Multiple sequence alignment - TraesCS5A01G329500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G329500 chr5A 100.000 3758 0 0 1 3758 538348055 538351812 0.000000e+00 6940.0
1 TraesCS5A01G329500 chr5A 86.179 1751 235 6 998 2743 138430582 138428834 0.000000e+00 1886.0
2 TraesCS5A01G329500 chr5A 84.416 77 8 4 3673 3748 624761255 624761182 5.210000e-09 73.1
3 TraesCS5A01G329500 chr5B 92.546 2227 145 15 897 3111 513711358 513713575 0.000000e+00 3173.0
4 TraesCS5A01G329500 chr5B 92.275 1864 129 10 897 2758 513646987 513648837 0.000000e+00 2630.0
5 TraesCS5A01G329500 chr5B 85.338 1862 246 20 906 2760 137112806 137110965 0.000000e+00 1901.0
6 TraesCS5A01G329500 chr5B 84.788 401 29 7 149 530 513646057 513646444 1.270000e-99 374.0
7 TraesCS5A01G329500 chr5B 86.923 260 14 6 586 844 513646747 513646987 1.330000e-69 274.0
8 TraesCS5A01G329500 chr5B 82.941 340 23 9 2789 3112 513648974 513649294 1.330000e-69 274.0
9 TraesCS5A01G329500 chr5B 93.750 160 10 0 585 744 513710595 513710754 1.350000e-59 241.0
10 TraesCS5A01G329500 chr5B 93.333 135 9 0 6 140 513634176 513634310 2.290000e-47 200.0
11 TraesCS5A01G329500 chr5D 93.646 1983 108 9 897 2875 424596818 424598786 0.000000e+00 2948.0
12 TraesCS5A01G329500 chr5D 85.419 871 92 14 2904 3750 424598888 424599747 0.000000e+00 872.0
13 TraesCS5A01G329500 chr5D 82.043 646 42 24 225 844 424596221 424596818 2.030000e-132 483.0
14 TraesCS5A01G329500 chr5D 91.617 167 9 2 39 203 424588414 424588577 3.780000e-55 226.0
15 TraesCS5A01G329500 chr5D 77.273 176 31 7 3584 3755 43081219 43081389 1.110000e-15 95.3
16 TraesCS5A01G329500 chr5D 93.750 48 2 1 3114 3161 230411694 230411740 1.870000e-08 71.3
17 TraesCS5A01G329500 chr7D 82.636 1722 270 17 1051 2761 531977412 531975709 0.000000e+00 1496.0
18 TraesCS5A01G329500 chr7D 81.613 1724 307 7 1001 2716 193935005 193936726 0.000000e+00 1419.0
19 TraesCS5A01G329500 chr7D 81.097 1714 304 17 1042 2742 84422143 84420437 0.000000e+00 1352.0
20 TraesCS5A01G329500 chr7B 82.568 1721 271 17 1051 2761 572507611 572505910 0.000000e+00 1489.0
21 TraesCS5A01G329500 chr7B 80.993 1752 321 9 1001 2743 34168242 34169990 0.000000e+00 1380.0
22 TraesCS5A01G329500 chr1A 82.500 1720 271 26 1020 2727 443870082 443871783 0.000000e+00 1482.0
23 TraesCS5A01G329500 chr1B 81.955 1729 286 24 1013 2728 465964640 465966355 0.000000e+00 1441.0
24 TraesCS5A01G329500 chr1B 72.508 331 76 11 3425 3746 470643309 470643633 4.000000e-15 93.5
25 TraesCS5A01G329500 chr1B 97.436 39 1 0 3113 3151 682095393 682095431 2.420000e-07 67.6
26 TraesCS5A01G329500 chr1D 82.035 1720 279 26 1020 2727 344284142 344285843 0.000000e+00 1437.0
27 TraesCS5A01G329500 chr1D 73.312 311 64 17 3428 3736 110021376 110021669 3.090000e-16 97.1
28 TraesCS5A01G329500 chr7A 81.116 1075 190 11 1676 2742 612532264 612531195 0.000000e+00 848.0
29 TraesCS5A01G329500 chr7A 93.478 46 2 1 3111 3155 430781550 430781505 2.420000e-07 67.6
30 TraesCS5A01G329500 chr7A 95.349 43 1 1 3110 3151 732513975 732514017 2.420000e-07 67.6
31 TraesCS5A01G329500 chr6D 95.556 45 2 0 3110 3154 157587498 157587454 5.210000e-09 73.1
32 TraesCS5A01G329500 chr6B 91.837 49 4 0 3107 3155 474440002 474440050 6.740000e-08 69.4
33 TraesCS5A01G329500 chr6B 97.436 39 1 0 3113 3151 675187827 675187865 2.420000e-07 67.6
34 TraesCS5A01G329500 chr2D 91.837 49 4 0 3107 3155 381801247 381801199 6.740000e-08 69.4
35 TraesCS5A01G329500 chr2A 88.235 51 5 1 3105 3154 767057427 767057377 4.050000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G329500 chr5A 538348055 538351812 3757 False 6940.000000 6940 100.00000 1 3758 1 chr5A.!!$F1 3757
1 TraesCS5A01G329500 chr5A 138428834 138430582 1748 True 1886.000000 1886 86.17900 998 2743 1 chr5A.!!$R1 1745
2 TraesCS5A01G329500 chr5B 137110965 137112806 1841 True 1901.000000 1901 85.33800 906 2760 1 chr5B.!!$R1 1854
3 TraesCS5A01G329500 chr5B 513710595 513713575 2980 False 1707.000000 3173 93.14800 585 3111 2 chr5B.!!$F3 2526
4 TraesCS5A01G329500 chr5B 513646057 513649294 3237 False 888.000000 2630 86.73175 149 3112 4 chr5B.!!$F2 2963
5 TraesCS5A01G329500 chr5D 424596221 424599747 3526 False 1434.333333 2948 87.03600 225 3750 3 chr5D.!!$F4 3525
6 TraesCS5A01G329500 chr7D 531975709 531977412 1703 True 1496.000000 1496 82.63600 1051 2761 1 chr7D.!!$R2 1710
7 TraesCS5A01G329500 chr7D 193935005 193936726 1721 False 1419.000000 1419 81.61300 1001 2716 1 chr7D.!!$F1 1715
8 TraesCS5A01G329500 chr7D 84420437 84422143 1706 True 1352.000000 1352 81.09700 1042 2742 1 chr7D.!!$R1 1700
9 TraesCS5A01G329500 chr7B 572505910 572507611 1701 True 1489.000000 1489 82.56800 1051 2761 1 chr7B.!!$R1 1710
10 TraesCS5A01G329500 chr7B 34168242 34169990 1748 False 1380.000000 1380 80.99300 1001 2743 1 chr7B.!!$F1 1742
11 TraesCS5A01G329500 chr1A 443870082 443871783 1701 False 1482.000000 1482 82.50000 1020 2727 1 chr1A.!!$F1 1707
12 TraesCS5A01G329500 chr1B 465964640 465966355 1715 False 1441.000000 1441 81.95500 1013 2728 1 chr1B.!!$F1 1715
13 TraesCS5A01G329500 chr1D 344284142 344285843 1701 False 1437.000000 1437 82.03500 1020 2727 1 chr1D.!!$F2 1707
14 TraesCS5A01G329500 chr7A 612531195 612532264 1069 True 848.000000 848 81.11600 1676 2742 1 chr7A.!!$R2 1066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.109597 CGAAGCATTGACCTGCAACC 60.110 55.0 0.00 0.00 44.77 3.77 F
78 79 0.114954 ATTGACCTGCAACCACCCAT 59.885 50.0 0.00 0.00 39.78 4.00 F
921 1715 0.389391 CCGCGAGACCATGACCTTAT 59.611 55.0 8.23 0.00 0.00 1.73 F
973 1767 0.838554 TACAACCCCAGGCTGCAGTA 60.839 55.0 16.64 4.02 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 2585 0.872881 GCCACGTTATGTCGCCGTAT 60.873 55.000 0.0 0.0 32.81 3.06 R
2098 2904 0.824109 TCTGGGCTATTGAGACACGG 59.176 55.000 0.0 0.0 28.74 4.94 R
2553 3359 1.002274 GGAGAAGAGCCCCTCTGGA 59.998 63.158 0.0 0.0 40.28 3.86 R
2798 3710 1.002792 GTCCGACAAGCAACCAGAAAC 60.003 52.381 0.0 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.919666 AACCGCACAATCATGCTAAC 57.080 45.000 0.00 0.00 43.80 2.34
20 21 1.819928 ACCGCACAATCATGCTAACA 58.180 45.000 0.00 0.00 43.80 2.41
21 22 1.468520 ACCGCACAATCATGCTAACAC 59.531 47.619 0.00 0.00 43.80 3.32
22 23 1.468127 CCGCACAATCATGCTAACACA 59.532 47.619 0.00 0.00 43.80 3.72
23 24 2.097954 CCGCACAATCATGCTAACACAT 59.902 45.455 0.00 0.00 43.80 3.21
