Multiple sequence alignment - TraesCS5A01G329000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G329000 chr5A 100.000 2353 0 0 1 2353 538001907 537999555 0.000000e+00 4346.0
1 TraesCS5A01G329000 chr5A 91.077 325 20 3 2025 2340 102968306 102968630 4.650000e-117 431.0
2 TraesCS5A01G329000 chr5A 91.166 283 16 5 2025 2303 547024248 547024525 2.210000e-100 375.0
3 TraesCS5A01G329000 chr5A 93.069 202 10 1 1821 2018 537960481 537960280 2.290000e-75 292.0
4 TraesCS5A01G329000 chr5A 85.455 165 15 5 348 510 538001511 538001354 1.870000e-36 163.0
5 TraesCS5A01G329000 chr5A 85.455 165 15 5 397 554 538001560 538001398 1.870000e-36 163.0
6 TraesCS5A01G329000 chr5A 92.157 51 4 0 343 393 538001281 538001231 3.240000e-09 73.1
7 TraesCS5A01G329000 chr5A 92.157 51 4 0 627 677 538001565 538001515 3.240000e-09 73.1
8 TraesCS5A01G329000 chr5D 90.293 1638 78 36 348 1952 424224299 424222710 0.000000e+00 2069.0
9 TraesCS5A01G329000 chr5D 94.510 510 28 0 1 510 424224695 424224186 0.000000e+00 787.0
10 TraesCS5A01G329000 chr5D 94.040 151 4 1 1873 2018 424217869 424217719 8.460000e-55 224.0
11 TraesCS5A01G329000 chr5D 78.840 293 45 14 343 624 424224211 424223925 5.170000e-42 182.0
12 TraesCS5A01G329000 chr5D 96.296 108 4 0 403 510 424224200 424224093 6.680000e-41 178.0
13 TraesCS5A01G329000 chr5D 81.579 114 14 6 403 510 424224107 424223995 1.160000e-13 87.9
14 TraesCS5A01G329000 chr5D 94.118 51 3 0 627 677 424224353 424224303 6.970000e-11 78.7
15 TraesCS5A01G329000 chr5B 90.248 1251 74 23 508 1734 513324542 513323316 0.000000e+00 1591.0
16 TraesCS5A01G329000 chr5B 89.804 510 42 8 3 510 513325087 513324586 0.000000e+00 645.0
17 TraesCS5A01G329000 chr5B 91.768 328 18 3 2024 2342 575692998 575693325 4.610000e-122 448.0
18 TraesCS5A01G329000 chr5B 86.585 328 30 7 397 722 513324742 513324427 1.340000e-92 350.0
19 TraesCS5A01G329000 chr5B 93.396 106 7 0 508 613 513324445 513324340 8.710000e-35 158.0
20 TraesCS5A01G329000 chr4A 92.121 330 17 3 2025 2345 706942538 706942209 7.660000e-125 457.0
21 TraesCS5A01G329000 chr4A 92.121 330 17 3 2025 2345 706966774 706966445 7.660000e-125 457.0
22 TraesCS5A01G329000 chr3B 91.818 330 18 3 2025 2345 87125268 87124939 3.570000e-123 451.0
23 TraesCS5A01G329000 chr6A 91.515 330 19 3 2025 2345 265860237 265859908 1.660000e-121 446.0
24 TraesCS5A01G329000 chr1B 91.515 330 19 3 2025 2345 640492215 640491886 1.660000e-121 446.0
25 TraesCS5A01G329000 chr1B 91.131 327 19 4 2025 2342 647774534 647774859 3.590000e-118 435.0
26 TraesCS5A01G329000 chr6B 90.801 337 22 3 2015 2342 515658460 515658796 2.150000e-120 442.0
27 TraesCS5A01G329000 chr6B 92.339 248 11 2 2103 2342 668949549 668949796 1.730000e-91 346.0
28 TraesCS5A01G329000 chr4B 91.437 327 19 3 2025 2342 51874622 51874948 7.720000e-120 440.0
29 TraesCS5A01G329000 chr4B 90.606 330 22 3 2025 2345 61162240 61161911 1.670000e-116 429.0
30 TraesCS5A01G329000 chr4B 90.332 331 23 3 2024 2345 650519005 650518675 2.160000e-115 425.0
31 TraesCS5A01G329000 chr4B 90.030 331 24 3 2024 2345 650480015 650479685 1.010000e-113 420.0
32 TraesCS5A01G329000 chr2B 90.672 268 16 3 2018 2276 747482262 747482529 4.810000e-92 348.0
33 TraesCS5A01G329000 chr2B 92.511 227 15 2 2018 2242 772213391 772213165 8.110000e-85 324.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G329000 chr5A 537999555 538001907 2352 True 963.640000 4346 91.044800 1 2353 5 chr5A.!!$R2 2352
1 TraesCS5A01G329000 chr5D 424222710 424224695 1985 True 563.766667 2069 89.272667 1 1952 6 chr5D.!!$R2 1951
2 TraesCS5A01G329000 chr5B 513323316 513325087 1771 True 686.000000 1591 90.008250 3 1734 4 chr5B.!!$R1 1731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 736 0.4546 CCTGGCAATCTGACATGCAC 59.545 55.0 16.23 8.42 44.32 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2342 0.037605 CCGTCACTAAAAGGGCTCGT 60.038 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.612463 CGTATTCCTCCCGTTCCCTAG 59.388 57.143 0.00 0.00 0.00 3.02
48 49 2.790433 AGTAATCTCCGGCAAAAGCAA 58.210 42.857 0.00 0.00 0.00 3.91
62 63 5.176406 GGCAAAAGCAATCTCTCTTCAAAAC 59.824 40.000 0.00 0.00 0.00 2.43
103 105 5.058008 CAGTGAACGAAATTACATGCGTTTC 59.942 40.000 7.74 7.66 45.61 2.78
143 146 4.209538 CATTTGATTGAGATACTGGCCCA 58.790 43.478 0.00 0.00 0.00 5.36
175 178 3.001395 CGATCTTCCATCGTCTACACC 57.999 52.381 0.00 0.00 36.84 4.16
188 191 0.608130 CTACACCACTGCCTGCACTA 59.392 55.000 0.00 0.00 0.00 2.74
203 206 1.608627 ACTAGACCCCCACCGTGAC 60.609 63.158 0.00 0.00 0.00 3.67
216 219 4.796231 GTGACGCATCGGCCGACT 62.796 66.667 33.75 17.24 31.60 4.18
274 277 3.425713 CGCGTGCTGTCCTGCATT 61.426 61.111 0.00 0.00 45.23 3.56
