Multiple sequence alignment - TraesCS5A01G330000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G330000 chr5A 100.000 3923 0 0 1 3923 539100809 539104731 0.000000e+00 7245.0
1 TraesCS5A01G330000 chr5A 98.693 153 2 0 3406 3558 414939540 414939692 4.990000e-69 272.0
2 TraesCS5A01G330000 chr5D 92.098 3455 140 44 1 3374 425085310 425088712 0.000000e+00 4745.0
3 TraesCS5A01G330000 chr5D 84.586 266 26 10 891 1151 448296598 448296853 2.340000e-62 250.0
4 TraesCS5A01G330000 chr5D 94.286 35 2 0 3560 3594 425088718 425088752 2.000000e-03 54.7
5 TraesCS5A01G330000 chr5B 90.898 3274 121 49 245 3410 514287579 514290783 0.000000e+00 4231.0
6 TraesCS5A01G330000 chr5B 85.838 579 55 9 914 1482 415393472 415394033 1.210000e-164 590.0
7 TraesCS5A01G330000 chr5B 100.000 29 0 0 2610 2638 514290870 514290898 2.000000e-03 54.7
8 TraesCS5A01G330000 chr7A 87.993 583 52 9 911 1482 617958015 617958590 0.000000e+00 673.0
9 TraesCS5A01G330000 chr7A 85.772 246 19 10 876 1115 682820844 682820609 3.030000e-61 246.0
10 TraesCS5A01G330000 chr3B 87.780 581 52 5 914 1482 782859207 782859780 0.000000e+00 662.0
11 TraesCS5A01G330000 chr3B 98.667 150 2 0 3408 3557 436759493 436759642 2.320000e-67 267.0
12 TraesCS5A01G330000 chr2A 89.237 511 40 6 981 1482 3343505 3343001 3.330000e-175 625.0
13 TraesCS5A01G330000 chr2A 98.052 154 3 0 3406 3559 126481866 126482019 6.460000e-68 268.0
14 TraesCS5A01G330000 chr2A 84.959 246 21 10 876 1115 660987775 660988010 6.550000e-58 235.0
15 TraesCS5A01G330000 chr4A 100.000 150 0 0 3410 3559 356605722 356605871 1.070000e-70 278.0
16 TraesCS5A01G330000 chr4A 88.393 224 13 7 896 1115 187592400 187592614 1.400000e-64 257.0
17 TraesCS5A01G330000 chr3A 100.000 150 0 0 3410 3559 60005168 60005317 1.070000e-70 278.0
18 TraesCS5A01G330000 chr7D 100.000 148 0 0 3410 3557 2408003 2407856 1.390000e-69 274.0
19 TraesCS5A01G330000 chr1B 98.026 152 3 0 3410 3561 670612189 670612340 8.360000e-67 265.0
20 TraesCS5A01G330000 chr1B 100.000 31 0 0 1452 1482 627842917 627842947 1.520000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G330000 chr5A 539100809 539104731 3922 False 7245.00 7245 100.000 1 3923 1 chr5A.!!$F2 3922
1 TraesCS5A01G330000 chr5D 425085310 425088752 3442 False 2399.85 4745 93.192 1 3594 2 chr5D.!!$F2 3593
2 TraesCS5A01G330000 chr5B 514287579 514290898 3319 False 2142.85 4231 95.449 245 3410 2 chr5B.!!$F2 3165
3 TraesCS5A01G330000 chr5B 415393472 415394033 561 False 590.00 590 85.838 914 1482 1 chr5B.!!$F1 568
4 TraesCS5A01G330000 chr7A 617958015 617958590 575 False 673.00 673 87.993 911 1482 1 chr7A.!!$F1 571
5 TraesCS5A01G330000 chr3B 782859207 782859780 573 False 662.00 662 87.780 914 1482 1 chr3B.!!$F2 568
6 TraesCS5A01G330000 chr2A 3343001 3343505 504 True 625.00 625 89.237 981 1482 1 chr2A.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 703 0.038526 AACGACACGCGAAGGAGAAT 60.039 50.0 15.93 0.0 44.57 2.40 F
1771 1889 0.107312 TCGTAAGTCTCTCCCCCTCG 60.107 60.0 0.00 0.0 39.48 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2506 2639 1.203563 GATCGTGATGCATCTGCGC 59.796 57.895 26.32 14.58 45.83 6.09 R
3686 3865 0.031721 GTTGTCGTCGTCCTGGTTCT 59.968 55.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.414700 GAACGGCACAGGTGAGCG 61.415 66.667 3.10 0.00 32.29 5.03
36 37 1.737696 CGGCACAGGTGAGCGTAATTA 60.738 52.381 3.10 0.00 32.29 1.40
46 47 7.227116 ACAGGTGAGCGTAATTAAAGTTTGTAA 59.773 33.333 0.00 0.00 0.00 2.41
48 49 7.227116 AGGTGAGCGTAATTAAAGTTTGTAACA 59.773 33.333 0.00 0.00 0.00 2.41
86 87 0.673644 AATGCCCTTTCCGTCTCACG 60.674 55.000 0.00 0.00 42.11 4.35
93 94 1.827315 TTTCCGTCTCACGCGCTTTG 61.827 55.000 5.73 2.10 40.91 2.77
94 95 2.964438 TTCCGTCTCACGCGCTTTGT 62.964 55.000 5.73 0.00 40.91 2.83
97 98 3.345808 TCTCACGCGCTTTGTGCC 61.346 61.111 5.73 0.00 38.78 5.01
98 99 4.724697 CTCACGCGCTTTGTGCCG 62.725 66.667 5.73 0.00 39.83 5.69
108 109 1.238439 CTTTGTGCCGGTCAGTCAAT 58.762 50.000 1.90 0.00 0.00 2.57
110 111 0.396435 TTGTGCCGGTCAGTCAATCT 59.604 50.000 1.90 0.00 0.00 2.40
136 137 1.332904 CGAATCCGCAAGCGTTATTCC 60.333 52.381 22.66 12.38 36.98 3.01
192 193 1.873863 TCAGTACGCCTGACACTCG 59.126 57.895 1.50 0.00 45.34 4.18
201 202 0.244721 CCTGACACTCGTGCTCATCA 59.755 55.000 0.00 0.00 0.00 3.07
211 212 0.731417 GTGCTCATCACCACATCAGC 59.269 55.000 0.00 0.00 39.79 4.26
235 236 1.961277 CCTCCTCACGGTTGTGTGC 60.961 63.158 0.00 0.00 46.49 4.57
240 241 1.403116 CCTCACGGTTGTGTGCGTATA 60.403 52.381 0.00 0.00 46.49 1.47
282 283 2.882927 GCACAATCATGCATCATGGT 57.117 45.000 0.00 0.00 45.39 3.55
284 285 2.857104 GCACAATCATGCATCATGGTCG 60.857 50.000 0.00 0.00 45.39 4.79
292 293 0.379669 GCATCATGGTCGCTTTCAGG 59.620 55.000 0.00 0.00 0.00 3.86
310 311 1.463553 GGGGCAAAGAACACCCACTG 61.464 60.000 0.00 0.00 46.21 3.66
327 328 3.319755 CACTGAAACATCCATTTGCCAC 58.680 45.455 0.00 0.00 0.00 5.01
328 329 3.006110 CACTGAAACATCCATTTGCCACT 59.994 43.478 0.00 0.00 0.00 4.00
352 353 1.026182 TACAGCTTGGCATGCGGAAG 61.026 55.000 27.00 19.03 35.28 3.46
355 356 2.334946 GCTTGGCATGCGGAAGACA 61.335 57.895 24.80 9.63 0.00 3.41
444 445 1.574702 GCCAACAGTACGAGGCCAAC 61.575 60.000 5.01 0.00 41.25 3.77
613 621 1.308998 CGAGGCGGCCTATGATTTTT 58.691 50.000 23.92 0.00 31.76 1.94
674 703 0.038526 AACGACACGCGAAGGAGAAT 60.039 50.000 15.93 0.00 44.57 2.40
894 937 3.327404 TCCCTCCCCCAAAGCGTC 61.327 66.667 0.00 0.00 0.00 5.19
1149 1204 1.901085 GCACTCCGACTCCTTCCAT 59.099 57.895 0.00 0.00 0.00 3.41
1152 1207 0.898320 ACTCCGACTCCTTCCATGTG 59.102 55.000 0.00 0.00 0.00 3.21
1155 1210 1.599047 CGACTCCTTCCATGTGGCT 59.401 57.895 0.00 0.00 34.44 4.75
1248 1335 5.598005 TGTTCTGTCTGGGATTTGAATTTGT 59.402 36.000 0.00 0.00 0.00 2.83
1251 1338 5.598005 TCTGTCTGGGATTTGAATTTGTTGT 59.402 36.000 0.00 0.00 0.00 3.32
1317 1415 3.009714 AAGGACCCGGAGAAGGCC 61.010 66.667 0.73 0.00 0.00 5.19
1320 1418 2.506472 GACCCGGAGAAGGCCATC 59.494 66.667 5.01 1.19 0.00 3.51
1513 1611 0.179108 CCTCTACAAGGTACTGCGCC 60.179 60.000 4.18 0.00 40.86 6.53
1514 1612 0.530744 CTCTACAAGGTACTGCGCCA 59.469 55.000 4.18 0.00 40.86 5.69
1516 1614 0.739813 CTACAAGGTACTGCGCCACC 60.740 60.000 4.18 10.08 40.86 4.61
1517 1615 2.175035 TACAAGGTACTGCGCCACCC 62.175 60.000 16.66 6.82 40.86 4.61
1518 1616 4.029809 AAGGTACTGCGCCACCCC 62.030 66.667 16.66 7.15 40.86 4.95
1520 1618 4.029809 GGTACTGCGCCACCCCTT 62.030 66.667 4.18 0.00 0.00 3.95
1586 1689 9.432982 TGGGATGGCTAACTCAATATTTTAATT 57.567 29.630 0.00 0.00 0.00 1.40
1591 1694 9.391006 TGGCTAACTCAATATTTTAATTCGACT 57.609 29.630 0.00 0.00 0.00 4.18
1768 1886 0.258194 TCCTCGTAAGTCTCTCCCCC 59.742 60.000 0.00 0.00 39.48 5.40
1771 1889 0.107312 TCGTAAGTCTCTCCCCCTCG 60.107 60.000 0.00 0.00 39.48 4.63
1800 1918 8.090214 TCAAAATTTCAAATCCAGTTCAGATCC 58.910 33.333 0.00 0.00 0.00 3.36
1838 1962 5.751243 ATGGTAAGAATCAATGGCGTAAC 57.249 39.130 0.00 0.00 0.00 2.50
