4507 3.753434 CGCTCAGCAGGGACGACT 61.753 66.667 0.00 0.00 34.38 4.18
2292 4508 2.125753 GCTCAGCAGGGACGACTG 60.126 66.667 0.00 0.00 41.41 3.51
2298 4514 4.803426 CAGGGACGACTGCTCCGC 62.803 72.222 0.00 0.00 0.00 5.54
2300 4516 4.500116 GGGACGACTGCTCCGCTC 62.500 72.222 0.00 0.00 0.00 5.03
2301 4517 4.500116 GGACGACTGCTCCGCTCC 62.500 72.222 0.00 0.00 0.00 4.70
2302 4518 3.444805 GACGACTGCTCCGCTCCT 61.445 66.667 0.00 0.00 0.00 3.69
2303 4519 2.045242 ACGACTGCTCCGCTCCTA 60.045 61.111 0.00 0.00 0.00 2.94
2304 4520 2.054140 GACGACTGCTCCGCTCCTAG 62.054 65.000 0.00 0.00 0.00 3.02
2305 4521 2.115911 CGACTGCTCCGCTCCTAGT 61.116 63.158 0.00 0.00 0.00 2.57
2306 4522 1.731093 GACTGCTCCGCTCCTAGTC 59.269 63.158 0.00 0.00 0.00 2.59
2307 4523 1.730451 GACTGCTCCGCTCCTAGTCC 61.730 65.000 0.00 0.00 33.44 3.85
2308 4524 1.454847 CTGCTCCGCTCCTAGTCCT 60.455 63.158 0.00 0.00 0.00 3.85
2309 4525 1.000486 TGCTCCGCTCCTAGTCCTT 60.000 57.895 0.00 0.00 0.00 3.36
2310 4526 0.614979 TGCTCCGCTCCTAGTCCTTT 60.615 55.000 0.00 0.00 0.00 3.11
2311 4527 0.179097 GCTCCGCTCCTAGTCCTTTG 60.179 60.000 0.00 0.00 0.00 2.77
2312 4528 1.187087 CTCCGCTCCTAGTCCTTTGT 58.813 55.000 0.00 0.00 0.00 2.83
2313 4529 0.895530 TCCGCTCCTAGTCCTTTGTG 59.104 55.000 0.00 0.00 0.00 3.33
2314 4530 0.895530 CCGCTCCTAGTCCTTTGTGA 59.104 55.000 0.00 0.00 0.00 3.58
2315 4531 1.482593 CCGCTCCTAGTCCTTTGTGAT 59.517 52.381 0.00 0.00 0.00 3.06
2316 4532 2.544685 CGCTCCTAGTCCTTTGTGATG 58.455 52.381 0.00 0.00 0.00 3.07
2317 4533 2.739932 CGCTCCTAGTCCTTTGTGATGG 60.740 54.545 0.00 0.00 0.00 3.51
2318 4534 2.501723 GCTCCTAGTCCTTTGTGATGGA 59.498 50.000 0.00 0.00 0.00 3.41
2319 4535 3.055094 GCTCCTAGTCCTTTGTGATGGAA 60.055 47.826 0.00 0.00 33.72 3.53
2320 4536 4.764172 CTCCTAGTCCTTTGTGATGGAAG 58.236 47.826 0.00 0.00 33.72 3.46
2321 4537 4.425772 TCCTAGTCCTTTGTGATGGAAGA 58.574 43.478 0.00 0.00 33.72 2.87
2322 4538 4.844085 TCCTAGTCCTTTGTGATGGAAGAA 59.156 41.667 0.00 0.00 33.72 2.52
2323 4539 5.046304 TCCTAGTCCTTTGTGATGGAAGAAG 60.046 44.000 0.00 0.00 33.72 2.85
2324 4540 4.713792 AGTCCTTTGTGATGGAAGAAGT 57.286 40.909 0.00 0.00 33.72 3.01
2325 4541 5.825593 AGTCCTTTGTGATGGAAGAAGTA 57.174 39.130 0.00 0.00 33.72 2.24
2326 4542 5.799213 AGTCCTTTGTGATGGAAGAAGTAG 58.201 41.667 0.00 0.00 33.72 2.57
2327 4543 4.393371 GTCCTTTGTGATGGAAGAAGTAGC 59.607 45.833 0.00 0.00 33.72 3.58
2328 4544 3.691609 CCTTTGTGATGGAAGAAGTAGCC 59.308 47.826 0.00 0.00 0.00 3.93
2329 4545 4.566488 CCTTTGTGATGGAAGAAGTAGCCT 60.566 45.833 0.00 0.00 0.00 4.58
2330 4546 3.616956 TGTGATGGAAGAAGTAGCCTG 57.383 47.619 0.00 0.00 0.00 4.85
2331 4547 2.284190 GTGATGGAAGAAGTAGCCTGC 58.716 52.381 0.00 0.00 0.00 4.85
2332 4548 1.134699 TGATGGAAGAAGTAGCCTGCG 60.135 52.381 0.00 0.00 0.00 5.18
2333 4549 0.905357 ATGGAAGAAGTAGCCTGCGT 59.095 50.000 0.00 0.00 0.00 5.24
2334 4550 0.037326 TGGAAGAAGTAGCCTGCGTG 60.037 55.000 0.00 0.00 0.00 5.34
2335 4551 0.246635 GGAAGAAGTAGCCTGCGTGA 59.753 55.000 0.00 0.00 0.00 4.35
2336 4552 1.337823 GGAAGAAGTAGCCTGCGTGAA 60.338 52.381 0.00 0.00 0.00 3.18
2337 4553 2.622436 GAAGAAGTAGCCTGCGTGAAT 58.378 47.619 0.00 0.00 0.00 2.57
2338 4554 3.430374 GGAAGAAGTAGCCTGCGTGAATA 60.430 47.826 0.00 0.00 0.00 1.75
2339 4555 3.887621 AGAAGTAGCCTGCGTGAATAA 57.112 42.857 0.00 0.00 0.00 1.40
2340 4556 4.202245 AGAAGTAGCCTGCGTGAATAAA 57.798 40.909 0.00 0.00 0.00 1.40
2341 4557 4.575885 AGAAGTAGCCTGCGTGAATAAAA 58.424 39.130 0.00 0.00 0.00 1.52
2342 4558 4.392138 AGAAGTAGCCTGCGTGAATAAAAC 59.608 41.667 0.00 0.00 0.00 2.43
2343 4559 3.670625 AGTAGCCTGCGTGAATAAAACA 58.329 40.909 0.00 0.00 0.00 2.83
2344 4560 2.989422 AGCCTGCGTGAATAAAACAC 57.011 45.000 0.00 0.00 35.26 3.32
2345 4561 2.504367 AGCCTGCGTGAATAAAACACT 58.496 42.857 0.00 0.00 36.29 3.55
2346 4562 2.226437 AGCCTGCGTGAATAAAACACTG 59.774 45.455 0.00 0.00 36.29 3.66
2347 4563 2.668279 GCCTGCGTGAATAAAACACTGG 60.668 50.000 0.00 0.00 36.29 4.00
2348 4564 2.811431 CCTGCGTGAATAAAACACTGGA 59.189 45.455 0.00 0.00 36.29 3.86
2349 4565 3.252215 CCTGCGTGAATAAAACACTGGAA 59.748 43.478 0.00 0.00 36.29 3.53