24 25 3.312146 CCGCACAATCATGCTAACACATA 59.688 43.478 0.00 0.00 43.80 2.29
25 26 4.521010 CGCACAATCATGCTAACACATAG 58.479 43.478 0.00 0.00 43.80 2.23
26 27 4.034394 CGCACAATCATGCTAACACATAGT 59.966 41.667 0.00 0.00 43.80 2.12
27 28 5.447683 CGCACAATCATGCTAACACATAGTT 60.448 40.000 0.00 0.00 43.80 2.24
28 29 5.967674 GCACAATCATGCTAACACATAGTTC 59.032 40.000 0.00 0.00 42.62 3.01
29 30 6.403527 GCACAATCATGCTAACACATAGTTCA 60.404 38.462 0.00 0.00 42.62 3.18
30 31 7.184779 CACAATCATGCTAACACATAGTTCAG 58.815 38.462 0.00 0.00 41.64 3.02
31 32 6.881065 ACAATCATGCTAACACATAGTTCAGT 59.119 34.615 0.00 0.00 41.64 3.41
32 33 6.915544 ATCATGCTAACACATAGTTCAGTG 57.084 37.500 0.00 0.00 41.64 3.66
33 34 5.178061 TCATGCTAACACATAGTTCAGTGG 58.822 41.667 0.00 0.00 41.64 4.00
34 35 4.882842 TGCTAACACATAGTTCAGTGGA 57.117 40.909 0.00 0.00 41.64 4.02
35 36 4.566004 TGCTAACACATAGTTCAGTGGAC 58.434 43.478 0.00 0.00 41.64 4.02
36 37 3.933332 GCTAACACATAGTTCAGTGGACC 59.067 47.826 0.00 0.00 41.64 4.46
37 38 4.322801 GCTAACACATAGTTCAGTGGACCT 60.323 45.833 0.00 0.00 41.64 3.85
38 39 4.706842 AACACATAGTTCAGTGGACCTT 57.293 40.909 0.00 0.00 39.99 3.50
39 40 4.706842 ACACATAGTTCAGTGGACCTTT 57.293 40.909 0.00 0.00 39.99 3.11
40 41 5.048846 ACACATAGTTCAGTGGACCTTTT 57.951 39.130 0.00 0.00 39.99 2.27
41 42 4.821805 ACACATAGTTCAGTGGACCTTTTG 59.178 41.667 0.00 0.00 39.99 2.44
42 43 5.063204 CACATAGTTCAGTGGACCTTTTGA 58.937 41.667 0.00 0.00 32.24 2.69
43 44 5.707298 CACATAGTTCAGTGGACCTTTTGAT 59.293 40.000 0.00 0.00 32.24 2.57
44 45 6.207417 CACATAGTTCAGTGGACCTTTTGATT 59.793 38.462 0.00 0.00 32.24 2.57
45 46 6.777580 ACATAGTTCAGTGGACCTTTTGATTT 59.222 34.615 0.00 0.00 0.00 2.17
46 47 7.287696 ACATAGTTCAGTGGACCTTTTGATTTT 59.712 33.333 0.00 0.00 0.00 1.82
47 48 6.544928 AGTTCAGTGGACCTTTTGATTTTT 57.455 33.333 0.00 0.00 0.00 1.94
48 49 6.340522 AGTTCAGTGGACCTTTTGATTTTTG 58.659 36.000 0.00 0.00 0.00 2.44
49 50 6.154363 AGTTCAGTGGACCTTTTGATTTTTGA 59.846 34.615 0.00 0.00 0.00 2.69
50 51 6.729690 TCAGTGGACCTTTTGATTTTTGAT 57.270 33.333 0.00 0.00 0.00 2.57
51 52 7.123355 TCAGTGGACCTTTTGATTTTTGATT 57.877 32.000 0.00 0.00 0.00 2.57
52 53 7.563906 TCAGTGGACCTTTTGATTTTTGATTT 58.436 30.769 0.00 0.00 0.00 2.17
53 54 7.710475 TCAGTGGACCTTTTGATTTTTGATTTC 59.290 33.333 0.00 0.00 0.00 2.17
54 55 6.701400 AGTGGACCTTTTGATTTTTGATTTCG 59.299 34.615 0.00 0.00 0.00 3.46
55 56 6.699642 GTGGACCTTTTGATTTTTGATTTCGA 59.300 34.615 0.00 0.00 0.00 3.71
56 57 7.223777 GTGGACCTTTTGATTTTTGATTTCGAA 59.776 33.333 0.00 0.00 0.00 3.71
57 58 7.437862 TGGACCTTTTGATTTTTGATTTCGAAG 59.562 33.333 0.00 0.00 0.00 3.79
58 59 7.177498 ACCTTTTGATTTTTGATTTCGAAGC 57.823 32.000 0.00 0.00 0.00 3.86
59 60 6.760770 ACCTTTTGATTTTTGATTTCGAAGCA 59.239 30.769 0.00 0.00 0.00 3.91
60 61 7.442062 ACCTTTTGATTTTTGATTTCGAAGCAT 59.558 29.630 0.00 0.00 0.00 3.79
61 62 8.284693 CCTTTTGATTTTTGATTTCGAAGCATT 58.715 29.630 0.00 0.00 0.00 3.56
62 63 8.990722 TTTTGATTTTTGATTTCGAAGCATTG 57.009 26.923 0.00 0.00 0.00 2.82
63 64 7.943413 TTGATTTTTGATTTCGAAGCATTGA 57.057 28.000 0.00 0.00 0.00 2.57
64 65 7.337150 TGATTTTTGATTTCGAAGCATTGAC 57.663 32.000 0.00 0.00 0.00 3.18
65 66 6.365789 TGATTTTTGATTTCGAAGCATTGACC 59.634 34.615 0.00 0.00 0.00 4.02
66 67 5.452078 TTTTGATTTCGAAGCATTGACCT 57.548 34.783 0.00 0.00 0.00 3.85
67 68 4.424061 TTGATTTCGAAGCATTGACCTG 57.576 40.909 0.00 0.00 0.00 4.00
68 69 2.162208 TGATTTCGAAGCATTGACCTGC 59.838 45.455 0.00 0.00 42.62 4.85
69 70 1.603456 TTTCGAAGCATTGACCTGCA 58.397 45.000 0.00 0.00 44.77 4.41
70 71 1.603456 TTCGAAGCATTGACCTGCAA 58.397 45.000 0.00 0.00 44.77 4.08
71 72 0.874390 TCGAAGCATTGACCTGCAAC 59.126 50.000 0.00 0.00 44.77 4.17
72 73 0.109597 CGAAGCATTGACCTGCAACC 60.110 55.000 0.00 0.00 44.77 3.77
73 74 0.961019 GAAGCATTGACCTGCAACCA 59.039 50.000 0.00 0.00 44.77 3.67
74 75 0.675633 AAGCATTGACCTGCAACCAC 59.324 50.000 0.00 0.00 44.77 4.16
75 76 1.181098 AGCATTGACCTGCAACCACC 61.181 55.000 0.00 0.00 44.77 4.61
76 77 1.966762 CATTGACCTGCAACCACCC 59.033 57.895 0.00 0.00 39.78 4.61
77 78 0.827089 CATTGACCTGCAACCACCCA 60.827 55.000 0.00 0.00 39.78 4.51
78 79 0.114954 ATTGACCTGCAACCACCCAT 59.885 50.000 0.00 0.00 39.78 4.00
79 80 0.774276 TTGACCTGCAACCACCCATA 59.226 50.000 0.00 0.00 0.00 2.74
80 81 0.774276 TGACCTGCAACCACCCATAA 59.226 50.000 0.00 0.00 0.00 1.90
81 82 1.145945 TGACCTGCAACCACCCATAAA 59.854 47.619 0.00 0.00 0.00 1.40
82 83 2.243810 GACCTGCAACCACCCATAAAA 58.756 47.619 0.00 0.00 0.00 1.52
83 84 2.231235 GACCTGCAACCACCCATAAAAG 59.769 50.000 0.00 0.00 0.00 2.27
84 85 2.158385 ACCTGCAACCACCCATAAAAGA 60.158 45.455 0.00 0.00 0.00 2.52
85 86 3.099141 CCTGCAACCACCCATAAAAGAT 58.901 45.455 0.00 0.00 0.00 2.40
86 87 4.264172 ACCTGCAACCACCCATAAAAGATA 60.264 41.667 0.00 0.00 0.00 1.98
87 88 4.339247 CCTGCAACCACCCATAAAAGATAG 59.661 45.833 0.00 0.00 0.00 2.08
88 89 3.699038 TGCAACCACCCATAAAAGATAGC 59.301 43.478 0.00 0.00 0.00 2.97
89 90 3.068165 GCAACCACCCATAAAAGATAGCC 59.932 47.826 0.00 0.00 0.00 3.93
90 91 4.277476 CAACCACCCATAAAAGATAGCCA 58.723 43.478 0.00 0.00 0.00 4.75
91 92 4.601406 ACCACCCATAAAAGATAGCCAA 57.399 40.909 0.00 0.00 0.00 4.52
92 93 4.278310 ACCACCCATAAAAGATAGCCAAC 58.722 43.478 0.00 0.00 0.00 3.77
93 94 3.636764 CCACCCATAAAAGATAGCCAACC 59.363 47.826 0.00 0.00 0.00 3.77
94 95 4.536765 CACCCATAAAAGATAGCCAACCT 58.463 43.478 0.00 0.00 0.00 3.50
95 96 5.398581 CCACCCATAAAAGATAGCCAACCTA 60.399 44.000 0.00 0.00 0.00 3.08
96 97 5.765182 CACCCATAAAAGATAGCCAACCTAG 59.235 44.000 0.00 0.00 0.00 3.02
97 98 5.670361 ACCCATAAAAGATAGCCAACCTAGA 59.330 40.000 0.00 0.00 0.00 2.43
98 99 6.183361 ACCCATAAAAGATAGCCAACCTAGAG 60.183 42.308 0.00 0.00 0.00 2.43
99 100 6.234177 CCATAAAAGATAGCCAACCTAGAGG 58.766 44.000 0.00 0.00 42.17 3.69
100 101 6.043243 CCATAAAAGATAGCCAACCTAGAGGA 59.957 42.308 1.60 0.00 38.94 3.71
101 102 7.256835 CCATAAAAGATAGCCAACCTAGAGGAT 60.257 40.741 1.60 0.00 38.94 3.24
102 103 8.816894 CATAAAAGATAGCCAACCTAGAGGATA 58.183 37.037 1.60 0.00 38.94 2.59
103 104 7.691993 AAAAGATAGCCAACCTAGAGGATAA 57.308 36.000 1.60 0.00 38.94 1.75
104 105 6.926630 AAGATAGCCAACCTAGAGGATAAG 57.073 41.667 1.60 0.00 38.94 1.73
105 106 5.337788 AGATAGCCAACCTAGAGGATAAGG 58.662 45.833 1.60 0.00 38.94 2.69
107 108 3.310193 AGCCAACCTAGAGGATAAGGTC 58.690 50.000 1.60 0.00 45.51 3.85