1847 1974 7.927048 AGAATCAATGGCGTAACTAATTAACC 58.073 34.615 0.00 0.00 0.00 2.85
1850 1977 2.903798 TGGCGTAACTAATTAACCCGG 58.096 47.619 0.00 0.00 0.00 5.73
2361 2488 2.439156 GGCAAGAAGATGGCCGCT 60.439 61.111 0.00 0.00 39.79 5.52
2366 2493 2.124983 GAAGATGGCCGCTCTGCA 60.125 61.111 8.32 0.00 0.00 4.41
2367 2494 2.124819 AAGATGGCCGCTCTGCAG 60.125 61.111 7.63 7.63 0.00 4.41
2368 2495 4.853050 AGATGGCCGCTCTGCAGC 62.853 66.667 9.47 0.00 42.96 5.25
2787 2923 1.606350 CCGACGACGAGAACTGCAAC 61.606 60.000 9.28 0.00 42.66 4.17
2788 2924 0.933047 CGACGACGAGAACTGCAACA 60.933 55.000 0.00 0.00 42.66 3.33
2789 2925 0.503117 GACGACGAGAACTGCAACAC 59.497 55.000 0.00 0.00 0.00 3.32
2790 2926 0.874607 ACGACGAGAACTGCAACACC 60.875 55.000 0.00 0.00 0.00 4.16
2791 2927 1.853319 GACGAGAACTGCAACACCG 59.147 57.895 0.00 0.00 0.00 4.94
2792 2928 1.557443 GACGAGAACTGCAACACCGG 61.557 60.000 0.00 0.00 0.00 5.28
2793 2929 2.946762 GAGAACTGCAACACCGGC 59.053 61.111 0.00 0.00 0.00 6.13
2794 2930 1.891919 GAGAACTGCAACACCGGCA 60.892 57.895 0.00 0.00 39.32 5.69
2795 2931 1.444119 GAGAACTGCAACACCGGCAA 61.444 55.000 0.00 0.00 41.39 4.52
3111 3255 0.963962 TTACCGCTCGACTTGGTTCT 59.036 50.000 4.01 0.00 37.20 3.01
3112 3256 0.963962 TACCGCTCGACTTGGTTCTT 59.036 50.000 4.01 0.00 37.20 2.52
3113 3257 0.106149 ACCGCTCGACTTGGTTCTTT 59.894 50.000 0.00 0.00 29.87 2.52
3192 3336 6.014327 ACAGTCAAAATAACATTGGCAAGGAT 60.014 34.615 19.84 9.59 34.88 3.24
3386 3558 6.260377 TGAAATTTAGCTTGATTGCATCTCG 58.740 36.000 0.00 0.00 34.99 4.04
3406 3578 2.474359 CGCTTTTGCTCTGGATATCGAG 59.526 50.000 8.36 8.36 44.80 4.04
3407 3579 3.722147 GCTTTTGCTCTGGATATCGAGA 58.278 45.455 15.67 15.67 43.35 4.04
3408 3580 4.314121 GCTTTTGCTCTGGATATCGAGAT 58.686 43.478 16.69 0.00 43.35 2.75
3409 3581 4.754114 GCTTTTGCTCTGGATATCGAGATT 59.246 41.667 16.69 0.00 43.35 2.40
3410 3582 5.928839 GCTTTTGCTCTGGATATCGAGATTA 59.071 40.000 16.69 7.29 43.35 1.75
3411 3583 6.090628 GCTTTTGCTCTGGATATCGAGATTAG 59.909 42.308 16.69 7.77 43.35 1.73
3412 3584 4.710423 TGCTCTGGATATCGAGATTAGC 57.290 45.455 16.69 16.28 30.40 3.09
3413 3585 4.082125 TGCTCTGGATATCGAGATTAGCA 58.918 43.478 19.50 19.50 30.97 3.49
3414 3586 4.082517 TGCTCTGGATATCGAGATTAGCAC 60.083 45.833 19.50 7.90 29.40 4.40
3415 3587 4.157656 GCTCTGGATATCGAGATTAGCACT 59.842 45.833 16.69 0.00 30.40 4.40
3416 3588 5.635417 TCTGGATATCGAGATTAGCACTG 57.365 43.478 12.92 0.00 0.00 3.66
3417 3589 4.082517 TCTGGATATCGAGATTAGCACTGC 60.083 45.833 12.92 0.00 0.00 4.40
3418 3590 3.829026 TGGATATCGAGATTAGCACTGCT 59.171 43.478 8.95 8.95 43.41 4.24
3419 3591 5.010282 TGGATATCGAGATTAGCACTGCTA 58.990 41.667 6.66 6.66 40.44 3.49
3420 3592 5.654209 TGGATATCGAGATTAGCACTGCTAT 59.346 40.000 11.61 2.61 41.01 2.97
3421 3593 6.828785 TGGATATCGAGATTAGCACTGCTATA 59.171 38.462 11.61 1.18 41.01 1.31
3422 3594 7.136119 GGATATCGAGATTAGCACTGCTATAC 58.864 42.308 11.61 8.77 41.01 1.47
3423 3595 5.966742 ATCGAGATTAGCACTGCTATACA 57.033 39.130 11.61 0.00 41.01 2.29
3424 3596 5.109662 TCGAGATTAGCACTGCTATACAC 57.890 43.478 11.61 6.89 41.01 2.90
3425 3597 4.578928 TCGAGATTAGCACTGCTATACACA 59.421 41.667 11.61 0.00 41.01 3.72
3426 3598 4.677378 CGAGATTAGCACTGCTATACACAC 59.323 45.833 11.61 2.11 41.01 3.82
3427 3599 4.611943 AGATTAGCACTGCTATACACACG 58.388 43.478 11.61 0.00 41.01 4.49
3428 3600 4.338400 AGATTAGCACTGCTATACACACGA 59.662 41.667 11.61 0.00 41.01 4.35
3429 3601 4.649088 TTAGCACTGCTATACACACGAT 57.351 40.909 11.61 0.00 41.01 3.73
3430 3602 2.814269 AGCACTGCTATACACACGATG 58.186 47.619 0.21 0.00 36.99 3.84
3431 3603 1.258982 GCACTGCTATACACACGATGC 59.741 52.381 0.00 0.00 0.00 3.91
3432 3604 2.814269 CACTGCTATACACACGATGCT 58.186 47.619 0.00 0.00 0.00 3.79
3433 3605 3.795488 GCACTGCTATACACACGATGCTA 60.795 47.826 0.00 0.00 0.00 3.49
3434 3606 4.359706 CACTGCTATACACACGATGCTAA 58.640 43.478 0.00 0.00 0.00 3.09
3435 3607 4.984785 CACTGCTATACACACGATGCTAAT 59.015 41.667 0.00 0.00 0.00 1.73
3436 3608 6.149633 CACTGCTATACACACGATGCTAATA 58.850 40.000 0.00 0.00 0.00 0.98
3437 3609 6.306596 CACTGCTATACACACGATGCTAATAG 59.693 42.308 0.00 0.00 0.00 1.73
3438 3610 5.161358 TGCTATACACACGATGCTAATAGC 58.839 41.667 5.12 5.12 41.16 2.97
3439 3611 4.563184 GCTATACACACGATGCTAATAGCC 59.437 45.833 10.06 0.00 41.51 3.93
3440 3612 1.852942 ACACACGATGCTAATAGCCG 58.147 50.000 10.06 9.40 41.51 5.52
3441 3613 1.407618 ACACACGATGCTAATAGCCGA 59.592 47.619 15.69 0.00 41.51 5.54
3442 3614 2.035961 ACACACGATGCTAATAGCCGAT 59.964 45.455 15.69 1.74 41.51 4.18
3443 3615 3.059884 CACACGATGCTAATAGCCGATT 58.940 45.455 15.69 1.90 41.51 3.34
3444 3616 3.494626 CACACGATGCTAATAGCCGATTT 59.505 43.478 15.69 0.00 41.51 2.17
3445 3617 3.494626 ACACGATGCTAATAGCCGATTTG 59.505 43.478 15.69 7.79 41.51 2.32
3446 3618 3.494626 CACGATGCTAATAGCCGATTTGT 59.505 43.478 15.69 4.01 41.51 2.83
3447 3619 3.494626 ACGATGCTAATAGCCGATTTGTG 59.505 43.478 15.69 0.00 41.51 3.33
3448 3620 3.120546 CGATGCTAATAGCCGATTTGTGG 60.121 47.826 10.06 0.00 41.51 4.17
3449 3621 3.552132 TGCTAATAGCCGATTTGTGGA 57.448 42.857 10.06 0.00 41.51 4.02
3450 3622 3.202906 TGCTAATAGCCGATTTGTGGAC 58.797 45.455 10.06 0.00 41.51 4.02
3451 3623 2.221055 GCTAATAGCCGATTTGTGGACG 59.779 50.000 0.00 0.00 34.48 4.79
3452 3624 2.684001 AATAGCCGATTTGTGGACGA 57.316 45.000 0.00 0.00 0.00 4.20
3453 3625 1.935933 ATAGCCGATTTGTGGACGAC 58.064 50.000 0.00 0.00 0.00 4.34
3454 3626 0.457166 TAGCCGATTTGTGGACGACG 60.457 55.000 0.00 0.00 0.00 5.12
3455 3627 2.776072 CCGATTTGTGGACGACGC 59.224 61.111 0.00 0.00 0.00 5.19
3456 3628 1.736645 CCGATTTGTGGACGACGCT 60.737 57.895 0.00 0.00 0.00 5.07
3457 3629 1.416049 CGATTTGTGGACGACGCTG 59.584 57.895 0.00 0.00 0.00 5.18
3458 3630 1.787847 GATTTGTGGACGACGCTGG 59.212 57.895 0.00 0.00 0.00 4.85
3459 3631 0.669318 GATTTGTGGACGACGCTGGA 60.669 55.000 0.00 0.00 0.00 3.86
3460 3632 0.670546 ATTTGTGGACGACGCTGGAG 60.671 55.000 0.00 0.00 0.00 3.86
3461 3633 1.740332 TTTGTGGACGACGCTGGAGA 61.740 55.000 0.00 0.00 0.00 3.71
3462 3634 1.532604 TTGTGGACGACGCTGGAGAT 61.533 55.000 0.00 0.00 0.00 2.75
3463 3635 1.226717 GTGGACGACGCTGGAGATC 60.227 63.158 0.00 0.00 0.00 2.75
3464 3636 1.677633 TGGACGACGCTGGAGATCA 60.678 57.895 0.00 0.00 0.00 2.92
3465 3637 1.226717 GGACGACGCTGGAGATCAC 60.227 63.158 0.00 0.00 0.00 3.06
3466 3638 1.506718 GACGACGCTGGAGATCACA 59.493 57.895 0.00 0.00 0.00 3.58
3467 3639 0.798771 GACGACGCTGGAGATCACAC 60.799 60.000 0.00 0.00 0.00 3.82
3468 3640 1.517257 CGACGCTGGAGATCACACC 60.517 63.158 0.00 0.00 0.00 4.16
3469 3641 1.591703 GACGCTGGAGATCACACCA 59.408 57.895 0.00 0.72 35.61 4.17
3470 3642 0.176680 GACGCTGGAGATCACACCAT 59.823 55.000 0.00 0.00 36.30 3.55
3471 3643 1.409064 GACGCTGGAGATCACACCATA 59.591 52.381 0.00 0.00 36.30 2.74
3472 3644 1.137086 ACGCTGGAGATCACACCATAC 59.863 52.381 0.00 0.00 36.30 2.39
3473 3645 1.858091 GCTGGAGATCACACCATACG 58.142 55.000 0.00 0.00 36.30 3.06