275 278 2.177531 GCGTGCTGTCCTGCATTG 59.822 61.111 2.13 0.63 45.23 2.82
314 317 2.586792 GAGCCACGAGCCCAAGAT 59.413 61.111 0.00 0.00 45.47 2.40
315 318 1.817099 GAGCCACGAGCCCAAGATG 60.817 63.158 0.00 0.00 45.47 2.90
472 475 1.982938 GACTACCCTGCGACCACCT 60.983 63.158 0.00 0.00 0.00 4.00
580 632 1.602237 CGTGCCCTGGTAATCTGGT 59.398 57.895 0.00 0.00 33.14 4.00
616 668 1.282875 GCCAAAAGCGACCACTGTC 59.717 57.895 0.00 0.00 38.18 3.51
621 673 0.956633 AAAGCGACCACTGTCTCGTA 59.043 50.000 6.34 0.00 39.47 3.43
658 710 3.759766 GACTACCCTGCGCGCTCTC 62.760 68.421 33.29 11.48 0.00 3.20
660 712 3.764810 CTACCCTGCGCGCTCTCTG 62.765 68.421 33.29 17.68 0.00 3.35
684 736 0.454600 CCTGGCAATCTGACATGCAC 59.545 55.000 16.23 8.42 44.32 4.57
1050 1106 1.546548 GCTTTGGTCCTGCTTCTCCTT 60.547 52.381 0.00 0.00 0.00 3.36
1084 1165 6.182634 CGTAAGTGTGTATTATTTTGCTCCG 58.817 40.000 0.00 0.00 0.00 4.63
1085 1166 6.183360 CGTAAGTGTGTATTATTTTGCTCCGT 60.183 38.462 0.00 0.00 0.00 4.69
1086 1167 5.545658 AGTGTGTATTATTTTGCTCCGTG 57.454 39.130 0.00 0.00 0.00 4.94
1087 1168 4.394920 AGTGTGTATTATTTTGCTCCGTGG 59.605 41.667 0.00 0.00 0.00 4.94
1088 1169 4.393680 GTGTGTATTATTTTGCTCCGTGGA 59.606 41.667 0.00 0.00 0.00 4.02
1089 1170 4.393680 TGTGTATTATTTTGCTCCGTGGAC 59.606 41.667 0.00 0.00 0.00 4.02
1090 1171 4.393680 GTGTATTATTTTGCTCCGTGGACA 59.606 41.667 0.00 0.00 0.00 4.02
1091 1172 5.065988 GTGTATTATTTTGCTCCGTGGACAT 59.934 40.000 0.00 0.00 0.00 3.06
1092 1173 5.650266 TGTATTATTTTGCTCCGTGGACATT 59.350 36.000 0.00 0.00 0.00 2.71
1093 1174 5.659440 ATTATTTTGCTCCGTGGACATTT 57.341 34.783 0.00 0.00 0.00 2.32
1358 1443 3.473625 CATCAGGCAGTGCTGATCATAA 58.526 45.455 20.38 2.05 38.14 1.90
1359 1444 3.851458 TCAGGCAGTGCTGATCATAAT 57.149 42.857 16.11 0.00 0.00 1.28
1360 1445 4.961438 TCAGGCAGTGCTGATCATAATA 57.039 40.909 16.11 0.00 0.00 0.98
1361 1446 5.494390 TCAGGCAGTGCTGATCATAATAT 57.506 39.130 16.11 0.00 0.00 1.28
1452 1539 2.159393 ACTTGAATGTGTGTGTGTGTGC 60.159 45.455 0.00 0.00 0.00 4.57
1453 1540 0.737804 TGAATGTGTGTGTGTGTGCC 59.262 50.000 0.00 0.00 0.00 5.01
1454 1541 0.316937 GAATGTGTGTGTGTGTGCCG 60.317 55.000 0.00 0.00 0.00 5.69
1455 1542 2.335052 AATGTGTGTGTGTGTGCCGC 62.335 55.000 0.00 0.00 0.00 6.53
1456 1543 4.250431 GTGTGTGTGTGTGCCGCC 62.250 66.667 0.00 0.00 0.00 6.13
1528 1625 0.365859 CATCTCGATCGATGCATGCG 59.634 55.000 19.78 8.11 34.92 4.73
1532 1642 0.386478 TCGATCGATGCATGCGAGAG 60.386 55.000 15.15 16.93 41.49 3.20
1541 1651 6.101997 TCGATGCATGCGAGAGAATAATAAT 58.898 36.000 14.09 0.00 33.33 1.28
1585 1696 2.363680 TGTTCCGTTCCTTGTTACCGTA 59.636 45.455 0.00 0.00 0.00 4.02
1587 1698 3.025287 TCCGTTCCTTGTTACCGTAAC 57.975 47.619 13.58 13.58 39.11 2.50
1734 1853 1.397693 CGCAGAAGAAAACGCTCACAG 60.398 52.381 0.00 0.00 0.00 3.66
1738 1857 2.158957 AGAAGAAAACGCTCACAGGTCA 60.159 45.455 0.00 0.00 0.00 4.02
1762 1881 5.924825 ACAATCTACAGTCGGAGTTACAAAC 59.075 40.000 0.00 0.00 0.00 2.93
1791 1910 4.353437 CCTATACGTCCCCGGCGC 62.353 72.222 0.00 0.00 38.78 6.53
1807 1926 0.110419 GCGCATGCAACGTTCAACTA 60.110 50.000 19.57 0.00 42.15 2.24
1838 1957 9.790297 ATATATATAGAAGAATGGTGTGACCCT 57.210 33.333 0.00 0.00 37.50 4.34
1839 1958 2.867109 AGAAGAATGGTGTGACCCTG 57.133 50.000 0.00 0.00 37.50 4.45
1840 1959 2.057922 AGAAGAATGGTGTGACCCTGT 58.942 47.619 0.00 0.00 37.50 4.00
1841 1960 2.154462 GAAGAATGGTGTGACCCTGTG 58.846 52.381 0.00 0.00 37.50 3.66
1842 1961 1.140312 AGAATGGTGTGACCCTGTGT 58.860 50.000 0.00 0.00 37.50 3.72
1843 1962 1.202806 AGAATGGTGTGACCCTGTGTG 60.203 52.381 0.00 0.00 37.50 3.82
1844 1963 0.823356 AATGGTGTGACCCTGTGTGC 60.823 55.000 0.00 0.00 37.50 4.57
1845 1964 1.993701 ATGGTGTGACCCTGTGTGCA 61.994 55.000 0.00 0.00 37.50 4.57
1846 1965 2.186826 GGTGTGACCCTGTGTGCAC 61.187 63.158 10.75 10.75 30.04 4.57
1847 1966 1.153168 GTGTGACCCTGTGTGCACT 60.153 57.895 19.41 0.00 32.69 4.40
1848 1967 1.153188 TGTGACCCTGTGTGCACTG 60.153 57.895 19.41 8.16 32.69 3.66
1849 1968 1.153168 GTGACCCTGTGTGCACTGT 60.153 57.895 19.41 7.28 0.00 3.55
1850 1969 1.153188 TGACCCTGTGTGCACTGTG 60.153 57.895 19.41 2.76 0.00 3.66
1881 2004 9.072375 TCACAGAAGGAAGATACATATACAGAG 57.928 37.037 0.00 0.00 0.00 3.35
1937 2065 3.188786 GTGCCGTGAAGCTAGCCG 61.189 66.667 12.13 7.66 0.00 5.52
1948 2076 3.130227 CTAGCCGGCTACACCCTC 58.870 66.667 32.24 0.00 33.26 4.30
1949 2077 1.756950 CTAGCCGGCTACACCCTCA 60.757 63.158 32.24 11.84 33.26 3.86
1951 2079 4.162690 GCCGGCTACACCCTCAGG 62.163 72.222 22.15 0.00 40.04 3.86
1952 2080 2.363795 CCGGCTACACCCTCAGGA 60.364 66.667 0.00 0.00 36.73 3.86
1953 2081 2.722201 CCGGCTACACCCTCAGGAC 61.722 68.421 0.00 0.00 36.73 3.85
1954 2082 1.682684 CGGCTACACCCTCAGGACT 60.683 63.158 0.00 0.00 36.73 3.85