2350 4566 4.082787 CCTGCGTGAATAAAACACTGGAAT 60.083 41.667 0.00 0.00 36.29 3.01
2351 4567 5.446143 TGCGTGAATAAAACACTGGAATT 57.554 34.783 0.00 0.00 36.29 2.17
2352 4568 5.218885 TGCGTGAATAAAACACTGGAATTG 58.781 37.500 0.00 0.00 36.29 2.32
2353 4569 5.009110 TGCGTGAATAAAACACTGGAATTGA 59.991 36.000 0.00 0.00 36.29 2.57
2354 4570 6.092748 GCGTGAATAAAACACTGGAATTGAT 58.907 36.000 0.00 0.00 36.29 2.57
2355 4571 6.586082 GCGTGAATAAAACACTGGAATTGATT 59.414 34.615 0.00 0.00 36.29 2.57
2356 4572 7.753132 GCGTGAATAAAACACTGGAATTGATTA 59.247 33.333 0.00 0.00 36.29 1.75
2357 4573 9.619316 CGTGAATAAAACACTGGAATTGATTAA 57.381 29.630 0.00 0.00 36.29 1.40
2366 4582 9.758651 AACACTGGAATTGATTAAACTTTTACC 57.241 29.630 0.00 0.00 0.00 2.85
2367 4583 8.919145 ACACTGGAATTGATTAAACTTTTACCA 58.081 29.630 0.00 0.00 0.00 3.25
2368 4584 9.927668 CACTGGAATTGATTAAACTTTTACCAT 57.072 29.630 0.00 0.00 0.00 3.55
2376 4592 9.638239 TTGATTAAACTTTTACCATCAGATTGC 57.362 29.630 0.00 0.00 0.00 3.56
2377 4593 9.023962 TGATTAAACTTTTACCATCAGATTGCT 57.976 29.630 0.00 0.00 0.00 3.91
2378 4594 9.860898 GATTAAACTTTTACCATCAGATTGCTT 57.139 29.630 0.00 0.00 0.00 3.91
2382 4598 8.635765 AACTTTTACCATCAGATTGCTTTAGA 57.364 30.769 0.00 0.00 0.00 2.10
2383 4599 8.635765 ACTTTTACCATCAGATTGCTTTAGAA 57.364 30.769 0.00 0.00 0.00 2.10
2384 4600 8.515414 ACTTTTACCATCAGATTGCTTTAGAAC 58.485 33.333 0.00 0.00 0.00 3.01
2385 4601 8.635765 TTTTACCATCAGATTGCTTTAGAACT 57.364 30.769 0.00 0.00 0.00 3.01
2386 4602 8.635765 TTTACCATCAGATTGCTTTAGAACTT 57.364 30.769 0.00 0.00 0.00 2.66
2387 4603 6.506500 ACCATCAGATTGCTTTAGAACTTG 57.493 37.500 0.00 0.00 0.00 3.16
2388 4604 6.240894 ACCATCAGATTGCTTTAGAACTTGA 58.759 36.000 0.00 0.00 0.00 3.02
2389 4605 6.888632 ACCATCAGATTGCTTTAGAACTTGAT 59.111 34.615 0.00 0.00 0.00 2.57
2390 4606 7.066766 ACCATCAGATTGCTTTAGAACTTGATC 59.933 37.037 0.00 0.00 0.00 2.92
2391 4607 7.066645 CCATCAGATTGCTTTAGAACTTGATCA 59.933 37.037 0.00 0.00 0.00 2.92
2392 4608 7.984422 TCAGATTGCTTTAGAACTTGATCAA 57.016 32.000 8.12 8.12 0.00 2.57
2393 4609 8.394971 TCAGATTGCTTTAGAACTTGATCAAA 57.605 30.769 9.88 0.00 0.00 2.69
2394 4610 9.017509 TCAGATTGCTTTAGAACTTGATCAAAT 57.982 29.630 9.88 0.00 0.00 2.32
2395 4611 9.635520 CAGATTGCTTTAGAACTTGATCAAATT 57.364 29.630 9.88 5.60 0.00 1.82
2398 4614 8.816640 TTGCTTTAGAACTTGATCAAATTTCC 57.183 30.769 19.13 3.79 0.00 3.13
2399 4615 7.378181 TGCTTTAGAACTTGATCAAATTTCCC 58.622 34.615 19.13 3.20 0.00 3.97
2400 4616 7.233348 TGCTTTAGAACTTGATCAAATTTCCCT 59.767 33.333 19.13 9.22 0.00 4.20
2401 4617 8.090831 GCTTTAGAACTTGATCAAATTTCCCTT 58.909 33.333 19.13 9.07 0.00 3.95
2402 4618 9.987272 CTTTAGAACTTGATCAAATTTCCCTTT 57.013 29.630 19.13 8.82 0.00 3.11
2425 4641 5.407407 TTTTCTCATCGAAGAAGTAGCCT 57.593 39.130 0.00 0.00 43.58 4.58
2426 4642 4.377839 TTCTCATCGAAGAAGTAGCCTG 57.622 45.455 0.00 0.00 43.58 4.85
2427 4643 2.099921 TCTCATCGAAGAAGTAGCCTGC 59.900 50.000 0.00 0.00 43.58 4.85
2428 4644 2.100584 CTCATCGAAGAAGTAGCCTGCT 59.899 50.000 0.00 0.00 43.58 4.24
2429 4645 2.159184 TCATCGAAGAAGTAGCCTGCTG 60.159 50.000 0.97 0.00 43.58 4.41
2430 4646 1.545841 TCGAAGAAGTAGCCTGCTGA 58.454 50.000 0.97 0.00 0.00 4.26
2431 4647 1.893137 TCGAAGAAGTAGCCTGCTGAA 59.107 47.619 0.97 0.00 0.00 3.02
2432 4648 1.996191 CGAAGAAGTAGCCTGCTGAAC 59.004 52.381 0.97 0.00 0.00 3.18
2433 4649 2.353208 CGAAGAAGTAGCCTGCTGAACT 60.353 50.000 0.97 0.00 0.00 3.01
2434 4650 3.258228 GAAGAAGTAGCCTGCTGAACTC 58.742 50.000 0.97 0.00 0.00 3.01
2435 4651 1.203523 AGAAGTAGCCTGCTGAACTCG 59.796 52.381 0.97 0.00 0.00 4.18
2436 4652 0.247736 AAGTAGCCTGCTGAACTCGG 59.752 55.000 0.97 0.00 0.00 4.63
2437 4653 0.612174 AGTAGCCTGCTGAACTCGGA 60.612 55.000 0.97 0.00 0.00 4.55
2438 4654 0.461961 GTAGCCTGCTGAACTCGGAT 59.538 55.000 0.97 0.00 0.00 4.18
2439 4655 0.747255 TAGCCTGCTGAACTCGGATC 59.253 55.000 0.97 0.00 0.00 3.36
2440 4656 1.219124 GCCTGCTGAACTCGGATCA 59.781 57.895 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.710816 GTCCCCTGCTCTGCTACTAT 58.289 55.000 0.00 0.00 0.00 2.12