3474 3646 1.137086 GCTGGAGATCACACCATACGT 59.863 52.381 0.00 0.00 36.30 3.57
3475 3647 2.799917 GCTGGAGATCACACCATACGTC 60.800 54.545 0.00 0.00 36.30 4.34
3476 3648 1.404035 TGGAGATCACACCATACGTCG 59.596 52.381 0.00 0.00 32.20 5.12
3477 3649 1.478137 GAGATCACACCATACGTCGC 58.522 55.000 0.00 0.00 0.00 5.19
3478 3650 0.815095 AGATCACACCATACGTCGCA 59.185 50.000 0.00 0.00 0.00 5.10
3479 3651 0.921347 GATCACACCATACGTCGCAC 59.079 55.000 0.00 0.00 0.00 5.34
3510 3682 3.168773 GGTGCACCGTTGGATATGT 57.831 52.632 22.49 0.00 0.00 2.29
3511 3683 1.014352 GGTGCACCGTTGGATATGTC 58.986 55.000 22.49 0.00 0.00 3.06
3512 3684 0.650512 GTGCACCGTTGGATATGTCG 59.349 55.000 5.22 0.00 0.00 4.35
3513 3685 0.248012 TGCACCGTTGGATATGTCGT 59.752 50.000 0.00 0.00 0.00 4.34
3514 3686 1.338294 TGCACCGTTGGATATGTCGTT 60.338 47.619 0.00 0.00 0.00 3.85
3515 3687 1.326548 GCACCGTTGGATATGTCGTTC 59.673 52.381 0.00 0.00 0.00 3.95
3516 3688 1.586578 CACCGTTGGATATGTCGTTCG 59.413 52.381 0.00 0.00 0.00 3.95
3517 3689 1.205657 CCGTTGGATATGTCGTTCGG 58.794 55.000 4.26 4.26 0.00 4.30
3518 3690 0.575390 CGTTGGATATGTCGTTCGGC 59.425 55.000 0.00 0.00 0.00 5.54
3519 3691 1.801395 CGTTGGATATGTCGTTCGGCT 60.801 52.381 0.00 0.00 0.00 5.52
3520 3692 1.593006 GTTGGATATGTCGTTCGGCTG 59.407 52.381 0.00 0.00 0.00 4.85
3521 3693 0.821517 TGGATATGTCGTTCGGCTGT 59.178 50.000 0.00 0.00 0.00 4.40
3522 3694 2.025898 TGGATATGTCGTTCGGCTGTA 58.974 47.619 0.00 0.00 0.00 2.74
3523 3695 2.626266 TGGATATGTCGTTCGGCTGTAT 59.374 45.455 0.00 0.00 0.00 2.29
3524 3696 2.987149 GGATATGTCGTTCGGCTGTATG 59.013 50.000 0.00 0.00 0.00 2.39
3525 3697 3.552273 GGATATGTCGTTCGGCTGTATGT 60.552 47.826 0.00 0.00 0.00 2.29
3526 3698 1.922570 ATGTCGTTCGGCTGTATGTC 58.077 50.000 0.00 0.00 0.00 3.06
3527 3699 0.455464 TGTCGTTCGGCTGTATGTCG 60.455 55.000 0.00 0.00 46.47 4.35
3528 3700 0.455633 GTCGTTCGGCTGTATGTCGT 60.456 55.000 0.00 0.00 45.15 4.34
3529 3701 0.179181 TCGTTCGGCTGTATGTCGTC 60.179 55.000 0.00 0.00 45.15 4.20
3530 3702 0.179171 CGTTCGGCTGTATGTCGTCT 60.179 55.000 0.00 0.00 45.15 4.18
3531 3703 1.269166 GTTCGGCTGTATGTCGTCTG 58.731 55.000 0.00 0.00 45.15 3.51
3532 3704 0.885879 TTCGGCTGTATGTCGTCTGT 59.114 50.000 0.00 0.00 45.15 3.41
3533 3705 0.170339 TCGGCTGTATGTCGTCTGTG 59.830 55.000 0.00 0.00 45.15 3.66
3534 3706 1.413767 CGGCTGTATGTCGTCTGTGC 61.414 60.000 0.00 0.00 39.21 4.57
3535 3707 0.389817 GGCTGTATGTCGTCTGTGCA 60.390 55.000 0.00 0.00 0.00 4.57
3536 3708 0.994995 GCTGTATGTCGTCTGTGCAG 59.005 55.000 0.00 0.00 0.00 4.41
3537 3709 1.670087 GCTGTATGTCGTCTGTGCAGT 60.670 52.381 0.00 0.00 0.00 4.40
3538 3710 2.415491 GCTGTATGTCGTCTGTGCAGTA 60.415 50.000 0.00 0.00 0.00 2.74
3539 3711 3.735208 GCTGTATGTCGTCTGTGCAGTAT 60.735 47.826 0.00 0.00 0.00 2.12
3540 3712 4.028852 TGTATGTCGTCTGTGCAGTATC 57.971 45.455 0.00 0.00 0.00 2.24
3541 3713 2.194800 ATGTCGTCTGTGCAGTATCG 57.805 50.000 0.00 4.11 0.00 2.92
3542 3714 0.170339 TGTCGTCTGTGCAGTATCGG 59.830 55.000 0.00 0.00 0.00 4.18
3543 3715 1.138883 TCGTCTGTGCAGTATCGGC 59.861 57.895 0.00 0.00 0.00 5.54
3544 3716 1.139734 CGTCTGTGCAGTATCGGCT 59.860 57.895 0.00 0.00 0.00 5.52
3545 3717 1.142185 CGTCTGTGCAGTATCGGCTG 61.142 60.000 0.00 0.00 39.37 4.85
3563 3735 1.067693 TGCACAGCAGTTTCGTATCG 58.932 50.000 0.00 0.00 33.32 2.92
3564 3736 1.336424 TGCACAGCAGTTTCGTATCGA 60.336 47.619 0.00 0.00 33.32 3.59
3565 3737 1.321743 GCACAGCAGTTTCGTATCGAG 59.678 52.381 0.00 0.00 37.14 4.04
3600 3772 1.125021 GTTCTGTTCATCAGCGTCACG 59.875 52.381 0.00 0.00 43.32 4.35
3608 3780 4.039357 CAGCGTCACGACCGAGGT 62.039 66.667 0.00 0.00 0.00 3.85
3614 3786 2.432628 CACGACCGAGGTCCAAGC 60.433 66.667 15.88 0.00 41.76 4.01
3617 3789 2.579738 GACCGAGGTCCAAGCTCC 59.420 66.667 11.07 0.00 39.44 4.70
3618 3790 3.003763 ACCGAGGTCCAAGCTCCC 61.004 66.667 0.00 0.00 39.44 4.30
3635 3811 1.834822 CCCCTTTTTGGTGGGCGAA 60.835 57.895 0.00 0.00 42.03 4.70
3636 3812 1.665442 CCCTTTTTGGTGGGCGAAG 59.335 57.895 0.00 0.00 36.61 3.79
3639 3815 1.318576 CTTTTTGGTGGGCGAAGTCT 58.681 50.000 0.00 0.00 0.00 3.24
3640 3816 1.001378 CTTTTTGGTGGGCGAAGTCTG 60.001 52.381 0.00 0.00 0.00 3.51
3641 3817 0.106918 TTTTGGTGGGCGAAGTCTGT 60.107 50.000 0.00 0.00 0.00 3.41
3642 3818 0.759959 TTTGGTGGGCGAAGTCTGTA 59.240 50.000 0.00 0.00 0.00 2.74
3645 3821 1.141254 TGGTGGGCGAAGTCTGTAAAA 59.859 47.619 0.00 0.00 0.00 1.52
3646 3822 2.223745 GGTGGGCGAAGTCTGTAAAAA 58.776 47.619 0.00 0.00 0.00 1.94
3681 3860 1.601759 GAGCAGCAACAAGGAGGCA 60.602 57.895 0.00 0.00 0.00 4.75
3685 3864 0.535780 CAGCAACAAGGAGGCAGACA 60.536 55.000 0.00 0.00 0.00 3.41
3686 3865 0.183492 AGCAACAAGGAGGCAGACAA 59.817 50.000 0.00 0.00 0.00 3.18
3687 3866 0.595095 GCAACAAGGAGGCAGACAAG 59.405 55.000 0.00 0.00 0.00 3.16
3688 3867 1.815408 GCAACAAGGAGGCAGACAAGA 60.815 52.381 0.00 0.00 0.00 3.02
3689 3868 2.575532 CAACAAGGAGGCAGACAAGAA 58.424 47.619 0.00 0.00 0.00 2.52
3690 3869 2.262423 ACAAGGAGGCAGACAAGAAC 57.738 50.000 0.00 0.00 0.00 3.01
3691 3870 1.202818 ACAAGGAGGCAGACAAGAACC 60.203 52.381 0.00 0.00 0.00 3.62
3692 3871 1.140312 AAGGAGGCAGACAAGAACCA 58.860 50.000 0.00 0.00 0.00 3.67
3693 3872 0.689623 AGGAGGCAGACAAGAACCAG 59.310 55.000 0.00 0.00 0.00 4.00
3694 3873 0.322008 GGAGGCAGACAAGAACCAGG 60.322 60.000 0.00 0.00 0.00 4.45
3695 3874 0.687354 GAGGCAGACAAGAACCAGGA 59.313 55.000 0.00 0.00 0.00 3.86
3696 3875 0.398318 AGGCAGACAAGAACCAGGAC 59.602 55.000 0.00 0.00 0.00 3.85
3697 3876 0.951040 GGCAGACAAGAACCAGGACG 60.951 60.000 0.00 0.00 0.00 4.79
3698 3877 0.033504 GCAGACAAGAACCAGGACGA 59.966 55.000 0.00 0.00 0.00 4.20
3699 3878 1.784525 CAGACAAGAACCAGGACGAC 58.215 55.000 0.00 0.00 0.00 4.34
3700 3879 0.314302 AGACAAGAACCAGGACGACG 59.686 55.000 0.00 0.00 0.00 5.12
3701 3880 0.313043 GACAAGAACCAGGACGACGA 59.687 55.000 0.00 0.00 0.00 4.20
3702 3881 0.031721 ACAAGAACCAGGACGACGAC 59.968 55.000 0.00 0.00 0.00 4.34
3703 3882 0.031585 CAAGAACCAGGACGACGACA 59.968 55.000 0.00 0.00 0.00 4.35
3704 3883 0.748450 AAGAACCAGGACGACGACAA 59.252 50.000 0.00 0.00 0.00 3.18
3705 3884 0.031721 AGAACCAGGACGACGACAAC 59.968 55.000 0.00 0.00 0.00 3.32
3706 3885 0.249155 GAACCAGGACGACGACAACA 60.249 55.000 0.00 0.00 0.00 3.33
3707 3886 0.176219 AACCAGGACGACGACAACAA 59.824 50.000 0.00 0.00 0.00 2.83
3708 3887 0.529119 ACCAGGACGACGACAACAAC 60.529 55.000 0.00 0.00 0.00 3.32
3709 3888 0.528901 CCAGGACGACGACAACAACA 60.529 55.000 0.00 0.00 0.00 3.33
3710 3889 1.282817 CAGGACGACGACAACAACAA 58.717 50.000 0.00 0.00 0.00 2.83
3711 3890 1.005347 CAGGACGACGACAACAACAAC 60.005 52.381 0.00 0.00 0.00 3.32
3712 3891 0.043652 GGACGACGACAACAACAACG 60.044 55.000 0.00 0.00 0.00 4.10
3713 3892 0.043652 GACGACGACAACAACAACGG 60.044 55.000 0.00 0.00 0.00 4.44
3714 3893 1.367195 CGACGACAACAACAACGGC 60.367 57.895 0.00 0.00 0.00 5.68
3715 3894 1.716760 GACGACAACAACAACGGCA 59.283 52.632 0.00 0.00 33.73 5.69