1955 2083 0.395311 CGGCTACACCCTCAGGACTA 60.395 60.000 0.00 0.00 36.73 2.59
1956 2084 1.404843 GGCTACACCCTCAGGACTAG 58.595 60.000 0.00 0.00 36.73 2.57
1957 2085 1.404843 GCTACACCCTCAGGACTAGG 58.595 60.000 0.00 0.00 36.73 3.02
1958 2086 1.342175 GCTACACCCTCAGGACTAGGT 60.342 57.143 0.00 0.00 36.73 3.08
1959 2087 2.657143 CTACACCCTCAGGACTAGGTC 58.343 57.143 0.00 0.00 36.73 3.85
1960 2088 1.085715 ACACCCTCAGGACTAGGTCT 58.914 55.000 0.00 0.00 36.73 3.85
1961 2089 1.433592 ACACCCTCAGGACTAGGTCTT 59.566 52.381 0.00 0.00 36.73 3.01
1962 2090 1.827969 CACCCTCAGGACTAGGTCTTG 59.172 57.143 0.00 3.85 40.31 3.02
1963 2091 0.827368 CCCTCAGGACTAGGTCTTGC 59.173 60.000 0.00 0.00 39.10 4.01
1964 2092 0.827368 CCTCAGGACTAGGTCTTGCC 59.173 60.000 5.16 0.00 39.10 4.52
1965 2093 0.457851 CTCAGGACTAGGTCTTGCCG 59.542 60.000 5.16 0.00 39.10 5.69
1966 2094 0.251653 TCAGGACTAGGTCTTGCCGT 60.252 55.000 5.16 0.00 39.10 5.68
1967 2095 0.608640 CAGGACTAGGTCTTGCCGTT 59.391 55.000 0.00 0.00 43.70 4.44
1968 2096 1.822990 CAGGACTAGGTCTTGCCGTTA 59.177 52.381 0.00 0.00 43.70 3.18
1969 2097 1.823610 AGGACTAGGTCTTGCCGTTAC 59.176 52.381 0.00 0.00 43.70 2.50
1970 2098 1.547372 GGACTAGGTCTTGCCGTTACA 59.453 52.381 0.00 0.00 43.70 2.41
1971 2099 2.603953 GACTAGGTCTTGCCGTTACAC 58.396 52.381 0.00 0.00 43.70 2.90
1972 2100 1.274447 ACTAGGTCTTGCCGTTACACC 59.726 52.381 0.00 0.00 43.70 4.16
1973 2101 0.609662 TAGGTCTTGCCGTTACACCC 59.390 55.000 0.00 0.00 43.70 4.61
1974 2102 2.030958 GGTCTTGCCGTTACACCCG 61.031 63.158 0.00 0.00 0.00 5.28
1975 2103 1.301165 GTCTTGCCGTTACACCCGT 60.301 57.895 0.00 0.00 0.00 5.28
1976 2104 1.301087 TCTTGCCGTTACACCCGTG 60.301 57.895 0.00 0.00 0.00 4.94
1977 2105 2.280933 TTGCCGTTACACCCGTGG 60.281 61.111 0.00 0.00 34.19 4.94
1978 2106 2.718747 CTTGCCGTTACACCCGTGGA 62.719 60.000 0.00 0.00 34.19 4.02
1979 2107 2.114488 TTGCCGTTACACCCGTGGAT 62.114 55.000 0.00 0.00 34.19 3.41
1980 2108 1.256361 TGCCGTTACACCCGTGGATA 61.256 55.000 0.00 0.00 34.19 2.59
1981 2109 0.108233 GCCGTTACACCCGTGGATAA 60.108 55.000 0.00 0.00 34.19 1.75
1982 2110 1.643880 CCGTTACACCCGTGGATAAC 58.356 55.000 0.00 0.00 34.19 1.89
1983 2111 1.205417 CCGTTACACCCGTGGATAACT 59.795 52.381 0.00 0.00 31.05 2.24
1984 2112 2.533266 CGTTACACCCGTGGATAACTC 58.467 52.381 0.00 0.00 31.05 3.01
1985 2113 2.094597 CGTTACACCCGTGGATAACTCA 60.095 50.000 0.00 0.00 31.05 3.41
1986 2114 3.429822 CGTTACACCCGTGGATAACTCAT 60.430 47.826 0.00 0.00 31.05 2.90
1987 2115 4.202040 CGTTACACCCGTGGATAACTCATA 60.202 45.833 0.00 0.00 31.05 2.15
1988 2116 3.814005 ACACCCGTGGATAACTCATAC 57.186 47.619 0.00 0.00 34.19 2.39
1989 2117 3.101437 ACACCCGTGGATAACTCATACA 58.899 45.455 0.00 0.00 34.19 2.29
1990 2118 3.118884 ACACCCGTGGATAACTCATACAC 60.119 47.826 0.00 0.00 44.11 2.90
2020 2148 8.668510 ACATGATAATGATACAACTCAACCTC 57.331 34.615 0.00 0.00 0.00 3.85
2021 2149 7.716998 ACATGATAATGATACAACTCAACCTCC 59.283 37.037 0.00 0.00 0.00 4.30
2022 2150 6.591935 TGATAATGATACAACTCAACCTCCC 58.408 40.000 0.00 0.00 0.00 4.30
2023 2151 3.933861 ATGATACAACTCAACCTCCCC 57.066 47.619 0.00 0.00 0.00 4.81
2024 2152 1.913419 TGATACAACTCAACCTCCCCC 59.087 52.381 0.00 0.00 0.00 5.40
2025 2153 1.913419 GATACAACTCAACCTCCCCCA 59.087 52.381 0.00 0.00 0.00 4.96
2026 2154 1.061546 TACAACTCAACCTCCCCCAC 58.938 55.000 0.00 0.00 0.00 4.61
2027 2155 0.697854 ACAACTCAACCTCCCCCACT 60.698 55.000 0.00 0.00 0.00 4.00
2028 2156 1.358152 CAACTCAACCTCCCCCACTA 58.642 55.000 0.00 0.00 0.00 2.74
2029 2157 1.279271 CAACTCAACCTCCCCCACTAG 59.721 57.143 0.00 0.00 0.00 2.57
2030 2158 0.492276 ACTCAACCTCCCCCACTAGT 59.508 55.000 0.00 0.00 0.00 2.57
2031 2159 1.720533 ACTCAACCTCCCCCACTAGTA 59.279 52.381 0.00 0.00 0.00 1.82
2032 2160 2.292323 ACTCAACCTCCCCCACTAGTAG 60.292 54.545 0.00 0.00 0.00 2.57
2033 2161 2.005350 TCAACCTCCCCCACTAGTAGA 58.995 52.381 3.59 0.00 0.00 2.59
2034 2162 2.384375 TCAACCTCCCCCACTAGTAGAA 59.616 50.000 3.59 0.00 0.00 2.10
2035 2163 3.178865 CAACCTCCCCCACTAGTAGAAA 58.821 50.000 3.59 0.00 0.00 2.52
2036 2164 3.572661 ACCTCCCCCACTAGTAGAAAA 57.427 47.619 3.59 0.00 0.00 2.29
2037 2165 3.878086 ACCTCCCCCACTAGTAGAAAAA 58.122 45.455 3.59 0.00 0.00 1.94
2056 2184 4.734398 AAAAGGTCAAACATGAAGCACA 57.266 36.364 0.00 0.00 0.00 4.57
2057 2185 4.942761 AAAGGTCAAACATGAAGCACAT 57.057 36.364 0.00 0.00 40.17 3.21
2058 2186 4.942761 AAGGTCAAACATGAAGCACATT 57.057 36.364 0.00 0.00 37.07 2.71
2059 2187 6.403866 AAAGGTCAAACATGAAGCACATTA 57.596 33.333 0.00 0.00 37.07 1.90
2060 2188 5.633830 AGGTCAAACATGAAGCACATTAG 57.366 39.130 0.00 0.00 37.07 1.73
2061 2189 5.072741 AGGTCAAACATGAAGCACATTAGT 58.927 37.500 0.00 0.00 37.07 2.24
