Multiple sequence alignment - TraesCS5A01G330500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G330500 chr5A 100.000 4736 0 0 1 4736 540050920 540055655 0.000000e+00 8746
1 TraesCS5A01G330500 chr5B 91.000 4011 250 65 541 4537 515183605 515187518 0.000000e+00 5304
2 TraesCS5A01G330500 chr5B 87.850 107 12 1 427 533 58402157 58402262 1.790000e-24 124
3 TraesCS5A01G330500 chr5B 74.929 351 25 22 3 318 515183097 515183419 8.380000e-18 102
4 TraesCS5A01G330500 chr5D 92.531 3240 194 22 865 4089 425838740 425841946 0.000000e+00 4599
5 TraesCS5A01G330500 chr5D 81.569 255 27 6 2 236 425837965 425838219 4.840000e-45 193
6 TraesCS5A01G330500 chr5D 88.489 139 15 1 4599 4736 425842104 425842242 2.930000e-37 167
7 TraesCS5A01G330500 chr5D 90.476 105 6 4 435 538 443776523 443776624 8.270000e-28 135
8 TraesCS5A01G330500 chr3A 85.776 1385 166 15 976 2346 44639408 44640775 0.000000e+00 1437
9 TraesCS5A01G330500 chr3A 87.284 1274 139 13 1081 2342 44709839 44711101 0.000000e+00 1434
10 TraesCS5A01G330500 chr3A 81.594 891 150 11 2627 3507 186041144 186040258 0.000000e+00 725
11 TraesCS5A01G330500 chr3B 85.560 1385 169 15 976 2346 54794206 54795573 0.000000e+00 1421
12 TraesCS5A01G330500 chr3B 84.137 1286 182 8 1011 2288 54784766 54786037 0.000000e+00 1225
13 TraesCS5A01G330500 chr3B 81.594 891 150 12 2627 3507 236496455 236495569 0.000000e+00 725
14 TraesCS5A01G330500 chr3D 84.547 1346 181 16 1010 2346 32278841 32280168 0.000000e+00 1308
15 TraesCS5A01G330500 chr3D 84.929 1274 163 17 1081 2335 32299601 32300864 0.000000e+00 1262
16 TraesCS5A01G330500 chr3D 81.348 890 154 9 2627 3507 159786791 159785905 0.000000e+00 713
17 TraesCS5A01G330500 chr4D 81.804 1286 194 28 1081 2343 1995346 1996614 0.000000e+00 1042
18 TraesCS5A01G330500 chr4D 84.625 813 120 4 2699 3507 630189 631000 0.000000e+00 804
19 TraesCS5A01G330500 chr4B 84.587 811 118 6 2702 3507 1244531 1243723 0.000000e+00 798
20 TraesCS5A01G330500 chr4B 76.513 826 174 20 2691 3506 431796096 431795281 2.620000e-117 433
21 TraesCS5A01G330500 chr4B 74.100 861 154 49 2699 3513 654130717 654131554 1.670000e-74 291
22 TraesCS5A01G330500 chr4A 84.049 815 124 4 2699 3507 900719 901533 0.000000e+00 780
23 TraesCS5A01G330500 chr4A 77.119 826 169 20 2691 3506 115788312 115789127 1.200000e-125 460
24 TraesCS5A01G330500 chr4A 88.889 108 11 1 432 539 743679875 743679769 1.070000e-26 132
25 TraesCS5A01G330500 chr1D 75.775 1032 229 18 2699 3718 316858364 316859386 7.080000e-138 501
26 TraesCS5A01G330500 chr7D 78.149 778 152 15 2743 3508 25523007 25522236 3.320000e-131 479
27 TraesCS5A01G330500 chr1B 74.855 1034 232 22 2699 3718 429003821 429004840 1.210000e-120 444
28 TraesCS5A01G330500 chr2B 90.909 99 8 1 434 532 361570485 361570388 1.070000e-26 132
29 TraesCS5A01G330500 chr2B 89.423 104 10 1 430 533 730560857 730560959 3.850000e-26 130
30 TraesCS5A01G330500 chr2B 90.000 100 9 1 433 532 183513479 183513577 1.380000e-25 128
31 TraesCS5A01G330500 chr2B 90.000 100 7 3 435 533 757882325 757882422 4.980000e-25 126
32 TraesCS5A01G330500 chr2A 90.909 99 8 1 434 532 256215712 256215809 1.070000e-26 132
33 TraesCS5A01G330500 chr2D 88.571 105 11 1 435 539 218385389 218385492 4.980000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G330500 chr5A 540050920 540055655 4735 False 8746 8746 100.000000 1 4736 1 chr5A.!!$F1 4735
1 TraesCS5A01G330500 chr5B 515183097 515187518 4421 False 2703 5304 82.964500 3 4537 2 chr5B.!!$F2 4534
2 TraesCS5A01G330500 chr5D 425837965 425842242 4277 False 1653 4599 87.529667 2 4736 3 chr5D.!!$F2 4734
3 TraesCS5A01G330500 chr3A 44639408 44640775 1367 False 1437 1437 85.776000 976 2346 1 chr3A.!!$F1 1370
4 TraesCS5A01G330500 chr3A 44709839 44711101 1262 False 1434 1434 87.284000 1081 2342 1 chr3A.!!$F2 1261
5 TraesCS5A01G330500 chr3A 186040258 186041144 886 True 725 725 81.594000 2627 3507 1 chr3A.!!$R1 880
6 TraesCS5A01G330500 chr3B 54794206 54795573 1367 False 1421 1421 85.560000 976 2346 1 chr3B.!!$F2 1370
7 TraesCS5A01G330500 chr3B 54784766 54786037 1271 False 1225 1225 84.137000 1011 2288 1 chr3B.!!$F1 1277
8 TraesCS5A01G330500 chr3B 236495569 236496455 886 True 725 725 81.594000 2627 3507 1 chr3B.!!$R1 880
9 TraesCS5A01G330500 chr3D 32278841 32280168 1327 False 1308 1308 84.547000 1010 2346 1 chr3D.!!$F1 1336
10 TraesCS5A01G330500 chr3D 32299601 32300864 1263 False 1262 1262 84.929000 1081 2335 1 chr3D.!!$F2 1254
11 TraesCS5A01G330500 chr3D 159785905 159786791 886 True 713 713 81.348000 2627 3507 1 chr3D.!!$R1 880
12 TraesCS5A01G330500 chr4D 1995346 1996614 1268 False 1042 1042 81.804000 1081 2343 1 chr4D.!!$F2 1262
13 TraesCS5A01G330500 chr4D 630189 631000 811 False 804 804 84.625000 2699 3507 1 chr4D.!!$F1 808
14 TraesCS5A01G330500 chr4B 1243723 1244531 808 True 798 798 84.587000 2702 3507 1 chr4B.!!$R1 805
15 TraesCS5A01G330500 chr4B 431795281 431796096 815 True 433 433 76.513000 2691 3506 1 chr4B.!!$R2 815
16 TraesCS5A01G330500 chr4B 654130717 654131554 837 False 291 291 74.100000 2699 3513 1 chr4B.!!$F1 814
17 TraesCS5A01G330500 chr4A 900719 901533 814 False 780 780 84.049000 2699 3507 1 chr4A.!!$F1 808
18 TraesCS5A01G330500 chr4A 115788312 115789127 815 False 460 460 77.119000 2691 3506 1 chr4A.!!$F2 815
19 TraesCS5A01G330500 chr1D 316858364 316859386 1022 False 501 501 75.775000 2699 3718 1 chr1D.!!$F1 1019
20 TraesCS5A01G330500 chr7D 25522236 25523007 771 True 479 479 78.149000 2743 3508 1 chr7D.!!$R1 765
21 TraesCS5A01G330500 chr1B 429003821 429004840 1019 False 444 444 74.855000 2699 3718 1 chr1B.!!$F1 1019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 924 0.033504 ACACGTCGATGTTCTGCCTT 59.966 50.0 7.76 0.0 0.00 4.35 F
826 925 0.439985 CACGTCGATGTTCTGCCTTG 59.560 55.0 7.76 0.0 0.00 3.61 F
2022 2162 0.249398 CGGGGTTCAGTTACCTCCTG 59.751 60.0 0.00 0.0 35.05 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1852 0.250038 CATAGTCTGGACGGCCATGG 60.250 60.000 12.52 7.63 44.91 3.66 R
2193 2333 1.466856 CAATCCACATGTCCACCTGG 58.533 55.000 0.00 0.00 0.00 4.45 R
3978 4166 1.273606 TCAGACTGACCAGCAAGTAGC 59.726 52.381 0.00 0.00 46.19 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 78 1.501582 GTAACCATGCCTCCTCCTCT 58.498 55.000 0.00 0.00 0.00 3.69
94 102 0.452585 CCTCCTCCTCGTTCGTCTTC 59.547 60.000 0.00 0.00 0.00 2.87
113 121 3.712016 TCTTCATTCGGTTGGATTGGA 57.288 42.857 0.00 0.00 0.00 3.53
115 123 3.947196 TCTTCATTCGGTTGGATTGGATG 59.053 43.478 0.00 0.00 0.00 3.51
117 125 3.016031 TCATTCGGTTGGATTGGATGTG 58.984 45.455 0.00 0.00 0.00 3.21
120 128 0.734889 CGGTTGGATTGGATGTGCTC 59.265 55.000 0.00 0.00 0.00 4.26
122 130 2.019984 GGTTGGATTGGATGTGCTCTC 58.980 52.381 0.00 0.00 0.00 3.20
125 133 1.307097 GGATTGGATGTGCTCTCTGC 58.693 55.000 0.00 0.00 43.25 4.26
180 200 2.001872 CAAATTCGGCAAATCAAGGGC 58.998 47.619 0.00 0.00 0.00 5.19
185 205 1.586154 CGGCAAATCAAGGGCTTCGT 61.586 55.000 0.00 0.00 0.00 3.85