3716 3895 0.315869 GACGACAACAACAACGGCAG 60.316 55.000 0.00 0.00 33.73 4.85
3717 3896 1.010125 CGACAACAACAACGGCAGG 60.010 57.895 0.00 0.00 0.00 4.85
3718 3897 1.433053 CGACAACAACAACGGCAGGA 61.433 55.000 0.00 0.00 0.00 3.86
3719 3898 0.307760 GACAACAACAACGGCAGGAG 59.692 55.000 0.00 0.00 0.00 3.69
3720 3899 0.393808 ACAACAACAACGGCAGGAGT 60.394 50.000 0.00 0.00 0.00 3.85
3721 3900 0.307760 CAACAACAACGGCAGGAGTC 59.692 55.000 0.00 0.00 0.00 3.36
3722 3901 0.180406 AACAACAACGGCAGGAGTCT 59.820 50.000 0.00 0.00 0.00 3.24
3723 3902 0.180406 ACAACAACGGCAGGAGTCTT 59.820 50.000 0.00 0.00 0.00 3.01
3724 3903 0.588252 CAACAACGGCAGGAGTCTTG 59.412 55.000 0.00 0.00 0.00 3.02
3725 3904 0.535102 AACAACGGCAGGAGTCTTGG 60.535 55.000 4.22 0.00 0.00 3.61
3726 3905 1.672356 CAACGGCAGGAGTCTTGGG 60.672 63.158 4.22 0.00 0.00 4.12
3727 3906 1.841556 AACGGCAGGAGTCTTGGGA 60.842 57.895 4.22 0.00 0.00 4.37
3728 3907 2.113243 AACGGCAGGAGTCTTGGGAC 62.113 60.000 4.22 0.00 42.41 4.46
3729 3908 2.266055 GGCAGGAGTCTTGGGACG 59.734 66.667 4.22 0.00 46.29 4.79
3730 3909 2.435059 GCAGGAGTCTTGGGACGC 60.435 66.667 4.22 0.00 46.29 5.19
3734 3913 4.522971 GAGTCTTGGGACGCCATC 57.477 61.111 0.00 0.00 46.29 3.51
3743 3922 2.390427 GGACGCCATCCCTAAAACG 58.610 57.895 0.00 0.00 42.46 3.60
3744 3923 0.108041 GGACGCCATCCCTAAAACGA 60.108 55.000 0.00 0.00 42.46 3.85
3745 3924 1.676615 GGACGCCATCCCTAAAACGAA 60.677 52.381 0.00 0.00 42.46 3.85
3746 3925 1.395954 GACGCCATCCCTAAAACGAAC 59.604 52.381 0.00 0.00 0.00 3.95
3747 3926 1.270947 ACGCCATCCCTAAAACGAACA 60.271 47.619 0.00 0.00 0.00 3.18
3748 3927 2.014128 CGCCATCCCTAAAACGAACAT 58.986 47.619 0.00 0.00 0.00 2.71
3749 3928 3.199677 CGCCATCCCTAAAACGAACATA 58.800 45.455 0.00 0.00 0.00 2.29
3750 3929 3.813166 CGCCATCCCTAAAACGAACATAT 59.187 43.478 0.00 0.00 0.00 1.78
3751 3930 4.274950 CGCCATCCCTAAAACGAACATATT 59.725 41.667 0.00 0.00 0.00 1.28
3752 3931 5.467399 CGCCATCCCTAAAACGAACATATTA 59.533 40.000 0.00 0.00 0.00 0.98
3753 3932 6.148811 CGCCATCCCTAAAACGAACATATTAT 59.851 38.462 0.00 0.00 0.00 1.28
3754 3933 7.308348 CGCCATCCCTAAAACGAACATATTATT 60.308 37.037 0.00 0.00 0.00 1.40
3755 3934 8.357402 GCCATCCCTAAAACGAACATATTATTT 58.643 33.333 0.00 0.00 0.00 1.40
3767 3946 9.635520 ACGAACATATTATTTATCTTAGGGACG 57.364 33.333 0.00 0.00 0.00 4.79
3768 3947 8.592998 CGAACATATTATTTATCTTAGGGACGC 58.407 37.037 0.00 0.00 0.00 5.19
3769 3948 8.788325 AACATATTATTTATCTTAGGGACGCC 57.212 34.615 0.00 0.00 0.00 5.68
3770 3949 7.913789 ACATATTATTTATCTTAGGGACGCCA 58.086 34.615 0.00 0.00 0.00 5.69
3771 3950 8.548877 ACATATTATTTATCTTAGGGACGCCAT 58.451 33.333 0.00 0.00 0.00 4.40
3772 3951 9.046296 CATATTATTTATCTTAGGGACGCCATC 57.954 37.037 0.00 0.00 0.00 3.51
3782 3961 1.954927 GGACGCCATCCCTAAGAAAG 58.045 55.000 0.00 0.00 42.46 2.62
3783 3962 1.209747 GGACGCCATCCCTAAGAAAGT 59.790 52.381 0.00 0.00 42.46 2.66
3784 3963 2.433239 GGACGCCATCCCTAAGAAAGTA 59.567 50.000 0.00 0.00 42.46 2.24
3785 3964 3.492829 GGACGCCATCCCTAAGAAAGTAG 60.493 52.174 0.00 0.00 42.46 2.57
3786 3965 2.434702 ACGCCATCCCTAAGAAAGTAGG 59.565 50.000 0.00 0.00 40.48 3.18
3787 3966 2.807108 CGCCATCCCTAAGAAAGTAGGC 60.807 54.545 0.00 0.00 39.60 3.93
3788 3967 2.487445 GCCATCCCTAAGAAAGTAGGCC 60.487 54.545 0.00 0.00 39.60 5.19
3789 3968 2.777692 CCATCCCTAAGAAAGTAGGCCA 59.222 50.000 5.01 0.00 39.60 5.36
3790 3969 3.395941 CCATCCCTAAGAAAGTAGGCCAT 59.604 47.826 5.01 0.00 39.60 4.40
3791 3970 4.141158 CCATCCCTAAGAAAGTAGGCCATT 60.141 45.833 5.01 0.00 39.60 3.16
3792 3971 4.772886 TCCCTAAGAAAGTAGGCCATTC 57.227 45.455 5.01 3.88 39.60 2.67
3793 3972 4.108570 TCCCTAAGAAAGTAGGCCATTCA 58.891 43.478 5.01 0.00 39.60 2.57
3794 3973 4.538490 TCCCTAAGAAAGTAGGCCATTCAA 59.462 41.667 5.01 0.00 39.60 2.69
3795 3974 4.640647 CCCTAAGAAAGTAGGCCATTCAAC 59.359 45.833 5.01 0.00 39.60 3.18
3796 3975 5.501156 CCTAAGAAAGTAGGCCATTCAACT 58.499 41.667 5.01 0.00 34.50 3.16
3797 3976 5.946377 CCTAAGAAAGTAGGCCATTCAACTT 59.054 40.000 5.01 6.49 34.50 2.66
3798 3977 6.434340 CCTAAGAAAGTAGGCCATTCAACTTT 59.566 38.462 5.01 12.24 43.06 2.66
3802 3981 5.453567 AAGTAGGCCATTCAACTTTCAAC 57.546 39.130 5.01 0.00 0.00 3.18
3803 3982 4.729868 AGTAGGCCATTCAACTTTCAACT 58.270 39.130 5.01 0.00 0.00 3.16
3804 3983 4.520492 AGTAGGCCATTCAACTTTCAACTG 59.480 41.667 5.01 0.00 0.00 3.16
3805 3984 2.036346 AGGCCATTCAACTTTCAACTGC 59.964 45.455 5.01 0.00 0.00 4.40
3806 3985 2.224018 GGCCATTCAACTTTCAACTGCA 60.224 45.455 0.00 0.00 0.00 4.41
3807 3986 3.555586 GGCCATTCAACTTTCAACTGCAT 60.556 43.478 0.00 0.00 0.00 3.96
3808 3987 3.676646 GCCATTCAACTTTCAACTGCATC 59.323 43.478 0.00 0.00 0.00 3.91
3809 3988 4.240096 CCATTCAACTTTCAACTGCATCC 58.760 43.478 0.00 0.00 0.00 3.51
3810 3989 4.021719 CCATTCAACTTTCAACTGCATCCT 60.022 41.667 0.00 0.00 0.00 3.24
3811 3990 5.510179 CCATTCAACTTTCAACTGCATCCTT 60.510 40.000 0.00 0.00 0.00 3.36
3812 3991 5.596836 TTCAACTTTCAACTGCATCCTTT 57.403 34.783 0.00 0.00 0.00 3.11
3813 3992 6.707440 TTCAACTTTCAACTGCATCCTTTA 57.293 33.333 0.00 0.00 0.00 1.85
3814 3993 6.707440 TCAACTTTCAACTGCATCCTTTAA 57.293 33.333 0.00 0.00 0.00 1.52
3815 3994 7.106439 TCAACTTTCAACTGCATCCTTTAAA 57.894 32.000 0.00 0.00 0.00 1.52
3816 3995 7.725251 TCAACTTTCAACTGCATCCTTTAAAT 58.275 30.769 0.00 0.00 0.00 1.40
3817 3996 8.855110 TCAACTTTCAACTGCATCCTTTAAATA 58.145 29.630 0.00 0.00 0.00 1.40
3818 3997 9.643693 CAACTTTCAACTGCATCCTTTAAATAT 57.356 29.630 0.00 0.00 0.00 1.28
3819 3998 9.860898 AACTTTCAACTGCATCCTTTAAATATC 57.139 29.630 0.00 0.00 0.00 1.63
3820 3999 9.247861 ACTTTCAACTGCATCCTTTAAATATCT 57.752 29.630 0.00 0.00 0.00 1.98
3823 4002 9.466497 TTCAACTGCATCCTTTAAATATCTTCT 57.534 29.630 0.00 0.00 0.00 2.85
3824 4003 9.466497 TCAACTGCATCCTTTAAATATCTTCTT 57.534 29.630 0.00 0.00 0.00 2.52
3847 4026 9.840427 TCTTAGTTTCAGCACAAATTTTATAGC 57.160 29.630 0.00 0.00 0.00 2.97
3848 4027 8.667987 TTAGTTTCAGCACAAATTTTATAGCG 57.332 30.769 0.00 0.00 0.00 4.26
3849 4028 5.572896 AGTTTCAGCACAAATTTTATAGCGC 59.427 36.000 0.00 0.00 0.00 5.92
3850 4029 4.027572 TCAGCACAAATTTTATAGCGCC 57.972 40.909 2.29 0.00 0.00 6.53
3851 4030 2.783284 CAGCACAAATTTTATAGCGCCG 59.217 45.455 2.29 0.00 0.00 6.46
3852 4031 2.680841 AGCACAAATTTTATAGCGCCGA 59.319 40.909 2.29 0.00 0.00 5.54
3853 4032 3.315191 AGCACAAATTTTATAGCGCCGAT 59.685 39.130 2.29 0.00 0.00 4.18
3854 4033 3.664025 GCACAAATTTTATAGCGCCGATC 59.336 43.478 2.29 0.00 0.00 3.69
3855 4034 4.788201 GCACAAATTTTATAGCGCCGATCA 60.788 41.667 2.29 0.00 0.00 2.92
3856 4035 5.451908 CACAAATTTTATAGCGCCGATCAT 58.548 37.500 2.29 0.00 0.00 2.45
3857 4036 5.565259 CACAAATTTTATAGCGCCGATCATC 59.435 40.000 2.29 0.00 0.00 2.92
3858 4037 5.238432 ACAAATTTTATAGCGCCGATCATCA 59.762 36.000 2.29 0.00 0.00 3.07
3859 4038 4.928661 ATTTTATAGCGCCGATCATCAC 57.071 40.909 2.29 0.00 0.00 3.06
3860 4039 3.378911 TTTATAGCGCCGATCATCACA 57.621 42.857 2.29 0.00 0.00 3.58