2102 2230 7.177498 TCGACACTAATGTGATCAATATTGC 57.823 36.000 10.76 0.00 46.55 3.56
2103 2231 6.202762 TCGACACTAATGTGATCAATATTGCC 59.797 38.462 10.76 5.76 46.55 4.52
2104 2232 6.304356 ACACTAATGTGATCAATATTGCCG 57.696 37.500 10.76 7.15 46.55 5.69
2105 2233 5.239306 ACACTAATGTGATCAATATTGCCGG 59.761 40.000 10.76 0.00 46.55 6.13
2106 2234 5.239306 CACTAATGTGATCAATATTGCCGGT 59.761 40.000 10.76 0.00 46.55 5.28
2107 2235 5.827797 ACTAATGTGATCAATATTGCCGGTT 59.172 36.000 10.76 3.84 0.00 4.44
2108 2236 4.836125 ATGTGATCAATATTGCCGGTTC 57.164 40.909 10.76 3.56 0.00 3.62
2109 2237 2.611751 TGTGATCAATATTGCCGGTTCG 59.388 45.455 10.76 0.00 0.00 3.95
2110 2238 2.869801 GTGATCAATATTGCCGGTTCGA 59.130 45.455 10.76 0.00 0.00 3.71
2111 2239 3.311322 GTGATCAATATTGCCGGTTCGAA 59.689 43.478 10.76 0.00 0.00 3.71
2112 2240 4.024048 GTGATCAATATTGCCGGTTCGAAT 60.024 41.667 10.76 0.00 0.00 3.34
2113 2241 3.961477 TCAATATTGCCGGTTCGAATG 57.039 42.857 10.76 0.00 0.00 2.67
2114 2242 2.616376 TCAATATTGCCGGTTCGAATGG 59.384 45.455 10.76 13.44 0.00 3.16
2118 2246 4.456806 GCCGGTTCGAATGGCTAT 57.543 55.556 27.60 0.00 45.40 2.97
2119 2247 1.941812 GCCGGTTCGAATGGCTATG 59.058 57.895 27.60 5.57 45.40 2.23
2120 2248 1.941812 CCGGTTCGAATGGCTATGC 59.058 57.895 0.00 0.00 0.00 3.14
2121 2249 0.813610 CCGGTTCGAATGGCTATGCA 60.814 55.000 0.00 0.00 0.00 3.96
2122 2250 1.229428 CGGTTCGAATGGCTATGCAT 58.771 50.000 3.79 3.79 0.00 3.96
2123 2251 1.603802 CGGTTCGAATGGCTATGCATT 59.396 47.619 3.54 0.00 0.00 3.56
2124 2252 2.805671 CGGTTCGAATGGCTATGCATTA 59.194 45.455 3.54 0.00 0.00 1.90
2125 2253 3.120546 CGGTTCGAATGGCTATGCATTAG 60.121 47.826 3.54 1.51 0.00 1.73
2126 2254 3.815401 GGTTCGAATGGCTATGCATTAGT 59.185 43.478 3.54 0.00 0.00 2.24
2127 2255 4.319766 GGTTCGAATGGCTATGCATTAGTG 60.320 45.833 3.54 0.00 0.00 2.74
2141 2269 5.611796 GCATTAGTGCCGATTCATAATGA 57.388 39.130 0.00 0.00 45.76 2.57
2142 2270 6.000891 GCATTAGTGCCGATTCATAATGAA 57.999 37.500 0.00 0.00 45.76 2.57
2143 2271 5.853282 GCATTAGTGCCGATTCATAATGAAC 59.147 40.000 0.00 0.00 45.76 3.18
2144 2272 6.373779 CATTAGTGCCGATTCATAATGAACC 58.626 40.000 0.00 0.00 39.45 3.62
2145 2273 4.156455 AGTGCCGATTCATAATGAACCT 57.844 40.909 0.00 0.00 39.45 3.50
2146 2274 4.526970 AGTGCCGATTCATAATGAACCTT 58.473 39.130 0.00 0.00 39.45 3.50
2147 2275 4.949856 AGTGCCGATTCATAATGAACCTTT 59.050 37.500 0.00 0.00 39.45 3.11
2148 2276 6.119536 AGTGCCGATTCATAATGAACCTTTA 58.880 36.000 0.00 0.00 39.45 1.85
2149 2277 6.260936 AGTGCCGATTCATAATGAACCTTTAG 59.739 38.462 0.00 0.00 39.45 1.85
2150 2278 6.038271 GTGCCGATTCATAATGAACCTTTAGT 59.962 38.462 0.00 0.00 39.45 2.24
2151 2279 7.225931 GTGCCGATTCATAATGAACCTTTAGTA 59.774 37.037 0.00 0.00 39.45 1.82
2152 2280 7.225931 TGCCGATTCATAATGAACCTTTAGTAC 59.774 37.037 0.00 0.00 39.45 2.73
2153 2281 7.307811 GCCGATTCATAATGAACCTTTAGTACC 60.308 40.741 0.00 0.00 39.45 3.34
2154 2282 7.095774 CCGATTCATAATGAACCTTTAGTACCG 60.096 40.741 0.00 0.00 39.45 4.02
2155 2283 7.650504 CGATTCATAATGAACCTTTAGTACCGA 59.349 37.037 0.00 0.00 39.45 4.69
2156 2284 9.490379 GATTCATAATGAACCTTTAGTACCGAT 57.510 33.333 0.00 0.00 39.45 4.18
2157 2285 9.847224 ATTCATAATGAACCTTTAGTACCGATT 57.153 29.630 0.00 0.00 39.45 3.34
2158 2286 8.882415 TCATAATGAACCTTTAGTACCGATTC 57.118 34.615 0.00 0.00 0.00 2.52
2159 2287 7.650504 TCATAATGAACCTTTAGTACCGATTCG 59.349 37.037 0.00 0.00 0.00 3.34
2160 2288 4.789012 TGAACCTTTAGTACCGATTCGT 57.211 40.909 5.20 0.00 0.00 3.85
2161 2289 4.487948 TGAACCTTTAGTACCGATTCGTG 58.512 43.478 5.20 0.00 0.00 4.35
2162 2290 2.884827 ACCTTTAGTACCGATTCGTGC 58.115 47.619 5.20 0.00 0.00 5.34
2163 2291 2.199236 CCTTTAGTACCGATTCGTGCC 58.801 52.381 5.20 0.00 0.00 5.01
2164 2292 2.417651 CCTTTAGTACCGATTCGTGCCA 60.418 50.000 5.20 0.00 0.00 4.92
2165 2293 2.282701 TTAGTACCGATTCGTGCCAC 57.717 50.000 5.20 0.00 0.00 5.01
2166 2294 0.099259 TAGTACCGATTCGTGCCACG 59.901 55.000 11.80 11.80 44.19 4.94
2175 2303 3.107661 CGTGCCACGAACCGGTAC 61.108 66.667 12.85 0.00 46.05 3.34
2176 2304 2.341176 GTGCCACGAACCGGTACT 59.659 61.111 8.00 0.00 36.33 2.73
2177 2305 1.586028 GTGCCACGAACCGGTACTA 59.414 57.895 8.00 0.00 36.33 1.82
2178 2306 0.038343 GTGCCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 36.33 2.24
2179 2307 0.678395 TGCCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
2180 2308 1.069823 TGCCACGAACCGGTACTAAAA 59.930 47.619 8.00 0.00 0.00 1.52
2181 2309 1.728425 GCCACGAACCGGTACTAAAAG 59.272 52.381 8.00 0.00 0.00 2.27
2182 2310 2.340337 CCACGAACCGGTACTAAAAGG 58.660 52.381 8.00 0.00 0.00 3.11
2183 2311 2.340337 CACGAACCGGTACTAAAAGGG 58.660 52.381 8.00 0.00 0.00 3.95
2184 2312 1.970640 ACGAACCGGTACTAAAAGGGT 59.029 47.619 8.00 0.00 0.00 4.34