66 67 0.752009 CGTCCCCTGCTCTGCTACTA 60.752 60.000 0.00 0.00 0.00 1.82
67 68 2.055042 CGTCCCCTGCTCTGCTACT 61.055 63.158 0.00 0.00 0.00 2.57
69 70 2.052690 GTCGTCCCCTGCTCTGCTA 61.053 63.158 0.00 0.00 0.00 3.49
70 71 3.386237 GTCGTCCCCTGCTCTGCT 61.386 66.667 0.00 0.00 0.00 4.24
71 72 2.456287 AAAGTCGTCCCCTGCTCTGC 62.456 60.000 0.00 0.00 0.00 4.26
72 73 0.390472 GAAAGTCGTCCCCTGCTCTG 60.390 60.000 0.00 0.00 0.00 3.35
73 74 1.545706 GGAAAGTCGTCCCCTGCTCT 61.546 60.000 0.00 0.00 0.00 4.09
74 75 1.079057 GGAAAGTCGTCCCCTGCTC 60.079 63.158 0.00 0.00 0.00 4.26
75 76 1.841556 TGGAAAGTCGTCCCCTGCT 60.842 57.895 0.00 0.00 36.80 4.24
160 204 0.035056 CAAGGCAAGGGGGACTACTG 60.035 60.000 0.00 0.00 0.00 2.74
245 289 2.046314 ACCAAAGCATCGTCCGGG 60.046 61.111 0.00 0.00 0.00 5.73
246 290 3.039202 GCACCAAAGCATCGTCCGG 62.039 63.158 0.00 0.00 0.00 5.14
247 291 2.480555 GCACCAAAGCATCGTCCG 59.519 61.111 0.00 0.00 0.00 4.79
248 292 1.244019 AAGGCACCAAAGCATCGTCC 61.244 55.000 0.00 0.00 35.83 4.79
249 293 1.448985 TAAGGCACCAAAGCATCGTC 58.551 50.000 0.00 0.00 35.83 4.20
250 294 1.812571 CTTAAGGCACCAAAGCATCGT 59.187 47.619 0.00 0.00 35.83 3.73
251 295 1.133025 CCTTAAGGCACCAAAGCATCG 59.867 52.381 9.00 0.00 35.83 3.84
252 296 2.947448 CCTTAAGGCACCAAAGCATC 57.053 50.000 9.00 0.00 35.83 3.91
267 311 7.201974 GTCATAGACATAAAGGTAGGTGCCTTA 60.202 40.741 0.00 0.00 38.91 2.69
268 312 6.408206 GTCATAGACATAAAGGTAGGTGCCTT 60.408 42.308 0.00 0.00 40.22 4.35
269 313 5.070580 GTCATAGACATAAAGGTAGGTGCCT 59.929 44.000 0.00 0.00 34.81 4.75
270 314 5.163343 TGTCATAGACATAAAGGTAGGTGCC 60.163 44.000 0.00 0.00 37.67 5.01
271 315 5.914033 TGTCATAGACATAAAGGTAGGTGC 58.086 41.667 0.00 0.00 37.67 5.01
284 328 0.546122 GGGCCCACATGTCATAGACA 59.454 55.000 19.95 1.95 46.90 3.41
285 329 0.546122 TGGGCCCACATGTCATAGAC 59.454 55.000 24.45 0.00 0.00 2.59
286 330 1.064758 GTTGGGCCCACATGTCATAGA 60.065 52.381 28.70 1.58 0.00 1.98
287 331 1.340893 TGTTGGGCCCACATGTCATAG 60.341 52.381 28.70 0.00 0.00 2.23
288 332 0.701147 TGTTGGGCCCACATGTCATA 59.299 50.000 28.70 3.51 0.00 2.15
289 333 0.612732 CTGTTGGGCCCACATGTCAT 60.613 55.000 28.70 0.00 0.00 3.06
290 334 1.228521 CTGTTGGGCCCACATGTCA 60.229 57.895 28.70 17.15 0.00 3.58
291 335 0.323725 ATCTGTTGGGCCCACATGTC 60.324 55.000 28.70 13.28 0.00 3.06
292 336 0.612732 CATCTGTTGGGCCCACATGT 60.613 55.000 28.70 13.82 0.00 3.21
293 337 0.323633 TCATCTGTTGGGCCCACATG 60.324 55.000 28.70 22.88 0.00 3.21
294 338 0.323725 GTCATCTGTTGGGCCCACAT 60.324 55.000 28.70 11.68 0.00 3.21
295 339 1.074775 GTCATCTGTTGGGCCCACA 59.925 57.895 28.70 23.95 0.00 4.17
296 340 0.962356 CAGTCATCTGTTGGGCCCAC 60.962 60.000 28.70 20.43 36.97 4.61
297 341 1.379916 CAGTCATCTGTTGGGCCCA 59.620 57.895 24.45 24.45 36.97 5.36
298 342 1.379044 CCAGTCATCTGTTGGGCCC 60.379 63.158 17.59 17.59 39.82 5.80
299 343 0.678048 GACCAGTCATCTGTTGGGCC 60.678 60.000 0.00 0.00 39.82 5.80
300 344 0.678048 GGACCAGTCATCTGTTGGGC 60.678 60.000 0.00 5.15 39.39 5.36
301 345 0.692476 TGGACCAGTCATCTGTTGGG 59.308 55.000 0.00 0.00 39.82 4.12
302 346 1.813513 GTGGACCAGTCATCTGTTGG 58.186 55.000 0.00 0.00 39.82 3.77
303 347 1.270305 ACGTGGACCAGTCATCTGTTG 60.270 52.381 0.00 0.00 39.82 3.33
304 348 1.048601 ACGTGGACCAGTCATCTGTT 58.951 50.000 0.00 0.00 39.82 3.16
305 349 0.318441 CACGTGGACCAGTCATCTGT 59.682 55.000 7.95 0.00 39.82 3.41
306 350 0.318441 ACACGTGGACCAGTCATCTG 59.682 55.000 21.57 0.00 41.01 2.90
307 351 0.603569 GACACGTGGACCAGTCATCT 59.396 55.000 21.57 0.00 0.00 2.90
308 352 0.317160 TGACACGTGGACCAGTCATC 59.683 55.000 21.57 5.28 36.20 2.92
309 353 0.756294 TTGACACGTGGACCAGTCAT 59.244 50.000 21.57 0.00 40.32 3.06
310 354 0.756294 ATTGACACGTGGACCAGTCA 59.244 50.000 21.57 10.36 39.06 3.41
311 355 1.148310 CATTGACACGTGGACCAGTC 58.852 55.000 21.57 7.59 0.00 3.51
312 356 0.756294 TCATTGACACGTGGACCAGT 59.244 50.000 21.57 8.62 0.00 4.00
313 357 1.148310 GTCATTGACACGTGGACCAG 58.852 55.000 21.57 6.86 32.09 4.00
314 358 0.250124 GGTCATTGACACGTGGACCA 60.250 55.000 26.40 16.53 45.70 4.02
315 359 0.953960 GGGTCATTGACACGTGGACC 60.954 60.000 24.50 24.50 45.68 4.46