3861 4040 3.378911 TTATAGCGCCGATCATCACAA 57.621 42.857 2.29 0.00 0.00 3.33
3862 4041 2.238942 ATAGCGCCGATCATCACAAA 57.761 45.000 2.29 0.00 0.00 2.83
3863 4042 2.017138 TAGCGCCGATCATCACAAAA 57.983 45.000 2.29 0.00 0.00 2.44
3864 4043 1.164411 AGCGCCGATCATCACAAAAA 58.836 45.000 2.29 0.00 0.00 1.94
3883 4062 5.984233 AAAAAGAGGCGGAATTGTTTTTC 57.016 34.783 0.00 0.00 0.00 2.29
3884 4063 3.660501 AAGAGGCGGAATTGTTTTTCC 57.339 42.857 0.00 0.00 41.54 3.13
3885 4064 2.876581 AGAGGCGGAATTGTTTTTCCT 58.123 42.857 2.09 0.00 42.57 3.36
3886 4065 2.558359 AGAGGCGGAATTGTTTTTCCTG 59.442 45.455 2.09 0.00 42.57 3.86
3887 4066 2.556622 GAGGCGGAATTGTTTTTCCTGA 59.443 45.455 2.09 0.00 42.57 3.86
3888 4067 3.165071 AGGCGGAATTGTTTTTCCTGAT 58.835 40.909 2.09 0.00 42.57 2.90
3889 4068 3.193479 AGGCGGAATTGTTTTTCCTGATC 59.807 43.478 2.09 0.00 42.57 2.92
3890 4069 3.056891 GGCGGAATTGTTTTTCCTGATCA 60.057 43.478 0.00 0.00 42.57 2.92
3891 4070 3.920412 GCGGAATTGTTTTTCCTGATCAC 59.080 43.478 0.00 0.00 42.57 3.06
3892 4071 4.558496 GCGGAATTGTTTTTCCTGATCACA 60.558 41.667 0.00 0.00 42.57 3.58
3893 4072 5.527951 CGGAATTGTTTTTCCTGATCACAA 58.472 37.500 0.00 0.00 42.57 3.33
3894 4073 5.982516 CGGAATTGTTTTTCCTGATCACAAA 59.017 36.000 0.00 0.00 42.57 2.83
3895 4074 6.478344 CGGAATTGTTTTTCCTGATCACAAAA 59.522 34.615 0.00 0.00 42.57 2.44
3896 4075 7.171337 CGGAATTGTTTTTCCTGATCACAAAAT 59.829 33.333 8.12 0.00 42.57 1.82
3897 4076 8.498358 GGAATTGTTTTTCCTGATCACAAAATC 58.502 33.333 8.12 8.17 41.69 2.17
3898 4077 7.642071 ATTGTTTTTCCTGATCACAAAATCG 57.358 32.000 8.12 0.00 31.39 3.34
3899 4078 5.527951 TGTTTTTCCTGATCACAAAATCGG 58.472 37.500 8.12 0.00 32.71 4.18
3900 4079 3.848272 TTTCCTGATCACAAAATCGGC 57.152 42.857 0.00 0.00 31.74 5.54
3901 4080 2.488204 TCCTGATCACAAAATCGGCA 57.512 45.000 0.00 0.00 31.74 5.69
3902 4081 3.003394 TCCTGATCACAAAATCGGCAT 57.997 42.857 0.00 0.00 31.74 4.40
3903 4082 3.355378 TCCTGATCACAAAATCGGCATT 58.645 40.909 0.00 0.00 31.74 3.56
3904 4083 3.763360 TCCTGATCACAAAATCGGCATTT 59.237 39.130 0.00 0.00 33.27 2.32
3905 4084 4.220382 TCCTGATCACAAAATCGGCATTTT 59.780 37.500 0.00 2.99 42.03 1.82
3906 4085 4.931002 CCTGATCACAAAATCGGCATTTTT 59.069 37.500 0.00 0.00 39.75 1.94
3907 4086 5.163933 CCTGATCACAAAATCGGCATTTTTG 60.164 40.000 16.09 16.09 45.29 2.44
3908 4087 4.152045 TGATCACAAAATCGGCATTTTTGC 59.848 37.500 17.09 6.22 44.22 3.68
3916 4095 4.289312 GCATTTTTGCCCTGCCAG 57.711 55.556 0.00 0.00 0.00 4.85
3917 4096 1.672898 GCATTTTTGCCCTGCCAGA 59.327 52.632 0.00 0.00 0.00 3.86
3918 4097 0.671472 GCATTTTTGCCCTGCCAGAC 60.671 55.000 0.00 0.00 0.00 3.51
3919 4098 0.037046 CATTTTTGCCCTGCCAGACC 60.037 55.000 0.00 0.00 0.00 3.85
3920 4099 1.535204 ATTTTTGCCCTGCCAGACCG 61.535 55.000 0.00 0.00 0.00 4.79
3921 4100 4.659172 TTTGCCCTGCCAGACCGG 62.659 66.667 0.00 0.00 38.11 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.590575 ACCTGTGCCGTTCCGTTG 60.591 61.111 0.00 0.00 0.00 4.10
11 12 2.738521 CTCACCTGTGCCGTTCCG 60.739 66.667 0.00 0.00 0.00 4.30
46 47 5.766150 TTAACTTTGCAGCATGTAAGTGT 57.234 34.783 11.01 5.47 42.90 3.55
48 49 5.163513 GCATTAACTTTGCAGCATGTAAGT 58.836 37.500 5.29 5.29 42.90 2.24
136 137 1.519455 GCAGGGTGTCTCCGAATCG 60.519 63.158 0.00 0.00 37.00 3.34
182 183 0.244721 TGATGAGCACGAGTGTCAGG 59.755 55.000 5.07 0.00 0.00 3.86
201 202 4.101448 GGGCCGAGCTGATGTGGT 62.101 66.667 0.00 0.00 0.00 4.16
226 227 4.925054 TGAGTTAGTTATACGCACACAACC 59.075 41.667 0.00 0.00 0.00 3.77
235 236 2.787680 GCAGCGGTGAGTTAGTTATACG 59.212 50.000 20.69 0.00 0.00 3.06
240 241 0.679505 TCTGCAGCGGTGAGTTAGTT 59.320 50.000 20.69 0.00 0.00 2.24
276 277 1.299648 CCCCTGAAAGCGACCATGA 59.700 57.895 0.00 0.00 0.00 3.07
282 283 0.179004 TTCTTTGCCCCTGAAAGCGA 60.179 50.000 0.00 0.00 31.57 4.93
284 285 1.039856 TGTTCTTTGCCCCTGAAAGC 58.960 50.000 0.00 0.00 31.57 3.51
292 293 0.467290 TCAGTGGGTGTTCTTTGCCC 60.467 55.000 0.00 0.00 42.64 5.36
310 311 2.340337 GCAGTGGCAAATGGATGTTTC 58.660 47.619 0.00 0.00 40.72 2.78
328 329 0.173935 GCATGCCAAGCTGTAATGCA 59.826 50.000 6.36 8.22 42.48 3.96
352 353 1.375523 AAGGCGGTGGAATCGTGTC 60.376 57.895 0.00 0.00 0.00 3.67
355 356 2.746277 GCAAGGCGGTGGAATCGT 60.746 61.111 0.00 0.00 0.00 3.73
625 633 0.309922 CGCCTCGCCTCGTTTATCTA 59.690 55.000 0.00 0.00 0.00 1.98
894 937 3.839432 GAGGGAGGAAGCGGACGG 61.839 72.222 0.00 0.00 0.00 4.79
904 947 4.505970 CAGGGGAGGGGAGGGAGG 62.506 77.778 0.00 0.00 0.00 4.30
944 987 2.802816 GAGGACGGATTTGAATCGGATG 59.197 50.000 15.45 1.84 38.61 3.51
1149 1204 2.836154 GGGACCTTGTGAGCCACA 59.164 61.111 4.16 4.16 43.02 4.17
1222 1277 6.729690 AATTCAAATCCCAGACAGAACAAA 57.270 33.333 0.00 0.00 0.00 2.83
1224 1279 5.598005 ACAAATTCAAATCCCAGACAGAACA 59.402 36.000 0.00 0.00 0.00 3.18
1248 1335 4.966787 GTCAGCCCCGGCCAACAA 62.967 66.667 2.24 0.00 43.17 2.83
1271 1365 1.884579 GCTGCCATCCATCCATTACAG 59.115 52.381 0.00 0.00 0.00 2.74
1317 1415 3.197790 CCCCAGAACAGCGCGATG 61.198 66.667 24.69 24.69 0.00 3.84
1546 1644 2.634940 CCATCCCAACGGATCTACTGAT 59.365 50.000 0.00 0.00 46.77 2.90
1548 1646 1.541233 GCCATCCCAACGGATCTACTG 60.541 57.143 0.00 0.00 46.77 2.74
1586 1689 2.677979 CGCACCTCTGTCGAGTCGA 61.678 63.158 12.09 12.09 35.43 4.20
1768 1886 8.524870 AACTGGATTTGAAATTTTGAATCGAG 57.475 30.769 22.90 22.90 39.06 4.04
1771 1889 9.480053 TCTGAACTGGATTTGAAATTTTGAATC 57.520 29.630 14.39 14.39 0.00 2.52
1812 1936 5.869579 ACGCCATTGATTCTTACCATATCT 58.130 37.500 0.00 0.00 0.00 1.98
1838 1962 4.439563 GCACAATCCAACCGGGTTAATTAG 60.440 45.833 12.95 11.58 31.07 1.73
1847 1974 3.039202 GCGAGCACAATCCAACCGG 62.039 63.158 0.00 0.00 0.00 5.28
2244 2371 2.104859 CAGCAGGTGGTCGATGCAG 61.105 63.158 10.33 0.00 42.45 4.41
2371 2498 2.255554 CTGCTGCTGCTGTTGCTG 59.744 61.111 17.00 4.65 40.48 4.41
2372 2499 3.671411 GCTGCTGCTGCTGTTGCT 61.671 61.111 22.10 0.00 39.81 3.91
2373 2500 3.898627 CTGCTGCTGCTGCTGTTGC 62.899 63.158 27.67 16.48 39.81 4.17
2374 2501 2.255554 CTGCTGCTGCTGCTGTTG 59.744 61.111 27.67 13.98 39.81 3.33
2375 2502 2.984155 CCTGCTGCTGCTGCTGTT 60.984 61.111 27.67 0.00 39.81 3.16
2506 2639 1.203563 GATCGTGATGCATCTGCGC 59.796 57.895 26.32 14.58 45.83 6.09
2790 2926 3.599792 CTTTGCTGACGGCTTGCCG 62.600 63.158 29.32 29.32 42.39 5.69
2791 2927 2.256461 CTTTGCTGACGGCTTGCC 59.744 61.111 7.96 0.75 42.39 4.52
2792 2928 2.256461 CCTTTGCTGACGGCTTGC 59.744 61.111 7.96 0.00 42.39 4.01
2793 2929 2.256461 GCCTTTGCTGACGGCTTG 59.744 61.111 7.96 0.00 40.62 4.01
2794 2930 3.357079 CGCCTTTGCTGACGGCTT 61.357 61.111 7.96 0.00 41.61 4.35
3192 3336 4.916041 AGATGATCAGGAGGAAACACAA 57.084 40.909 0.09 0.00 0.00 3.33
3386 3558 3.722147 TCTCGATATCCAGAGCAAAAGC 58.278 45.455 0.00 0.00 34.66 3.51
3406 3578 4.607955 TCGTGTGTATAGCAGTGCTAATC 58.392 43.478 27.75 21.71 44.62 1.75
3407 3579 4.649088 TCGTGTGTATAGCAGTGCTAAT 57.351 40.909 27.75 17.84 44.62 1.73