2185 2313 2.289010 ACGAACCGGTACTAAAAGGGTG 60.289 50.000 8.00 0.00 0.00 4.61
2186 2314 2.703416 GAACCGGTACTAAAAGGGTGG 58.297 52.381 8.00 0.00 0.00 4.61
2187 2315 1.733385 ACCGGTACTAAAAGGGTGGT 58.267 50.000 4.49 0.00 0.00 4.16
2188 2316 1.348696 ACCGGTACTAAAAGGGTGGTG 59.651 52.381 4.49 0.00 0.00 4.17
2189 2317 1.339342 CCGGTACTAAAAGGGTGGTGG 60.339 57.143 0.00 0.00 0.00 4.61
2190 2318 1.830279 GGTACTAAAAGGGTGGTGGC 58.170 55.000 0.00 0.00 0.00 5.01
2191 2319 1.074244 GGTACTAAAAGGGTGGTGGCA 59.926 52.381 0.00 0.00 0.00 4.92
2192 2320 2.433436 GTACTAAAAGGGTGGTGGCAG 58.567 52.381 0.00 0.00 0.00 4.85
2193 2321 0.112412 ACTAAAAGGGTGGTGGCAGG 59.888 55.000 0.00 0.00 0.00 4.85
2194 2322 1.228737 TAAAAGGGTGGTGGCAGGC 60.229 57.895 0.00 0.00 0.00 4.85
2195 2323 1.725169 TAAAAGGGTGGTGGCAGGCT 61.725 55.000 0.00 0.00 0.00 4.58
2196 2324 3.815407 AAAGGGTGGTGGCAGGCTG 62.815 63.158 10.94 10.94 0.00 4.85
2225 2353 4.678743 GGCCCCACGAGCCCTTTT 62.679 66.667 0.00 0.00 45.16 2.27
2226 2354 2.353573 GCCCCACGAGCCCTTTTA 59.646 61.111 0.00 0.00 0.00 1.52
2227 2355 1.749258 GCCCCACGAGCCCTTTTAG 60.749 63.158 0.00 0.00 0.00 1.85
2228 2356 1.683441 CCCCACGAGCCCTTTTAGT 59.317 57.895 0.00 0.00 0.00 2.24
2229 2357 0.676782 CCCCACGAGCCCTTTTAGTG 60.677 60.000 0.00 0.00 0.00 2.74
2230 2358 0.323629 CCCACGAGCCCTTTTAGTGA 59.676 55.000 0.00 0.00 35.03 3.41
2231 2359 1.439679 CCACGAGCCCTTTTAGTGAC 58.560 55.000 0.00 0.00 35.03 3.67
2232 2360 1.068474 CACGAGCCCTTTTAGTGACG 58.932 55.000 0.00 0.00 35.03 4.35
2233 2361 0.037605 ACGAGCCCTTTTAGTGACGG 60.038 55.000 0.00 0.00 0.00 4.79
2234 2362 0.037605 CGAGCCCTTTTAGTGACGGT 60.038 55.000 0.00 0.00 0.00 4.83
2235 2363 1.607251 CGAGCCCTTTTAGTGACGGTT 60.607 52.381 0.00 0.00 0.00 4.44
2236 2364 2.501261 GAGCCCTTTTAGTGACGGTTT 58.499 47.619 0.00 0.00 0.00 3.27
2237 2365 2.225727 GAGCCCTTTTAGTGACGGTTTG 59.774 50.000 0.00 0.00 0.00 2.93
2238 2366 1.951602 GCCCTTTTAGTGACGGTTTGT 59.048 47.619 0.00 0.00 0.00 2.83
2239 2367 2.287368 GCCCTTTTAGTGACGGTTTGTG 60.287 50.000 0.00 0.00 0.00 3.33
2240 2368 3.207778 CCCTTTTAGTGACGGTTTGTGA 58.792 45.455 0.00 0.00 0.00 3.58
2241 2369 3.002965 CCCTTTTAGTGACGGTTTGTGAC 59.997 47.826 0.00 0.00 34.56 3.67
2242 2370 3.302870 CCTTTTAGTGACGGTTTGTGACG 60.303 47.826 0.00 0.00 39.95 4.35
2243 2371 1.855513 TTAGTGACGGTTTGTGACGG 58.144 50.000 0.00 0.00 39.95 4.79
2244 2372 0.746063 TAGTGACGGTTTGTGACGGT 59.254 50.000 0.00 0.00 39.95 4.83
2245 2373 0.746063 AGTGACGGTTTGTGACGGTA 59.254 50.000 0.00 0.00 39.95 4.02
2246 2374 1.134226 GTGACGGTTTGTGACGGTAG 58.866 55.000 0.00 0.00 41.32 3.18
2247 2375 0.746063 TGACGGTTTGTGACGGTAGT 59.254 50.000 0.00 0.00 41.32 2.73
2248 2376 1.952990 TGACGGTTTGTGACGGTAGTA 59.047 47.619 0.00 0.00 41.32 1.82
2249 2377 2.360483 TGACGGTTTGTGACGGTAGTAA 59.640 45.455 0.00 0.00 41.32 2.24
2250 2378 3.181482 TGACGGTTTGTGACGGTAGTAAA 60.181 43.478 0.00 0.00 41.32 2.01
2251 2379 3.383761 ACGGTTTGTGACGGTAGTAAAG 58.616 45.455 0.00 0.00 39.70 1.85
2252 2380 2.733026 CGGTTTGTGACGGTAGTAAAGG 59.267 50.000 0.00 0.00 0.00 3.11
2253 2381 3.732212 GGTTTGTGACGGTAGTAAAGGT 58.268 45.455 0.00 0.00 0.00 3.50
2254 2382 3.742882 GGTTTGTGACGGTAGTAAAGGTC 59.257 47.826 0.00 0.00 0.00 3.85
2255 2383 4.502087 GGTTTGTGACGGTAGTAAAGGTCT 60.502 45.833 0.00 0.00 0.00 3.85
2256 2384 5.278957 GGTTTGTGACGGTAGTAAAGGTCTA 60.279 44.000 0.00 0.00 0.00 2.59
2257 2385 6.215845 GTTTGTGACGGTAGTAAAGGTCTAA 58.784 40.000 0.00 0.00 0.00 2.10
2258 2386 5.376854 TGTGACGGTAGTAAAGGTCTAAC 57.623 43.478 0.00 0.00 0.00 2.34
2259 2387 4.218417 TGTGACGGTAGTAAAGGTCTAACC 59.782 45.833 0.00 0.00 38.99 2.85
2275 2403 6.155136 GGTCTAACCTATAGTACCGATTTGC 58.845 44.000 0.00 0.00 34.73 3.68
2276 2404 5.855395 GTCTAACCTATAGTACCGATTTGCG 59.145 44.000 0.00 0.00 40.47 4.85
2277 2405 4.660789 AACCTATAGTACCGATTTGCGT 57.339 40.909 0.00 0.00 38.67 5.24
2278 2406 4.234530 ACCTATAGTACCGATTTGCGTC 57.765 45.455 0.00 0.00 38.67 5.19
2279 2407 3.633525 ACCTATAGTACCGATTTGCGTCA 59.366 43.478 0.00 0.00 38.67 4.35
2280 2408 4.280174 ACCTATAGTACCGATTTGCGTCAT 59.720 41.667 0.00 0.00 38.67 3.06
2281 2409 4.857588 CCTATAGTACCGATTTGCGTCATC 59.142 45.833 0.00 0.00 38.67 2.92
2282 2410 2.665649 AGTACCGATTTGCGTCATCA 57.334 45.000 0.00 0.00 38.67 3.07
2283 2411 2.967362 AGTACCGATTTGCGTCATCAA 58.033 42.857 0.00 0.00 38.67 2.57
2284 2412 2.671396 AGTACCGATTTGCGTCATCAAC 59.329 45.455 0.00 0.00 38.67 3.18
2285 2413 0.802494 ACCGATTTGCGTCATCAACC 59.198 50.000 0.00 0.00 38.67 3.77
2286 2414 0.247655 CCGATTTGCGTCATCAACCG 60.248 55.000 0.00 0.00 38.67 4.44
2287 2415 0.247655 CGATTTGCGTCATCAACCGG 60.248 55.000 0.00 0.00 34.64 5.28