186 206 0.603065 GGCAAATCAAGGGCTTCGTT 59.397 50.000 0.00 0.00 0.00 3.85
194 214 4.542075 GGGCTTCGTTCCCTCATC 57.458 61.111 2.85 0.00 40.66 2.92
195 215 1.521681 GGGCTTCGTTCCCTCATCG 60.522 63.158 2.85 0.00 40.66 3.84
215 235 3.061006 TCGTTGTTTACTTCTTTCGTCGC 60.061 43.478 0.00 0.00 0.00 5.19
222 242 0.457853 CTTCTTTCGTCGCCGATCCA 60.458 55.000 0.00 0.00 43.80 3.41
261 293 3.017442 GCCATTTGGGTACTCTTTCCTC 58.983 50.000 0.00 0.00 39.65 3.71
269 301 4.167307 TGGGTACTCTTTCCTCTTTTGGTT 59.833 41.667 0.00 0.00 0.00 3.67
270 302 5.138276 GGGTACTCTTTCCTCTTTTGGTTT 58.862 41.667 0.00 0.00 0.00 3.27
271 303 5.241064 GGGTACTCTTTCCTCTTTTGGTTTC 59.759 44.000 0.00 0.00 0.00 2.78
272 304 5.826208 GGTACTCTTTCCTCTTTTGGTTTCA 59.174 40.000 0.00 0.00 0.00 2.69
301 343 6.798427 AAAAGAGTATATGTGAGCTCCAGA 57.202 37.500 12.15 6.62 0.00 3.86
311 354 1.547820 TGAGCTCCAGACTAGCAACAG 59.452 52.381 12.15 0.00 42.62 3.16
318 361 0.972134 AGACTAGCAACAGCAGCAGA 59.028 50.000 0.00 0.00 0.00 4.26
319 362 1.345741 AGACTAGCAACAGCAGCAGAA 59.654 47.619 0.00 0.00 0.00 3.02
320 363 1.731160 GACTAGCAACAGCAGCAGAAG 59.269 52.381 0.00 0.00 0.00 2.85
352 436 3.127030 CCACCGGTTTCTTTTCTAGATGC 59.873 47.826 2.97 0.00 31.54 3.91
365 449 7.444487 TCTTTTCTAGATGCAGAATCATCCATG 59.556 37.037 0.00 0.00 42.84 3.66
366 450 5.820404 TCTAGATGCAGAATCATCCATGT 57.180 39.130 0.00 0.00 42.84 3.21
368 452 6.598503 TCTAGATGCAGAATCATCCATGTTT 58.401 36.000 0.00 0.00 42.84 2.83
369 453 5.769484 AGATGCAGAATCATCCATGTTTC 57.231 39.130 0.00 3.14 42.84 2.78
370 454 5.198207 AGATGCAGAATCATCCATGTTTCA 58.802 37.500 11.28 0.00 42.84 2.69
371 455 4.976224 TGCAGAATCATCCATGTTTCAG 57.024 40.909 11.28 6.00 38.39 3.02
372 456 3.697542 TGCAGAATCATCCATGTTTCAGG 59.302 43.478 11.28 5.80 38.39 3.86
373 457 3.949754 GCAGAATCATCCATGTTTCAGGA 59.050 43.478 11.28 0.00 38.39 3.86
374 458 4.036498 GCAGAATCATCCATGTTTCAGGAG 59.964 45.833 11.28 2.51 38.39 3.69
394 478 0.463204 TCAGGACTGCTGCTCTATGC 59.537 55.000 0.00 0.00 43.25 3.14
404 488 3.956848 TGCTGCTCTATGCTTCTCTTCTA 59.043 43.478 0.00 0.00 43.37 2.10
405 489 4.403752 TGCTGCTCTATGCTTCTCTTCTAA 59.596 41.667 0.00 0.00 43.37 2.10
408 492 7.151308 GCTGCTCTATGCTTCTCTTCTAATTA 58.849 38.462 0.00 0.00 43.37 1.40
411 495 9.703892 TGCTCTATGCTTCTCTTCTAATTATTC 57.296 33.333 0.00 0.00 43.37 1.75
419 503 7.306866 GCTTCTCTTCTAATTATTCGCGTGATT 60.307 37.037 5.77 0.00 0.00 2.57
420 504 7.624706 TCTCTTCTAATTATTCGCGTGATTC 57.375 36.000 5.77 0.00 0.00 2.52
435 527 5.447144 CGCGTGATTCTTCCATTCACAAATA 60.447 40.000 0.00 0.00 39.75 1.40
437 529 6.403636 GCGTGATTCTTCCATTCACAAATACT 60.404 38.462 0.00 0.00 39.75 2.12
438 530 7.182761 CGTGATTCTTCCATTCACAAATACTC 58.817 38.462 0.00 0.00 39.75 2.59
439 531 7.182761 GTGATTCTTCCATTCACAAATACTCG 58.817 38.462 0.00 0.00 39.59 4.18
440 532 6.878923 TGATTCTTCCATTCACAAATACTCGT 59.121 34.615 0.00 0.00 0.00 4.18
442 534 6.721571 TCTTCCATTCACAAATACTCGTTC 57.278 37.500 0.00 0.00 0.00 3.95
444 536 3.930229 TCCATTCACAAATACTCGTTCCG 59.070 43.478 0.00 0.00 0.00 4.30
445 537 3.682858 CCATTCACAAATACTCGTTCCGT 59.317 43.478 0.00 0.00 0.00 4.69
446 538 4.153475 CCATTCACAAATACTCGTTCCGTT 59.847 41.667 0.00 0.00 0.00 4.44
447 539 5.334569 CCATTCACAAATACTCGTTCCGTTT 60.335 40.000 0.00 0.00 0.00 3.60
448 540 4.977741 TCACAAATACTCGTTCCGTTTC 57.022 40.909 0.00 0.00 0.00 2.78
449 541 4.370049 TCACAAATACTCGTTCCGTTTCA 58.630 39.130 0.00 0.00 0.00 2.69
450 542 4.809958 TCACAAATACTCGTTCCGTTTCAA 59.190 37.500 0.00 0.00 0.00 2.69
452 544 5.966503 CACAAATACTCGTTCCGTTTCAAAA 59.033 36.000 0.00 0.00 0.00 2.44
453 545 6.635239 CACAAATACTCGTTCCGTTTCAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
455 547 8.013378 ACAAATACTCGTTCCGTTTCAAAATAG 58.987 33.333 0.00 0.00 0.00 1.73
456 548 7.894376 AATACTCGTTCCGTTTCAAAATAGA 57.106 32.000 0.00 0.00 0.00 1.98
457 549 8.488651 AATACTCGTTCCGTTTCAAAATAGAT 57.511 30.769 0.00 0.00 0.00 1.98
458 550 6.165659 ACTCGTTCCGTTTCAAAATAGATG 57.834 37.500 0.00 0.00 0.00 2.90
460 552 6.128634 ACTCGTTCCGTTTCAAAATAGATGAC 60.129 38.462 0.00 0.00 0.00 3.06
461 553 5.929992 TCGTTCCGTTTCAAAATAGATGACT 59.070 36.000 0.00 0.00 0.00 3.41
462 554 6.090358 TCGTTCCGTTTCAAAATAGATGACTC 59.910 38.462 0.00 0.00 0.00 3.36
463 555 6.128661 CGTTCCGTTTCAAAATAGATGACTCA 60.129 38.462 0.00 0.00 0.00 3.41
464 556 7.570507 CGTTCCGTTTCAAAATAGATGACTCAA 60.571 37.037 0.00 0.00 0.00 3.02
465 557 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
466 558 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
467 559 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
468 560 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
469 561 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
470 562 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
526 618 7.303634 TGAGTTATCTATTTTGAAACGGAGC 57.696 36.000 0.00 0.00 0.00 4.70
527 619 6.035650 TGAGTTATCTATTTTGAAACGGAGCG 59.964 38.462 0.00 0.00 0.00 5.03
528 620 6.103997 AGTTATCTATTTTGAAACGGAGCGA 58.896 36.000 0.00 0.00 0.00 4.93
529 621 6.255887 AGTTATCTATTTTGAAACGGAGCGAG 59.744 38.462 0.00 0.00 0.00 5.03
530 622 3.921677 TCTATTTTGAAACGGAGCGAGT 58.078 40.909 0.00 0.00 0.00 4.18
531 623 5.063180 TCTATTTTGAAACGGAGCGAGTA 57.937 39.130 0.00 0.00 0.00 2.59
532 624 5.657474 TCTATTTTGAAACGGAGCGAGTAT 58.343 37.500 0.00 0.00 0.00 2.12
533 625 4.600012 ATTTTGAAACGGAGCGAGTATG 57.400 40.909 0.00 0.00 0.00 2.39
534 626 2.736144 TTGAAACGGAGCGAGTATGT 57.264 45.000 0.00 0.00 0.00 2.29
535 627 3.853831 TTGAAACGGAGCGAGTATGTA 57.146 42.857 0.00 0.00 0.00 2.29
536 628 3.141002 TGAAACGGAGCGAGTATGTAC 57.859 47.619 0.00 0.00 0.00 2.90
537 629 2.751259 TGAAACGGAGCGAGTATGTACT 59.249 45.455 0.00 0.00 39.71 2.73
538 630 3.940852 TGAAACGGAGCGAGTATGTACTA 59.059 43.478 0.00 0.00 36.50 1.82
549 641 6.949578 CGAGTATGTACTACTAGCTACCTC 57.050 45.833 0.00 0.00 40.88 3.85
554 646 5.705397 TGTACTACTAGCTACCTCTTCCA 57.295 43.478 0.00 0.00 0.00 3.53
564 656 5.189180 AGCTACCTCTTCCATGATGTTTTC 58.811 41.667 0.00 0.00 0.00 2.29
567 659 5.972107 ACCTCTTCCATGATGTTTTCTTG 57.028 39.130 0.00 0.00 0.00 3.02
574 666 8.567948 TCTTCCATGATGTTTTCTTGTCTTAAC 58.432 33.333 0.00 0.00 0.00 2.01
592 685 9.542462 TGTCTTAACTTTCTATGTATGTATGCC 57.458 33.333 0.00 0.00 0.00 4.40
594 687 7.870954 TCTTAACTTTCTATGTATGTATGCCGG 59.129 37.037 0.00 0.00 0.00 6.13
598 691 2.897326 TCTATGTATGTATGCCGGTGCT 59.103 45.455 1.90 0.00 38.71 4.40
599 692 4.083565 TCTATGTATGTATGCCGGTGCTA 58.916 43.478 1.90 0.00 38.71 3.49
611 706 2.413837 CCGGTGCTATAGTAACATGCC 58.586 52.381 6.69 0.00 0.00 4.40
628 723 1.070445 CCGCTGCATCTCCCCTTAG 59.930 63.158 0.00 0.00 0.00 2.18
645 740 9.716556 CTCCCCTTAGGATAGCTAAATTATCTA 57.283 37.037 0.00 0.00 46.33 1.98
686 783 7.855904 ACTTGCAAAAGAAACTAAGAATACACG 59.144 33.333 0.00 0.00 0.00 4.49
692 789 6.268825 AGAAACTAAGAATACACGAGAGCA 57.731 37.500 0.00 0.00 0.00 4.26