3408 3580 4.359706 CATCGTGTGTATAGCAGTGCTAA 58.640 43.478 27.75 14.57 44.62 3.09
3409 3581 3.795488 GCATCGTGTGTATAGCAGTGCTA 60.795 47.826 26.38 26.38 45.55 3.49
3410 3582 2.814269 CATCGTGTGTATAGCAGTGCT 58.186 47.619 23.44 23.44 43.41 4.40
3411 3583 1.258982 GCATCGTGTGTATAGCAGTGC 59.741 52.381 7.13 7.13 0.00 4.40
3412 3584 2.814269 AGCATCGTGTGTATAGCAGTG 58.186 47.619 0.00 0.00 0.00 3.66
3413 3585 4.649088 TTAGCATCGTGTGTATAGCAGT 57.351 40.909 0.00 0.00 0.00 4.40
3414 3586 5.287274 GCTATTAGCATCGTGTGTATAGCAG 59.713 44.000 10.83 0.00 41.89 4.24
3415 3587 5.161358 GCTATTAGCATCGTGTGTATAGCA 58.839 41.667 10.83 0.00 41.89 3.49
3416 3588 4.563184 GGCTATTAGCATCGTGTGTATAGC 59.437 45.833 17.11 0.00 44.75 2.97
3417 3589 4.793731 CGGCTATTAGCATCGTGTGTATAG 59.206 45.833 17.11 0.00 44.75 1.31
3418 3590 4.456566 TCGGCTATTAGCATCGTGTGTATA 59.543 41.667 17.11 0.00 44.75 1.47
3419 3591 3.254903 TCGGCTATTAGCATCGTGTGTAT 59.745 43.478 17.11 0.00 44.75 2.29
3420 3592 2.619646 TCGGCTATTAGCATCGTGTGTA 59.380 45.455 17.11 0.00 44.75 2.90
3421 3593 1.407618 TCGGCTATTAGCATCGTGTGT 59.592 47.619 17.11 0.00 44.75 3.72
3422 3594 2.134201 TCGGCTATTAGCATCGTGTG 57.866 50.000 17.11 0.00 44.75 3.82
3423 3595 3.386768 AATCGGCTATTAGCATCGTGT 57.613 42.857 17.11 4.25 44.75 4.49
3424 3596 3.494626 ACAAATCGGCTATTAGCATCGTG 59.505 43.478 17.11 10.08 44.75 4.35
3425 3597 3.494626 CACAAATCGGCTATTAGCATCGT 59.505 43.478 17.11 2.98 44.75 3.73
3426 3598 3.120546 CCACAAATCGGCTATTAGCATCG 60.121 47.826 17.11 12.05 44.75 3.84
3427 3599 4.065088 TCCACAAATCGGCTATTAGCATC 58.935 43.478 17.11 0.33 44.75 3.91
3428 3600 3.815401 GTCCACAAATCGGCTATTAGCAT 59.185 43.478 17.11 0.61 44.75 3.79
3429 3601 3.202906 GTCCACAAATCGGCTATTAGCA 58.797 45.455 17.11 0.00 44.75 3.49
3430 3602 2.221055 CGTCCACAAATCGGCTATTAGC 59.779 50.000 7.16 7.16 41.46 3.09
3431 3603 3.489785 GTCGTCCACAAATCGGCTATTAG 59.510 47.826 0.00 0.00 0.00 1.73
3432 3604 3.450578 GTCGTCCACAAATCGGCTATTA 58.549 45.455 0.00 0.00 0.00 0.98
3433 3605 2.277084 GTCGTCCACAAATCGGCTATT 58.723 47.619 0.00 0.00 0.00 1.73
3434 3606 1.801395 CGTCGTCCACAAATCGGCTAT 60.801 52.381 0.00 0.00 0.00 2.97
3435 3607 0.457166 CGTCGTCCACAAATCGGCTA 60.457 55.000 0.00 0.00 0.00 3.93
3436 3608 1.736645 CGTCGTCCACAAATCGGCT 60.737 57.895 0.00 0.00 0.00 5.52
3437 3609 2.776072 CGTCGTCCACAAATCGGC 59.224 61.111 0.00 0.00 0.00 5.54
3438 3610 1.736645 AGCGTCGTCCACAAATCGG 60.737 57.895 0.00 0.00 0.00 4.18
3439 3611 1.416049 CAGCGTCGTCCACAAATCG 59.584 57.895 0.00 0.00 0.00 3.34
3440 3612 0.669318 TCCAGCGTCGTCCACAAATC 60.669 55.000 0.00 0.00 0.00 2.17
3441 3613 0.670546 CTCCAGCGTCGTCCACAAAT 60.671 55.000 0.00 0.00 0.00 2.32
3442 3614 1.300620 CTCCAGCGTCGTCCACAAA 60.301 57.895 0.00 0.00 0.00 2.83
3443 3615 1.532604 ATCTCCAGCGTCGTCCACAA 61.533 55.000 0.00 0.00 0.00 3.33
3444 3616 1.934220 GATCTCCAGCGTCGTCCACA 61.934 60.000 0.00 0.00 0.00 4.17
3445 3617 1.226717 GATCTCCAGCGTCGTCCAC 60.227 63.158 0.00 0.00 0.00 4.02
3446 3618 1.677633 TGATCTCCAGCGTCGTCCA 60.678 57.895 0.00 0.00 0.00 4.02
3447 3619 1.226717 GTGATCTCCAGCGTCGTCC 60.227 63.158 0.00 0.00 0.00 4.79
3448 3620 0.798771 GTGTGATCTCCAGCGTCGTC 60.799 60.000 0.00 0.00 0.00 4.20
3449 3621 1.213013 GTGTGATCTCCAGCGTCGT 59.787 57.895 0.00 0.00 0.00 4.34
3450 3622 1.517257 GGTGTGATCTCCAGCGTCG 60.517 63.158 0.00 0.00 0.00 5.12
3451 3623 0.176680 ATGGTGTGATCTCCAGCGTC 59.823 55.000 9.76 0.00 39.98 5.19
3452 3624 1.137086 GTATGGTGTGATCTCCAGCGT 59.863 52.381 12.37 12.37 39.98 5.07
3453 3625 1.858091 GTATGGTGTGATCTCCAGCG 58.142 55.000 9.76 0.00 39.98 5.18
3454 3626 1.137086 ACGTATGGTGTGATCTCCAGC 59.863 52.381 9.76 8.83 39.98 4.85
3455 3627 2.541794 CGACGTATGGTGTGATCTCCAG 60.542 54.545 9.76 1.73 39.98 3.86
3456 3628 1.404035 CGACGTATGGTGTGATCTCCA 59.596 52.381 0.00 7.16 40.73 3.86
3457 3629 1.864435 GCGACGTATGGTGTGATCTCC 60.864 57.143 0.00 0.00 0.00 3.71
3458 3630 1.202256 TGCGACGTATGGTGTGATCTC 60.202 52.381 0.00 0.00 0.00 2.75
3459 3631 0.815095 TGCGACGTATGGTGTGATCT 59.185 50.000 0.00 0.00 0.00 2.75
3460 3632 0.921347 GTGCGACGTATGGTGTGATC 59.079 55.000 0.00 0.00 0.00 2.92
3461 3633 0.800683 CGTGCGACGTATGGTGTGAT 60.801 55.000 0.00 0.00 36.74 3.06
3462 3634 1.443025 CGTGCGACGTATGGTGTGA 60.443 57.895 0.00 0.00 36.74 3.58
3463 3635 2.441378 CCGTGCGACGTATGGTGTG 61.441 63.158 15.30 0.00 40.58 3.82
3464 3636 2.126228 CCGTGCGACGTATGGTGT 60.126 61.111 15.30 0.00 40.58 4.16
3465 3637 3.550992 GCCGTGCGACGTATGGTG 61.551 66.667 22.78 2.02 40.58 4.17
3466 3638 3.982372 CTGCCGTGCGACGTATGGT 62.982 63.158 22.78 0.00 40.58 3.55
3467 3639 3.254654 CTGCCGTGCGACGTATGG 61.255 66.667 18.72 18.72 40.58 2.74
3468 3640 3.913573 GCTGCCGTGCGACGTATG 61.914 66.667 0.00 0.00 40.58 2.39
3469 3641 4.429212 TGCTGCCGTGCGACGTAT 62.429 61.111 0.00 0.00 40.58 3.06
3492 3664 1.014352 GACATATCCAACGGTGCACC 58.986 55.000 26.78 26.78 0.00 5.01
3493 3665 0.650512 CGACATATCCAACGGTGCAC 59.349 55.000 8.80 8.80 0.00 4.57
3494 3666 0.248012 ACGACATATCCAACGGTGCA 59.752 50.000 0.00 0.00 0.00 4.57
3495 3667 1.326548 GAACGACATATCCAACGGTGC 59.673 52.381 0.00 0.00 0.00 5.01
3496 3668 1.586578 CGAACGACATATCCAACGGTG 59.413 52.381 0.00 0.00 0.00 4.94
3497 3669 1.470285 CCGAACGACATATCCAACGGT 60.470 52.381 0.00 0.00 35.40 4.83
3498 3670 1.205657 CCGAACGACATATCCAACGG 58.794 55.000 0.00 0.00 0.00 4.44
3499 3671 0.575390 GCCGAACGACATATCCAACG 59.425 55.000 0.00 0.00 0.00 4.10
3500 3672 1.593006 CAGCCGAACGACATATCCAAC 59.407 52.381 0.00 0.00 0.00 3.77
3501 3673 1.206132 ACAGCCGAACGACATATCCAA 59.794 47.619 0.00 0.00 0.00 3.53
3502 3674 0.821517 ACAGCCGAACGACATATCCA 59.178 50.000 0.00 0.00 0.00 3.41
3503 3675 2.787601 TACAGCCGAACGACATATCC 57.212 50.000 0.00 0.00 0.00 2.59
3504 3676 3.639538 ACATACAGCCGAACGACATATC 58.360 45.455 0.00 0.00 0.00 1.63
3505 3677 3.639538 GACATACAGCCGAACGACATAT 58.360 45.455 0.00 0.00 0.00 1.78
3506 3678 2.540157 CGACATACAGCCGAACGACATA 60.540 50.000 0.00 0.00 0.00 2.29
3507 3679 1.797713 CGACATACAGCCGAACGACAT 60.798 52.381 0.00 0.00 0.00 3.06
3508 3680 0.455464 CGACATACAGCCGAACGACA 60.455 55.000 0.00 0.00 0.00 4.35
3509 3681 0.455633 ACGACATACAGCCGAACGAC 60.456 55.000 0.00 0.00 0.00 4.34
3510 3682 0.179181 GACGACATACAGCCGAACGA 60.179 55.000 0.00 0.00 0.00 3.85
3511 3683 0.179171 AGACGACATACAGCCGAACG 60.179 55.000 0.00 0.00 0.00 3.95
3512 3684 1.269166 CAGACGACATACAGCCGAAC 58.731 55.000 0.00 0.00 0.00 3.95
3513 3685 0.885879 ACAGACGACATACAGCCGAA 59.114 50.000 0.00 0.00 0.00 4.30
3514 3686 0.170339 CACAGACGACATACAGCCGA 59.830 55.000 0.00 0.00 0.00 5.54
3515 3687 1.413767 GCACAGACGACATACAGCCG 61.414 60.000 0.00 0.00 0.00 5.52
3516 3688 0.389817 TGCACAGACGACATACAGCC 60.390 55.000 0.00 0.00 0.00 4.85
3517 3689 0.994995 CTGCACAGACGACATACAGC 59.005 55.000 0.00 0.00 0.00 4.40
3518 3690 2.354109 ACTGCACAGACGACATACAG 57.646 50.000 4.31 0.00 0.00 2.74