2288 2416 0.523335 GATTTGCGTCATCAACCGGC 60.523 55.000 0.00 0.00 0.00 6.13
2289 2417 1.240641 ATTTGCGTCATCAACCGGCA 61.241 50.000 0.00 0.00 0.00 5.69
2290 2418 2.123988 TTTGCGTCATCAACCGGCAC 62.124 55.000 0.00 0.00 32.64 5.01
2291 2419 2.742372 GCGTCATCAACCGGCACT 60.742 61.111 0.00 0.00 0.00 4.40
2292 2420 1.447140 GCGTCATCAACCGGCACTA 60.447 57.895 0.00 0.00 0.00 2.74
2293 2421 1.693083 GCGTCATCAACCGGCACTAC 61.693 60.000 0.00 0.00 0.00 2.73
2294 2422 0.389296 CGTCATCAACCGGCACTACA 60.389 55.000 0.00 0.00 0.00 2.74
2295 2423 1.359848 GTCATCAACCGGCACTACAG 58.640 55.000 0.00 0.00 0.00 2.74
2296 2424 1.067142 GTCATCAACCGGCACTACAGA 60.067 52.381 0.00 0.00 0.00 3.41
2297 2425 1.204704 TCATCAACCGGCACTACAGAG 59.795 52.381 0.00 0.00 0.00 3.35
2298 2426 1.066858 CATCAACCGGCACTACAGAGT 60.067 52.381 0.00 0.00 35.80 3.24
2299 2427 0.601558 TCAACCGGCACTACAGAGTC 59.398 55.000 0.00 0.00 31.73 3.36
2300 2428 0.603569 CAACCGGCACTACAGAGTCT 59.396 55.000 0.00 0.00 31.73 3.24
2301 2429 1.000955 CAACCGGCACTACAGAGTCTT 59.999 52.381 0.00 0.00 31.73 3.01
2302 2430 2.211250 ACCGGCACTACAGAGTCTTA 57.789 50.000 0.00 0.00 31.73 2.10
2303 2431 2.522185 ACCGGCACTACAGAGTCTTAA 58.478 47.619 0.00 0.00 31.73 1.85
2304 2432 2.230750 ACCGGCACTACAGAGTCTTAAC 59.769 50.000 0.00 0.00 31.73 2.01
2305 2433 2.416972 CCGGCACTACAGAGTCTTAACC 60.417 54.545 0.00 0.00 31.73 2.85
2306 2434 2.492484 CGGCACTACAGAGTCTTAACCT 59.508 50.000 0.00 0.00 31.73 3.50
2307 2435 3.693085 CGGCACTACAGAGTCTTAACCTA 59.307 47.826 0.00 0.00 31.73 3.08
2308 2436 4.338682 CGGCACTACAGAGTCTTAACCTAT 59.661 45.833 0.00 0.00 31.73 2.57
2309 2437 5.530171 CGGCACTACAGAGTCTTAACCTATA 59.470 44.000 0.00 0.00 31.73 1.31
2310 2438 6.293516 CGGCACTACAGAGTCTTAACCTATAG 60.294 46.154 0.00 0.00 31.73 1.31
2311 2439 6.546772 GGCACTACAGAGTCTTAACCTATAGT 59.453 42.308 0.00 0.00 31.73 2.12
2312 2440 7.255208 GGCACTACAGAGTCTTAACCTATAGTC 60.255 44.444 0.00 0.00 31.73 2.59
2313 2441 7.499895 GCACTACAGAGTCTTAACCTATAGTCT 59.500 40.741 0.00 0.00 31.73 3.24
2314 2442 9.048446 CACTACAGAGTCTTAACCTATAGTCTC 57.952 40.741 0.00 0.00 31.73 3.36
2315 2443 7.927629 ACTACAGAGTCTTAACCTATAGTCTCG 59.072 40.741 0.00 0.00 33.60 4.04
2316 2444 6.887013 ACAGAGTCTTAACCTATAGTCTCGA 58.113 40.000 0.00 0.00 33.60 4.04
2317 2445 7.511268 ACAGAGTCTTAACCTATAGTCTCGAT 58.489 38.462 0.00 0.00 33.60 3.59
2318 2446 7.994334 ACAGAGTCTTAACCTATAGTCTCGATT 59.006 37.037 0.00 0.00 33.60 3.34
2319 2447 8.286800 CAGAGTCTTAACCTATAGTCTCGATTG 58.713 40.741 0.00 0.00 33.60 2.67
2320 2448 8.212312 AGAGTCTTAACCTATAGTCTCGATTGA 58.788 37.037 0.00 0.00 33.60 2.57
2321 2449 8.749026 AGTCTTAACCTATAGTCTCGATTGAA 57.251 34.615 0.00 0.00 0.00 2.69
2322 2450 8.842280 AGTCTTAACCTATAGTCTCGATTGAAG 58.158 37.037 0.00 0.00 0.00 3.02
2323 2451 8.838365 GTCTTAACCTATAGTCTCGATTGAAGA 58.162 37.037 0.00 0.00 0.00 2.87
2324 2452 8.838365 TCTTAACCTATAGTCTCGATTGAAGAC 58.162 37.037 0.00 0.00 0.00 3.01
2325 2453 8.515695 TTAACCTATAGTCTCGATTGAAGACA 57.484 34.615 12.35 0.00 35.23 3.41
2326 2454 6.380095 ACCTATAGTCTCGATTGAAGACAC 57.620 41.667 12.35 0.00 35.23 3.67
2327 2455 5.886474 ACCTATAGTCTCGATTGAAGACACA 59.114 40.000 12.35 3.81 35.23 3.72
2328 2456 6.377429 ACCTATAGTCTCGATTGAAGACACAA 59.623 38.462 12.35 0.00 35.23 3.33
2329 2457 7.093902 ACCTATAGTCTCGATTGAAGACACAAA 60.094 37.037 12.35 0.63 35.23 2.83
2330 2458 6.952935 ATAGTCTCGATTGAAGACACAAAC 57.047 37.500 12.35 0.00 35.23 2.93
2331 2459 4.058817 AGTCTCGATTGAAGACACAAACC 58.941 43.478 12.35 0.00 35.23 3.27
2332 2460 3.057019 TCTCGATTGAAGACACAAACCG 58.943 45.455 0.00 0.00 33.44 4.44
2333 2461 2.139917 TCGATTGAAGACACAAACCGG 58.860 47.619 0.00 0.00 33.44 5.28
2334 2462 1.399727 CGATTGAAGACACAAACCGGC 60.400 52.381 0.00 0.00 33.44 6.13
2335 2463 1.606668 GATTGAAGACACAAACCGGCA 59.393 47.619 0.00 0.00 33.44 5.69
2336 2464 0.736053 TTGAAGACACAAACCGGCAC 59.264 50.000 0.00 0.00 0.00 5.01
2337 2465 0.107410 TGAAGACACAAACCGGCACT 60.107 50.000 0.00 0.00 0.00 4.40
2338 2466 1.139256 TGAAGACACAAACCGGCACTA 59.861 47.619 0.00 0.00 0.00 2.74
2339 2467 2.224426 TGAAGACACAAACCGGCACTAT 60.224 45.455 0.00 0.00 0.00 2.12
2340 2468 3.007074 TGAAGACACAAACCGGCACTATA 59.993 43.478 0.00 0.00 0.00 1.31
2341 2469 3.247006 AGACACAAACCGGCACTATAG 57.753 47.619 0.00 0.00 0.00 1.31
2342 2470 2.829720 AGACACAAACCGGCACTATAGA 59.170 45.455 6.78 0.00 0.00 1.98
2343 2471 3.119101 AGACACAAACCGGCACTATAGAG 60.119 47.826 6.78 0.00 0.00 2.43
2344 2472 1.933853 CACAAACCGGCACTATAGAGC 59.066 52.381 13.19 13.19 0.00 4.09
2345 2473 1.209128 CAAACCGGCACTATAGAGCG 58.791 55.000 14.82 10.44 32.29 5.03
2346 2474 0.104304 AAACCGGCACTATAGAGCGG 59.896 55.000 21.81 21.81 34.03 5.52