316 360 0.250124 TGGGTCATTGACACGTGGAC 60.250 55.000 21.57 16.01 39.08 4.02
317 361 0.470341 TTGGGTCATTGACACGTGGA 59.530 50.000 21.57 3.71 39.08 4.02
318 362 1.266718 CTTTGGGTCATTGACACGTGG 59.733 52.381 21.57 0.90 39.08 4.94
319 363 1.266718 CCTTTGGGTCATTGACACGTG 59.733 52.381 15.48 15.48 39.08 4.49
320 364 1.604604 CCTTTGGGTCATTGACACGT 58.395 50.000 18.09 0.00 39.08 4.49
321 365 0.240945 GCCTTTGGGTCATTGACACG 59.759 55.000 18.09 3.47 39.08 4.49
322 366 1.270550 CTGCCTTTGGGTCATTGACAC 59.729 52.381 18.09 15.33 36.36 3.67
323 367 1.619654 CTGCCTTTGGGTCATTGACA 58.380 50.000 18.09 0.00 33.68 3.58
324 368 0.890683 CCTGCCTTTGGGTCATTGAC 59.109 55.000 8.34 8.34 34.45 3.18
325 369 0.482446 ACCTGCCTTTGGGTCATTGA 59.518 50.000 0.00 0.00 34.45 2.57
326 370 0.604578 CACCTGCCTTTGGGTCATTG 59.395 55.000 0.00 0.00 32.95 2.82
327 371 1.187567 GCACCTGCCTTTGGGTCATT 61.188 55.000 0.00 0.00 32.95 2.57
328 372 1.607467 GCACCTGCCTTTGGGTCAT 60.607 57.895 0.00 0.00 32.95 3.06
329 373 2.203480 GCACCTGCCTTTGGGTCA 60.203 61.111 0.00 0.00 32.95 4.02
330 374 3.365265 CGCACCTGCCTTTGGGTC 61.365 66.667 0.00 0.00 37.91 4.46
331 375 4.204028 ACGCACCTGCCTTTGGGT 62.204 61.111 0.00 0.00 37.91 4.51
332 376 3.365265 GACGCACCTGCCTTTGGG 61.365 66.667 0.00 0.00 37.91 4.12
333 377 3.365265 GGACGCACCTGCCTTTGG 61.365 66.667 0.00 0.00 37.91 3.28
334 378 3.365265 GGGACGCACCTGCCTTTG 61.365 66.667 0.00 0.00 38.98 2.77
335 379 3.570212 AGGGACGCACCTGCCTTT 61.570 61.111 0.00 0.00 40.04 3.11
478 2592 4.280019 GTGGTGGTGGGGGTGGAC 62.280 72.222 0.00 0.00 0.00 4.02
481 2595 4.596585 GTGGTGGTGGTGGGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
483 2597 3.808218 CTTGTGGTGGTGGTGGGGG 62.808 68.421 0.00 0.00 0.00 5.40
484 2598 2.203480 CTTGTGGTGGTGGTGGGG 60.203 66.667 0.00 0.00 0.00 4.96
485 2599 1.827789 CACTTGTGGTGGTGGTGGG 60.828 63.158 0.00 0.00 41.90 4.61
486 2600 3.840437 CACTTGTGGTGGTGGTGG 58.160 61.111 0.00 0.00 41.90 4.61
497 2611 1.052124 TCCTCCCAACGGACACTTGT 61.052 55.000 0.00 0.00 33.32 3.16
616 2730 2.424246 GGGAAGAAGACGAGTAGAGGTG 59.576 54.545 0.00 0.00 0.00 4.00
626 2740 1.946283 GCCAAGGAAGGGAAGAAGACG 60.946 57.143 0.00 0.00 0.00 4.18
627 2741 1.352687 AGCCAAGGAAGGGAAGAAGAC 59.647 52.381 0.00 0.00 0.00 3.01
650 2791 1.615883 AGAAAAGACGAGCAGAGCTGA 59.384 47.619 0.85 0.00 39.88 4.26
692 2833 5.888161 TGAACAGAAAAGAGAAAGAAAGGCT 59.112 36.000 0.00 0.00 0.00 4.58
709 2850 4.452455 GCAAGCTAGCTAAACTTGAACAGA 59.548 41.667 28.03 0.00 42.71 3.41
750 2891 2.732468 CAGATCGAGATGCGCGGG 60.732 66.667 8.83 0.00 40.61 6.13
751 2892 1.148157 AAACAGATCGAGATGCGCGG 61.148 55.000 8.83 0.00 40.61 6.46
752 2893 0.647410 AAAACAGATCGAGATGCGCG 59.353 50.000 0.00 0.00 40.61 6.86
753 2894 2.813779 AAAAACAGATCGAGATGCGC 57.186 45.000 0.00 0.00 40.61 6.09
754 2895 4.316722 CGACTAAAAACAGATCGAGATGCG 60.317 45.833 0.00 0.00 42.69 4.73
772 2913 3.935828 CGGATGCAGATCTAGATCGACTA 59.064 47.826 23.77 13.72 42.48 2.59
806 2947 5.541953 AGCAAAAGAAAATGGAGAAGCTT 57.458 34.783 0.00 0.00 0.00 3.74
807 2948 5.541953 AAGCAAAAGAAAATGGAGAAGCT 57.458 34.783 0.00 0.00 0.00 3.74
808 2949 6.258507 TCAAAAGCAAAAGAAAATGGAGAAGC 59.741 34.615 0.00 0.00 0.00 3.86
809 2950 7.775397 TCAAAAGCAAAAGAAAATGGAGAAG 57.225 32.000 0.00 0.00 0.00 2.85
810 2951 9.260002 GTATCAAAAGCAAAAGAAAATGGAGAA 57.740 29.630 0.00 0.00 0.00 2.87
811 2952 8.420222 TGTATCAAAAGCAAAAGAAAATGGAGA 58.580 29.630 0.00 0.00 0.00 3.71
812 2953 8.490355 GTGTATCAAAAGCAAAAGAAAATGGAG 58.510 33.333 0.00 0.00 0.00 3.86
814 2955 8.063630 GTGTGTATCAAAAGCAAAAGAAAATGG 58.936 33.333 0.00 0.00 0.00 3.16
815 2956 8.602328 TGTGTGTATCAAAAGCAAAAGAAAATG 58.398 29.630 0.00 0.00 0.00 2.32
816 2957 8.715191 TGTGTGTATCAAAAGCAAAAGAAAAT 57.285 26.923 0.00 0.00 0.00 1.82
825 2966 7.686438 AGAATGTATGTGTGTATCAAAAGCA 57.314 32.000 0.00 0.00 0.00 3.91
847 2988 2.172930 ACAGGCGGAGAGATGTACTAGA 59.827 50.000 0.00 0.00 0.00 2.43
849 2990 2.730934 ACAGGCGGAGAGATGTACTA 57.269 50.000 0.00 0.00 0.00 1.82
850 2991 1.853963 AACAGGCGGAGAGATGTACT 58.146 50.000 0.00 0.00 0.00 2.73