708 805 4.260538 CGAGAGCAGAATTATTGAACAGCC 60.261 45.833 0.00 0.00 0.00 4.85
714 811 6.264067 AGCAGAATTATTGAACAGCCTATTCC 59.736 38.462 0.00 0.00 0.00 3.01
727 824 9.785982 GAACAGCCTATTCCTATTAATCTCTTT 57.214 33.333 0.00 0.00 0.00 2.52
732 829 9.225436 GCCTATTCCTATTAATCTCTTTTCCTG 57.775 37.037 0.00 0.00 0.00 3.86
737 834 8.319057 TCCTATTAATCTCTTTTCCTGCAGTA 57.681 34.615 13.81 0.00 0.00 2.74
741 838 5.707066 AATCTCTTTTCCTGCAGTATCCT 57.293 39.130 13.81 0.00 0.00 3.24
742 839 4.744795 TCTCTTTTCCTGCAGTATCCTC 57.255 45.455 13.81 0.00 0.00 3.71
743 840 3.452627 TCTCTTTTCCTGCAGTATCCTCC 59.547 47.826 13.81 0.00 0.00 4.30
744 841 3.454082 CTCTTTTCCTGCAGTATCCTCCT 59.546 47.826 13.81 0.00 0.00 3.69
745 842 3.846588 TCTTTTCCTGCAGTATCCTCCTT 59.153 43.478 13.81 0.00 0.00 3.36
771 868 1.278238 GGCGATACCACGAACTTCAG 58.722 55.000 0.00 0.00 38.86 3.02
773 870 1.918609 GCGATACCACGAACTTCAGTC 59.081 52.381 0.00 0.00 35.09 3.51
776 873 3.119955 CGATACCACGAACTTCAGTCTGA 60.120 47.826 0.00 0.00 35.09 3.27
792 891 9.371136 CTTCAGTCTGATTGCAATTACTTAGTA 57.629 33.333 14.33 0.00 0.00 1.82
804 903 9.731819 TGCAATTACTTAGTATTCTCTTACTCG 57.268 33.333 0.00 0.00 34.35 4.18
805 904 8.692615 GCAATTACTTAGTATTCTCTTACTCGC 58.307 37.037 0.00 0.00 34.35 5.03
812 911 2.327081 TTCTCTTACTCGCACACGTC 57.673 50.000 0.00 0.00 41.18 4.34
821 920 1.001745 TCGCACACGTCGATGTTCTG 61.002 55.000 7.76 7.64 41.18 3.02
825 924 0.033504 ACACGTCGATGTTCTGCCTT 59.966 50.000 7.76 0.00 0.00 4.35
826 925 0.439985 CACGTCGATGTTCTGCCTTG 59.560 55.000 7.76 0.00 0.00 3.61
835 934 1.469703 TGTTCTGCCTTGCATCGATTG 59.530 47.619 0.00 0.00 38.13 2.67
848 947 3.121778 GCATCGATTGCCTGTTTTTCAAC 59.878 43.478 0.00 0.00 46.15 3.18
849 948 4.297510 CATCGATTGCCTGTTTTTCAACA 58.702 39.130 0.00 0.00 40.82 3.33
850 949 4.377839 TCGATTGCCTGTTTTTCAACAA 57.622 36.364 0.00 0.00 42.53 2.83
851 950 4.358851 TCGATTGCCTGTTTTTCAACAAG 58.641 39.130 0.00 0.00 42.53 3.16
852 951 4.111916 CGATTGCCTGTTTTTCAACAAGT 58.888 39.130 0.00 0.00 42.53 3.16
853 952 4.566360 CGATTGCCTGTTTTTCAACAAGTT 59.434 37.500 0.00 0.00 42.53 2.66
854 953 5.500610 CGATTGCCTGTTTTTCAACAAGTTG 60.501 40.000 6.60 6.60 42.53 3.16
856 955 2.351418 GCCTGTTTTTCAACAAGTTGCC 59.649 45.455 8.04 0.00 42.53 4.52
857 956 3.594134 CCTGTTTTTCAACAAGTTGCCA 58.406 40.909 8.04 0.00 42.53 4.92
858 957 4.190772 CCTGTTTTTCAACAAGTTGCCAT 58.809 39.130 8.04 0.00 42.53 4.40
859 958 4.034279 CCTGTTTTTCAACAAGTTGCCATG 59.966 41.667 8.04 0.13 42.53 3.66
860 959 4.825422 TGTTTTTCAACAAGTTGCCATGA 58.175 34.783 8.04 2.70 40.10 3.07
861 960 5.426504 TGTTTTTCAACAAGTTGCCATGAT 58.573 33.333 8.04 0.00 40.10 2.45
862 961 5.879223 TGTTTTTCAACAAGTTGCCATGATT 59.121 32.000 8.04 0.00 40.10 2.57
863 962 6.036953 TGTTTTTCAACAAGTTGCCATGATTC 59.963 34.615 8.04 0.00 40.10 2.52
894 993 6.002062 CAGTTTACTGAATTGTCAACCTCC 57.998 41.667 3.80 0.00 46.59 4.30
922 1021 1.807142 GCAGGTTCTGTGGCTTTCTAC 59.193 52.381 0.00 0.00 33.43 2.59
924 1023 0.796927 GGTTCTGTGGCTTTCTACGC 59.203 55.000 0.00 0.00 0.00 4.42
945 1044 2.549754 CGTGCCTTCTTCACTGAACAAT 59.450 45.455 0.00 0.00 32.54 2.71
956 1055 7.642669 TCTTCACTGAACAATTGTCTGAAATC 58.357 34.615 12.39 5.15 0.00 2.17
957 1056 6.317789 TCACTGAACAATTGTCTGAAATCC 57.682 37.500 12.39 0.00 0.00 3.01
958 1057 5.827267 TCACTGAACAATTGTCTGAAATCCA 59.173 36.000 12.39 0.19 0.00 3.41
960 1059 7.665145 TCACTGAACAATTGTCTGAAATCCATA 59.335 33.333 12.39 0.00 0.00 2.74
965 1064 3.662759 TTGTCTGAAATCCATACCCCC 57.337 47.619 0.00 0.00 0.00 5.40
998 1101 6.698329 TGAAGAAAATCACAATGTTCTTGCAG 59.302 34.615 8.03 0.00 45.52 4.41
1053 1172 3.701542 GGAGTCCCCAATTCTTTGATTCC 59.298 47.826 0.00 0.00 34.60 3.01
1057 1176 2.166254 CCCCAATTCTTTGATTCCGGTG 59.834 50.000 0.00 0.00 34.60 4.94
1074 1193 4.356442 GCACCAACCGCCGCAAAT 62.356 61.111 0.00 0.00 0.00 2.32
1089 1208 3.252944 CCGCAAATTCCAAAATGGCTTTT 59.747 39.130 0.00 0.00 37.47 2.27
1103 1222 1.315981 GCTTTTCCAGCCCTACCAGC 61.316 60.000 0.00 0.00 43.65 4.85
1143 1262 2.257894 CTGTTAGCTCTCTTGTCGCTG 58.742 52.381 0.00 0.00 35.33 5.18
1170 1295 1.369625 CGGCTGATAACAACTCCACC 58.630 55.000 0.00 0.00 0.00 4.61
1183 1308 3.083349 CCACCGGCCTCATCCTCA 61.083 66.667 0.00 0.00 0.00 3.86
1220 1345 5.914898 TCAGTCCAAGAAGACGATGATAA 57.085 39.130 0.00 0.00 41.83 1.75
1239 1364 0.612732 ATGGTCGTACTTGGGACGGA 60.613 55.000 2.41 0.00 40.70 4.69
1279 1404 2.935238 GCGCCATCACTGAAAGGAGTTA 60.935 50.000 0.00 0.00 39.30 2.24
1320 1445 2.301738 CCCTTCACTCCCCTCCACC 61.302 68.421 0.00 0.00 0.00 4.61
1338 1463 1.426041 CCGTCCCTTTTATGACCGCG 61.426 60.000 0.00 0.00 0.00 6.46
1379 1504 4.810191 ACACCTATTCCTTCTCTGTCAC 57.190 45.455 0.00 0.00 0.00 3.67
1434 1559 3.602483 TCCGGTTGCTTATCCAAACTAC 58.398 45.455 0.00 0.00 30.27 2.73
1441 1566 1.850441 CTTATCCAAACTACGCCGTCG 59.150 52.381 0.00 0.00 42.43 5.12
1511 1636 3.435105 TTTCAATGCTTCGCAAACAGT 57.565 38.095 0.00 0.00 43.62 3.55
1623 1748 2.415168 ACATCACAATGGTTCTTACGCG 59.585 45.455 3.53 3.53 37.19 6.01
1647 1772 2.884012 TGTGAACGGCATTGAGATTGTT 59.116 40.909 0.00 0.00 0.00 2.83
1720 1848 4.186926 CACATCTCCATTCACATTCGACT 58.813 43.478 0.00 0.00 0.00 4.18
1724 1852 2.606725 CTCCATTCACATTCGACTCTGC 59.393 50.000 0.00 0.00 0.00 4.26
2022 2162 0.249398 CGGGGTTCAGTTACCTCCTG 59.751 60.000 0.00 0.00 35.05 3.86
2139 2279 2.583593 GTCATCGTCTGGAGCGGC 60.584 66.667 0.00 0.00 0.00 6.53
2176 2316 8.718102 AACAACATACACAGACTATGTTATCC 57.282 34.615 0.00 0.00 41.05 2.59
2187 2327 2.338577 ATGTTATCCTGACTGCTGGC 57.661 50.000 0.00 0.00 33.46 4.85
2302 2445 4.122776 CAAGCTACAGAATTACGGAGCAT 58.877 43.478 12.19 0.00 32.28 3.79
2452 2595 0.388659 GCTGGTCACATGTTTTGGCA 59.611 50.000 0.00 0.00 0.00 4.92
2483 2626 4.536364 TCTGCAAACGAAAGAACAAGAG 57.464 40.909 0.00 0.00 0.00 2.85
2484 2627 3.038710 CTGCAAACGAAAGAACAAGAGC 58.961 45.455 0.00 0.00 0.00 4.09
3244 3423 1.919956 CTACTCCTTCGGCGTCGTGT 61.920 60.000 10.18 4.75 37.69 4.49
3618 3803 2.809174 TCGATGGACGCAAGCACG 60.809 61.111 0.00 0.00 45.62 5.34
3629 3814 2.050351 AAGCACGACCACGACGAG 60.050 61.111 0.00 0.00 42.66 4.18
3746 3931 1.952263 GCAGGTGAAGTTGGACTGC 59.048 57.895 0.00 0.00 46.24 4.40
3759 3944 4.199804 ACTGCGACAGTCCCTCTT 57.800 55.556 6.67 0.00 41.21 2.85
3800 3985 0.880441 TGGTCCACATTCATGTTGCG 59.120 50.000 0.00 0.00 39.39 4.85
3820 4005 4.160065 TGCGGGTGCTAGTAATTACTGTAA 59.840 41.667 25.27 7.31 43.34 2.41
3873 4061 5.820947 CACACCTTATGGTAATTCAGGTACC 59.179 44.000 2.73 2.73 46.60 3.34
3900 4088 8.228035 AGTCACTTATTAGGACTCAGTGTATC 57.772 38.462 0.00 0.00 37.31 2.24
3902 4090 9.339850 GTCACTTATTAGGACTCAGTGTATCTA 57.660 37.037 0.00 0.00 36.91 1.98
3916 4104 8.990163 TCAGTGTATCTATTCTATGTGTACCA 57.010 34.615 0.00 0.00 0.00 3.25
3926 4114 5.993748 TCTATGTGTACCAGACATCAACA 57.006 39.130 0.89 0.00 41.14 3.33
3978 4166 2.744202 ACTGGAGTTGCGCTTCTTATTG 59.256 45.455 9.73 0.00 0.00 1.90