108 109 2.036089 GCCAACCTAGAGGATAAGGTCG 59.964 54.545 1.60 0.00 45.51 4.79
109 110 3.297736 CCAACCTAGAGGATAAGGTCGT 58.702 50.000 1.60 0.00 45.51 4.34
110 111 3.705072 CCAACCTAGAGGATAAGGTCGTT 59.295 47.826 1.60 0.00 45.51 3.85
111 112 4.441634 CCAACCTAGAGGATAAGGTCGTTG 60.442 50.000 1.60 0.00 45.51 4.10
112 113 4.246712 ACCTAGAGGATAAGGTCGTTGA 57.753 45.455 1.60 0.00 42.60 3.18
113 114 4.805744 ACCTAGAGGATAAGGTCGTTGAT 58.194 43.478 1.60 0.00 42.60 2.57
114 115 4.585162 ACCTAGAGGATAAGGTCGTTGATG 59.415 45.833 1.60 0.00 42.60 3.07
115 116 4.827835 CCTAGAGGATAAGGTCGTTGATGA 59.172 45.833 0.00 0.00 37.39 2.92
116 117 5.302059 CCTAGAGGATAAGGTCGTTGATGAA 59.698 44.000 0.00 0.00 37.39 2.57
117 118 5.269505 AGAGGATAAGGTCGTTGATGAAG 57.730 43.478 0.00 0.00 0.00 3.02
118 119 4.712337 AGAGGATAAGGTCGTTGATGAAGT 59.288 41.667 0.00 0.00 0.00 3.01
119 120 5.187967 AGAGGATAAGGTCGTTGATGAAGTT 59.812 40.000 0.00 0.00 0.00 2.66
120 121 5.420409 AGGATAAGGTCGTTGATGAAGTTC 58.580 41.667 0.00 0.00 0.00 3.01
121 122 5.187967 AGGATAAGGTCGTTGATGAAGTTCT 59.812 40.000 4.17 0.00 0.00 3.01
122 123 5.875359 GGATAAGGTCGTTGATGAAGTTCTT 59.125 40.000 4.17 0.00 0.00 2.52
123 124 7.039882 GGATAAGGTCGTTGATGAAGTTCTTA 58.960 38.462 4.17 0.00 0.00 2.10
124 125 7.222999 GGATAAGGTCGTTGATGAAGTTCTTAG 59.777 40.741 4.17 0.00 0.00 2.18
125 126 5.470047 AGGTCGTTGATGAAGTTCTTAGT 57.530 39.130 4.17 0.00 0.00 2.24
126 127 5.230942 AGGTCGTTGATGAAGTTCTTAGTG 58.769 41.667 4.17 0.00 0.00 2.74
127 128 5.010719 AGGTCGTTGATGAAGTTCTTAGTGA 59.989 40.000 4.17 0.00 0.00 3.41
128 129 5.869888 GGTCGTTGATGAAGTTCTTAGTGAT 59.130 40.000 4.17 0.00 0.00 3.06
129 130 7.033791 GGTCGTTGATGAAGTTCTTAGTGATA 58.966 38.462 4.17 0.00 0.00 2.15
130 131 7.009357 GGTCGTTGATGAAGTTCTTAGTGATAC 59.991 40.741 4.17 0.00 0.00 2.24
131 132 7.541091 GTCGTTGATGAAGTTCTTAGTGATACA 59.459 37.037 4.17 0.00 0.00 2.29
132 133 8.085909 TCGTTGATGAAGTTCTTAGTGATACAA 58.914 33.333 4.17 0.00 0.00 2.41
133 134 8.376203 CGTTGATGAAGTTCTTAGTGATACAAG 58.624 37.037 4.17 0.00 0.00 3.16
134 135 7.834068 TGATGAAGTTCTTAGTGATACAAGC 57.166 36.000 4.17 0.00 0.00 4.01
135 136 6.818644 TGATGAAGTTCTTAGTGATACAAGCC 59.181 38.462 4.17 0.00 0.00 4.35
136 137 5.488341 TGAAGTTCTTAGTGATACAAGCCC 58.512 41.667 4.17 0.00 0.00 5.19
137 138 5.248477 TGAAGTTCTTAGTGATACAAGCCCT 59.752 40.000 4.17 0.00 0.00 5.19
138 139 5.763876 AGTTCTTAGTGATACAAGCCCTT 57.236 39.130 0.00 0.00 0.00 3.95
139 140 6.128138 AGTTCTTAGTGATACAAGCCCTTT 57.872 37.500 0.00 0.00 0.00 3.11
140 141 5.940470 AGTTCTTAGTGATACAAGCCCTTTG 59.060 40.000 0.00 0.00 42.68 2.77
141 142 4.843728 TCTTAGTGATACAAGCCCTTTGG 58.156 43.478 0.00 0.00 41.25 3.28
159 160 7.047891 CCCTTTGGCTTTAATTAGGAAAATCC 58.952 38.462 0.00 0.00 36.58 3.01
166 167 7.417003 GGCTTTAATTAGGAAAATCCGGCTAAA 60.417 37.037 0.00 0.00 42.75 1.85
167 168 7.434307 GCTTTAATTAGGAAAATCCGGCTAAAC 59.566 37.037 0.00 0.00 42.75 2.01
176 177 6.019075 GGAAAATCCGGCTAAACAAATTATGC 60.019 38.462 0.00 0.00 0.00 3.14
183 184 6.370593 CGGCTAAACAAATTATGCGACATAT 58.629 36.000 0.00 0.00 0.00 1.78
284 285 4.154942 ACAAACTTTCAGCCAGATGGATT 58.845 39.130 2.18 0.00 37.39 3.01
285 286 4.021719 ACAAACTTTCAGCCAGATGGATTG 60.022 41.667 2.18 0.31 37.39 2.67
296 297 3.828451 CCAGATGGATTGAAAACCACACT 59.172 43.478 0.00 0.00 39.06 3.55
314 315 7.551585 ACCACACTATTATGCTATCATAGAGC 58.448 38.462 0.00 0.00 36.60 4.09
381 401 2.762535 AGACAGGATAACGTTGGTGG 57.237 50.000 11.99 0.00 0.00 4.61
401 421 2.350964 GGCGAAGTTTTTGGCGATACAA 60.351 45.455 0.00 0.00 38.73 2.41
404 424 3.608241 CGAAGTTTTTGGCGATACAAGCA 60.608 43.478 0.00 0.00 36.08 3.91
409 429 2.987413 TTGGCGATACAAGCACTTTG 57.013 45.000 0.00 0.00 42.68 2.77
444 467 1.633432 CCTGTACCTGGGTGATGGAAA 59.367 52.381 2.07 0.00 0.00 3.13
461 484 6.379417 TGATGGAAATTTGTGGCATACATGTA 59.621 34.615 8.27 8.27 39.48 2.29
513 536 2.807108 GCTCCAGTAATCTAAAGCCGGG 60.807 54.545 2.18 0.00 0.00 5.73
514 537 1.140252 TCCAGTAATCTAAAGCCGGGC 59.860 52.381 12.11 12.11 0.00 6.13
516 539 1.117150 AGTAATCTAAAGCCGGGCGA 58.883 50.000 14.39 4.97 0.00 5.54
625 895 2.244695 TGAGTTCGAAGCCTTGACCTA 58.755 47.619 0.00 0.00 0.00 3.08
648 918 1.064017 ACCACCCAGAAAAAGACAGCA 60.064 47.619 0.00 0.00 0.00 4.41
695 966 4.632538 ATGTTTTTAGCGATACAAGCCC 57.367 40.909 0.00 0.00 34.64 5.19
715 986 4.403734 CCCTTTAGCCCTTAGAAACACAA 58.596 43.478 0.00 0.00 0.00 3.33
753 1024 7.573968 ATGTAGAAAATTAAGATGGCACCTC 57.426 36.000 0.00 0.00 0.00 3.85
754 1025 6.721318 TGTAGAAAATTAAGATGGCACCTCT 58.279 36.000 0.00 0.00 0.00 3.69
755 1026 7.175104 TGTAGAAAATTAAGATGGCACCTCTT 58.825 34.615 8.31 8.31 36.87 2.85
756 1027 6.521151 AGAAAATTAAGATGGCACCTCTTG 57.479 37.500 12.48 0.00 34.81 3.02
764 1035 3.987404 GCACCTCTTGCGTCCATT 58.013 55.556 0.00 0.00 42.79 3.16
765 1036 1.796796 GCACCTCTTGCGTCCATTC 59.203 57.895 0.00 0.00 42.79 2.67
766 1037 1.970917 GCACCTCTTGCGTCCATTCG 61.971 60.000 0.00 0.00 42.79 3.34
795 1404 4.983628 ACAGCGAGCTTCTCTGTG 57.016 55.556 13.38 0.00 40.53 3.66
824 1618 9.541143 TTCACTTATATTGAACTCATATTCGCA 57.459 29.630 0.00 0.00 0.00 5.10
827 1621 7.652105 ACTTATATTGAACTCATATTCGCACGT 59.348 33.333 0.00 0.00 0.00 4.49
833 1627 2.855963 ACTCATATTCGCACGTAAACGG 59.144 45.455 7.50 0.00 44.95 4.44
844 1638 2.485038 CACGTAAACGGGCAAGGTTTAT 59.515 45.455 7.50 0.00 44.95 1.40
845 1639 3.683822 CACGTAAACGGGCAAGGTTTATA 59.316 43.478 7.50 0.00 44.95 0.98
846 1640 4.333372 CACGTAAACGGGCAAGGTTTATAT 59.667 41.667 7.50 0.00 44.95 0.86
847 1641 5.523188 CACGTAAACGGGCAAGGTTTATATA 59.477 40.000 7.50 0.00 44.95 0.86
849 1643 5.754890 CGTAAACGGGCAAGGTTTATATAGT 59.245 40.000 9.81 0.00 40.69 2.12
850 1644 6.292488 CGTAAACGGGCAAGGTTTATATAGTG 60.292 42.308 9.81 0.00 40.69 2.74
851 1645 5.362105 AACGGGCAAGGTTTATATAGTGA 57.638 39.130 0.00 0.00 0.00 3.41
852 1646 5.362105 ACGGGCAAGGTTTATATAGTGAA 57.638 39.130 0.00 0.00 0.00 3.18
854 1648 5.104652 ACGGGCAAGGTTTATATAGTGAAGT 60.105 40.000 0.00 0.00 0.00 3.01
855 1649 5.465724 CGGGCAAGGTTTATATAGTGAAGTC 59.534 44.000 0.00 0.00 0.00 3.01
857 1651 6.483640 GGGCAAGGTTTATATAGTGAAGTCAG 59.516 42.308 0.00 0.00 0.00 3.51
858 1652 7.272978 GGCAAGGTTTATATAGTGAAGTCAGA 58.727 38.462 0.00 0.00 0.00 3.27
859 1653 7.224949 GGCAAGGTTTATATAGTGAAGTCAGAC 59.775 40.741 0.00 0.00 0.00 3.51