851 2992 2.674796 AAACAGGCGGAGAGATGTAC 57.325 50.000 0.00 0.00 0.00 2.90
887 3029 6.009589 TGAACTAGGAATGCAAAGGAAATCA 58.990 36.000 0.00 0.00 0.00 2.57
904 3046 6.086502 CGAGTAAACGTTGAGAACTGAACTAG 59.913 42.308 0.00 0.00 0.00 2.57
905 3047 5.911280 CGAGTAAACGTTGAGAACTGAACTA 59.089 40.000 0.00 0.00 0.00 2.24
906 3048 4.738740 CGAGTAAACGTTGAGAACTGAACT 59.261 41.667 0.00 0.00 0.00 3.01
907 3049 4.085210 CCGAGTAAACGTTGAGAACTGAAC 60.085 45.833 0.00 0.00 0.00 3.18
913 3062 7.092079 TGATTATTCCGAGTAAACGTTGAGAA 58.908 34.615 0.00 0.00 0.00 2.87
930 3079 3.056304 GAGCAGAGTCGGCTGATTATTC 58.944 50.000 22.95 2.62 42.78 1.75
983 3132 2.231478 TCCATCTGTGAGTCGGTCTTTC 59.769 50.000 0.00 0.00 0.00 2.62
990 3139 1.403382 CCACACTCCATCTGTGAGTCG 60.403 57.143 0.05 0.00 41.02 4.18
1166 3321 2.753446 GCTTCCTGGGGCTCTTGC 60.753 66.667 0.00 0.00 38.76 4.01
1266 3421 4.396854 GGCGACACCGAGTACATC 57.603 61.111 0.00 0.00 38.22 3.06
1452 3607 0.749454 GCCTTGCCATCCCACAGTAG 60.749 60.000 0.00 0.00 0.00 2.57
1454 3609 2.036256 GCCTTGCCATCCCACAGT 59.964 61.111 0.00 0.00 0.00 3.55
1455 3610 3.136123 CGCCTTGCCATCCCACAG 61.136 66.667 0.00 0.00 0.00 3.66
1456 3611 3.626996 CTCGCCTTGCCATCCCACA 62.627 63.158 0.00 0.00 0.00 4.17
1457 3612 2.825836 CTCGCCTTGCCATCCCAC 60.826 66.667 0.00 0.00 0.00 4.61
1458 3613 4.113815 CCTCGCCTTGCCATCCCA 62.114 66.667 0.00 0.00 0.00 4.37
1459 3614 4.883354 CCCTCGCCTTGCCATCCC 62.883 72.222 0.00 0.00 0.00 3.85
1540 3709 1.522580 GCAGCCTCGTCAGGATTCC 60.523 63.158 0.00 0.00 43.65 3.01
1562 3732 2.151202 ACATTGTTGTTACAGCTCGGG 58.849 47.619 0.34 0.00 35.28 5.14
1594 3764 8.738645 AGGAAATCATCATTAGAAGTGGTAAC 57.261 34.615 0.00 0.00 0.00 2.50
1610 3783 7.661040 CACACAAGGAACTAAAAGGAAATCAT 58.339 34.615 0.00 0.00 38.49 2.45
1618 3791 5.036737 CACAAGCACACAAGGAACTAAAAG 58.963 41.667 0.00 0.00 38.49 2.27
1622 3795 3.275617 ACACAAGCACACAAGGAACTA 57.724 42.857 0.00 0.00 38.49 2.24
1635 3808 2.561569 ACAGAGGTACACAACACAAGC 58.438 47.619 0.00 0.00 0.00 4.01
1636 3809 4.208460 CGTAACAGAGGTACACAACACAAG 59.792 45.833 0.00 0.00 0.00 3.16
1648 3823 4.673441 CGAATGAAGATCGTAACAGAGGT 58.327 43.478 0.00 0.00 35.64 3.85
1709 3884 0.030638 ATTCCTGCGTTGCAACACAC 59.969 50.000 28.01 17.11 38.41 3.82
1725 3900 7.222224 AGTTCATACGAAATCTGGACGTAATTC 59.778 37.037 0.00 0.00 43.65 2.17
1765 3943 2.716244 CGGATCCCGTGAGTCGAG 59.284 66.667 6.06 0.00 42.73 4.04
1770 3986 0.538118 TTTTACCCGGATCCCGTGAG 59.462 55.000 0.73 0.00 46.80 3.51
1775 3991 1.741394 CGTCAGTTTTACCCGGATCCC 60.741 57.143 0.73 0.00 0.00 3.85
1868 4084 2.087857 ATCTCCCCCACCCGCAAAAA 62.088 55.000 0.00 0.00 0.00 1.94
1869 4085 2.087857 AATCTCCCCCACCCGCAAAA 62.088 55.000 0.00 0.00 0.00 2.44
1870 4086 2.493273 GAATCTCCCCCACCCGCAAA 62.493 60.000 0.00 0.00 0.00 3.68
1871 4087 2.938798 AATCTCCCCCACCCGCAA 60.939 61.111 0.00 0.00 0.00 4.85
1872 4088 3.407967 GAATCTCCCCCACCCGCA 61.408 66.667 0.00 0.00 0.00 5.69
1873 4089 4.191015 GGAATCTCCCCCACCCGC 62.191 72.222 0.00 0.00 0.00 6.13
1874 4090 1.571773 AAAGGAATCTCCCCCACCCG 61.572 60.000 0.00 0.00 37.19 5.28
1875 4091 0.259065 GAAAGGAATCTCCCCCACCC 59.741 60.000 0.00 0.00 37.19 4.61
1876 4092 0.259065 GGAAAGGAATCTCCCCCACC 59.741 60.000 0.00 0.00 37.19 4.61
1877 4093 0.259065 GGGAAAGGAATCTCCCCCAC 59.741 60.000 0.00 0.00 45.03 4.61
1878 4094 2.723305 GGGAAAGGAATCTCCCCCA 58.277 57.895 0.00 0.00 45.03 4.96
1882 4098 4.395231 CGTAAACAAGGGAAAGGAATCTCC 59.605 45.833 0.00 0.00 36.58 3.71
1883 4099 4.395231 CCGTAAACAAGGGAAAGGAATCTC 59.605 45.833 0.00 0.00 34.90 2.75
1884 4100 4.332828 CCGTAAACAAGGGAAAGGAATCT 58.667 43.478 0.00 0.00 34.90 2.40
1885 4101 3.119602 GCCGTAAACAAGGGAAAGGAATC 60.120 47.826 0.00 0.00 34.90 2.52
1886 4102 2.823747 GCCGTAAACAAGGGAAAGGAAT 59.176 45.455 0.00 0.00 34.90 3.01
1887 4103 2.232399 GCCGTAAACAAGGGAAAGGAA 58.768 47.619 0.00 0.00 34.90 3.36
1888 4104 1.143277 TGCCGTAAACAAGGGAAAGGA 59.857 47.619 0.00 0.00 34.90 3.36
1889 4105 1.268625 GTGCCGTAAACAAGGGAAAGG 59.731 52.381 0.00 0.00 34.90 3.11