4000 4188 3.618507 GCTACTTGCTGGTCAGTCTGAAT 60.619 47.826 3.51 0.00 38.95 2.57
4001 4189 3.498774 ACTTGCTGGTCAGTCTGAATT 57.501 42.857 3.51 0.00 0.00 2.17
4021 4209 3.948196 TTTTTGTGAATGCAAGCAAGC 57.052 38.095 0.00 0.00 0.00 4.01
4027 4215 2.026641 TGAATGCAAGCAAGCTATCCC 58.973 47.619 0.00 0.00 34.99 3.85
4030 4218 0.107017 TGCAAGCAAGCTATCCCCTC 60.107 55.000 0.00 0.00 34.99 4.30
4043 4231 1.639722 TCCCCTCTTCATGTCGTTCA 58.360 50.000 0.00 0.00 0.00 3.18
4046 4234 2.496070 CCCCTCTTCATGTCGTTCAGTA 59.504 50.000 0.00 0.00 0.00 2.74
4089 4277 4.378978 CCTCTCTGTGTTCTGAACTACTCG 60.379 50.000 20.18 11.84 0.00 4.18
4103 4324 0.906066 TACTCGCATTGGTAAGGGCA 59.094 50.000 0.00 0.00 0.00 5.36
4117 4338 5.777732 TGGTAAGGGCATGTAACTCAAAATT 59.222 36.000 0.00 0.00 0.00 1.82
4118 4339 6.268847 TGGTAAGGGCATGTAACTCAAAATTT 59.731 34.615 0.00 0.00 0.00 1.82
4154 4375 8.560355 TTTCATTCATACGATTTCCTCTTTCA 57.440 30.769 0.00 0.00 0.00 2.69
4156 4377 9.830975 TTCATTCATACGATTTCCTCTTTCATA 57.169 29.630 0.00 0.00 0.00 2.15
4159 4380 7.658179 TCATACGATTTCCTCTTTCATATGC 57.342 36.000 0.00 0.00 0.00 3.14
4184 4405 7.171678 GCTAGTATATAGAGCTTGTTTGGTTGG 59.828 40.741 8.67 0.00 33.28 3.77
4211 4432 3.719268 TTCTTTCTTATGGGCAGCTGA 57.281 42.857 20.43 0.00 0.00 4.26
4217 4438 2.634940 TCTTATGGGCAGCTGAGTATCC 59.365 50.000 20.43 8.48 0.00 2.59
4218 4439 2.405618 TATGGGCAGCTGAGTATCCT 57.594 50.000 20.43 0.00 0.00 3.24
4219 4440 1.055040 ATGGGCAGCTGAGTATCCTC 58.945 55.000 20.43 0.00 38.27 3.71
4220 4441 1.050988 TGGGCAGCTGAGTATCCTCC 61.051 60.000 20.43 6.00 36.86 4.30
4221 4442 0.762461 GGGCAGCTGAGTATCCTCCT 60.762 60.000 20.43 0.00 36.86 3.69
4222 4443 1.481428 GGGCAGCTGAGTATCCTCCTA 60.481 57.143 20.43 0.00 36.86 2.94
4223 4444 1.616374 GGCAGCTGAGTATCCTCCTAC 59.384 57.143 20.43 0.00 36.86 3.18
4241 4462 9.020731 TCCTCCTACATTTTCAAATAAAACCTC 57.979 33.333 0.00 0.00 0.00 3.85
4247 4468 4.513198 TTTCAAATAAAACCTCTGCCCG 57.487 40.909 0.00 0.00 0.00 6.13
4277 4498 5.972107 AAAAATCCTTGAGGTCATGAGTG 57.028 39.130 0.00 0.00 36.34 3.51
4279 4500 4.916041 AATCCTTGAGGTCATGAGTGAA 57.084 40.909 0.00 0.00 35.80 3.18
4280 4501 5.447778 AATCCTTGAGGTCATGAGTGAAT 57.552 39.130 0.00 0.00 35.80 2.57
4340 4561 2.427506 CACTTTTACAGTGCCTCCTCC 58.572 52.381 0.00 0.00 46.70 4.30
4341 4562 1.002087 ACTTTTACAGTGCCTCCTCCG 59.998 52.381 0.00 0.00 32.83 4.63
4351 4587 0.106318 GCCTCCTCCGTAGTAGGGAA 60.106 60.000 12.51 0.00 32.88 3.97
4352 4588 1.689984 CCTCCTCCGTAGTAGGGAAC 58.310 60.000 12.51 0.00 32.88 3.62
4355 4591 3.074242 CCTCCTCCGTAGTAGGGAACTAT 59.926 52.174 12.51 0.00 46.56 2.12
4366 4602 3.806941 GGAACTATCCATGCTGCCA 57.193 52.632 0.00 0.00 45.79 4.92
4367 4603 2.283145 GGAACTATCCATGCTGCCAT 57.717 50.000 0.00 0.00 45.79 4.40
4368 4604 2.157738 GGAACTATCCATGCTGCCATC 58.842 52.381 0.00 0.00 45.79 3.51
4369 4605 2.487805 GGAACTATCCATGCTGCCATCA 60.488 50.000 0.00 0.00 45.79 3.07
4370 4606 2.563261 ACTATCCATGCTGCCATCAG 57.437 50.000 0.00 0.00 43.16 2.90
4371 4607 1.773052 ACTATCCATGCTGCCATCAGT 59.227 47.619 0.00 0.00 42.29 3.41
4372 4608 2.152016 CTATCCATGCTGCCATCAGTG 58.848 52.381 0.00 0.00 42.29 3.66
4373 4609 0.549469 ATCCATGCTGCCATCAGTGA 59.451 50.000 0.00 0.00 42.29 3.41
4374 4610 0.107361 TCCATGCTGCCATCAGTGAG 60.107 55.000 0.00 0.00 42.29 3.51
4375 4611 1.101635 CCATGCTGCCATCAGTGAGG 61.102 60.000 0.00 0.00 42.29 3.86
4376 4612 0.107361 CATGCTGCCATCAGTGAGGA 60.107 55.000 6.31 0.00 42.29 3.71
4377 4613 0.622136 ATGCTGCCATCAGTGAGGAA 59.378 50.000 6.31 0.00 42.29 3.36
4378 4614 0.401356 TGCTGCCATCAGTGAGGAAA 59.599 50.000 6.31 0.00 42.29 3.13
4379 4615 1.005097 TGCTGCCATCAGTGAGGAAAT 59.995 47.619 6.31 0.00 42.29 2.17
4395 4631 2.165437 GGAAATTGGCAAAGCGTGGATA 59.835 45.455 3.01 0.00 0.00 2.59
4401 4637 0.744414 GCAAAGCGTGGATAGCCTCA 60.744 55.000 0.00 0.00 34.64 3.86
4405 4641 0.390860 AGCGTGGATAGCCTCATGAC 59.609 55.000 0.00 0.00 34.64 3.06
4407 4643 0.034059 CGTGGATAGCCTCATGACCC 59.966 60.000 0.00 0.00 34.31 4.46
4418 4654 0.887247 TCATGACCCCATTTGCAACG 59.113 50.000 0.00 0.00 0.00 4.10
4420 4656 0.887933 ATGACCCCATTTGCAACGTC 59.112 50.000 0.00 0.83 0.00 4.34
4422 4658 1.873270 GACCCCATTTGCAACGTCCC 61.873 60.000 0.00 0.00 0.00 4.46
4423 4659 1.606313 CCCCATTTGCAACGTCCCT 60.606 57.895 0.00 0.00 0.00 4.20
4425 4661 1.540267 CCCATTTGCAACGTCCCTTA 58.460 50.000 0.00 0.00 0.00 2.69
4427 4663 1.201414 CCATTTGCAACGTCCCTTACC 59.799 52.381 0.00 0.00 0.00 2.85
4428 4664 1.201414 CATTTGCAACGTCCCTTACCC 59.799 52.381 0.00 0.00 0.00 3.69
4431 4667 1.376812 GCAACGTCCCTTACCCTGG 60.377 63.158 0.00 0.00 0.00 4.45
4448 4684 3.633525 CCCTGGATGTGGTGTATGATTTG 59.366 47.826 0.00 0.00 0.00 2.32
4450 4686 4.949238 CCTGGATGTGGTGTATGATTTGAA 59.051 41.667 0.00 0.00 0.00 2.69
4451 4687 5.595542 CCTGGATGTGGTGTATGATTTGAAT 59.404 40.000 0.00 0.00 0.00 2.57
4452 4688 6.238842 CCTGGATGTGGTGTATGATTTGAATC 60.239 42.308 0.00 0.00 35.97 2.52
4456 4692 5.729510 TGTGGTGTATGATTTGAATCGAGA 58.270 37.500 0.00 0.00 38.26 4.04
4457 4693 6.348498 TGTGGTGTATGATTTGAATCGAGAT 58.652 36.000 0.00 0.00 38.26 2.75
4458 4694 6.479990 TGTGGTGTATGATTTGAATCGAGATC 59.520 38.462 0.00 0.00 38.26 2.75
4459 4695 6.703607 GTGGTGTATGATTTGAATCGAGATCT 59.296 38.462 0.00 0.00 38.26 2.75
4461 4697 8.421002 TGGTGTATGATTTGAATCGAGATCTTA 58.579 33.333 0.00 0.00 38.26 2.10
4465 4701 9.906660 GTATGATTTGAATCGAGATCTTAGACT 57.093 33.333 0.00 0.00 38.26 3.24
4468 4704 9.343539 TGATTTGAATCGAGATCTTAGACTAGA 57.656 33.333 0.00 0.00 38.26 2.43
4471 4707 7.139896 TGAATCGAGATCTTAGACTAGATGC 57.860 40.000 0.00 6.91 35.06 3.91
4472 4708 6.712547 TGAATCGAGATCTTAGACTAGATGCA 59.287 38.462 0.00 9.61 35.06 3.96
4473 4709 7.392953 TGAATCGAGATCTTAGACTAGATGCAT 59.607 37.037 0.00 0.00 35.06 3.96
4474 4710 7.701539 ATCGAGATCTTAGACTAGATGCATT 57.298 36.000 0.00 0.00 35.06 3.56
4475 4711 6.907741 TCGAGATCTTAGACTAGATGCATTG 58.092 40.000 0.00 0.00 35.06 2.82
4476 4712 5.572511 CGAGATCTTAGACTAGATGCATTGC 59.427 44.000 0.00 0.46 35.06 3.56
4477 4713 6.570186 CGAGATCTTAGACTAGATGCATTGCT 60.570 42.308 10.49 0.00 35.06 3.91
4478 4714 6.457355 AGATCTTAGACTAGATGCATTGCTG 58.543 40.000 10.49 0.00 35.06 4.41
4481 4717 3.191078 AGACTAGATGCATTGCTGGAC 57.809 47.619 10.49 0.00 0.00 4.02
4495 4731 2.376808 CTGGACGATCAGCTTTCAGT 57.623 50.000 0.00 0.00 0.00 3.41
4502 4738 2.788233 CGATCAGCTTTCAGTCTCATCG 59.212 50.000 0.00 0.00 0.00 3.84
4519 4755 8.240682 AGTCTCATCGCTACATAACTGATATTC 58.759 37.037 0.00 0.00 0.00 1.75
4520 4756 8.023706 GTCTCATCGCTACATAACTGATATTCA 58.976 37.037 0.00 0.00 0.00 2.57
4549 4785 4.722526 TTTTTGTGGGAGGAGAGAATGA 57.277 40.909 0.00 0.00 0.00 2.57
4550 4786 4.934797 TTTTGTGGGAGGAGAGAATGAT 57.065 40.909 0.00 0.00 0.00 2.45
4551 4787 4.494091 TTTGTGGGAGGAGAGAATGATC 57.506 45.455 0.00 0.00 0.00 2.92
4552 4788 2.034878 TGTGGGAGGAGAGAATGATCG 58.965 52.381 0.00 0.00 0.00 3.69
4553 4789 2.035632 GTGGGAGGAGAGAATGATCGT 58.964 52.381 0.00 0.00 0.00 3.73