860 1654 7.982354 GCAAGGTTTATATAGTGAAGTCAGACT 59.018 37.037 0.00 0.00 0.00 3.24
861 1655 9.522804 CAAGGTTTATATAGTGAAGTCAGACTC 57.477 37.037 2.72 0.00 0.00 3.36
862 1656 8.240267 AGGTTTATATAGTGAAGTCAGACTCC 57.760 38.462 2.72 0.00 0.00 3.85
863 1657 7.839705 AGGTTTATATAGTGAAGTCAGACTCCA 59.160 37.037 2.72 0.00 0.00 3.86
864 1658 8.475639 GGTTTATATAGTGAAGTCAGACTCCAA 58.524 37.037 2.72 0.00 0.00 3.53
865 1659 9.303537 GTTTATATAGTGAAGTCAGACTCCAAC 57.696 37.037 2.72 2.99 0.00 3.77
866 1660 8.824756 TTATATAGTGAAGTCAGACTCCAACT 57.175 34.615 2.72 10.22 0.00 3.16
867 1661 7.726033 ATATAGTGAAGTCAGACTCCAACTT 57.274 36.000 14.67 8.16 36.00 2.66
868 1662 4.065321 AGTGAAGTCAGACTCCAACTTG 57.935 45.455 2.72 0.00 33.54 3.16
869 1663 3.706594 AGTGAAGTCAGACTCCAACTTGA 59.293 43.478 2.72 0.00 33.54 3.02
870 1664 4.054671 GTGAAGTCAGACTCCAACTTGAG 58.945 47.826 2.72 0.00 33.54 3.02
872 1666 4.893524 TGAAGTCAGACTCCAACTTGAGTA 59.106 41.667 2.72 0.00 45.41 2.59
873 1667 5.010112 TGAAGTCAGACTCCAACTTGAGTAG 59.990 44.000 2.72 0.00 45.41 2.57
874 1668 3.829601 AGTCAGACTCCAACTTGAGTAGG 59.170 47.826 0.00 0.00 45.41 3.18
875 1669 3.827302 GTCAGACTCCAACTTGAGTAGGA 59.173 47.826 0.00 0.00 45.41 2.94
876 1670 4.464597 GTCAGACTCCAACTTGAGTAGGAT 59.535 45.833 0.00 0.00 45.41 3.24
877 1671 4.707448 TCAGACTCCAACTTGAGTAGGATC 59.293 45.833 0.00 0.00 45.41 3.36
878 1672 4.027437 AGACTCCAACTTGAGTAGGATCC 58.973 47.826 2.48 2.48 45.41 3.36
879 1673 3.769844 GACTCCAACTTGAGTAGGATCCA 59.230 47.826 15.82 0.00 45.41 3.41
880 1674 4.168101 ACTCCAACTTGAGTAGGATCCAA 58.832 43.478 15.82 0.00 43.65 3.53
881 1675 4.223923 ACTCCAACTTGAGTAGGATCCAAG 59.776 45.833 15.82 10.76 43.65 3.61
887 1681 5.675538 ACTTGAGTAGGATCCAAGTTATGC 58.324 41.667 15.82 0.00 45.59 3.14
888 1682 5.189736 ACTTGAGTAGGATCCAAGTTATGCA 59.810 40.000 15.82 0.00 45.59 3.96
889 1683 5.894298 TGAGTAGGATCCAAGTTATGCAT 57.106 39.130 15.82 3.79 0.00 3.96
890 1684 5.614308 TGAGTAGGATCCAAGTTATGCATG 58.386 41.667 15.82 0.00 0.00 4.06
891 1685 4.392940 AGTAGGATCCAAGTTATGCATGC 58.607 43.478 15.82 11.82 0.00 4.06
892 1686 3.301794 AGGATCCAAGTTATGCATGCA 57.698 42.857 25.04 25.04 0.00 3.96
893 1687 3.840991 AGGATCCAAGTTATGCATGCAT 58.159 40.909 33.92 33.92 40.19 3.96
894 1688 3.572682 AGGATCCAAGTTATGCATGCATG 59.427 43.478 37.43 24.23 37.82 4.06
904 1698 4.840288 CATGCATGCACCACGCCG 62.840 66.667 25.37 1.67 41.33 6.46
921 1715 0.389391 CCGCGAGACCATGACCTTAT 59.611 55.000 8.23 0.00 0.00 1.73
967 1761 1.509548 ATTGGCTACAACCCCAGGCT 61.510 55.000 0.00 0.00 39.87 4.58
968 1762 2.044946 GGCTACAACCCCAGGCTG 60.045 66.667 7.75 7.75 34.66 4.85
970 1764 2.756400 CTACAACCCCAGGCTGCA 59.244 61.111 9.56 0.00 0.00 4.41
971 1765 1.377725 CTACAACCCCAGGCTGCAG 60.378 63.158 10.11 10.11 0.00 4.41
972 1766 2.129555 CTACAACCCCAGGCTGCAGT 62.130 60.000 16.64 5.33 0.00 4.40
973 1767 0.838554 TACAACCCCAGGCTGCAGTA 60.839 55.000 16.64 4.02 0.00 2.74
986 1780 3.444703 CTGCAGTACAGGTATCCAGTC 57.555 52.381 5.25 0.00 43.19 3.51
989 1783 3.195610 TGCAGTACAGGTATCCAGTCAAG 59.804 47.826 0.00 0.00 0.00 3.02
991 1785 3.133003 CAGTACAGGTATCCAGTCAAGGG 59.867 52.174 0.00 0.00 0.00 3.95
995 1789 3.655777 ACAGGTATCCAGTCAAGGGAAAA 59.344 43.478 0.00 0.00 38.09 2.29
996 1790 4.105697 ACAGGTATCCAGTCAAGGGAAAAA 59.894 41.667 0.00 0.00 38.09 1.94
1007 1801 5.835280 AGTCAAGGGAAAAATCAATGTCACT 59.165 36.000 0.00 0.00 0.00 3.41
1338 2133 1.097547 GCACCATCATAAGCACGGCT 61.098 55.000 0.00 0.00 42.56 5.52
1365 2160 4.771356 CGGACGGTGTGCGTCGAT 62.771 66.667 0.00 0.00 42.13 3.59
1538 2333 4.426313 GTGGGGAAAGGGAGGCGG 62.426 72.222 0.00 0.00 0.00 6.13
1764 2561 0.895530 CGGACTTCCAAGAGCAGGTA 59.104 55.000 0.00 0.00 35.14 3.08
1788 2585 1.065491 CGGTGGGGTCATCTTCATGAA 60.065 52.381 8.12 8.12 40.90 2.57
1812 2609 1.447838 CGACATAACGTGGCTGCCT 60.448 57.895 21.03 1.26 31.78 4.75
2190 2996 0.963962 TCGACAACTCCGGCTTTAGT 59.036 50.000 0.00 0.00 0.00 2.24
2239 3045 2.027073 GCCGACATGCAACGTCTCA 61.027 57.895 15.32 0.00 0.00 3.27
2415 3221 2.894879 GCGCATGCCGATGTGGTA 60.895 61.111 13.15 0.00 40.00 3.25
2553 3359 7.893124 TCTTAAGGTGAAAGATAGGTACGAT 57.107 36.000 1.85 0.00 0.00 3.73
2733 3539 0.317160 TGTACAAGGAGGCTCGTGTG 59.683 55.000 24.68 19.06 32.15 3.82
2754 3560 7.244192 GTGTGTGCTCATTCTTTAAGGATTAC 58.756 38.462 0.00 0.00 0.00 1.89
2761 3567 9.047371 GCTCATTCTTTAAGGATTACTAAGGAC 57.953 37.037 0.00 0.00 0.00 3.85
2798 3710 1.419922 GTACATTGCACCACGCTCG 59.580 57.895 0.00 0.00 43.06 5.03
2826 3738 2.045561 TGCTTGTCGGACCTGAAAAA 57.954 45.000 5.55 0.00 0.00 1.94
2879 3791 9.616156 ACGAGGATATATATGTGAACTAGGTAG 57.384 37.037 0.00 0.00 0.00 3.18
2880 3792 9.058174 CGAGGATATATATGTGAACTAGGTAGG 57.942 40.741 0.00 0.00 0.00 3.18
2894 3889 5.526434 ACTAGGTAGGTACTATTGCCAACT 58.474 41.667 0.00 0.00 45.60 3.16
2895 3890 6.676558 ACTAGGTAGGTACTATTGCCAACTA 58.323 40.000 0.00 0.00 45.60 2.24
2896 3891 5.866159 AGGTAGGTACTATTGCCAACTAC 57.134 43.478 0.00 0.00 45.60 2.73
2897 3892 4.340381 AGGTAGGTACTATTGCCAACTACG 59.660 45.833 0.00 0.00 45.60 3.51
2913 3908 8.459635 TGCCAACTACGTATCAATCTATCTATC 58.540 37.037 0.00 0.00 0.00 2.08
3095 4098 7.922278 GCATCAGTTTATTGCAGATTATTGGAA 59.078 33.333 0.00 0.00 36.40 3.53
3107 4110 8.267183 TGCAGATTATTGGAAGAAAGATGAGTA 58.733 33.333 0.00 0.00 0.00 2.59
3128 4131 7.356089 AGTATTAAATACTCCATCCGTCACA 57.644 36.000 0.00 0.00 42.17 3.58
3129 4132 7.963532 AGTATTAAATACTCCATCCGTCACAT 58.036 34.615 0.00 0.00 42.17 3.21
3130 4133 9.085645 AGTATTAAATACTCCATCCGTCACATA 57.914 33.333 0.00 0.00 42.17 2.29
3131 4134 9.701098 GTATTAAATACTCCATCCGTCACATAA 57.299 33.333 0.00 0.00 33.00 1.90
3138 4141 7.776618 ACTCCATCCGTCACATAATATAAGA 57.223 36.000 0.00 0.00 0.00 2.10
3139 4142 7.831753 ACTCCATCCGTCACATAATATAAGAG 58.168 38.462 0.00 0.00 0.00 2.85
3140 4143 6.631016 TCCATCCGTCACATAATATAAGAGC 58.369 40.000 0.00 0.00 0.00 4.09
3141 4144 5.516696 CCATCCGTCACATAATATAAGAGCG 59.483 44.000 0.00 0.00 0.00 5.03
3142 4145 5.700722 TCCGTCACATAATATAAGAGCGT 57.299 39.130 0.00 0.00 0.00 5.07
3143 4146 6.080648 TCCGTCACATAATATAAGAGCGTT 57.919 37.500 0.00 0.00 0.00 4.84
3144 4147 6.509656 TCCGTCACATAATATAAGAGCGTTT 58.490 36.000 0.00 0.00 0.00 3.60
3147 4150 7.582679 CCGTCACATAATATAAGAGCGTTTTTG 59.417 37.037 0.00 0.00 0.00 2.44