3519 3691 3.486875 CGATACTGCACAGACGACATACA 60.487 47.826 4.31 0.00 0.00 2.29
3520 3692 3.036633 CGATACTGCACAGACGACATAC 58.963 50.000 4.31 0.00 0.00 2.39
3521 3693 2.032924 CCGATACTGCACAGACGACATA 59.967 50.000 4.31 0.00 0.00 2.29
3522 3694 1.202302 CCGATACTGCACAGACGACAT 60.202 52.381 4.31 0.00 0.00 3.06
3523 3695 0.170339 CCGATACTGCACAGACGACA 59.830 55.000 4.31 0.00 0.00 4.35
3524 3696 1.140407 GCCGATACTGCACAGACGAC 61.140 60.000 4.31 0.00 0.00 4.34
3525 3697 1.138883 GCCGATACTGCACAGACGA 59.861 57.895 4.31 0.00 0.00 4.20
3526 3698 1.139734 AGCCGATACTGCACAGACG 59.860 57.895 4.31 7.08 0.00 4.18
3527 3699 2.670635 CAGCCGATACTGCACAGAC 58.329 57.895 4.31 0.00 0.00 3.51
3543 3715 3.237522 TCGATACGAAACTGCTGTGCAG 61.238 50.000 16.77 16.77 46.85 4.41
3544 3716 1.067693 CGATACGAAACTGCTGTGCA 58.932 50.000 0.00 0.00 36.92 4.57
3545 3717 1.321743 CTCGATACGAAACTGCTGTGC 59.678 52.381 0.00 0.00 34.74 4.57
3546 3718 2.863739 TCTCGATACGAAACTGCTGTG 58.136 47.619 0.00 0.00 34.74 3.66
3547 3719 3.784701 ATCTCGATACGAAACTGCTGT 57.215 42.857 0.00 0.00 34.74 4.40
3548 3720 4.327357 ACAAATCTCGATACGAAACTGCTG 59.673 41.667 0.00 0.00 34.74 4.41
3549 3721 4.495422 ACAAATCTCGATACGAAACTGCT 58.505 39.130 0.00 0.00 34.74 4.24
3550 3722 4.546456 CGACAAATCTCGATACGAAACTGC 60.546 45.833 0.00 0.00 34.74 4.40
3551 3723 4.791676 TCGACAAATCTCGATACGAAACTG 59.208 41.667 0.00 0.00 37.76 3.16
3552 3724 4.978186 TCGACAAATCTCGATACGAAACT 58.022 39.130 0.00 0.00 37.76 2.66
3561 3733 2.959516 ACTTGCATCGACAAATCTCGA 58.040 42.857 0.00 0.00 46.31 4.04
3562 3734 3.369147 AGAACTTGCATCGACAAATCTCG 59.631 43.478 0.00 0.00 34.83 4.04
3563 3735 4.153117 ACAGAACTTGCATCGACAAATCTC 59.847 41.667 0.00 0.00 0.00 2.75
3564 3736 4.067896 ACAGAACTTGCATCGACAAATCT 58.932 39.130 0.00 0.00 0.00 2.40
3565 3737 4.410492 ACAGAACTTGCATCGACAAATC 57.590 40.909 0.00 0.00 0.00 2.17
3600 3772 2.579738 GGAGCTTGGACCTCGGTC 59.420 66.667 7.57 7.57 43.87 4.79
3608 3780 0.178935 CCAAAAAGGGGGAGCTTGGA 60.179 55.000 0.00 0.00 39.12 3.53
3617 3789 1.815817 CTTCGCCCACCAAAAAGGGG 61.816 60.000 0.00 0.00 45.58 4.79
3645 3821 2.898705 CTCTGCTCCTGATAAGCGTTT 58.101 47.619 0.00 0.00 42.83 3.60
3646 3822 1.472376 GCTCTGCTCCTGATAAGCGTT 60.472 52.381 0.00 0.00 42.83 4.84
3647 3823 0.103937 GCTCTGCTCCTGATAAGCGT 59.896 55.000 0.00 0.00 42.83 5.07
3648 3824 0.103755 TGCTCTGCTCCTGATAAGCG 59.896 55.000 0.00 0.00 42.83 4.68
3649 3825 1.868469 CTGCTCTGCTCCTGATAAGC 58.132 55.000 0.00 0.00 40.26 3.09
3650 3826 1.138464 TGCTGCTCTGCTCCTGATAAG 59.862 52.381 0.00 0.00 0.00 1.73
3651 3827 1.197812 TGCTGCTCTGCTCCTGATAA 58.802 50.000 0.00 0.00 0.00 1.75
3652 3828 1.134580 GTTGCTGCTCTGCTCCTGATA 60.135 52.381 0.00 0.00 0.00 2.15
3654 3830 1.004080 GTTGCTGCTCTGCTCCTGA 60.004 57.895 0.00 0.00 0.00 3.86
3655 3831 0.887836 TTGTTGCTGCTCTGCTCCTG 60.888 55.000 0.00 0.00 0.00 3.86
3681 3860 0.314302 CGTCGTCCTGGTTCTTGTCT 59.686 55.000 0.00 0.00 0.00 3.41
3685 3864 0.748450 TTGTCGTCGTCCTGGTTCTT 59.252 50.000 0.00 0.00 0.00 2.52
3686 3865 0.031721 GTTGTCGTCGTCCTGGTTCT 59.968 55.000 0.00 0.00 0.00 3.01
3687 3866 0.249155 TGTTGTCGTCGTCCTGGTTC 60.249 55.000 0.00 0.00 0.00 3.62
3688 3867 0.176219 TTGTTGTCGTCGTCCTGGTT 59.824 50.000 0.00 0.00 0.00 3.67
3689 3868 0.529119 GTTGTTGTCGTCGTCCTGGT 60.529 55.000 0.00 0.00 0.00 4.00
3690 3869 0.528901 TGTTGTTGTCGTCGTCCTGG 60.529 55.000 0.00 0.00 0.00 4.45
3691 3870 1.005347 GTTGTTGTTGTCGTCGTCCTG 60.005 52.381 0.00 0.00 0.00 3.86
3692 3871 1.283736 GTTGTTGTTGTCGTCGTCCT 58.716 50.000 0.00 0.00 0.00 3.85
3693 3872 0.043652 CGTTGTTGTTGTCGTCGTCC 60.044 55.000 0.00 0.00 0.00 4.79
3694 3873 0.043652 CCGTTGTTGTTGTCGTCGTC 60.044 55.000 0.00 0.00 0.00 4.20
3695 3874 2.000587 CCGTTGTTGTTGTCGTCGT 58.999 52.632 0.00 0.00 0.00 4.34
3696 3875 1.367195 GCCGTTGTTGTTGTCGTCG 60.367 57.895 0.00 0.00 0.00 5.12
3697 3876 0.315869 CTGCCGTTGTTGTTGTCGTC 60.316 55.000 0.00 0.00 0.00 4.20
3698 3877 1.711060 CCTGCCGTTGTTGTTGTCGT 61.711 55.000 0.00 0.00 0.00 4.34
3699 3878 1.010125 CCTGCCGTTGTTGTTGTCG 60.010 57.895 0.00 0.00 0.00 4.35
3700 3879 0.307760 CTCCTGCCGTTGTTGTTGTC 59.692 55.000 0.00 0.00 0.00 3.18
3701 3880 0.393808 ACTCCTGCCGTTGTTGTTGT 60.394 50.000 0.00 0.00 0.00 3.32
3702 3881 0.307760 GACTCCTGCCGTTGTTGTTG 59.692 55.000 0.00 0.00 0.00 3.33
3703 3882 0.180406 AGACTCCTGCCGTTGTTGTT 59.820 50.000 0.00 0.00 0.00 2.83
3704 3883 0.180406 AAGACTCCTGCCGTTGTTGT 59.820 50.000 0.00 0.00 0.00 3.32
3705 3884 0.588252 CAAGACTCCTGCCGTTGTTG 59.412 55.000 0.00 0.00 0.00 3.33
3706 3885 0.535102 CCAAGACTCCTGCCGTTGTT 60.535 55.000 0.00 0.00 0.00 2.83
3707 3886 1.071471 CCAAGACTCCTGCCGTTGT 59.929 57.895 0.00 0.00 0.00 3.32
3708 3887 1.672356 CCCAAGACTCCTGCCGTTG 60.672 63.158 0.00 0.00 0.00 4.10
3709 3888 1.841556 TCCCAAGACTCCTGCCGTT 60.842 57.895 0.00 0.00 0.00 4.44
3710 3889 2.203788 TCCCAAGACTCCTGCCGT 60.204 61.111 0.00 0.00 0.00 5.68
3711 3890 2.266055 GTCCCAAGACTCCTGCCG 59.734 66.667 0.00 0.00 40.10 5.69
3712 3891 2.266055 CGTCCCAAGACTCCTGCC 59.734 66.667 0.00 0.00 41.16 4.85
3713 3892 2.435059 GCGTCCCAAGACTCCTGC 60.435 66.667 0.00 0.00 41.16 4.85
3714 3893 1.903877 ATGGCGTCCCAAGACTCCTG 61.904 60.000 4.08 0.00 46.32 3.86
3715 3894 1.613630 ATGGCGTCCCAAGACTCCT 60.614 57.895 4.08 0.00 46.32 3.69
3716 3895 1.153349 GATGGCGTCCCAAGACTCC 60.153 63.158 0.00 0.00 46.36 3.85
3717 3896 1.153349 GGATGGCGTCCCAAGACTC 60.153 63.158 15.17 0.00 46.14 3.36
3718 3897 2.990479 GGATGGCGTCCCAAGACT 59.010 61.111 15.17 0.00 46.14 3.24
3726 3905 1.395954 GTTCGTTTTAGGGATGGCGTC 59.604 52.381 0.00 0.00 0.00 5.19
3727 3906 1.270947 TGTTCGTTTTAGGGATGGCGT 60.271 47.619 0.00 0.00 0.00 5.68
3728 3907 1.444836 TGTTCGTTTTAGGGATGGCG 58.555 50.000 0.00 0.00 0.00 5.69
3729 3908 5.767816 AATATGTTCGTTTTAGGGATGGC 57.232 39.130 0.00 0.00 0.00 4.40
3741 3920 9.635520 CGTCCCTAAGATAAATAATATGTTCGT 57.364 33.333 0.00 0.00 0.00 3.85
3742 3921 8.592998 GCGTCCCTAAGATAAATAATATGTTCG 58.407 37.037 0.00 0.00 0.00 3.95
3743 3922 8.880750 GGCGTCCCTAAGATAAATAATATGTTC 58.119 37.037 0.00 0.00 0.00 3.18
3744 3923 8.380099 TGGCGTCCCTAAGATAAATAATATGTT 58.620 33.333 0.00 0.00 0.00 2.71
3745 3924 7.913789 TGGCGTCCCTAAGATAAATAATATGT 58.086 34.615 0.00 0.00 0.00 2.29
3746 3925 8.964476 ATGGCGTCCCTAAGATAAATAATATG 57.036 34.615 0.00 0.00 0.00 1.78
3747 3926 8.211629 GGATGGCGTCCCTAAGATAAATAATAT 58.788 37.037 15.17 0.00 41.50 1.28
3748 3927 7.562135 GGATGGCGTCCCTAAGATAAATAATA 58.438 38.462 15.17 0.00 41.50 0.98
3749 3928 6.415573 GGATGGCGTCCCTAAGATAAATAAT 58.584 40.000 15.17 0.00 41.50 1.28
3750 3929 5.801380 GGATGGCGTCCCTAAGATAAATAA 58.199 41.667 15.17 0.00 41.50 1.40
3751 3930 5.416271 GGATGGCGTCCCTAAGATAAATA 57.584 43.478 15.17 0.00 41.50 1.40
3752 3931 4.287766 GGATGGCGTCCCTAAGATAAAT 57.712 45.455 15.17 0.00 41.50 1.40
3753 3932 3.764237 GGATGGCGTCCCTAAGATAAA 57.236 47.619 15.17 0.00 41.50 1.40