4554 4790 2.034878 TGGGAGGAGAGAATGATCGTG 58.965 52.381 0.00 0.00 0.00 4.35
4555 4791 1.342819 GGGAGGAGAGAATGATCGTGG 59.657 57.143 0.00 0.00 0.00 4.94
4556 4792 2.035632 GGAGGAGAGAATGATCGTGGT 58.964 52.381 0.00 0.00 0.00 4.16
4557 4793 2.223923 GGAGGAGAGAATGATCGTGGTG 60.224 54.545 0.00 0.00 0.00 4.17
4558 4794 1.137872 AGGAGAGAATGATCGTGGTGC 59.862 52.381 0.00 0.00 0.00 5.01
4559 4795 1.137872 GGAGAGAATGATCGTGGTGCT 59.862 52.381 0.00 0.00 0.00 4.40
4560 4796 2.200067 GAGAGAATGATCGTGGTGCTG 58.800 52.381 0.00 0.00 0.00 4.41
4561 4797 0.654683 GAGAATGATCGTGGTGCTGC 59.345 55.000 0.00 0.00 0.00 5.25
4562 4798 0.251354 AGAATGATCGTGGTGCTGCT 59.749 50.000 0.00 0.00 0.00 4.24
4563 4799 1.089920 GAATGATCGTGGTGCTGCTT 58.910 50.000 0.00 0.00 0.00 3.91
4564 4800 1.470098 GAATGATCGTGGTGCTGCTTT 59.530 47.619 0.00 0.00 0.00 3.51
4565 4801 0.806868 ATGATCGTGGTGCTGCTTTG 59.193 50.000 0.00 0.00 0.00 2.77
4566 4802 1.236616 TGATCGTGGTGCTGCTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
4567 4803 2.533391 GATCGTGGTGCTGCTTTGGC 62.533 60.000 0.00 0.00 39.26 4.52
4568 4804 3.289834 CGTGGTGCTGCTTTGGCT 61.290 61.111 0.00 0.00 39.59 4.75
4569 4805 2.647297 GTGGTGCTGCTTTGGCTC 59.353 61.111 0.00 0.00 39.59 4.70
4570 4806 2.598394 TGGTGCTGCTTTGGCTCC 60.598 61.111 0.00 0.00 41.85 4.70
4571 4807 2.282745 GGTGCTGCTTTGGCTCCT 60.283 61.111 0.00 0.00 39.41 3.69
4572 4808 2.338785 GGTGCTGCTTTGGCTCCTC 61.339 63.158 0.00 0.00 39.41 3.71
4573 4809 1.303155 GTGCTGCTTTGGCTCCTCT 60.303 57.895 0.00 0.00 39.59 3.69
4574 4810 1.303074 TGCTGCTTTGGCTCCTCTG 60.303 57.895 0.00 0.00 39.59 3.35
4575 4811 2.045131 GCTGCTTTGGCTCCTCTGG 61.045 63.158 0.00 0.00 39.59 3.86
4576 4812 2.034687 TGCTTTGGCTCCTCTGGC 59.965 61.111 0.00 0.00 39.59 4.85
4579 4815 1.378250 CTTTGGCTCCTCTGGCAGG 60.378 63.158 15.73 5.31 45.15 4.85
4594 4830 2.040145 TGGCAGGACATTCACATTCTCA 59.960 45.455 0.00 0.00 0.00 3.27
4601 4837 4.082625 GGACATTCACATTCTCATTGCACA 60.083 41.667 0.00 0.00 0.00 4.57
4602 4838 5.456548 ACATTCACATTCTCATTGCACAA 57.543 34.783 0.00 0.00 0.00 3.33
4607 4843 3.910170 CACATTCTCATTGCACAAGAACG 59.090 43.478 6.73 2.54 32.22 3.95
4608 4844 3.565482 ACATTCTCATTGCACAAGAACGT 59.435 39.130 6.73 3.09 32.22 3.99
4609 4845 4.754618 ACATTCTCATTGCACAAGAACGTA 59.245 37.500 6.73 0.00 32.22 3.57
4610 4846 4.725556 TTCTCATTGCACAAGAACGTAC 57.274 40.909 0.00 0.00 0.00 3.67
4612 4848 4.123506 TCTCATTGCACAAGAACGTACAA 58.876 39.130 0.00 0.00 0.00 2.41
4613 4849 4.211164 TCTCATTGCACAAGAACGTACAAG 59.789 41.667 0.00 0.00 0.00 3.16
4614 4850 3.874543 TCATTGCACAAGAACGTACAAGT 59.125 39.130 0.00 0.00 0.00 3.16
4615 4851 5.051153 TCATTGCACAAGAACGTACAAGTA 58.949 37.500 0.00 0.00 0.00 2.24
4616 4852 5.699001 TCATTGCACAAGAACGTACAAGTAT 59.301 36.000 0.00 0.00 0.00 2.12
4617 4853 4.983215 TGCACAAGAACGTACAAGTATG 57.017 40.909 0.00 0.00 0.00 2.39
4618 4854 4.373527 TGCACAAGAACGTACAAGTATGT 58.626 39.130 0.00 0.00 43.74 2.29
4619 4855 4.812091 TGCACAAGAACGTACAAGTATGTT 59.188 37.500 15.55 15.55 45.10 2.71
4620 4856 5.294799 TGCACAAGAACGTACAAGTATGTTT 59.705 36.000 16.42 6.70 43.18 2.83
4630 4875 7.570161 ACGTACAAGTATGTTTTAAGCAGAAC 58.430 34.615 0.00 0.00 41.05 3.01
4632 4877 7.740346 CGTACAAGTATGTTTTAAGCAGAACTG 59.260 37.037 0.00 0.00 41.05 3.16
4696 4941 9.272901 TCGTTCTAATTTCAGCAATAATTTTCG 57.727 29.630 0.00 0.00 0.00 3.46
4697 4942 9.272901 CGTTCTAATTTCAGCAATAATTTTCGA 57.727 29.630 0.00 0.00 0.00 3.71
4720 4966 5.722021 ATTTTGATGTTAAGGGTGTCCAC 57.278 39.130 0.00 0.00 34.83 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.178955 TCGTGTGGGAACTGGGAGTA 60.179 55.000 0.00 0.00 0.00 2.59
70 78 0.680280 CGAACGAGGAGGAGGAGGAA 60.680 60.000 0.00 0.00 0.00 3.36
94 102 3.696051 ACATCCAATCCAACCGAATGAAG 59.304 43.478 0.00 0.00 0.00 3.02
117 125 3.243002 GCACAATAATGGAAGCAGAGAGC 60.243 47.826 0.00 0.00 46.19 4.09
120 128 4.397103 TCAAGCACAATAATGGAAGCAGAG 59.603 41.667 0.00 0.00 0.00 3.35
122 130 4.418392 GTCAAGCACAATAATGGAAGCAG 58.582 43.478 0.00 0.00 0.00 4.24
125 133 3.181497 CCCGTCAAGCACAATAATGGAAG 60.181 47.826 0.00 0.00 0.00 3.46
180 200 2.080286 ACAACGATGAGGGAACGAAG 57.920 50.000 0.00 0.00 0.00 3.79
185 205 5.223449 AGAAGTAAACAACGATGAGGGAA 57.777 39.130 0.00 0.00 0.00 3.97
186 206 4.884668 AGAAGTAAACAACGATGAGGGA 57.115 40.909 0.00 0.00 0.00 4.20
191 211 5.064367 CGACGAAAGAAGTAAACAACGATG 58.936 41.667 0.00 0.00 0.00 3.84
194 214 3.205089 GCGACGAAAGAAGTAAACAACG 58.795 45.455 0.00 0.00 0.00 4.10
195 215 3.538780 GGCGACGAAAGAAGTAAACAAC 58.461 45.455 0.00 0.00 0.00 3.32
270 302 9.507329 AGCTCACATATACTCTTTTTCTTTTGA 57.493 29.630 0.00 0.00 0.00 2.69
271 303 9.766277 GAGCTCACATATACTCTTTTTCTTTTG 57.234 33.333 9.40 0.00 0.00 2.44
272 304 8.951243 GGAGCTCACATATACTCTTTTTCTTTT 58.049 33.333 17.19 0.00 0.00 2.27
277 316 7.044798 GTCTGGAGCTCACATATACTCTTTTT 58.955 38.462 17.19 0.00 0.00 1.94
301 343 1.610102 CCTTCTGCTGCTGTTGCTAGT 60.610 52.381 0.00 0.00 40.48 2.57
318 361 1.342672 ACCGGTGGACAACAGACCTT 61.343 55.000 6.12 0.00 0.00 3.50
319 362 1.342672 AACCGGTGGACAACAGACCT 61.343 55.000 8.52 0.00 0.00 3.85
320 363 0.464916 AAACCGGTGGACAACAGACC 60.465 55.000 8.52 0.00 0.00 3.85
352 436 5.191426 ACTCCTGAAACATGGATGATTCTG 58.809 41.667 10.04 9.28 39.45 3.02
365 449 1.346068 AGCAGTCCTGACTCCTGAAAC 59.654 52.381 0.00 0.00 40.20 2.78
366 450 1.722034 AGCAGTCCTGACTCCTGAAA 58.278 50.000 0.00 0.00 40.20 2.69
370 454 1.229145 AGCAGCAGTCCTGACTCCT 60.229 57.895 0.00 0.00 44.64 3.69
371 455 1.217779 GAGCAGCAGTCCTGACTCC 59.782 63.158 0.00 0.00 44.64 3.85
372 456 1.468985 TAGAGCAGCAGTCCTGACTC 58.531 55.000 0.00 1.96 44.64 3.36
373 457 1.755959 CATAGAGCAGCAGTCCTGACT 59.244 52.381 0.00 0.00 44.64 3.41
374 458 1.805871 GCATAGAGCAGCAGTCCTGAC 60.806 57.143 0.00 0.00 44.64 3.51
394 478 7.630470 ATCACGCGAATAATTAGAAGAGAAG 57.370 36.000 15.93 0.00 0.00 2.85
404 488 6.038161 TGAATGGAAGAATCACGCGAATAATT 59.962 34.615 15.93 6.41 0.00 1.40
405 489 5.527214 TGAATGGAAGAATCACGCGAATAAT 59.473 36.000 15.93 0.00 0.00 1.28
408 492 3.063997 GTGAATGGAAGAATCACGCGAAT 59.936 43.478 15.93 2.36 34.72 3.34
411 495 1.731709 TGTGAATGGAAGAATCACGCG 59.268 47.619 3.53 3.53 44.95 6.01
419 503 5.642063 GGAACGAGTATTTGTGAATGGAAGA 59.358 40.000 0.00 0.00 0.00 2.87
420 504 5.869350 GGAACGAGTATTTGTGAATGGAAG 58.131 41.667 0.00 0.00 0.00 3.46
439 531 7.129109 TGAGTCATCTATTTTGAAACGGAAC 57.871 36.000 0.00 0.00 0.00 3.62
440 532 7.444183 AGTTGAGTCATCTATTTTGAAACGGAA 59.556 33.333 1.70 0.00 0.00 4.30
442 534 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
444 536 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
500 592 8.398665 GCTCCGTTTCAAAATAGATAACTCAAT 58.601 33.333 0.00 0.00 0.00 2.57
501 593 7.412563 CGCTCCGTTTCAAAATAGATAACTCAA 60.413 37.037 0.00 0.00 0.00 3.02
502 594 6.035650 CGCTCCGTTTCAAAATAGATAACTCA 59.964 38.462 0.00 0.00 0.00 3.41