3148 4151 8.325282 CGTCACATAATATAAGAGCGTTTTTGA 58.675 33.333 0.00 0.00 0.00 2.69
3149 4152 9.422196 GTCACATAATATAAGAGCGTTTTTGAC 57.578 33.333 0.00 0.00 0.00 3.18
3150 4153 9.157104 TCACATAATATAAGAGCGTTTTTGACA 57.843 29.630 0.00 0.00 0.00 3.58
3151 4154 9.425893 CACATAATATAAGAGCGTTTTTGACAG 57.574 33.333 0.00 0.00 0.00 3.51
3203 4219 0.243636 GTTTTCCTGGGCATGAACCG 59.756 55.000 0.00 0.00 0.00 4.44
3219 4235 2.562125 CCGGTATGGTGGTGTTTGG 58.438 57.895 0.00 0.00 0.00 3.28
3225 4241 2.470057 ATGGTGGTGTTTGGAAACCT 57.530 45.000 0.00 0.00 38.11 3.50
3231 4247 1.754226 GGTGTTTGGAAACCTTGCTGA 59.246 47.619 0.00 0.00 38.11 4.26
3261 4277 3.048600 TGCAGATAGTAGAATTGGCCCT 58.951 45.455 0.00 0.00 0.00 5.19
3294 4310 9.541143 CTAACTTGAAATCTCCCTCTCTAATTC 57.459 37.037 0.00 0.00 0.00 2.17
3308 4326 5.794894 TCTCTAATTCCGATTAGCCATTCC 58.205 41.667 2.12 0.00 42.87 3.01
3319 4337 7.400339 TCCGATTAGCCATTCCTAATCTTATCT 59.600 37.037 15.75 0.00 45.84 1.98
3398 4416 3.866651 CAGTTGTAGCATCCTTAGCAGT 58.133 45.455 0.00 0.00 0.00 4.40
3423 4446 1.192146 TTGCGACAAGGCCTAGGACT 61.192 55.000 12.97 12.97 32.88 3.85
3459 4482 4.339814 TCACACATCCTTACAAAAACACCC 59.660 41.667 0.00 0.00 0.00 4.61
3508 4531 4.591321 TCCATAGGAGTGCCAAAATTCT 57.409 40.909 0.00 0.00 36.29 2.40
3513 4536 6.071165 CCATAGGAGTGCCAAAATTCTTCTTT 60.071 38.462 0.00 0.00 36.29 2.52
3515 4538 5.143369 AGGAGTGCCAAAATTCTTCTTTCT 58.857 37.500 0.00 0.00 36.29 2.52
3527 4550 2.909006 TCTTCTTTCTCCTGCATCCACT 59.091 45.455 0.00 0.00 0.00 4.00
3548 4571 3.089784 GGCGCACCGTGAACATAG 58.910 61.111 10.83 0.00 0.00 2.23
3560 4583 2.671396 GTGAACATAGTTCGATGCCGTT 59.329 45.455 5.53 0.00 37.05 4.44
3564 4587 2.930040 ACATAGTTCGATGCCGTTTCAG 59.070 45.455 0.00 0.00 37.05 3.02
3615 4640 8.837788 TTTTAAACCTAGGAACTTGTAGTAGC 57.162 34.615 17.98 0.00 41.75 3.58
3621 4646 3.240302 AGGAACTTGTAGTAGCAGTGGT 58.760 45.455 0.00 0.00 27.25 4.16
3628 4653 1.002684 GTAGTAGCAGTGGTCGGATCG 60.003 57.143 0.00 0.00 0.00 3.69
3632 4657 2.102357 CAGTGGTCGGATCGTCGG 59.898 66.667 0.00 0.00 0.00 4.79
3634 4659 1.078214 AGTGGTCGGATCGTCGGTA 60.078 57.895 0.00 0.00 0.00 4.02
3635 4660 0.465097 AGTGGTCGGATCGTCGGTAT 60.465 55.000 0.00 0.00 0.00 2.73
3637 4662 1.196354 GTGGTCGGATCGTCGGTATAG 59.804 57.143 0.00 0.00 0.00 1.31
3652 4677 2.515854 GTATAGACCAGGAGATGCCGA 58.484 52.381 0.00 0.00 43.43 5.54
3655 4680 0.689080 AGACCAGGAGATGCCGACAT 60.689 55.000 0.00 0.00 43.43 3.06
3656 4681 1.040646 GACCAGGAGATGCCGACATA 58.959 55.000 0.00 0.00 43.43 2.29
3706 4731 4.640201 TCGGAGAAGAAAATGCCAATAAGG 59.360 41.667 0.00 0.00 41.84 2.69
3721 4746 5.440610 CCAATAAGGGCATGTAGAAACTCT 58.559 41.667 0.00 0.00 0.00 3.24
3738 4763 4.963318 ACTCTGAAGACCATGAAAGTCA 57.037 40.909 0.00 0.00 36.68 3.41
3750 4775 2.857483 TGAAAGTCAGCCAAATCCGAA 58.143 42.857 0.00 0.00 0.00 4.30
3751 4776 2.552315 TGAAAGTCAGCCAAATCCGAAC 59.448 45.455 0.00 0.00 0.00 3.95
3752 4777 1.156736 AAGTCAGCCAAATCCGAACG 58.843 50.000 0.00 0.00 0.00 3.95
3753 4778 0.673644 AGTCAGCCAAATCCGAACGG 60.674 55.000 6.94 6.94 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.972270 GAACTATGTGTTAGCATGATTGTGCGG 62.972 44.444 0.00 0.00 43.51 5.69
3 4 7.209832 GAACTATGTGTTAGCATGATTGTGCG 61.210 42.308 0.00 0.00 43.51 5.34
4 5 5.490139 ACTATGTGTTAGCATGATTGTGC 57.510 39.130 0.00 0.00 45.38 4.57
5 6 7.075674 TGAACTATGTGTTAGCATGATTGTG 57.924 36.000 0.00 0.00 39.30 3.33
6 7 6.881065 ACTGAACTATGTGTTAGCATGATTGT 59.119 34.615 0.00 0.00 39.30 2.71
7 8 7.184779 CACTGAACTATGTGTTAGCATGATTG 58.815 38.462 0.00 0.00 39.30 2.67
8 9 6.317140 CCACTGAACTATGTGTTAGCATGATT 59.683 38.462 0.00 0.00 39.30 2.57
9 10 5.819379 CCACTGAACTATGTGTTAGCATGAT 59.181 40.000 0.00 0.00 39.30 2.45
10 11 5.046663 TCCACTGAACTATGTGTTAGCATGA 60.047 40.000 0.00 0.00 39.30 3.07
11 12 5.063944 GTCCACTGAACTATGTGTTAGCATG 59.936 44.000 0.00 0.00 39.30 4.06
12 13 5.178797 GTCCACTGAACTATGTGTTAGCAT 58.821 41.667 0.00 0.00 39.30 3.79
13 14 4.562757 GGTCCACTGAACTATGTGTTAGCA 60.563 45.833 0.00 0.00 39.30 3.49
14 15 3.933332 GGTCCACTGAACTATGTGTTAGC 59.067 47.826 0.00 0.00 39.30 3.09
15 16 5.407407 AGGTCCACTGAACTATGTGTTAG 57.593 43.478 0.00 0.00 36.54 2.34
16 17 5.818678 AAGGTCCACTGAACTATGTGTTA 57.181 39.130 0.00 0.00 37.64 2.41
17 18 4.706842 AAGGTCCACTGAACTATGTGTT 57.293 40.909 0.00 0.00 37.64 3.32
18 19 4.706842 AAAGGTCCACTGAACTATGTGT 57.293 40.909 0.00 0.00 37.64 3.72
19 20 5.063204 TCAAAAGGTCCACTGAACTATGTG 58.937 41.667 0.00 0.00 37.64 3.21
20 21 5.304686 TCAAAAGGTCCACTGAACTATGT 57.695 39.130 0.00 0.00 37.64 2.29
21 22 6.824305 AATCAAAAGGTCCACTGAACTATG 57.176 37.500 0.00 0.00 37.64 2.23
22 23 7.839680 AAAATCAAAAGGTCCACTGAACTAT 57.160 32.000 0.00 0.00 37.64 2.12
23 24 7.340743 TCAAAAATCAAAAGGTCCACTGAACTA 59.659 33.333 0.00 0.00 37.64 2.24
24 25 6.154363 TCAAAAATCAAAAGGTCCACTGAACT 59.846 34.615 0.00 0.00 41.50 3.01
25 26 6.337356 TCAAAAATCAAAAGGTCCACTGAAC 58.663 36.000 0.00 0.00 0.00 3.18
26 27 6.537453 TCAAAAATCAAAAGGTCCACTGAA 57.463 33.333 0.00 0.00 0.00 3.02
27 28 6.729690 ATCAAAAATCAAAAGGTCCACTGA 57.270 33.333 0.00 0.00 0.00 3.41
28 29 7.306749 CGAAATCAAAAATCAAAAGGTCCACTG 60.307 37.037 0.00 0.00 0.00 3.66
29 30 6.701400 CGAAATCAAAAATCAAAAGGTCCACT 59.299 34.615 0.00 0.00 0.00 4.00
30 31 6.699642 TCGAAATCAAAAATCAAAAGGTCCAC 59.300 34.615 0.00 0.00 0.00 4.02
31 32 6.810911 TCGAAATCAAAAATCAAAAGGTCCA 58.189 32.000 0.00 0.00 0.00 4.02
32 33 7.569408 GCTTCGAAATCAAAAATCAAAAGGTCC 60.569 37.037 0.00 0.00 0.00 4.46
33 34 7.042791 TGCTTCGAAATCAAAAATCAAAAGGTC 60.043 33.333 0.00 0.00 0.00 3.85
34 35 6.760770 TGCTTCGAAATCAAAAATCAAAAGGT 59.239 30.769 0.00 0.00 0.00 3.50
35 36 7.176285 TGCTTCGAAATCAAAAATCAAAAGG 57.824 32.000 0.00 0.00 0.00 3.11
36 37 9.098746 CAATGCTTCGAAATCAAAAATCAAAAG 57.901 29.630 0.00 0.00 0.00 2.27
37 38 8.824781 TCAATGCTTCGAAATCAAAAATCAAAA 58.175 25.926 0.00 0.00 0.00 2.44
38 39 8.274939 GTCAATGCTTCGAAATCAAAAATCAAA 58.725 29.630 0.00 0.00 0.00 2.69
39 40 7.095691 GGTCAATGCTTCGAAATCAAAAATCAA 60.096 33.333 0.00 0.00 0.00 2.57
40 41 6.365789 GGTCAATGCTTCGAAATCAAAAATCA 59.634 34.615 0.00 0.00 0.00 2.57
41 42 6.587608 AGGTCAATGCTTCGAAATCAAAAATC 59.412 34.615 0.00 0.00 0.00 2.17
42 43 6.366877 CAGGTCAATGCTTCGAAATCAAAAAT 59.633 34.615 0.00 0.00 0.00 1.82
43 44 5.691305 CAGGTCAATGCTTCGAAATCAAAAA 59.309 36.000 0.00 0.00 0.00 1.94