2347 2475 2.651361 CCGGCACTATAGAGCGGG 59.349 66.667 26.27 26.27 43.06 6.13
2348 2476 2.201022 CCGGCACTATAGAGCGGGT 61.201 63.158 28.92 0.00 43.41 5.28
2349 2477 1.286260 CGGCACTATAGAGCGGGTC 59.714 63.158 18.03 0.00 32.29 4.46
2350 2478 1.173444 CGGCACTATAGAGCGGGTCT 61.173 60.000 18.03 14.80 39.59 3.85
2351 2479 1.881072 CGGCACTATAGAGCGGGTCTA 60.881 57.143 18.23 18.23 42.22 2.59
2352 2480 2.236766 GGCACTATAGAGCGGGTCTAA 58.763 52.381 19.60 9.24 41.31 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.032813 AGGGAACGGGAGGAATACGA 60.033 55.000 0.00 0.00 0.00 3.43
29 30 3.378427 AGATTGCTTTTGCCGGAGATTAC 59.622 43.478 5.05 0.00 46.87 1.89
48 49 9.844257 CCTTATTATCAGGTTTTGAAGAGAGAT 57.156 33.333 0.00 0.00 39.77 2.75
62 63 6.201044 CGTTCACTGCTTACCTTATTATCAGG 59.799 42.308 0.00 0.00 37.45 3.86
103 105 5.870433 TCAAATGGCTTGCATTTTCATGTAG 59.130 36.000 0.00 0.00 34.76 2.74
143 146 0.741915 GAAGATCGTCTCGGCCTCTT 59.258 55.000 0.00 0.10 0.00 2.85
175 178 1.078848 GGGTCTAGTGCAGGCAGTG 60.079 63.158 11.72 2.66 0.00 3.66
203 206 3.032609 GATCAGTCGGCCGATGCG 61.033 66.667 33.58 22.01 38.85 4.73
293 296 4.704103 TGGGCTCGTGGCTCCTCT 62.704 66.667 11.00 0.00 41.66 3.69
314 317 1.170919 GGTAGTAGATCGGCGAGCCA 61.171 60.000 22.74 5.03 35.37 4.75
315 318 0.890090 AGGTAGTAGATCGGCGAGCC 60.890 60.000 22.74 12.69 0.00 4.70
355 358 3.827898 GAGCGCGCAGGGTAGTCT 61.828 66.667 35.10 8.99 44.71 3.24
418 421 3.386237 GCCCTGGCACGAGAGAGT 61.386 66.667 2.58 0.00 41.49 3.24
572 624 2.493035 CGGTGCATGCATACCAGATTA 58.507 47.619 25.64 0.00 36.76 1.75
635 687 4.530857 GCGCAGGGTAGTCGGCAT 62.531 66.667 0.30 0.00 0.00 4.40
968 1024 1.597461 GCTGGGAGCGACCTAAACT 59.403 57.895 1.45 0.00 38.98 2.66
969 1025 1.449778 GGCTGGGAGCGACCTAAAC 60.450 63.158 1.45 0.00 43.62 2.01
1031 1087 2.039613 AGAAGGAGAAGCAGGACCAAAG 59.960 50.000 0.00 0.00 0.00 2.77
1050 1106 1.268625 ACACACTTACGTGCGATGAGA 59.731 47.619 0.00 0.00 45.10 3.27
1069 1150 5.751243 ATGTCCACGGAGCAAAATAATAC 57.249 39.130 0.00 0.00 0.00 1.89
1070 1151 6.767524 AAATGTCCACGGAGCAAAATAATA 57.232 33.333 0.00 0.00 0.00 0.98
1071 1152 5.659440 AAATGTCCACGGAGCAAAATAAT 57.341 34.783 0.00 0.00 0.00 1.28
1072 1153 5.010112 TGAAAATGTCCACGGAGCAAAATAA 59.990 36.000 0.00 0.00 0.00 1.40
1073 1154 4.520874 TGAAAATGTCCACGGAGCAAAATA 59.479 37.500 0.00 0.00 0.00 1.40
1074 1155 3.320541 TGAAAATGTCCACGGAGCAAAAT 59.679 39.130 0.00 0.00 0.00 1.82
1075 1156 2.690497 TGAAAATGTCCACGGAGCAAAA 59.310 40.909 0.00 0.00 0.00 2.44
1076 1157 2.302260 TGAAAATGTCCACGGAGCAAA 58.698 42.857 0.00 0.00 0.00 3.68
1077 1158 1.974265 TGAAAATGTCCACGGAGCAA 58.026 45.000 0.00 0.00 0.00 3.91
1078 1159 2.083774 GATGAAAATGTCCACGGAGCA 58.916 47.619 0.00 0.00 0.00 4.26
1079 1160 2.083774 TGATGAAAATGTCCACGGAGC 58.916 47.619 0.00 0.00 0.00 4.70
1080 1161 3.599343 TCTGATGAAAATGTCCACGGAG 58.401 45.455 0.00 0.00 0.00 4.63
1081 1162 3.694043 TCTGATGAAAATGTCCACGGA 57.306 42.857 0.00 0.00 0.00 4.69
1082 1163 6.260714 TGAATATCTGATGAAAATGTCCACGG 59.739 38.462 0.00 0.00 0.00 4.94
1083 1164 7.011763 ACTGAATATCTGATGAAAATGTCCACG 59.988 37.037 0.00 0.00 0.00 4.94
1084 1165 8.218338 ACTGAATATCTGATGAAAATGTCCAC 57.782 34.615 0.00 0.00 0.00 4.02
1085 1166 8.680001 CAACTGAATATCTGATGAAAATGTCCA 58.320 33.333 0.00 0.00 0.00 4.02
1086 1167 8.133627 CCAACTGAATATCTGATGAAAATGTCC 58.866 37.037 0.00 0.00 0.00 4.02
1087 1168 8.896744 TCCAACTGAATATCTGATGAAAATGTC 58.103 33.333 0.00 0.00 0.00 3.06
1088 1169 8.812513 TCCAACTGAATATCTGATGAAAATGT 57.187 30.769 0.00 0.00 0.00 2.71
1413 1500 5.247862 TCAAGTAGGTACACAGACGTATGA 58.752 41.667 18.55 0.00 0.00 2.15
1452 1539 1.331756 ACATACGTACGTAGAAGGCGG 59.668 52.381 29.65 15.97 33.77 6.13
1453 1540 2.633299 GACATACGTACGTAGAAGGCG 58.367 52.381 29.65 16.70 33.77 5.52
1454 1541 2.633299 CGACATACGTACGTAGAAGGC 58.367 52.381 29.65 22.62 37.22 4.35
1488 1581 1.222936 GCAGCTGGCTAGTGGTGAT 59.777 57.895 17.12 0.00 40.25 3.06
1541 1651 8.309163 ACATGAACCGTACGTTTTTATTCTTA 57.691 30.769 15.21 0.00 33.74 2.10
1734 1853 2.492484 ACTCCGACTGTAGATTGTGACC 59.508 50.000 0.00 0.00 0.00 4.02
1738 1857 5.717078 TTGTAACTCCGACTGTAGATTGT 57.283 39.130 0.00 0.00 0.00 2.71
1833 1952 0.748005 AACACAGTGCACACAGGGTC 60.748 55.000 21.04 0.00 33.10 4.46
1838 1957 2.682155 TGAGTAACACAGTGCACACA 57.318 45.000 21.04 1.28 0.00 3.72
1849 1968 6.911250 TGTATCTTCCTTCTGTGAGTAACA 57.089 37.500 0.00 0.00 37.22 2.41
1881 2004 1.153147 GGGATCGGAGGTTGCCTTC 60.153 63.158 0.00 0.00 31.76 3.46
1937 2065 1.404843 CTAGTCCTGAGGGTGTAGCC 58.595 60.000 0.00 0.00 0.00 3.93
1948 2076 0.608640 AACGGCAAGACCTAGTCCTG 59.391 55.000 0.00 0.00 35.61 3.86