503 595 6.255020 TCGCTCCGTTTCAAAATAGATAACTC 59.745 38.462 0.00 0.00 0.00 3.01
504 596 6.103997 TCGCTCCGTTTCAAAATAGATAACT 58.896 36.000 0.00 0.00 0.00 2.24
505 597 6.035758 ACTCGCTCCGTTTCAAAATAGATAAC 59.964 38.462 0.00 0.00 0.00 1.89
506 598 6.103997 ACTCGCTCCGTTTCAAAATAGATAA 58.896 36.000 0.00 0.00 0.00 1.75
507 599 5.657474 ACTCGCTCCGTTTCAAAATAGATA 58.343 37.500 0.00 0.00 0.00 1.98
508 600 4.504858 ACTCGCTCCGTTTCAAAATAGAT 58.495 39.130 0.00 0.00 0.00 1.98
509 601 3.921677 ACTCGCTCCGTTTCAAAATAGA 58.078 40.909 0.00 0.00 0.00 1.98
510 602 5.291128 ACATACTCGCTCCGTTTCAAAATAG 59.709 40.000 0.00 0.00 0.00 1.73
511 603 5.172934 ACATACTCGCTCCGTTTCAAAATA 58.827 37.500 0.00 0.00 0.00 1.40
512 604 4.000988 ACATACTCGCTCCGTTTCAAAAT 58.999 39.130 0.00 0.00 0.00 1.82
513 605 3.395639 ACATACTCGCTCCGTTTCAAAA 58.604 40.909 0.00 0.00 0.00 2.44
514 606 3.034721 ACATACTCGCTCCGTTTCAAA 57.965 42.857 0.00 0.00 0.00 2.69
515 607 2.736144 ACATACTCGCTCCGTTTCAA 57.264 45.000 0.00 0.00 0.00 2.69
516 608 2.751259 AGTACATACTCGCTCCGTTTCA 59.249 45.455 0.00 0.00 0.00 2.69
517 609 3.417690 AGTACATACTCGCTCCGTTTC 57.582 47.619 0.00 0.00 0.00 2.78
518 610 3.944015 AGTAGTACATACTCGCTCCGTTT 59.056 43.478 2.52 0.00 40.99 3.60
519 611 3.539604 AGTAGTACATACTCGCTCCGTT 58.460 45.455 2.52 0.00 40.99 4.44
520 612 3.191078 AGTAGTACATACTCGCTCCGT 57.809 47.619 2.52 0.00 40.99 4.69
521 613 3.123284 GCTAGTAGTACATACTCGCTCCG 59.877 52.174 15.44 0.00 45.32 4.63
522 614 4.666928 GCTAGTAGTACATACTCGCTCC 57.333 50.000 15.44 0.00 45.32 4.70
526 618 6.690530 AGAGGTAGCTAGTAGTACATACTCG 58.309 44.000 2.52 4.72 43.90 4.18
527 619 7.603784 GGAAGAGGTAGCTAGTAGTACATACTC 59.396 44.444 2.52 0.99 43.90 2.59
528 620 7.072202 TGGAAGAGGTAGCTAGTAGTACATACT 59.928 40.741 2.52 3.15 46.70 2.12
529 621 7.222872 TGGAAGAGGTAGCTAGTAGTACATAC 58.777 42.308 2.52 0.55 34.30 2.39
530 622 7.384524 TGGAAGAGGTAGCTAGTAGTACATA 57.615 40.000 2.52 0.00 0.00 2.29
531 623 6.263412 TGGAAGAGGTAGCTAGTAGTACAT 57.737 41.667 2.52 0.00 0.00 2.29
532 624 5.705397 TGGAAGAGGTAGCTAGTAGTACA 57.295 43.478 2.52 0.00 0.00 2.90
533 625 6.297582 TCATGGAAGAGGTAGCTAGTAGTAC 58.702 44.000 0.00 0.00 0.00 2.73
534 626 6.511017 TCATGGAAGAGGTAGCTAGTAGTA 57.489 41.667 0.00 0.00 0.00 1.82
535 627 5.390087 TCATGGAAGAGGTAGCTAGTAGT 57.610 43.478 0.00 0.00 0.00 2.73
536 628 5.772672 ACATCATGGAAGAGGTAGCTAGTAG 59.227 44.000 0.00 0.00 29.67 2.57
537 629 5.706447 ACATCATGGAAGAGGTAGCTAGTA 58.294 41.667 0.00 0.00 29.67 1.82
538 630 4.551671 ACATCATGGAAGAGGTAGCTAGT 58.448 43.478 0.00 0.00 29.67 2.57
549 641 8.571336 AGTTAAGACAAGAAAACATCATGGAAG 58.429 33.333 0.00 0.00 31.00 3.46
567 659 8.700644 CGGCATACATACATAGAAAGTTAAGAC 58.299 37.037 0.00 0.00 0.00 3.01
574 666 4.152402 GCACCGGCATACATACATAGAAAG 59.848 45.833 0.00 0.00 40.72 2.62
580 673 3.981071 ATAGCACCGGCATACATACAT 57.019 42.857 0.00 0.00 44.61 2.29
592 685 2.058798 CGGCATGTTACTATAGCACCG 58.941 52.381 0.00 0.00 0.00 4.94
594 687 2.476619 CAGCGGCATGTTACTATAGCAC 59.523 50.000 1.45 0.00 0.00 4.40
611 706 1.070445 CCTAAGGGGAGATGCAGCG 59.930 63.158 0.00 0.00 37.23 5.18
661 758 8.067784 TCGTGTATTCTTAGTTTCTTTTGCAAG 58.932 33.333 0.00 0.00 0.00 4.01
665 762 7.952637 GCTCTCGTGTATTCTTAGTTTCTTTTG 59.047 37.037 0.00 0.00 0.00 2.44
666 763 7.656137 TGCTCTCGTGTATTCTTAGTTTCTTTT 59.344 33.333 0.00 0.00 0.00 2.27
674 771 9.469807 AATAATTCTGCTCTCGTGTATTCTTAG 57.530 33.333 0.00 0.00 0.00 2.18
686 783 4.880696 AGGCTGTTCAATAATTCTGCTCTC 59.119 41.667 0.00 0.00 0.00 3.20
708 805 9.784531 TGCAGGAAAAGAGATTAATAGGAATAG 57.215 33.333 0.00 0.00 0.00 1.73
714 811 9.213799 GGATACTGCAGGAAAAGAGATTAATAG 57.786 37.037 19.93 0.00 0.00 1.73
754 851 3.119955 TCAGACTGAAGTTCGTGGTATCG 60.120 47.826 1.64 0.00 0.00 2.92
755 852 4.436242 TCAGACTGAAGTTCGTGGTATC 57.564 45.455 1.64 0.00 0.00 2.24
762 859 4.675190 ATTGCAATCAGACTGAAGTTCG 57.325 40.909 9.70 0.00 0.00 3.95
763 860 7.138692 AGTAATTGCAATCAGACTGAAGTTC 57.861 36.000 13.38 0.00 0.00 3.01
792 891 2.728225 CGACGTGTGCGAGTAAGAGAAT 60.728 50.000 0.00 0.00 42.00 2.40
797 896 0.907837 CATCGACGTGTGCGAGTAAG 59.092 55.000 0.00 0.00 41.49 2.34
804 903 1.130613 GCAGAACATCGACGTGTGC 59.869 57.895 3.79 3.79 31.49 4.57
805 904 0.667487 AGGCAGAACATCGACGTGTG 60.667 55.000 0.00 0.00 31.49 3.82
812 911 3.911989 GATGCAAGGCAGAACATCG 57.088 52.632 0.00 0.00 43.65 3.84
835 934 2.351418 GGCAACTTGTTGAAAAACAGGC 59.649 45.455 16.57 0.00 33.62 4.85
836 935 3.594134 TGGCAACTTGTTGAAAAACAGG 58.406 40.909 16.57 0.00 36.06 4.00
854 953 7.434307 CAGTAAACTGAATGAATGAATCATGGC 59.566 37.037 3.99 0.00 45.52 4.40
900 999 1.032014 GAAAGCCACAGAACCTGCAA 58.968 50.000 0.00 0.00 34.37 4.08
901 1000 0.183492 AGAAAGCCACAGAACCTGCA 59.817 50.000 0.00 0.00 34.37 4.41
902 1001 1.807142 GTAGAAAGCCACAGAACCTGC 59.193 52.381 0.00 0.00 34.37 4.85
903 1002 2.069273 CGTAGAAAGCCACAGAACCTG 58.931 52.381 0.00 0.00 37.52 4.00
904 1003 1.608283 GCGTAGAAAGCCACAGAACCT 60.608 52.381 0.00 0.00 0.00 3.50
910 1009 2.314647 GCACGCGTAGAAAGCCACA 61.315 57.895 13.44 0.00 0.00 4.17
922 1021 1.221466 TTCAGTGAAGAAGGCACGCG 61.221 55.000 3.53 3.53 41.04 6.01
924 1023 1.581934 TGTTCAGTGAAGAAGGCACG 58.418 50.000 5.62 0.00 41.04 5.34
945 1044 2.922955 TGGGGGTATGGATTTCAGACAA 59.077 45.455 0.00 0.00 39.21 3.18
956 1055 0.548989 TCATCGGTTTGGGGGTATGG 59.451 55.000 0.00 0.00 0.00 2.74
957 1056 2.092646 TCTTCATCGGTTTGGGGGTATG 60.093 50.000 0.00 0.00 0.00 2.39
958 1057 2.201830 TCTTCATCGGTTTGGGGGTAT 58.798 47.619 0.00 0.00 0.00 2.73
960 1059 0.774908 TTCTTCATCGGTTTGGGGGT 59.225 50.000 0.00 0.00 0.00 4.95
965 1064 6.642131 ACATTGTGATTTTCTTCATCGGTTTG 59.358 34.615 0.00 0.00 0.00 2.93
1057 1176 3.857109 AATTTGCGGCGGTTGGTGC 62.857 57.895 9.78 0.00 0.00 5.01
1066 1185 0.447406 GCCATTTTGGAATTTGCGGC 59.553 50.000 0.00 0.00 40.96 6.53
1089 1208 1.382695 GGTAGCTGGTAGGGCTGGA 60.383 63.158 0.00 0.00 40.52 3.86
1103 1222 0.904649 TGTGAGGCATGTGAGGGTAG 59.095 55.000 0.00 0.00 0.00 3.18
1170 1295 2.487934 CAGTTTATGAGGATGAGGCCG 58.512 52.381 0.00 0.00 0.00 6.13
1183 1308 2.555199 GACTGATGCTCCGCAGTTTAT 58.445 47.619 0.00 0.00 44.77 1.40
1220 1345 0.612732 TCCGTCCCAAGTACGACCAT 60.613 55.000 0.00 0.00 42.90 3.55
1239 1364 1.371558 GAACTTGGAGCCGGTGTCT 59.628 57.895 1.90 0.00 0.00 3.41
1320 1445 2.003672 CGCGGTCATAAAAGGGACG 58.996 57.895 0.00 0.00 34.87 4.79
1348 1473 6.174049 AGAAGGAATAGGTGTAGTTTGAAGC 58.826 40.000 0.00 0.00 0.00 3.86
1390 1515 4.437772 AGAAGTAGAGGCGTAAGAACAC 57.562 45.455 0.00 0.00 43.02 3.32
1441 1566 1.736681 GACACTGAAGAAGGCATCTGC 59.263 52.381 0.00 0.00 38.79 4.26
1511 1636 0.391661 GGCAGAACTGATCGCCTGAA 60.392 55.000 5.97 0.00 41.51 3.02
1623 1748 3.559238 ATCTCAATGCCGTTCACAAAC 57.441 42.857 0.00 0.00 0.00 2.93
1647 1772 2.972021 TGTGAAGATGTCAGGAGTGGAA 59.028 45.455 0.00 0.00 36.74 3.53
1720 1848 4.100084 CTGGACGGCCATGGCAGA 62.100 66.667 38.56 18.78 44.91 4.26