44 45 5.221880 CAGGTCAATGCTTCGAAATCAAAA 58.778 37.500 0.00 0.00 0.00 2.44
45 46 4.797471 CAGGTCAATGCTTCGAAATCAAA 58.203 39.130 0.00 0.00 0.00 2.69
46 47 3.366273 GCAGGTCAATGCTTCGAAATCAA 60.366 43.478 0.00 0.00 43.07 2.57
47 48 2.162208 GCAGGTCAATGCTTCGAAATCA 59.838 45.455 0.00 0.40 43.07 2.57
48 49 2.162208 TGCAGGTCAATGCTTCGAAATC 59.838 45.455 0.00 0.00 46.63 2.17
49 50 2.161855 TGCAGGTCAATGCTTCGAAAT 58.838 42.857 0.00 0.00 46.63 2.17
50 51 1.603456 TGCAGGTCAATGCTTCGAAA 58.397 45.000 0.00 0.00 46.63 3.46
51 52 1.266718 GTTGCAGGTCAATGCTTCGAA 59.733 47.619 0.00 0.00 46.63 3.71
52 53 0.874390 GTTGCAGGTCAATGCTTCGA 59.126 50.000 0.00 0.00 46.63 3.71
53 54 0.109597 GGTTGCAGGTCAATGCTTCG 60.110 55.000 0.00 0.00 46.63 3.79
54 55 0.961019 TGGTTGCAGGTCAATGCTTC 59.039 50.000 0.00 0.00 46.63 3.86
55 56 0.675633 GTGGTTGCAGGTCAATGCTT 59.324 50.000 0.00 0.00 46.63 3.91
56 57 1.181098 GGTGGTTGCAGGTCAATGCT 61.181 55.000 0.00 0.00 46.63 3.79
57 58 1.290009 GGTGGTTGCAGGTCAATGC 59.710 57.895 0.00 0.00 46.68 3.56
58 59 0.827089 TGGGTGGTTGCAGGTCAATG 60.827 55.000 0.00 0.00 36.99 2.82
59 60 0.114954 ATGGGTGGTTGCAGGTCAAT 59.885 50.000 0.00 0.00 36.99 2.57
60 61 0.774276 TATGGGTGGTTGCAGGTCAA 59.226 50.000 0.00 0.00 0.00 3.18
61 62 0.774276 TTATGGGTGGTTGCAGGTCA 59.226 50.000 0.00 0.00 0.00 4.02
62 63 1.917872 TTTATGGGTGGTTGCAGGTC 58.082 50.000 0.00 0.00 0.00 3.85
63 64 2.158385 TCTTTTATGGGTGGTTGCAGGT 60.158 45.455 0.00 0.00 0.00 4.00
64 65 2.524306 TCTTTTATGGGTGGTTGCAGG 58.476 47.619 0.00 0.00 0.00 4.85
65 66 4.202050 GCTATCTTTTATGGGTGGTTGCAG 60.202 45.833 0.00 0.00 0.00 4.41
66 67 3.699038 GCTATCTTTTATGGGTGGTTGCA 59.301 43.478 0.00 0.00 0.00 4.08
67 68 3.068165 GGCTATCTTTTATGGGTGGTTGC 59.932 47.826 0.00 0.00 0.00 4.17
68 69 4.277476 TGGCTATCTTTTATGGGTGGTTG 58.723 43.478 0.00 0.00 0.00 3.77
69 70 4.601406 TGGCTATCTTTTATGGGTGGTT 57.399 40.909 0.00 0.00 0.00 3.67
70 71 4.278310 GTTGGCTATCTTTTATGGGTGGT 58.722 43.478 0.00 0.00 0.00 4.16
71 72 3.636764 GGTTGGCTATCTTTTATGGGTGG 59.363 47.826 0.00 0.00 0.00 4.61
72 73 4.536765 AGGTTGGCTATCTTTTATGGGTG 58.463 43.478 0.00 0.00 0.00 4.61
73 74 4.881157 AGGTTGGCTATCTTTTATGGGT 57.119 40.909 0.00 0.00 0.00 4.51
74 75 6.187727 TCTAGGTTGGCTATCTTTTATGGG 57.812 41.667 0.00 0.00 0.00 4.00
75 76 6.043243 TCCTCTAGGTTGGCTATCTTTTATGG 59.957 42.308 0.00 0.00 36.34 2.74
76 77 7.067496 TCCTCTAGGTTGGCTATCTTTTATG 57.933 40.000 0.00 0.00 36.34 1.90
77 78 7.880265 ATCCTCTAGGTTGGCTATCTTTTAT 57.120 36.000 0.00 0.00 36.34 1.40
78 79 8.792830 TTATCCTCTAGGTTGGCTATCTTTTA 57.207 34.615 0.00 0.00 36.34 1.52
79 80 7.202139 CCTTATCCTCTAGGTTGGCTATCTTTT 60.202 40.741 0.00 0.00 36.34 2.27
80 81 6.271159 CCTTATCCTCTAGGTTGGCTATCTTT 59.729 42.308 0.00 0.00 36.34 2.52
81 82 5.782845 CCTTATCCTCTAGGTTGGCTATCTT 59.217 44.000 0.00 0.00 36.34 2.40
82 83 5.162815 ACCTTATCCTCTAGGTTGGCTATCT 60.163 44.000 0.00 0.00 42.01 1.98
83 84 5.088026 ACCTTATCCTCTAGGTTGGCTATC 58.912 45.833 0.00 0.00 42.01 2.08
84 85 5.088026 GACCTTATCCTCTAGGTTGGCTAT 58.912 45.833 0.00 0.00 44.65 2.97
85 86 4.481072 GACCTTATCCTCTAGGTTGGCTA 58.519 47.826 0.00 0.00 44.65 3.93
86 87 3.310193 GACCTTATCCTCTAGGTTGGCT 58.690 50.000 0.00 0.00 44.65 4.75
87 88 2.036089 CGACCTTATCCTCTAGGTTGGC 59.964 54.545 0.00 0.00 44.65 4.52
88 89 3.297736 ACGACCTTATCCTCTAGGTTGG 58.702 50.000 11.99 3.49 46.17 3.77
89 90 4.401519 TCAACGACCTTATCCTCTAGGTTG 59.598 45.833 6.92 6.92 44.65 3.77
90 91 4.607239 TCAACGACCTTATCCTCTAGGTT 58.393 43.478 0.00 0.00 44.65 3.50
92 93 4.827835 TCATCAACGACCTTATCCTCTAGG 59.172 45.833 0.00 0.00 37.56 3.02
93 94 6.039941 ACTTCATCAACGACCTTATCCTCTAG 59.960 42.308 0.00 0.00 0.00 2.43
94 95 5.892119 ACTTCATCAACGACCTTATCCTCTA 59.108 40.000 0.00 0.00 0.00 2.43
95 96 4.712337 ACTTCATCAACGACCTTATCCTCT 59.288 41.667 0.00 0.00 0.00 3.69
96 97 5.012328 ACTTCATCAACGACCTTATCCTC 57.988 43.478 0.00 0.00 0.00 3.71
97 98 5.187967 AGAACTTCATCAACGACCTTATCCT 59.812 40.000 0.00 0.00 0.00 3.24
98 99 5.420409 AGAACTTCATCAACGACCTTATCC 58.580 41.667 0.00 0.00 0.00 2.59
99 100 6.969828 AAGAACTTCATCAACGACCTTATC 57.030 37.500 0.00 0.00 0.00 1.75
100 101 7.545965 CACTAAGAACTTCATCAACGACCTTAT 59.454 37.037 0.00 0.00 0.00 1.73
101 102 6.866770 CACTAAGAACTTCATCAACGACCTTA 59.133 38.462 0.00 0.00 0.00 2.69
102 103 5.696724 CACTAAGAACTTCATCAACGACCTT 59.303 40.000 0.00 0.00 0.00 3.50
103 104 5.010719 TCACTAAGAACTTCATCAACGACCT 59.989 40.000 0.00 0.00 0.00 3.85
104 105 5.227908 TCACTAAGAACTTCATCAACGACC 58.772 41.667 0.00 0.00 0.00 4.79
105 106 6.952935 ATCACTAAGAACTTCATCAACGAC 57.047 37.500 0.00 0.00 0.00 4.34
106 107 7.599171 TGTATCACTAAGAACTTCATCAACGA 58.401 34.615 0.00 0.00 0.00 3.85
107 108 7.812309 TGTATCACTAAGAACTTCATCAACG 57.188 36.000 0.00 0.00 0.00 4.10
108 109 8.171840 GCTTGTATCACTAAGAACTTCATCAAC 58.828 37.037 0.00 0.00 0.00 3.18
109 110 7.334421 GGCTTGTATCACTAAGAACTTCATCAA 59.666 37.037 0.00 0.00 0.00 2.57
110 111 6.818644 GGCTTGTATCACTAAGAACTTCATCA 59.181 38.462 0.00 0.00 0.00 3.07
111 112 6.258947 GGGCTTGTATCACTAAGAACTTCATC 59.741 42.308 0.00 0.00 0.00 2.92
112 113 6.069963 AGGGCTTGTATCACTAAGAACTTCAT 60.070 38.462 0.00 0.00 0.00 2.57
113 114 5.248477 AGGGCTTGTATCACTAAGAACTTCA 59.752 40.000 0.00 0.00 0.00 3.02
114 115 5.735766 AGGGCTTGTATCACTAAGAACTTC 58.264 41.667 0.00 0.00 0.00 3.01
115 116 5.763876 AGGGCTTGTATCACTAAGAACTT 57.236 39.130 0.00 0.00 0.00 2.66
116 117 5.763876 AAGGGCTTGTATCACTAAGAACT 57.236 39.130 0.00 0.00 0.00 3.01
117 118 5.123979 CCAAAGGGCTTGTATCACTAAGAAC 59.876 44.000 0.00 0.00 32.65 3.01
118 119 5.253330 CCAAAGGGCTTGTATCACTAAGAA 58.747 41.667 0.00 0.00 32.65 2.52
119 120 4.843728 CCAAAGGGCTTGTATCACTAAGA 58.156 43.478 0.00 0.00 32.65 2.10
133 134 8.329624 GGATTTTCCTAATTAAAGCCAAAGGGC 61.330 40.741 0.00 0.00 46.97 5.19
134 135 7.047891 GGATTTTCCTAATTAAAGCCAAAGGG 58.952 38.462 1.68 0.00 39.11 3.95
135 136 6.756542 CGGATTTTCCTAATTAAAGCCAAAGG 59.243 38.462 6.54 0.00 39.22 3.11
136 137 6.756542 CCGGATTTTCCTAATTAAAGCCAAAG 59.243 38.462 0.00 0.00 39.22 2.77
137 138 6.635755 CCGGATTTTCCTAATTAAAGCCAAA 58.364 36.000 0.00 0.00 39.22 3.28
138 139 5.394773 GCCGGATTTTCCTAATTAAAGCCAA 60.395 40.000 5.05 0.00 39.22 4.52
139 140 4.098807 GCCGGATTTTCCTAATTAAAGCCA 59.901 41.667 5.05 0.00 39.22 4.75
140 141 4.341235 AGCCGGATTTTCCTAATTAAAGCC 59.659 41.667 5.05 0.00 36.66 4.35