1890 4106 1.950909 TGTGCCGTAAACAAGGGAAAG 59.049 47.619 0.00 0.00 34.90 2.62
1923 4139 0.027194 CAGCGCCATTGTTCGATCTG 59.973 55.000 2.29 0.00 0.00 2.90
1929 4145 1.443194 CAGTGCAGCGCCATTGTTC 60.443 57.895 2.29 0.00 0.00 3.18
1941 4157 2.939133 TTCGGAGTTGCTGCAGTGCA 62.939 55.000 18.58 18.58 41.65 4.57
1944 4160 0.322975 AGATTCGGAGTTGCTGCAGT 59.677 50.000 16.64 0.00 0.00 4.40
1987 4203 3.437049 GCGTATCTTTGAGGGCATATTCC 59.563 47.826 0.00 0.00 0.00 3.01
2018 4234 5.001232 TCTAAACAAGTGTTAGATGGTGGC 58.999 41.667 0.00 0.00 37.25 5.01
2019 4235 6.464222 TCTCTAAACAAGTGTTAGATGGTGG 58.536 40.000 0.00 0.00 37.25 4.61
2020 4236 7.962964 TTCTCTAAACAAGTGTTAGATGGTG 57.037 36.000 0.00 0.00 37.25 4.17
2021 4237 8.211629 AGTTTCTCTAAACAAGTGTTAGATGGT 58.788 33.333 0.00 0.00 46.18 3.55
2042 4258 2.991866 GTGTACGGGACAGCTTAGTTTC 59.008 50.000 0.00 0.00 39.29 2.78
2060 4276 3.513680 TTTGTGACTCGTGTACTGTGT 57.486 42.857 0.00 0.00 0.00 3.72
2061 4277 3.615056 TGTTTTGTGACTCGTGTACTGTG 59.385 43.478 0.00 0.00 0.00 3.66
2086 4302 5.006941 GCAATAATAAACCTGCAAAGCCATG 59.993 40.000 0.00 0.00 34.87 3.66
2102 4318 8.784994 TGTTTTCGTTTTACCTGAGCAATAATA 58.215 29.630 0.00 0.00 0.00 0.98
2103 4319 7.653647 TGTTTTCGTTTTACCTGAGCAATAAT 58.346 30.769 0.00 0.00 0.00 1.28
2104 4320 7.028926 TGTTTTCGTTTTACCTGAGCAATAA 57.971 32.000 0.00 0.00 0.00 1.40
2159 4375 0.449388 CTTCATTGTCTCCCTTGCGC 59.551 55.000 0.00 0.00 0.00 6.09
2190 4406 0.458716 CTTCCTTCGCCTCTCGTTCC 60.459 60.000 0.00 0.00 39.67 3.62
2191 4407 1.079317 GCTTCCTTCGCCTCTCGTTC 61.079 60.000 0.00 0.00 39.67 3.95
2192 4408 1.079750 GCTTCCTTCGCCTCTCGTT 60.080 57.895 0.00 0.00 39.67 3.85
2193 4409 2.574399 GCTTCCTTCGCCTCTCGT 59.426 61.111 0.00 0.00 39.67 4.18
2194 4410 2.580867 CGCTTCCTTCGCCTCTCG 60.581 66.667 0.00 0.00 40.15 4.04
2195 4411 1.226831 CTCGCTTCCTTCGCCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
2196 4412 2.716017 CCTCGCTTCCTTCGCCTCT 61.716 63.158 0.00 0.00 0.00 3.69
2197 4413 2.202810 CCTCGCTTCCTTCGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
2198 4414 3.775654 CCCTCGCTTCCTTCGCCT 61.776 66.667 0.00 0.00 0.00 5.52
2199 4415 2.798148 TTTCCCTCGCTTCCTTCGCC 62.798 60.000 0.00 0.00 0.00 5.54
2200 4416 0.953960 TTTTCCCTCGCTTCCTTCGC 60.954 55.000 0.00 0.00 0.00 4.70
2201 4417 1.464997 CTTTTTCCCTCGCTTCCTTCG 59.535 52.381 0.00 0.00 0.00 3.79
2202 4418 1.813178 CCTTTTTCCCTCGCTTCCTTC 59.187 52.381 0.00 0.00 0.00 3.46
2203 4419 1.911057 CCTTTTTCCCTCGCTTCCTT 58.089 50.000 0.00 0.00 0.00 3.36
2204 4420 0.609406 GCCTTTTTCCCTCGCTTCCT 60.609 55.000 0.00 0.00 0.00 3.36
2205 4421 1.883732 GCCTTTTTCCCTCGCTTCC 59.116 57.895 0.00 0.00 0.00 3.46
2206 4422 1.502190 CGCCTTTTTCCCTCGCTTC 59.498 57.895 0.00 0.00 0.00 3.86
2207 4423 2.626780 GCGCCTTTTTCCCTCGCTT 61.627 57.895 0.00 0.00 42.19 4.68
2208 4424 3.056328 GCGCCTTTTTCCCTCGCT 61.056 61.111 0.00 0.00 42.19 4.93
2209 4425 4.460873 CGCGCCTTTTTCCCTCGC 62.461 66.667 0.00 0.00 42.05 5.03
2210 4426 2.740714 CTCGCGCCTTTTTCCCTCG 61.741 63.158 0.00 0.00 0.00 4.63
2211 4427 1.362406 CTCTCGCGCCTTTTTCCCTC 61.362 60.000 0.00 0.00 0.00 4.30
2212 4428 1.376037 CTCTCGCGCCTTTTTCCCT 60.376 57.895 0.00 0.00 0.00 4.20
2213 4429 2.399356 CCTCTCGCGCCTTTTTCCC 61.399 63.158 0.00 0.00 0.00 3.97
2214 4430 3.040414 GCCTCTCGCGCCTTTTTCC 62.040 63.158 0.00 0.00 0.00 3.13
2215 4431 2.481009 GCCTCTCGCGCCTTTTTC 59.519 61.111 0.00 0.00 0.00 2.29
2216 4432 3.056328 GGCCTCTCGCGCCTTTTT 61.056 61.111 0.00 0.00 43.48 1.94
2222 4438 4.742201 TTCTGTGGCCTCTCGCGC 62.742 66.667 3.32 0.00 38.94 6.86
2223 4439 2.048222 TTTCTGTGGCCTCTCGCG 60.048 61.111 3.32 0.00 38.94 5.87
2224 4440 2.383527 CGTTTCTGTGGCCTCTCGC 61.384 63.158 3.32 0.00 0.00 5.03
2225 4441 1.738099 CCGTTTCTGTGGCCTCTCG 60.738 63.158 3.32 2.52 0.00 4.04
2226 4442 2.035442 GCCGTTTCTGTGGCCTCTC 61.035 63.158 3.32 0.00 45.73 3.20
2227 4443 2.032681 GCCGTTTCTGTGGCCTCT 59.967 61.111 3.32 0.00 45.73 3.69
2232 4448 2.343163 TTTTGGCGCCGTTTCTGTGG 62.343 55.000 23.90 0.00 0.00 4.17
2233 4449 0.318614 ATTTTGGCGCCGTTTCTGTG 60.319 50.000 23.90 0.00 0.00 3.66