1724 1852 0.250038 CATAGTCTGGACGGCCATGG 60.250 60.000 12.52 7.63 44.91 3.66
1860 2000 9.209175 GTATAGGTGATAGTCAAATTGTCATCC 57.791 37.037 0.00 0.00 0.00 3.51
1958 2098 3.926616 AGGTTGTAGTTCAGGTTGATCG 58.073 45.455 0.00 0.00 0.00 3.69
2022 2162 5.248640 TGAATCTCACAGAAATGGAACCTC 58.751 41.667 0.00 0.00 0.00 3.85
2139 2279 4.266976 GTGTATGTTGTTCTACCGATTCCG 59.733 45.833 0.00 0.00 0.00 4.30
2187 2327 3.402681 ATGTCCACCTGGCCGGAG 61.403 66.667 15.09 8.63 36.31 4.63
2193 2333 1.466856 CAATCCACATGTCCACCTGG 58.533 55.000 0.00 0.00 0.00 4.45
2302 2445 2.038269 GCCCGGCAAGATTGTTCGA 61.038 57.895 3.91 0.00 32.05 3.71
2380 2523 1.523095 GATAGCCGCGACAGATTTCAC 59.477 52.381 8.23 0.00 0.00 3.18
2483 2626 7.012232 CCTTGGATATCTTCTTCTTCTTCTTGC 59.988 40.741 2.05 0.00 0.00 4.01
2484 2627 8.263640 TCCTTGGATATCTTCTTCTTCTTCTTG 58.736 37.037 2.05 0.00 0.00 3.02
3244 3423 1.664649 CGCAGAGCACCTCGAACAA 60.665 57.895 0.00 0.00 35.36 2.83
3618 3803 2.799916 GTCGTGCTCGTCGTGGTC 60.800 66.667 8.17 0.00 38.33 4.02
3629 3814 1.811266 ATGCTCATCGTGGTCGTGC 60.811 57.895 0.00 0.00 38.33 5.34
3746 3931 2.493675 TGAATCTGAAGAGGGACTGTCG 59.506 50.000 1.07 0.00 41.55 4.35
3759 3944 5.416639 CCAAGAATGTTGTCCATGAATCTGA 59.583 40.000 0.00 0.00 32.82 3.27
3893 4081 9.069082 GTCTGGTACACATAGAATAGATACACT 57.931 37.037 0.00 0.00 0.00 3.55
3898 4086 8.712228 TGATGTCTGGTACACATAGAATAGAT 57.288 34.615 0.00 0.00 42.09 1.98
3900 4088 8.197439 TGTTGATGTCTGGTACACATAGAATAG 58.803 37.037 0.00 0.00 42.09 1.73
3902 4090 6.946340 TGTTGATGTCTGGTACACATAGAAT 58.054 36.000 0.00 0.00 42.09 2.40
3903 4091 6.353404 TGTTGATGTCTGGTACACATAGAA 57.647 37.500 0.00 0.00 42.09 2.10
3905 4093 6.340522 TGATGTTGATGTCTGGTACACATAG 58.659 40.000 0.00 0.00 42.09 2.23
3906 4094 6.293004 TGATGTTGATGTCTGGTACACATA 57.707 37.500 0.00 0.00 42.09 2.29
3907 4095 5.164620 TGATGTTGATGTCTGGTACACAT 57.835 39.130 0.00 0.00 42.09 3.21
3908 4096 4.615588 TGATGTTGATGTCTGGTACACA 57.384 40.909 0.00 0.00 42.09 3.72
3909 4097 5.412594 ACAATGATGTTGATGTCTGGTACAC 59.587 40.000 0.00 0.00 37.44 2.90
3926 4114 6.868864 GGCGACATCTATACAGTTACAATGAT 59.131 38.462 0.00 0.00 0.00 2.45
3964 4152 3.426159 GCAAGTAGCAATAAGAAGCGCAA 60.426 43.478 11.47 0.00 44.79 4.85
3978 4166 1.273606 TCAGACTGACCAGCAAGTAGC 59.726 52.381 0.00 0.00 46.19 3.58
4001 4189 3.533547 AGCTTGCTTGCATTCACAAAAA 58.466 36.364 0.00 0.00 34.99 1.94
4021 4209 3.384789 TGAACGACATGAAGAGGGGATAG 59.615 47.826 0.00 0.00 0.00 2.08
4027 4215 4.748892 ACATACTGAACGACATGAAGAGG 58.251 43.478 0.00 0.00 0.00 3.69
4030 4218 4.327357 GGTGACATACTGAACGACATGAAG 59.673 45.833 0.00 0.00 0.00 3.02
4043 4231 5.335661 GGCATTTTTCTTTCGGTGACATACT 60.336 40.000 0.00 0.00 0.00 2.12
4046 4234 3.573967 AGGCATTTTTCTTTCGGTGACAT 59.426 39.130 0.00 0.00 0.00 3.06
4089 4277 3.023832 AGTTACATGCCCTTACCAATGC 58.976 45.455 0.00 0.00 0.00 3.56
4118 4339 9.703892 AATCGTATGAATGAAATCCAACAAAAA 57.296 25.926 0.00 0.00 0.00 1.94
4140 4361 8.994429 ATACTAGCATATGAAAGAGGAAATCG 57.006 34.615 6.97 0.00 0.00 3.34
4156 4377 7.967908 ACCAAACAAGCTCTATATACTAGCAT 58.032 34.615 12.62 1.22 38.75 3.79
4157 4378 7.361457 ACCAAACAAGCTCTATATACTAGCA 57.639 36.000 12.62 0.00 38.75 3.49
4158 4379 7.171678 CCAACCAAACAAGCTCTATATACTAGC 59.828 40.741 4.74 4.74 36.48 3.42
4159 4380 8.204836 ACCAACCAAACAAGCTCTATATACTAG 58.795 37.037 0.00 0.00 0.00 2.57
4217 4438 9.846248 CAGAGGTTTTATTTGAAAATGTAGGAG 57.154 33.333 0.00 0.00 0.00 3.69
4218 4439 8.303876 GCAGAGGTTTTATTTGAAAATGTAGGA 58.696 33.333 0.00 0.00 0.00 2.94
4219 4440 7.545615 GGCAGAGGTTTTATTTGAAAATGTAGG 59.454 37.037 0.00 0.00 0.00 3.18
4220 4441 7.545615 GGGCAGAGGTTTTATTTGAAAATGTAG 59.454 37.037 0.00 0.00 0.00 2.74
4221 4442 7.382898 GGGCAGAGGTTTTATTTGAAAATGTA 58.617 34.615 0.00 0.00 0.00 2.29
4222 4443 6.230472 GGGCAGAGGTTTTATTTGAAAATGT 58.770 36.000 0.00 0.00 0.00 2.71
4223 4444 5.348451 CGGGCAGAGGTTTTATTTGAAAATG 59.652 40.000 0.00 0.00 0.00 2.32
4238 4459 2.727103 TTTTTCAACCGGGCAGAGG 58.273 52.632 6.32 0.00 0.00 3.69
4258 4479 4.916041 TTCACTCATGACCTCAAGGATT 57.084 40.909 2.30 0.00 38.94 3.01
4259 4480 6.100859 ACATATTCACTCATGACCTCAAGGAT 59.899 38.462 2.30 0.00 38.94 3.24
4269 4490 7.281549 CAGGTGATGAAACATATTCACTCATGA 59.718 37.037 0.00 0.00 38.76 3.07
4271 4492 6.544931 CCAGGTGATGAAACATATTCACTCAT 59.455 38.462 3.64 0.00 38.76 2.90
4277 4498 7.068593 TCCATTTCCAGGTGATGAAACATATTC 59.931 37.037 6.43 0.00 33.64 1.75
4279 4500 6.322201 GTCCATTTCCAGGTGATGAAACATAT 59.678 38.462 6.43 0.00 33.64 1.78
4280 4501 5.652014 GTCCATTTCCAGGTGATGAAACATA 59.348 40.000 6.43 0.00 33.64 2.29
4340 4561 3.827302 AGCATGGATAGTTCCCTACTACG 59.173 47.826 0.00 0.00 41.99 3.51
4341 4562 4.561734 GCAGCATGGATAGTTCCCTACTAC 60.562 50.000 0.00 0.00 41.83 2.73
4351 4587 1.773052 ACTGATGGCAGCATGGATAGT 59.227 47.619 5.64 0.00 46.26 2.12
4352 4588 2.152016 CACTGATGGCAGCATGGATAG 58.848 52.381 5.64 0.00 46.26 2.08
4355 4591 0.107361 CTCACTGATGGCAGCATGGA 60.107 55.000 5.64 6.10 46.26 3.41
4362 4598 2.449464 CCAATTTCCTCACTGATGGCA 58.551 47.619 0.00 0.00 0.00 4.92
4363 4599 1.135721 GCCAATTTCCTCACTGATGGC 59.864 52.381 3.82 3.82 44.24 4.40
4364 4600 2.449464 TGCCAATTTCCTCACTGATGG 58.551 47.619 0.00 0.00 0.00 3.51
4365 4601 4.491676 CTTTGCCAATTTCCTCACTGATG 58.508 43.478 0.00 0.00 0.00 3.07
4366 4602 3.056322 GCTTTGCCAATTTCCTCACTGAT 60.056 43.478 0.00 0.00 0.00 2.90
4367 4603 2.297033 GCTTTGCCAATTTCCTCACTGA 59.703 45.455 0.00 0.00 0.00 3.41
4368 4604 2.680577 GCTTTGCCAATTTCCTCACTG 58.319 47.619 0.00 0.00 0.00 3.66
4369 4605 1.270550 CGCTTTGCCAATTTCCTCACT 59.729 47.619 0.00 0.00 0.00 3.41
4370 4606 1.000274 ACGCTTTGCCAATTTCCTCAC 60.000 47.619 0.00 0.00 0.00 3.51
4371 4607 1.000385 CACGCTTTGCCAATTTCCTCA 60.000 47.619 0.00 0.00 0.00 3.86
4372 4608 1.669795 CCACGCTTTGCCAATTTCCTC 60.670 52.381 0.00 0.00 0.00 3.71
4373 4609 0.318120 CCACGCTTTGCCAATTTCCT 59.682 50.000 0.00 0.00 0.00 3.36
4374 4610 0.316841 TCCACGCTTTGCCAATTTCC 59.683 50.000 0.00 0.00 0.00 3.13
4375 4611 2.368655 ATCCACGCTTTGCCAATTTC 57.631 45.000 0.00 0.00 0.00 2.17
4376 4612 2.417243 GCTATCCACGCTTTGCCAATTT 60.417 45.455 0.00 0.00 0.00 1.82
4377 4613 1.134946 GCTATCCACGCTTTGCCAATT 59.865 47.619 0.00 0.00 0.00 2.32
4378 4614 0.740737 GCTATCCACGCTTTGCCAAT 59.259 50.000 0.00 0.00 0.00 3.16
4379 4615 1.312371 GGCTATCCACGCTTTGCCAA 61.312 55.000 0.00 0.00 40.04 4.52
4395 4631 0.685458 GCAAATGGGGTCATGAGGCT 60.685 55.000 0.00 0.00 33.18 4.58
4401 4637 0.887933 GACGTTGCAAATGGGGTCAT 59.112 50.000 0.00 0.00 37.08 3.06
4405 4641 1.184970 AAGGGACGTTGCAAATGGGG 61.185 55.000 0.00 0.00 37.08 4.96
4407 4643 1.201414 GGTAAGGGACGTTGCAAATGG 59.799 52.381 0.00 0.00 37.08 3.16
4418 4654 0.546598 CCACATCCAGGGTAAGGGAC 59.453 60.000 0.00 0.00 35.67 4.46
4420 4656 0.255890 CACCACATCCAGGGTAAGGG 59.744 60.000 0.00 0.00 35.09 3.95
4422 4658 3.454447 TCATACACCACATCCAGGGTAAG 59.546 47.826 0.00 0.00 35.09 2.34