141 142 5.515797 AGCCGGATTTTCCTAATTAAAGC 57.484 39.130 5.05 0.00 33.30 3.51
142 143 8.463607 TGTTTAGCCGGATTTTCCTAATTAAAG 58.536 33.333 5.05 0.00 33.30 1.85
143 144 8.350852 TGTTTAGCCGGATTTTCCTAATTAAA 57.649 30.769 5.05 0.00 33.30 1.52
144 145 7.941431 TGTTTAGCCGGATTTTCCTAATTAA 57.059 32.000 5.05 0.00 33.30 1.40
145 146 7.941431 TTGTTTAGCCGGATTTTCCTAATTA 57.059 32.000 5.05 0.00 33.30 1.40
146 147 6.844097 TTGTTTAGCCGGATTTTCCTAATT 57.156 33.333 5.05 0.00 33.30 1.40
147 148 6.844097 TTTGTTTAGCCGGATTTTCCTAAT 57.156 33.333 5.05 0.00 33.30 1.73
159 160 4.009798 TGTCGCATAATTTGTTTAGCCG 57.990 40.909 0.00 0.00 0.00 5.52
199 200 5.818678 ATCCCTTAACAGTTGACACTACA 57.181 39.130 0.00 0.00 0.00 2.74
203 204 5.767816 ACAAATCCCTTAACAGTTGACAC 57.232 39.130 0.00 0.00 0.00 3.67
284 285 8.978874 ATGATAGCATAATAGTGTGGTTTTCA 57.021 30.769 0.00 2.53 31.57 2.69
314 315 5.291858 GCCTCCAAGTCAAAGAAACAAAAAG 59.708 40.000 0.00 0.00 0.00 2.27
381 401 2.604969 TGTATCGCCAAAAACTTCGC 57.395 45.000 0.00 0.00 0.00 4.70
401 421 0.777446 TTCCTAAGGGCCAAAGTGCT 59.223 50.000 6.18 0.00 0.00 4.40
404 424 3.441101 GGATTTTCCTAAGGGCCAAAGT 58.559 45.455 6.18 0.00 32.53 2.66
427 450 4.082245 CACAAATTTCCATCACCCAGGTAC 60.082 45.833 0.00 0.00 0.00 3.34
428 451 4.085733 CACAAATTTCCATCACCCAGGTA 58.914 43.478 0.00 0.00 0.00 3.08
429 452 2.899256 CACAAATTTCCATCACCCAGGT 59.101 45.455 0.00 0.00 0.00 4.00
430 453 2.234414 CCACAAATTTCCATCACCCAGG 59.766 50.000 0.00 0.00 0.00 4.45
431 454 2.354003 GCCACAAATTTCCATCACCCAG 60.354 50.000 0.00 0.00 0.00 4.45
432 455 1.622811 GCCACAAATTTCCATCACCCA 59.377 47.619 0.00 0.00 0.00 4.51
433 456 1.622811 TGCCACAAATTTCCATCACCC 59.377 47.619 0.00 0.00 0.00 4.61
444 467 9.100554 CATCAAAATTACATGTATGCCACAAAT 57.899 29.630 6.36 0.00 41.55 2.32
477 500 1.270625 TGGAGCCCTTAACAGTTGACG 60.271 52.381 0.00 0.00 0.00 4.35
559 667 1.269361 TGTGTTAGCGTGATCGTGTGT 60.269 47.619 0.00 0.00 39.49 3.72
565 673 4.095185 AGTCTACTCTGTGTTAGCGTGATC 59.905 45.833 0.00 0.00 0.00 2.92
568 676 3.833545 AGTCTACTCTGTGTTAGCGTG 57.166 47.619 0.00 0.00 0.00 5.34
625 895 3.023832 CTGTCTTTTTCTGGGTGGTTGT 58.976 45.455 0.00 0.00 0.00 3.32
648 918 6.043938 TGTCAACAAGGTTATCCTCTAGGTTT 59.956 38.462 0.00 0.00 44.35 3.27
695 966 5.107065 CGAGTTGTGTTTCTAAGGGCTAAAG 60.107 44.000 0.00 0.00 0.00 1.85
715 986 7.912056 ATTTTCTACATATATGCATGCGAGT 57.088 32.000 14.09 5.72 0.00 4.18
748 1019 0.670546 ACGAATGGACGCAAGAGGTG 60.671 55.000 0.00 0.00 43.62 4.00
749 1020 0.034896 AACGAATGGACGCAAGAGGT 59.965 50.000 0.00 0.00 43.62 3.85
750 1021 1.927174 CTAACGAATGGACGCAAGAGG 59.073 52.381 0.00 0.00 43.62 3.69
751 1022 2.599082 GACTAACGAATGGACGCAAGAG 59.401 50.000 0.00 0.00 43.62 2.85
752 1023 2.230508 AGACTAACGAATGGACGCAAGA 59.769 45.455 0.00 0.00 43.62 3.02
754 1025 2.333926 CAGACTAACGAATGGACGCAA 58.666 47.619 0.00 0.00 36.70 4.85
755 1026 1.990799 CAGACTAACGAATGGACGCA 58.009 50.000 0.00 0.00 36.70 5.24
756 1027 0.645868 GCAGACTAACGAATGGACGC 59.354 55.000 0.00 0.00 36.70 5.19
757 1028 0.914551 CGCAGACTAACGAATGGACG 59.085 55.000 0.00 0.00 39.31 4.79
758 1029 0.645868 GCGCAGACTAACGAATGGAC 59.354 55.000 0.30 0.00 0.00 4.02
759 1030 0.245266 TGCGCAGACTAACGAATGGA 59.755 50.000 5.66 0.00 0.00 3.41
760 1031 0.370273 GTGCGCAGACTAACGAATGG 59.630 55.000 12.22 0.00 0.00 3.16
761 1032 1.059692 CTGTGCGCAGACTAACGAATG 59.940 52.381 22.94 0.00 45.28 2.67
762 1033 1.350193 CTGTGCGCAGACTAACGAAT 58.650 50.000 22.94 0.00 45.28 3.34
763 1034 1.282248 GCTGTGCGCAGACTAACGAA 61.282 55.000 30.83 0.00 45.28 3.85
764 1035 1.733041 GCTGTGCGCAGACTAACGA 60.733 57.895 30.83 0.00 45.28 3.85
765 1036 2.772189 GCTGTGCGCAGACTAACG 59.228 61.111 30.83 3.58 45.28 3.18
783 1392 1.346068 AGTGAACCCACAGAGAAGCTC 59.654 52.381 0.00 0.00 45.54 4.09
819 1613 1.833434 CTTGCCCGTTTACGTGCGAA 61.833 55.000 0.00 1.22 45.46 4.70
824 1618 2.252976 TAAACCTTGCCCGTTTACGT 57.747 45.000 0.00 0.00 35.19 3.57
827 1621 6.887013 TCACTATATAAACCTTGCCCGTTTA 58.113 36.000 3.48 3.48 39.36 2.01
833 1627 7.224949 GTCTGACTTCACTATATAAACCTTGCC 59.775 40.741 0.00 0.00 0.00 4.52
844 1638 6.719829 TCAAGTTGGAGTCTGACTTCACTATA 59.280 38.462 18.25 1.11 32.38 1.31
845 1639 5.540337 TCAAGTTGGAGTCTGACTTCACTAT 59.460 40.000 18.25 4.84 32.38 2.12
846 1640 4.893524 TCAAGTTGGAGTCTGACTTCACTA 59.106 41.667 18.25 2.25 32.38 2.74
847 1641 3.706594 TCAAGTTGGAGTCTGACTTCACT 59.293 43.478 18.25 14.85 32.38 3.41
849 1643 3.706594 ACTCAAGTTGGAGTCTGACTTCA 59.293 43.478 14.79 14.79 44.63 3.02
850 1644 4.329462 ACTCAAGTTGGAGTCTGACTTC 57.671 45.455 12.27 10.71 44.63 3.01
851 1645 4.282195 CCTACTCAAGTTGGAGTCTGACTT 59.718 45.833 12.27 6.04 44.63 3.01
852 1646 3.829601 CCTACTCAAGTTGGAGTCTGACT 59.170 47.826 10.66 10.66 44.63 3.41
854 1648 4.114015 TCCTACTCAAGTTGGAGTCTGA 57.886 45.455 8.94 3.67 44.63 3.27
861 1655 4.559862 ACTTGGATCCTACTCAAGTTGG 57.440 45.455 14.23 4.48 45.89 3.77
865 1659 5.674525 TGCATAACTTGGATCCTACTCAAG 58.325 41.667 14.23 10.14 42.37 3.02
866 1660 5.692115 TGCATAACTTGGATCCTACTCAA 57.308 39.130 14.23 0.00 0.00 3.02
867 1661 5.614308 CATGCATAACTTGGATCCTACTCA 58.386 41.667 14.23 0.88 33.53 3.41
868 1662 4.453819 GCATGCATAACTTGGATCCTACTC 59.546 45.833 14.21 0.00 33.53 2.59
869 1663 4.141413 TGCATGCATAACTTGGATCCTACT 60.141 41.667 18.46 0.00 33.53 2.57
870 1664 4.136796 TGCATGCATAACTTGGATCCTAC 58.863 43.478 18.46 0.00 33.53 3.18
871 1665 4.436113 TGCATGCATAACTTGGATCCTA 57.564 40.909 18.46 4.17 33.53 2.94
872 1666 3.301794 TGCATGCATAACTTGGATCCT 57.698 42.857 18.46 0.00 33.53 3.24
873 1667 3.909430 CATGCATGCATAACTTGGATCC 58.091 45.455 31.73 4.20 33.53 3.36
887 1681 4.840288 CGGCGTGGTGCATGCATG 62.840 66.667 25.64 22.70 46.93 4.06
898 1692 4.794439 TCATGGTCTCGCGGCGTG 62.794 66.667 22.90 20.04 0.00 5.34
899 1693 4.796231 GTCATGGTCTCGCGGCGT 62.796 66.667 22.90 0.00 0.00 5.68
901 1695 2.292794 TAAGGTCATGGTCTCGCGGC 62.293 60.000 6.13 0.00 0.00 6.53
902 1696 0.389391 ATAAGGTCATGGTCTCGCGG 59.611 55.000 6.13 0.00 0.00 6.46
903 1697 1.491670 CATAAGGTCATGGTCTCGCG 58.508 55.000 0.00 0.00 0.00 5.87
904 1698 1.221414 GCATAAGGTCATGGTCTCGC 58.779 55.000 0.00 0.00 0.00 5.03
967 1761 2.815158 TGACTGGATACCTGTACTGCA 58.185 47.619 0.00 0.00 35.85 4.41
968 1762 3.430929 CCTTGACTGGATACCTGTACTGC 60.431 52.174 0.00 0.00 35.85 4.40