2234 4450 0.387565 AATTTTGGCGCCGTTTCTGT 59.612 45.000 23.90 0.00 0.00 3.41
2235 4451 0.783579 CAATTTTGGCGCCGTTTCTG 59.216 50.000 23.90 12.55 0.00 3.02
2236 4452 0.671251 TCAATTTTGGCGCCGTTTCT 59.329 45.000 23.90 2.67 0.00 2.52
2237 4453 1.389784 CATCAATTTTGGCGCCGTTTC 59.610 47.619 23.90 0.00 0.00 2.78
2238 4454 1.427435 CATCAATTTTGGCGCCGTTT 58.573 45.000 23.90 9.58 0.00 3.60
2239 4455 0.389687 CCATCAATTTTGGCGCCGTT 60.390 50.000 23.90 11.16 0.00 4.44
2240 4456 1.215117 CCATCAATTTTGGCGCCGT 59.785 52.632 23.90 4.59 0.00 5.68
2241 4457 1.519013 CCCATCAATTTTGGCGCCG 60.519 57.895 23.90 6.13 32.60 6.46
2242 4458 0.248843 TTCCCATCAATTTTGGCGCC 59.751 50.000 22.73 22.73 32.60 6.53
2243 4459 1.643880 CTTCCCATCAATTTTGGCGC 58.356 50.000 0.00 0.00 32.60 6.53
2244 4460 1.824230 TCCTTCCCATCAATTTTGGCG 59.176 47.619 0.00 0.00 32.60 5.69
2245 4461 2.169144 CCTCCTTCCCATCAATTTTGGC 59.831 50.000 0.00 0.00 32.60 4.52
2246 4462 3.444029 ACCTCCTTCCCATCAATTTTGG 58.556 45.455 0.00 0.00 0.00 3.28
2247 4463 3.448660 GGACCTCCTTCCCATCAATTTTG 59.551 47.826 0.00 0.00 0.00 2.44
2248 4464 3.713003 GGACCTCCTTCCCATCAATTTT 58.287 45.455 0.00 0.00 0.00 1.82
2249 4465 3.388552 GGACCTCCTTCCCATCAATTT 57.611 47.619 0.00 0.00 0.00 1.82
2274 4490 3.753434 AGTCGTCCCTGCTGAGCG 61.753 66.667 0.00 0.00 0.00 5.03
2275 4491 2.125753 CAGTCGTCCCTGCTGAGC 60.126 66.667 0.00 0.00 32.39 4.26
2293 4509 1.134965 CACAAAGGACTAGGAGCGGAG 60.135 57.143 0.00 0.00 0.00 4.63
2294 4510 0.895530 CACAAAGGACTAGGAGCGGA 59.104 55.000 0.00 0.00 0.00 5.54
2295 4511 0.895530 TCACAAAGGACTAGGAGCGG 59.104 55.000 0.00 0.00 0.00 5.52
2296 4512 2.544685 CATCACAAAGGACTAGGAGCG 58.455 52.381 0.00 0.00 0.00 5.03
2297 4513 2.501723 TCCATCACAAAGGACTAGGAGC 59.498 50.000 0.00 0.00 0.00 4.70
2298 4514 4.467795 TCTTCCATCACAAAGGACTAGGAG 59.532 45.833 0.00 0.00 32.62 3.69
2299 4515 4.425772 TCTTCCATCACAAAGGACTAGGA 58.574 43.478 0.00 0.00 32.62 2.94
2300 4516 4.826274 TCTTCCATCACAAAGGACTAGG 57.174 45.455 0.00 0.00 32.62 3.02
2301 4517 5.799213 ACTTCTTCCATCACAAAGGACTAG 58.201 41.667 0.00 0.00 32.62 2.57
2302 4518 5.825593 ACTTCTTCCATCACAAAGGACTA 57.174 39.130 0.00 0.00 32.62 2.59
2303 4519 4.713792 ACTTCTTCCATCACAAAGGACT 57.286 40.909 0.00 0.00 32.62 3.85
2304 4520 4.393371 GCTACTTCTTCCATCACAAAGGAC 59.607 45.833 0.00 0.00 32.62 3.85
2305 4521 4.565652 GGCTACTTCTTCCATCACAAAGGA 60.566 45.833 0.00 0.00 0.00 3.36
2306 4522 3.691609 GGCTACTTCTTCCATCACAAAGG 59.308 47.826 0.00 0.00 0.00 3.11
2307 4523 4.394300 CAGGCTACTTCTTCCATCACAAAG 59.606 45.833 0.00 0.00 0.00 2.77
2308 4524 4.326826 CAGGCTACTTCTTCCATCACAAA 58.673 43.478 0.00 0.00 0.00 2.83
2309 4525 3.869912 GCAGGCTACTTCTTCCATCACAA 60.870 47.826 0.00 0.00 0.00 3.33
2310 4526 2.355108 GCAGGCTACTTCTTCCATCACA 60.355 50.000 0.00 0.00 0.00 3.58
2311 4527 2.284190 GCAGGCTACTTCTTCCATCAC 58.716 52.381 0.00 0.00 0.00 3.06
2312 4528 1.134699 CGCAGGCTACTTCTTCCATCA 60.135 52.381 0.00 0.00 0.00 3.07
2313 4529 1.134670 ACGCAGGCTACTTCTTCCATC 60.135 52.381 0.00 0.00 0.00 3.51
2314 4530 0.905357 ACGCAGGCTACTTCTTCCAT 59.095 50.000 0.00 0.00 0.00 3.41
2315 4531 0.037326 CACGCAGGCTACTTCTTCCA 60.037 55.000 0.00 0.00 0.00 3.53
2316 4532 0.246635 TCACGCAGGCTACTTCTTCC 59.753 55.000 0.00 0.00 0.00 3.46
2317 4533 2.080286 TTCACGCAGGCTACTTCTTC 57.920 50.000 0.00 0.00 0.00 2.87
2318 4534 2.770164 ATTCACGCAGGCTACTTCTT 57.230 45.000 0.00 0.00 0.00 2.52
2319 4535 3.887621 TTATTCACGCAGGCTACTTCT 57.112 42.857 0.00 0.00 0.00 2.85
2320 4536 4.153475 TGTTTTATTCACGCAGGCTACTTC 59.847 41.667 0.00 0.00 0.00 3.01
2321 4537 4.069304 TGTTTTATTCACGCAGGCTACTT 58.931 39.130 0.00 0.00 0.00 2.24
2322 4538 3.435671 GTGTTTTATTCACGCAGGCTACT 59.564 43.478 0.00 0.00 0.00 2.57
2323 4539 3.435671 AGTGTTTTATTCACGCAGGCTAC 59.564 43.478 0.00 0.00 40.28 3.58
2324 4540 3.435327 CAGTGTTTTATTCACGCAGGCTA 59.565 43.478 0.00 0.00 40.28 3.93
2325 4541 2.226437 CAGTGTTTTATTCACGCAGGCT 59.774 45.455 0.00 0.00 40.28 4.58
2326 4542 2.584791 CAGTGTTTTATTCACGCAGGC 58.415 47.619 0.00 0.00 40.28 4.85
2327 4543 2.811431 TCCAGTGTTTTATTCACGCAGG 59.189 45.455 0.00 0.00 40.28 4.85