4423 4659 3.455849 TCATACACCACATCCAGGGTAA 58.544 45.455 0.00 0.00 35.09 2.85
4425 4661 1.965414 TCATACACCACATCCAGGGT 58.035 50.000 0.00 0.00 38.10 4.34
4427 4663 4.525996 TCAAATCATACACCACATCCAGG 58.474 43.478 0.00 0.00 0.00 4.45
4428 4664 6.512253 CGATTCAAATCATACACCACATCCAG 60.512 42.308 3.81 0.00 35.11 3.86
4431 4667 6.479990 TCTCGATTCAAATCATACACCACATC 59.520 38.462 3.81 0.00 35.11 3.06
4448 4684 7.139896 TGCATCTAGTCTAAGATCTCGATTC 57.860 40.000 0.00 0.00 33.87 2.52
4450 4686 7.537715 CAATGCATCTAGTCTAAGATCTCGAT 58.462 38.462 0.00 0.00 33.87 3.59
4451 4687 6.569418 GCAATGCATCTAGTCTAAGATCTCGA 60.569 42.308 0.00 0.00 33.87 4.04
4452 4688 5.572511 GCAATGCATCTAGTCTAAGATCTCG 59.427 44.000 0.00 0.00 33.87 4.04
4456 4692 5.306419 TCCAGCAATGCATCTAGTCTAAGAT 59.694 40.000 8.35 0.00 36.64 2.40
4457 4693 4.651045 TCCAGCAATGCATCTAGTCTAAGA 59.349 41.667 8.35 0.00 0.00 2.10
4458 4694 4.749099 GTCCAGCAATGCATCTAGTCTAAG 59.251 45.833 8.35 0.00 0.00 2.18
4459 4695 4.697514 GTCCAGCAATGCATCTAGTCTAA 58.302 43.478 8.35 0.00 0.00 2.10
4461 4697 2.482664 CGTCCAGCAATGCATCTAGTCT 60.483 50.000 8.35 0.00 0.00 3.24
4465 4701 2.102925 TGATCGTCCAGCAATGCATCTA 59.897 45.455 8.35 0.00 0.00 1.98
4466 4702 1.134310 TGATCGTCCAGCAATGCATCT 60.134 47.619 8.35 0.00 0.00 2.90
4467 4703 1.263484 CTGATCGTCCAGCAATGCATC 59.737 52.381 8.35 0.75 0.00 3.91
4468 4704 1.306148 CTGATCGTCCAGCAATGCAT 58.694 50.000 8.35 0.00 0.00 3.96
4469 4705 2.771435 CTGATCGTCCAGCAATGCA 58.229 52.632 8.35 0.00 0.00 3.96
4476 4712 2.094286 AGACTGAAAGCTGATCGTCCAG 60.094 50.000 14.87 0.00 37.60 3.86
4477 4713 1.895798 AGACTGAAAGCTGATCGTCCA 59.104 47.619 14.87 0.00 37.60 4.02
4478 4714 2.094494 TGAGACTGAAAGCTGATCGTCC 60.094 50.000 14.87 10.38 37.60 4.79
4481 4717 2.788233 CGATGAGACTGAAAGCTGATCG 59.212 50.000 0.00 0.00 42.96 3.69
4495 4731 8.110860 TGAATATCAGTTATGTAGCGATGAGA 57.889 34.615 0.00 0.00 0.00 3.27
4537 4773 2.801342 GCACCACGATCATTCTCTCCTC 60.801 54.545 0.00 0.00 0.00 3.71
4538 4774 1.137872 GCACCACGATCATTCTCTCCT 59.862 52.381 0.00 0.00 0.00 3.69
4539 4775 1.137872 AGCACCACGATCATTCTCTCC 59.862 52.381 0.00 0.00 0.00 3.71
4540 4776 2.200067 CAGCACCACGATCATTCTCTC 58.800 52.381 0.00 0.00 0.00 3.20
4541 4777 1.741732 GCAGCACCACGATCATTCTCT 60.742 52.381 0.00 0.00 0.00 3.10
4542 4778 0.654683 GCAGCACCACGATCATTCTC 59.345 55.000 0.00 0.00 0.00 2.87
4543 4779 0.251354 AGCAGCACCACGATCATTCT 59.749 50.000 0.00 0.00 0.00 2.40
4544 4780 1.089920 AAGCAGCACCACGATCATTC 58.910 50.000 0.00 0.00 0.00 2.67
4545 4781 1.200716 CAAAGCAGCACCACGATCATT 59.799 47.619 0.00 0.00 0.00 2.57
4546 4782 0.806868 CAAAGCAGCACCACGATCAT 59.193 50.000 0.00 0.00 0.00 2.45
4547 4783 1.236616 CCAAAGCAGCACCACGATCA 61.237 55.000 0.00 0.00 0.00 2.92
4548 4784 1.503542 CCAAAGCAGCACCACGATC 59.496 57.895 0.00 0.00 0.00 3.69
4549 4785 2.629656 GCCAAAGCAGCACCACGAT 61.630 57.895 0.00 0.00 39.53 3.73
4550 4786 3.286751 GCCAAAGCAGCACCACGA 61.287 61.111 0.00 0.00 39.53 4.35
4551 4787 3.259425 GAGCCAAAGCAGCACCACG 62.259 63.158 0.00 0.00 43.56 4.94
4552 4788 2.647297 GAGCCAAAGCAGCACCAC 59.353 61.111 0.00 0.00 43.56 4.16
4553 4789 2.598394 GGAGCCAAAGCAGCACCA 60.598 61.111 0.00 0.00 43.56 4.17
4554 4790 2.282745 AGGAGCCAAAGCAGCACC 60.283 61.111 0.00 0.00 43.56 5.01
4555 4791 1.303155 AGAGGAGCCAAAGCAGCAC 60.303 57.895 0.00 0.00 43.56 4.40
4556 4792 1.303074 CAGAGGAGCCAAAGCAGCA 60.303 57.895 0.00 0.00 43.56 4.41
4557 4793 2.045131 CCAGAGGAGCCAAAGCAGC 61.045 63.158 0.00 0.00 43.56 5.25
4558 4794 2.045131 GCCAGAGGAGCCAAAGCAG 61.045 63.158 0.00 0.00 43.56 4.24
4559 4795 2.034687 GCCAGAGGAGCCAAAGCA 59.965 61.111 0.00 0.00 43.56 3.91
4560 4796 2.034687 TGCCAGAGGAGCCAAAGC 59.965 61.111 0.00 0.00 40.32 3.51
4561 4797 1.378250 CCTGCCAGAGGAGCCAAAG 60.378 63.158 0.00 0.00 46.33 2.77
4562 4798 1.847506 TCCTGCCAGAGGAGCCAAA 60.848 57.895 0.00 0.00 46.96 3.28
4563 4799 2.203983 TCCTGCCAGAGGAGCCAA 60.204 61.111 0.00 0.00 46.96 4.52
4569 4805 0.325933 TGTGAATGTCCTGCCAGAGG 59.674 55.000 0.00 0.00 44.45 3.69
4570 4806 2.414994 ATGTGAATGTCCTGCCAGAG 57.585 50.000 0.00 0.00 0.00 3.35
4571 4807 2.306805 AGAATGTGAATGTCCTGCCAGA 59.693 45.455 0.00 0.00 0.00 3.86
4572 4808 2.681848 GAGAATGTGAATGTCCTGCCAG 59.318 50.000 0.00 0.00 0.00 4.85
4573 4809 2.040145 TGAGAATGTGAATGTCCTGCCA 59.960 45.455 0.00 0.00 0.00 4.92
4574 4810 2.715046 TGAGAATGTGAATGTCCTGCC 58.285 47.619 0.00 0.00 0.00 4.85
4575 4811 4.669318 CAATGAGAATGTGAATGTCCTGC 58.331 43.478 0.00 0.00 0.00 4.85
4576 4812 4.157105 TGCAATGAGAATGTGAATGTCCTG 59.843 41.667 0.00 0.00 0.00 3.86
4579 4815 5.050644 TGTGCAATGAGAATGTGAATGTC 57.949 39.130 0.00 0.00 0.00 3.06
4584 4820 4.319694 CGTTCTTGTGCAATGAGAATGTGA 60.320 41.667 14.45 0.00 33.71 3.58
4586 4822 3.565482 ACGTTCTTGTGCAATGAGAATGT 59.435 39.130 19.29 19.29 42.03 2.71
4594 4830 5.468746 ACATACTTGTACGTTCTTGTGCAAT 59.531 36.000 0.00 0.00 42.28 3.56
4601 4837 8.145316 TGCTTAAAACATACTTGTACGTTCTT 57.855 30.769 0.00 0.00 34.06 2.52
4602 4838 7.654520 TCTGCTTAAAACATACTTGTACGTTCT 59.345 33.333 0.00 0.00 34.06 3.01
4607 4843 7.534239 GCAGTTCTGCTTAAAACATACTTGTAC 59.466 37.037 16.29 0.00 34.06 2.90
4608 4844 7.227711 TGCAGTTCTGCTTAAAACATACTTGTA 59.772 33.333 22.44 0.00 33.73 2.41
4609 4845 6.039270 TGCAGTTCTGCTTAAAACATACTTGT 59.961 34.615 22.44 0.00 34.87 3.16
4610 4846 6.437928 TGCAGTTCTGCTTAAAACATACTTG 58.562 36.000 22.44 0.00 35.49 3.16
4612 4848 5.765182 ACTGCAGTTCTGCTTAAAACATACT 59.235 36.000 15.25 0.00 35.49 2.12
4613 4849 6.002062 ACTGCAGTTCTGCTTAAAACATAC 57.998 37.500 15.25 0.00 35.49 2.39
4614 4850 7.737972 TTACTGCAGTTCTGCTTAAAACATA 57.262 32.000 27.06 0.00 35.49 2.29
4615 4851 6.633500 TTACTGCAGTTCTGCTTAAAACAT 57.367 33.333 27.06 0.00 35.49 2.71
4616 4852 6.443934 TTTACTGCAGTTCTGCTTAAAACA 57.556 33.333 27.06 0.00 35.49 2.83
4617 4853 6.918022 ACATTTACTGCAGTTCTGCTTAAAAC 59.082 34.615 27.06 0.00 31.69 2.43
4618 4854 7.038154 ACATTTACTGCAGTTCTGCTTAAAA 57.962 32.000 27.06 16.49 31.69 1.52
4619 4855 6.633500 ACATTTACTGCAGTTCTGCTTAAA 57.367 33.333 27.06 17.24 35.49 1.52
4620 4856 7.094805 CCTTACATTTACTGCAGTTCTGCTTAA 60.095 37.037 27.06 8.39 35.49 1.85
4630 4875 5.351465 ACGATTCACCTTACATTTACTGCAG 59.649 40.000 13.48 13.48 0.00 4.41
4632 4877 5.350365 TGACGATTCACCTTACATTTACTGC 59.650 40.000 0.00 0.00 0.00 4.40
4636 4881 6.706716 TGTGTTGACGATTCACCTTACATTTA 59.293 34.615 0.00 0.00 0.00 1.40
4646 4891 4.688879 TCATAGGTTGTGTTGACGATTCAC 59.311 41.667 0.00 0.00 0.00 3.18
4696 4941 6.156519 GTGGACACCCTTAACATCAAAATTC 58.843 40.000 0.00 0.00 0.00 2.17
4697 4942 5.600484 TGTGGACACCCTTAACATCAAAATT 59.400 36.000 0.00 0.00 0.00 1.82
4701 4947 3.497763 CCTGTGGACACCCTTAACATCAA 60.498 47.826 0.00 0.00 0.00 2.57
4708 4954 2.554344 GCAAATCCTGTGGACACCCTTA 60.554 50.000 0.00 0.00 32.98 2.69
4710 4956 0.251341 GCAAATCCTGTGGACACCCT 60.251 55.000 0.00 0.00 32.98 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.