970 1764 3.012502 TCCCTTGACTGGATACCTGTACT 59.987 47.826 0.00 0.00 35.85 2.73
971 1765 3.371965 TCCCTTGACTGGATACCTGTAC 58.628 50.000 0.00 0.00 35.85 2.90
972 1766 3.769189 TCCCTTGACTGGATACCTGTA 57.231 47.619 0.00 0.00 35.85 2.74
973 1767 2.642171 TCCCTTGACTGGATACCTGT 57.358 50.000 0.00 0.00 38.38 4.00
976 1770 5.261216 TGATTTTTCCCTTGACTGGATACC 58.739 41.667 0.00 0.00 0.00 2.73
977 1771 6.834168 TTGATTTTTCCCTTGACTGGATAC 57.166 37.500 0.00 0.00 0.00 2.24
978 1772 6.953520 ACATTGATTTTTCCCTTGACTGGATA 59.046 34.615 0.00 0.00 0.00 2.59
980 1774 5.147032 ACATTGATTTTTCCCTTGACTGGA 58.853 37.500 0.00 0.00 0.00 3.86
981 1775 5.010922 TGACATTGATTTTTCCCTTGACTGG 59.989 40.000 0.00 0.00 0.00 4.00
984 1778 6.089249 AGTGACATTGATTTTTCCCTTGAC 57.911 37.500 0.00 0.00 0.00 3.18
985 1779 6.434028 CCTAGTGACATTGATTTTTCCCTTGA 59.566 38.462 0.00 0.00 0.00 3.02
986 1780 6.350445 CCCTAGTGACATTGATTTTTCCCTTG 60.350 42.308 0.00 0.00 0.00 3.61
989 1783 4.142160 GCCCTAGTGACATTGATTTTTCCC 60.142 45.833 0.00 0.00 0.00 3.97
991 1785 5.643379 TGCCCTAGTGACATTGATTTTTC 57.357 39.130 0.00 0.00 0.00 2.29
1365 2160 4.765449 ATGAGCCGCTTCGCTGCA 62.765 61.111 0.00 0.00 41.09 4.41
1788 2585 0.872881 GCCACGTTATGTCGCCGTAT 60.873 55.000 0.00 0.00 32.81 3.06
2098 2904 0.824109 TCTGGGCTATTGAGACACGG 59.176 55.000 0.00 0.00 28.74 4.94
2124 2930 2.659610 GCGCAGGAAGTGAGGAGT 59.340 61.111 0.30 0.00 0.00 3.85
2154 2960 1.133884 TCGAAGAAGGAGCCTCGGATA 60.134 52.381 0.00 0.00 0.00 2.59
2190 2996 2.075566 TGCCTTGGACAGTGGGACA 61.076 57.895 0.00 0.00 0.00 4.02
2239 3045 1.279271 CAAGTCCGGATTGAGGTTCCT 59.721 52.381 7.81 0.00 0.00 3.36
2415 3221 1.804372 GCCATTTGCTCGATCTCGTCT 60.804 52.381 0.00 0.00 40.80 4.18
2553 3359 1.002274 GGAGAAGAGCCCCTCTGGA 59.998 63.158 0.00 0.00 40.28 3.86
2733 3539 8.831550 CCTTAGTAATCCTTAAAGAATGAGCAC 58.168 37.037 0.00 0.00 0.00 4.40
2754 3560 3.751175 TCTGCCAAATTTGACGTCCTTAG 59.249 43.478 19.86 0.58 0.00 2.18
2798 3710 1.002792 GTCCGACAAGCAACCAGAAAC 60.003 52.381 0.00 0.00 0.00 2.78
2878 3790 5.595542 TGATACGTAGTTGGCAATAGTACCT 59.404 40.000 1.92 0.00 37.78 3.08
2879 3791 5.835257 TGATACGTAGTTGGCAATAGTACC 58.165 41.667 1.92 0.00 37.78 3.34
2880 3792 7.866393 AGATTGATACGTAGTTGGCAATAGTAC 59.134 37.037 1.92 5.33 37.78 2.73
3070 4073 9.459640 CTTCCAATAATCTGCAATAAACTGATG 57.540 33.333 0.00 0.00 0.00 3.07
3112 4115 9.475620 TCTTATATTATGTGACGGATGGAGTAT 57.524 33.333 0.00 0.00 0.00 2.12
3115 4118 6.754209 GCTCTTATATTATGTGACGGATGGAG 59.246 42.308 0.00 0.00 0.00 3.86
3116 4119 6.625081 CGCTCTTATATTATGTGACGGATGGA 60.625 42.308 0.00 0.00 0.00 3.41
3117 4120 5.516696 CGCTCTTATATTATGTGACGGATGG 59.483 44.000 0.00 0.00 0.00 3.51
3118 4121 6.093404 ACGCTCTTATATTATGTGACGGATG 58.907 40.000 0.00 0.00 0.00 3.51
3121 4124 6.764877 AAACGCTCTTATATTATGTGACGG 57.235 37.500 0.00 0.00 0.00 4.79
3122 4125 8.325282 TCAAAAACGCTCTTATATTATGTGACG 58.675 33.333 0.00 0.00 0.00 4.35
3123 4126 9.422196 GTCAAAAACGCTCTTATATTATGTGAC 57.578 33.333 0.00 0.00 0.00 3.67
3125 4128 9.425893 CTGTCAAAAACGCTCTTATATTATGTG 57.574 33.333 0.00 0.00 0.00 3.21
3126 4129 9.162764 ACTGTCAAAAACGCTCTTATATTATGT 57.837 29.630 0.00 0.00 0.00 2.29
3135 4138 9.575783 TTTTTATTTACTGTCAAAAACGCTCTT 57.424 25.926 0.00 0.00 0.00 2.85
3170 4186 5.300792 CCCAGGAAAACTAAAGCTACAAACA 59.699 40.000 0.00 0.00 0.00 2.83
3172 4188 4.279922 GCCCAGGAAAACTAAAGCTACAAA 59.720 41.667 0.00 0.00 0.00 2.83
3174 4190 3.181438 TGCCCAGGAAAACTAAAGCTACA 60.181 43.478 0.00 0.00 0.00 2.74
3183 4199 1.632589 GGTTCATGCCCAGGAAAACT 58.367 50.000 0.00 0.00 32.61 2.66
3187 4203 1.202099 TACCGGTTCATGCCCAGGAA 61.202 55.000 15.04 0.00 0.00 3.36
3203 4219 2.297880 GGTTTCCAAACACCACCATACC 59.702 50.000 4.63 0.00 40.63 2.73
3231 4247 8.790718 CCAATTCTACTATCTGCATGCTTTAAT 58.209 33.333 20.33 9.27 0.00 1.40
3261 4277 8.881262 AGAGGGAGATTTCAAGTTAGTTCTTAA 58.119 33.333 0.00 0.00 0.00 1.85
3294 4310 7.560368 AGATAAGATTAGGAATGGCTAATCGG 58.440 38.462 0.00 0.00 43.49 4.18
3371 4389 2.182827 AGGATGCTACAACTGCTCTGA 58.817 47.619 0.00 0.00 0.00 3.27
3374 4392 2.869192 GCTAAGGATGCTACAACTGCTC 59.131 50.000 0.00 0.00 0.00 4.26
3375 4393 2.237143 TGCTAAGGATGCTACAACTGCT 59.763 45.455 0.00 0.00 0.00 4.24
3406 4424 1.041437 ATAGTCCTAGGCCTTGTCGC 58.959 55.000 12.58 0.80 0.00 5.19
3407 4425 6.777213 AATATATAGTCCTAGGCCTTGTCG 57.223 41.667 12.58 0.00 0.00 4.35
3408 4426 9.257428 ACTTAATATATAGTCCTAGGCCTTGTC 57.743 37.037 12.58 4.43 0.00 3.18
3439 4462 5.529581 AAGGGTGTTTTTGTAAGGATGTG 57.470 39.130 0.00 0.00 0.00 3.21
3445 4468 8.989653 TTTTTCTGTAAGGGTGTTTTTGTAAG 57.010 30.769 0.00 0.00 0.00 2.34
3479 4502 4.209538 TGGCACTCCTATGGATTTGAATG 58.790 43.478 0.00 0.00 0.00 2.67
3491 4514 6.306987 AGAAAGAAGAATTTTGGCACTCCTA 58.693 36.000 0.00 0.00 0.00 2.94
3492 4515 5.143369 AGAAAGAAGAATTTTGGCACTCCT 58.857 37.500 0.00 0.00 0.00 3.69
3508 4531 3.063510 CAGTGGATGCAGGAGAAAGAA 57.936 47.619 0.00 0.00 0.00 2.52
3533 4556 0.365523 CGAACTATGTTCACGGTGCG 59.634 55.000 2.51 0.00 0.00 5.34
3536 4559 2.268298 GCATCGAACTATGTTCACGGT 58.732 47.619 10.46 0.00 0.00 4.83
3548 4571 1.794222 CCCTGAAACGGCATCGAAC 59.206 57.895 0.00 0.00 40.11 3.95
3593 4616 6.723052 ACTGCTACTACAAGTTCCTAGGTTTA 59.277 38.462 9.08 0.00 0.00 2.01
3612 4637 1.712018 CGACGATCCGACCACTGCTA 61.712 60.000 0.00 0.00 0.00 3.49
3615 4640 1.371337 TACCGACGATCCGACCACTG 61.371 60.000 0.00 0.00 0.00 3.66
3621 4646 1.800805 GGTCTATACCGACGATCCGA 58.199 55.000 0.00 0.00 35.62 4.55
3632 4657 2.229302 GTCGGCATCTCCTGGTCTATAC 59.771 54.545 0.00 0.00 0.00 1.47
3634 4659 1.333177 GTCGGCATCTCCTGGTCTAT 58.667 55.000 0.00 0.00 0.00 1.98
3635 4660 0.033503 TGTCGGCATCTCCTGGTCTA 60.034 55.000 0.00 0.00 0.00 2.59
3637 4662 1.040646 TATGTCGGCATCTCCTGGTC 58.959 55.000 5.39 0.00 36.58 4.02
3652 4677 2.642427 TGCCTCACAAATCGCATATGT 58.358 42.857 4.29 0.00 0.00 2.29
3683 4708 4.640201 CCTTATTGGCATTTTCTTCTCCGA 59.360 41.667 0.00 0.00 0.00 4.55
3685 4710 5.268118 CCCTTATTGGCATTTTCTTCTCC 57.732 43.478 0.00 0.00 0.00 3.71
3706 4731 3.935828 GGTCTTCAGAGTTTCTACATGCC 59.064 47.826 0.00 0.00 0.00 4.40
3721 4746 2.106338 TGGCTGACTTTCATGGTCTTCA 59.894 45.455 0.00 0.00 35.04 3.02
3738 4763 0.036306 AGTTCCGTTCGGATTTGGCT 59.964 50.000 14.70 6.02 33.87 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.