2328 4544 4.481930 TTCCAGTGTTTTATTCACGCAG 57.518 40.909 0.00 0.00 40.28 5.18
2329 4545 5.009110 TCAATTCCAGTGTTTTATTCACGCA 59.991 36.000 0.00 0.00 40.28 5.24
2330 4546 5.457140 TCAATTCCAGTGTTTTATTCACGC 58.543 37.500 0.00 0.00 40.28 5.34
2331 4547 9.619316 TTAATCAATTCCAGTGTTTTATTCACG 57.381 29.630 0.00 0.00 40.28 4.35
2340 4556 9.758651 GGTAAAAGTTTAATCAATTCCAGTGTT 57.241 29.630 0.00 0.00 0.00 3.32
2341 4557 8.919145 TGGTAAAAGTTTAATCAATTCCAGTGT 58.081 29.630 0.00 0.00 0.00 3.55
2342 4558 9.927668 ATGGTAAAAGTTTAATCAATTCCAGTG 57.072 29.630 0.00 0.00 0.00 3.66
2350 4566 9.638239 GCAATCTGATGGTAAAAGTTTAATCAA 57.362 29.630 0.00 0.00 0.00 2.57
2351 4567 9.023962 AGCAATCTGATGGTAAAAGTTTAATCA 57.976 29.630 0.00 0.00 0.00 2.57
2352 4568 9.860898 AAGCAATCTGATGGTAAAAGTTTAATC 57.139 29.630 0.00 0.00 0.00 1.75
2356 4572 9.077885 TCTAAAGCAATCTGATGGTAAAAGTTT 57.922 29.630 0.00 0.00 0.00 2.66
2357 4573 8.635765 TCTAAAGCAATCTGATGGTAAAAGTT 57.364 30.769 0.00 0.00 0.00 2.66
2358 4574 8.515414 GTTCTAAAGCAATCTGATGGTAAAAGT 58.485 33.333 0.00 0.00 0.00 2.66
2359 4575 8.734386 AGTTCTAAAGCAATCTGATGGTAAAAG 58.266 33.333 0.00 0.00 0.00 2.27
2360 4576 8.635765 AGTTCTAAAGCAATCTGATGGTAAAA 57.364 30.769 0.00 0.00 0.00 1.52
2361 4577 8.514594 CAAGTTCTAAAGCAATCTGATGGTAAA 58.485 33.333 0.00 0.00 0.00 2.01
2362 4578 7.882791 TCAAGTTCTAAAGCAATCTGATGGTAA 59.117 33.333 0.00 0.00 0.00 2.85
2363 4579 7.394016 TCAAGTTCTAAAGCAATCTGATGGTA 58.606 34.615 0.00 0.00 0.00 3.25
2364 4580 6.240894 TCAAGTTCTAAAGCAATCTGATGGT 58.759 36.000 0.00 0.00 0.00 3.55
2365 4581 6.748333 TCAAGTTCTAAAGCAATCTGATGG 57.252 37.500 0.00 0.00 0.00 3.51
2366 4582 7.982224 TGATCAAGTTCTAAAGCAATCTGATG 58.018 34.615 0.00 0.00 0.00 3.07
2367 4583 8.571461 TTGATCAAGTTCTAAAGCAATCTGAT 57.429 30.769 3.38 0.00 0.00 2.90
2368 4584 7.984422 TTGATCAAGTTCTAAAGCAATCTGA 57.016 32.000 3.38 0.00 0.00 3.27
2369 4585 9.635520 AATTTGATCAAGTTCTAAAGCAATCTG 57.364 29.630 10.17 0.00 0.00 2.90
2372 4588 9.428097 GGAAATTTGATCAAGTTCTAAAGCAAT 57.572 29.630 22.94 6.29 0.00 3.56
2373 4589 7.872483 GGGAAATTTGATCAAGTTCTAAAGCAA 59.128 33.333 22.94 3.14 0.00 3.91
2374 4590 7.233348 AGGGAAATTTGATCAAGTTCTAAAGCA 59.767 33.333 22.94 3.57 0.00 3.91
2375 4591 7.606349 AGGGAAATTTGATCAAGTTCTAAAGC 58.394 34.615 22.94 12.44 0.00 3.51
2376 4592 9.987272 AAAGGGAAATTTGATCAAGTTCTAAAG 57.013 29.630 22.94 0.00 0.00 1.85
2402 4618 5.639506 CAGGCTACTTCTTCGATGAGAAAAA 59.360 40.000 0.94 0.00 38.57 1.94
2403 4619 5.171476 CAGGCTACTTCTTCGATGAGAAAA 58.829 41.667 0.94 0.00 38.57 2.29
2404 4620 4.748892 CAGGCTACTTCTTCGATGAGAAA 58.251 43.478 0.94 0.00 38.57 2.52
2405 4621 3.429547 GCAGGCTACTTCTTCGATGAGAA 60.430 47.826 0.94 0.40 37.31 2.87
2406 4622 2.099921 GCAGGCTACTTCTTCGATGAGA 59.900 50.000 0.94 0.00 0.00 3.27
2407 4623 2.100584 AGCAGGCTACTTCTTCGATGAG 59.899 50.000 0.94 0.00 0.00 2.90
2408 4624 2.103373 AGCAGGCTACTTCTTCGATGA 58.897 47.619 0.00 0.00 0.00 2.92
2409 4625 2.159184 TCAGCAGGCTACTTCTTCGATG 60.159 50.000 0.00 0.00 0.00 3.84
2410 4626 2.103373 TCAGCAGGCTACTTCTTCGAT 58.897 47.619 0.00 0.00 0.00 3.59
2411 4627 1.545841 TCAGCAGGCTACTTCTTCGA 58.454 50.000 0.00 0.00 0.00 3.71
2412 4628 1.996191 GTTCAGCAGGCTACTTCTTCG 59.004 52.381 0.00 0.00 0.00 3.79
2413 4629 3.258228 GAGTTCAGCAGGCTACTTCTTC 58.742 50.000 0.00 0.00 0.00 2.87
2414 4630 2.353208 CGAGTTCAGCAGGCTACTTCTT 60.353 50.000 0.00 0.00 0.00 2.52
2415 4631 1.203523 CGAGTTCAGCAGGCTACTTCT 59.796 52.381 0.00 0.00 0.00 2.85
2416 4632 1.634702 CGAGTTCAGCAGGCTACTTC 58.365 55.000 0.00 0.00 0.00 3.01
2417 4633 0.247736 CCGAGTTCAGCAGGCTACTT 59.752 55.000 0.00 0.00 0.00 2.24
2418 4634 0.612174 TCCGAGTTCAGCAGGCTACT 60.612 55.000 0.00 0.00 0.00 2.57
2419 4635 0.461961 ATCCGAGTTCAGCAGGCTAC 59.538 55.000 0.00 0.00 0.00 3.58
2420 4636 0.747255 GATCCGAGTTCAGCAGGCTA 59.253 55.000 0.00 0.00 0.00 3.93
2421 4637 1.260538 TGATCCGAGTTCAGCAGGCT 61.261 55.000 0.00 0.00 0.00 4.58
2422 4638 1.219124 TGATCCGAGTTCAGCAGGC 59.781 57.895 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.