3764 3943 2.693267 ACTTTCTTAGGGATGGCGTC 57.307 50.000 0.00 0.00 0.00 5.19
3765 3944 2.434702 CCTACTTTCTTAGGGATGGCGT 59.565 50.000 0.00 0.00 35.78 5.68
3766 3945 2.807108 GCCTACTTTCTTAGGGATGGCG 60.807 54.545 0.00 0.00 39.39 5.69
3767 3946 2.487445 GGCCTACTTTCTTAGGGATGGC 60.487 54.545 0.00 0.00 39.39 4.40
3768 3947 2.777692 TGGCCTACTTTCTTAGGGATGG 59.222 50.000 3.32 0.00 39.39 3.51
3769 3948 4.713792 ATGGCCTACTTTCTTAGGGATG 57.286 45.455 3.32 0.00 39.39 3.51
3770 3949 4.726825 TGAATGGCCTACTTTCTTAGGGAT 59.273 41.667 3.32 0.00 39.39 3.85
3771 3950 4.108570 TGAATGGCCTACTTTCTTAGGGA 58.891 43.478 3.32 0.00 39.39 4.20
3772 3951 4.503714 TGAATGGCCTACTTTCTTAGGG 57.496 45.455 3.32 0.00 39.39 3.53
3773 3952 5.501156 AGTTGAATGGCCTACTTTCTTAGG 58.499 41.667 3.32 0.00 41.65 2.69
3774 3953 7.454260 AAAGTTGAATGGCCTACTTTCTTAG 57.546 36.000 3.32 0.00 37.48 2.18
3775 3954 7.448748 GAAAGTTGAATGGCCTACTTTCTTA 57.551 36.000 24.37 8.73 45.95 2.10
3776 3955 6.332735 GAAAGTTGAATGGCCTACTTTCTT 57.667 37.500 24.37 13.70 45.95 2.52
3777 3956 5.966742 GAAAGTTGAATGGCCTACTTTCT 57.033 39.130 24.37 9.88 45.95 2.52
3779 3958 5.598417 AGTTGAAAGTTGAATGGCCTACTTT 59.402 36.000 3.32 11.61 41.98 2.66
3780 3959 5.010012 CAGTTGAAAGTTGAATGGCCTACTT 59.990 40.000 3.32 3.22 34.51 2.24
3781 3960 4.520492 CAGTTGAAAGTTGAATGGCCTACT 59.480 41.667 3.32 0.00 0.00 2.57
3782 3961 4.798574 CAGTTGAAAGTTGAATGGCCTAC 58.201 43.478 3.32 0.00 0.00 3.18
3783 3962 3.255642 GCAGTTGAAAGTTGAATGGCCTA 59.744 43.478 3.32 0.00 0.00 3.93
3784 3963 2.036346 GCAGTTGAAAGTTGAATGGCCT 59.964 45.455 3.32 0.00 0.00 5.19
3785 3964 2.224018 TGCAGTTGAAAGTTGAATGGCC 60.224 45.455 0.00 0.00 0.00 5.36
3786 3965 3.096489 TGCAGTTGAAAGTTGAATGGC 57.904 42.857 0.00 0.00 0.00 4.40
3787 3966 4.021719 AGGATGCAGTTGAAAGTTGAATGG 60.022 41.667 0.00 0.00 0.00 3.16
3788 3967 5.130292 AGGATGCAGTTGAAAGTTGAATG 57.870 39.130 0.00 0.00 0.00 2.67
3789 3968 5.796424 AAGGATGCAGTTGAAAGTTGAAT 57.204 34.783 0.00 0.00 0.00 2.57
3790 3969 5.596836 AAAGGATGCAGTTGAAAGTTGAA 57.403 34.783 0.00 0.00 0.00 2.69
3791 3970 6.707440 TTAAAGGATGCAGTTGAAAGTTGA 57.293 33.333 0.00 0.00 0.00 3.18
3792 3971 7.951530 ATTTAAAGGATGCAGTTGAAAGTTG 57.048 32.000 0.00 0.00 0.00 3.16
3793 3972 9.860898 GATATTTAAAGGATGCAGTTGAAAGTT 57.139 29.630 0.00 0.00 0.00 2.66
3794 3973 9.247861 AGATATTTAAAGGATGCAGTTGAAAGT 57.752 29.630 0.00 0.00 0.00 2.66
3797 3976 9.466497 AGAAGATATTTAAAGGATGCAGTTGAA 57.534 29.630 0.00 0.00 0.00 2.69
3798 3977 9.466497 AAGAAGATATTTAAAGGATGCAGTTGA 57.534 29.630 0.00 0.00 0.00 3.18
3821 4000 9.840427 GCTATAAAATTTGTGCTGAAACTAAGA 57.160 29.630 0.00 0.00 0.00 2.10
3822 4001 8.788813 CGCTATAAAATTTGTGCTGAAACTAAG 58.211 33.333 0.00 0.00 0.00 2.18
3823 4002 7.272515 GCGCTATAAAATTTGTGCTGAAACTAA 59.727 33.333 0.00 0.00 33.71 2.24
3824 4003 6.745450 GCGCTATAAAATTTGTGCTGAAACTA 59.255 34.615 0.00 0.00 33.71 2.24
3825 4004 5.572896 GCGCTATAAAATTTGTGCTGAAACT 59.427 36.000 0.00 0.00 33.71 2.66
3826 4005 5.220209 GGCGCTATAAAATTTGTGCTGAAAC 60.220 40.000 7.64 0.00 36.35 2.78
3827 4006 4.862018 GGCGCTATAAAATTTGTGCTGAAA 59.138 37.500 7.64 0.00 36.35 2.69
3828 4007 4.420168 GGCGCTATAAAATTTGTGCTGAA 58.580 39.130 7.64 0.00 36.35 3.02
3829 4008 3.486708 CGGCGCTATAAAATTTGTGCTGA 60.487 43.478 7.64 0.00 42.76 4.26
3830 4009 2.783284 CGGCGCTATAAAATTTGTGCTG 59.217 45.455 7.64 8.42 36.35 4.41
3831 4010 2.680841 TCGGCGCTATAAAATTTGTGCT 59.319 40.909 7.64 0.00 36.35 4.40
3832 4011 3.059634 TCGGCGCTATAAAATTTGTGC 57.940 42.857 7.64 3.80 35.48 4.57
3833 4012 4.843147 TGATCGGCGCTATAAAATTTGTG 58.157 39.130 7.64 0.00 0.00 3.33
3834 4013 5.238432 TGATGATCGGCGCTATAAAATTTGT 59.762 36.000 7.64 0.00 0.00 2.83
3835 4014 5.565259 GTGATGATCGGCGCTATAAAATTTG 59.435 40.000 7.64 0.00 0.00 2.32
3836 4015 5.238432 TGTGATGATCGGCGCTATAAAATTT 59.762 36.000 7.64 0.00 0.00 1.82
3837 4016 4.754618 TGTGATGATCGGCGCTATAAAATT 59.245 37.500 7.64 0.00 0.00 1.82
3838 4017 4.314961 TGTGATGATCGGCGCTATAAAAT 58.685 39.130 7.64 0.00 0.00 1.82
3839 4018 3.723260 TGTGATGATCGGCGCTATAAAA 58.277 40.909 7.64 0.00 0.00 1.52
3840 4019 3.378911 TGTGATGATCGGCGCTATAAA 57.621 42.857 7.64 0.00 0.00 1.40
3841 4020 3.378911 TTGTGATGATCGGCGCTATAA 57.621 42.857 7.64 0.00 0.00 0.98
3842 4021 3.378911 TTTGTGATGATCGGCGCTATA 57.621 42.857 7.64 0.00 0.00 1.31
3843 4022 2.238942 TTTGTGATGATCGGCGCTAT 57.761 45.000 7.64 0.45 0.00 2.97
3844 4023 2.017138 TTTTGTGATGATCGGCGCTA 57.983 45.000 7.64 0.00 0.00 4.26
3845 4024 1.164411 TTTTTGTGATGATCGGCGCT 58.836 45.000 7.64 0.00 0.00 5.92
3846 4025 3.692998 TTTTTGTGATGATCGGCGC 57.307 47.368 0.00 0.00 0.00 6.53
3861 4040 4.814234 GGAAAAACAATTCCGCCTCTTTTT 59.186 37.500 0.00 0.00 39.54 1.94
3862 4041 4.377021 GGAAAAACAATTCCGCCTCTTTT 58.623 39.130 0.00 0.00 39.54 2.27
3863 4042 3.990092 GGAAAAACAATTCCGCCTCTTT 58.010 40.909 0.00 0.00 39.54 2.52
3864 4043 3.660501 GGAAAAACAATTCCGCCTCTT 57.339 42.857 0.00 0.00 39.54 2.85
3872 4051 8.216453 CGATTTTGTGATCAGGAAAAACAATTC 58.784 33.333 13.80 7.85 31.34 2.17
3873 4052 7.171337 CCGATTTTGTGATCAGGAAAAACAATT 59.829 33.333 13.80 1.47 31.34 2.32
3874 4053 6.646240 CCGATTTTGTGATCAGGAAAAACAAT 59.354 34.615 13.80 1.76 31.34 2.71
3875 4054 5.982516 CCGATTTTGTGATCAGGAAAAACAA 59.017 36.000 13.80 3.33 0.00 2.83
3876 4055 5.527951 CCGATTTTGTGATCAGGAAAAACA 58.472 37.500 13.80 0.00 0.00 2.83
3877 4056 4.385748 GCCGATTTTGTGATCAGGAAAAAC 59.614 41.667 13.80 11.18 0.00 2.43
3878 4057 4.038522 TGCCGATTTTGTGATCAGGAAAAA 59.961 37.500 13.80 12.54 0.00 1.94
3879 4058 3.571828 TGCCGATTTTGTGATCAGGAAAA 59.428 39.130 12.68 12.68 0.00 2.29
3880 4059 3.153130 TGCCGATTTTGTGATCAGGAAA 58.847 40.909 0.00 0.37 0.00 3.13
3881 4060 2.789213 TGCCGATTTTGTGATCAGGAA 58.211 42.857 0.00 0.00 0.00 3.36
3882 4061 2.488204 TGCCGATTTTGTGATCAGGA 57.512 45.000 0.00 0.00 0.00 3.86
3883 4062 3.788333 AATGCCGATTTTGTGATCAGG 57.212 42.857 0.00 0.00 0.00 3.86
3884 4063 5.669357 GCAAAAATGCCGATTTTGTGATCAG 60.669 40.000 15.61 0.00 45.24 2.90
3885 4064 4.152045 GCAAAAATGCCGATTTTGTGATCA 59.848 37.500 15.61 0.00 45.24 2.92
3886 4065 4.435917 GGCAAAAATGCCGATTTTGTGATC 60.436 41.667 15.61 0.00 45.24 2.92
3887 4066 3.436359 GGCAAAAATGCCGATTTTGTGAT 59.564 39.130 15.61 0.00 45.24 3.06
3888 4067 2.805099 GGCAAAAATGCCGATTTTGTGA 59.195 40.909 15.61 0.00 45.24 3.58
3889 4068 3.186062 GGCAAAAATGCCGATTTTGTG 57.814 42.857 15.61 8.89 45.24 3.33
3899 4078 0.671472 GTCTGGCAGGGCAAAAATGC 60.671 55.000 15.73 0.00 39.25 3.56
3900 4079 0.037046 GGTCTGGCAGGGCAAAAATG 60.037 55.000 15.73 0.00 0.00 2.32
3901 4080 1.535204 CGGTCTGGCAGGGCAAAAAT 61.535 55.000 15.73 0.00 0.00 1.82
3902 4081 2.199652 CGGTCTGGCAGGGCAAAAA 61.200 57.895 15.73 0.00 0.00 1.94
3903 4082 2.597217 CGGTCTGGCAGGGCAAAA 60.597 61.111 15.73 0.00 0.00 2.44
3904 4083 4.659172 CCGGTCTGGCAGGGCAAA 62.659 66.667 15.73 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.