1949 2077 1.823610 GTAACGGCAAGACCTAGTCCT 59.176 52.381 0.00 0.00 35.61 3.85
1951 2079 2.603953 GTGTAACGGCAAGACCTAGTC 58.396 52.381 0.00 0.00 35.61 2.59
1952 2080 1.274447 GGTGTAACGGCAAGACCTAGT 59.726 52.381 0.00 0.00 38.12 2.57
1953 2081 1.405121 GGGTGTAACGGCAAGACCTAG 60.405 57.143 0.00 0.00 38.12 3.02
1954 2082 0.609662 GGGTGTAACGGCAAGACCTA 59.390 55.000 0.00 0.00 38.12 3.08
1955 2083 1.373812 GGGTGTAACGGCAAGACCT 59.626 57.895 0.00 0.00 38.12 3.85
1956 2084 2.030958 CGGGTGTAACGGCAAGACC 61.031 63.158 0.00 0.00 38.12 3.85
1957 2085 1.301165 ACGGGTGTAACGGCAAGAC 60.301 57.895 0.00 0.00 38.12 3.01
1958 2086 1.301087 CACGGGTGTAACGGCAAGA 60.301 57.895 0.00 0.00 38.12 3.02
1959 2087 2.322081 CCACGGGTGTAACGGCAAG 61.322 63.158 0.00 0.00 38.12 4.01
1960 2088 2.114488 ATCCACGGGTGTAACGGCAA 62.114 55.000 0.00 0.00 38.12 4.52
1961 2089 1.256361 TATCCACGGGTGTAACGGCA 61.256 55.000 0.00 0.00 38.12 5.69
1962 2090 0.108233 TTATCCACGGGTGTAACGGC 60.108 55.000 0.00 0.00 38.12 5.68
1963 2091 1.205417 AGTTATCCACGGGTGTAACGG 59.795 52.381 0.00 0.00 38.12 4.44
1964 2092 2.094597 TGAGTTATCCACGGGTGTAACG 60.095 50.000 0.00 0.00 38.12 3.18
1965 2093 3.598019 TGAGTTATCCACGGGTGTAAC 57.402 47.619 0.00 2.22 0.00 2.50
1966 2094 4.710865 TGTATGAGTTATCCACGGGTGTAA 59.289 41.667 0.00 0.00 0.00 2.41
1967 2095 4.098349 GTGTATGAGTTATCCACGGGTGTA 59.902 45.833 0.00 0.00 0.00 2.90
1968 2096 3.101437 TGTATGAGTTATCCACGGGTGT 58.899 45.455 0.00 0.00 0.00 4.16
1969 2097 3.118920 TGTGTATGAGTTATCCACGGGTG 60.119 47.826 0.00 0.00 0.00 4.61
1970 2098 3.101437 TGTGTATGAGTTATCCACGGGT 58.899 45.455 0.00 0.00 0.00 5.28
1971 2099 3.812156 TGTGTATGAGTTATCCACGGG 57.188 47.619 0.00 0.00 0.00 5.28
1972 2100 7.599171 TGTATATGTGTATGAGTTATCCACGG 58.401 38.462 0.00 0.00 0.00 4.94
1973 2101 9.076596 CATGTATATGTGTATGAGTTATCCACG 57.923 37.037 0.00 0.00 0.00 4.94
1994 2122 9.764363 GAGGTTGAGTTGTATCATTATCATGTA 57.236 33.333 0.00 0.00 0.00 2.29
1995 2123 7.716998 GGAGGTTGAGTTGTATCATTATCATGT 59.283 37.037 0.00 0.00 0.00 3.21
1996 2124 7.173907 GGGAGGTTGAGTTGTATCATTATCATG 59.826 40.741 0.00 0.00 0.00 3.07
1997 2125 7.227156 GGGAGGTTGAGTTGTATCATTATCAT 58.773 38.462 0.00 0.00 0.00 2.45
1998 2126 6.409234 GGGGAGGTTGAGTTGTATCATTATCA 60.409 42.308 0.00 0.00 0.00 2.15
1999 2127 5.998363 GGGGAGGTTGAGTTGTATCATTATC 59.002 44.000 0.00 0.00 0.00 1.75
2000 2128 5.163088 GGGGGAGGTTGAGTTGTATCATTAT 60.163 44.000 0.00 0.00 0.00 1.28
2001 2129 4.165372 GGGGGAGGTTGAGTTGTATCATTA 59.835 45.833 0.00 0.00 0.00 1.90
2002 2130 3.053619 GGGGGAGGTTGAGTTGTATCATT 60.054 47.826 0.00 0.00 0.00 2.57
2003 2131 2.509964 GGGGGAGGTTGAGTTGTATCAT 59.490 50.000 0.00 0.00 0.00 2.45
2004 2132 1.913419 GGGGGAGGTTGAGTTGTATCA 59.087 52.381 0.00 0.00 0.00 2.15
2005 2133 1.913419 TGGGGGAGGTTGAGTTGTATC 59.087 52.381 0.00 0.00 0.00 2.24
2006 2134 1.633945 GTGGGGGAGGTTGAGTTGTAT 59.366 52.381 0.00 0.00 0.00 2.29
2007 2135 1.061546 GTGGGGGAGGTTGAGTTGTA 58.938 55.000 0.00 0.00 0.00 2.41
2008 2136 0.697854 AGTGGGGGAGGTTGAGTTGT 60.698 55.000 0.00 0.00 0.00 3.32
2009 2137 1.279271 CTAGTGGGGGAGGTTGAGTTG 59.721 57.143 0.00 0.00 0.00 3.16
2010 2138 1.132495 ACTAGTGGGGGAGGTTGAGTT 60.132 52.381 0.00 0.00 0.00 3.01
2011 2139 0.492276 ACTAGTGGGGGAGGTTGAGT 59.508 55.000 0.00 0.00 0.00 3.41
2012 2140 2.024273 TCTACTAGTGGGGGAGGTTGAG 60.024 54.545 5.39 0.00 0.00 3.02
2013 2141 2.005350 TCTACTAGTGGGGGAGGTTGA 58.995 52.381 5.39 0.00 0.00 3.18
2014 2142 2.544844 TCTACTAGTGGGGGAGGTTG 57.455 55.000 5.39 0.00 0.00 3.77
2015 2143 3.572661 TTTCTACTAGTGGGGGAGGTT 57.427 47.619 5.39 0.00 0.00 3.50
2016 2144 3.572661 TTTTCTACTAGTGGGGGAGGT 57.427 47.619 5.39 0.00 0.00 3.85
2034 2162 5.083533 TGTGCTTCATGTTTGACCTTTTT 57.916 34.783 0.00 0.00 0.00 1.94
2035 2163 4.734398 TGTGCTTCATGTTTGACCTTTT 57.266 36.364 0.00 0.00 0.00 2.27
2036 2164 4.942761 ATGTGCTTCATGTTTGACCTTT 57.057 36.364 0.00 0.00 35.19 3.11
2037 2165 4.942761 AATGTGCTTCATGTTTGACCTT 57.057 36.364 0.00 0.00 36.81 3.50
2038 2166 5.048504 CACTAATGTGCTTCATGTTTGACCT 60.049 40.000 0.00 0.00 37.38 3.85
2039 2167 5.156355 CACTAATGTGCTTCATGTTTGACC 58.844 41.667 0.00 0.00 37.38 4.02
2076 2204 8.285394 GCAATATTGATCACATTAGTGTCGATT 58.715 33.333 19.73 0.00 46.01 3.34
2077 2205 7.095060 GGCAATATTGATCACATTAGTGTCGAT 60.095 37.037 19.73 0.00 46.01 3.59
2078 2206 6.202762 GGCAATATTGATCACATTAGTGTCGA 59.797 38.462 19.73 0.00 46.01 4.20
2079 2207 6.365839 GGCAATATTGATCACATTAGTGTCG 58.634 40.000 19.73 0.00 46.01 4.35
2080 2208 6.365839 CGGCAATATTGATCACATTAGTGTC 58.634 40.000 19.73 0.00 46.01 3.67
2081 2209 5.239306 CCGGCAATATTGATCACATTAGTGT 59.761 40.000 19.73 0.00 46.01 3.55
2083 2211 5.376625 ACCGGCAATATTGATCACATTAGT 58.623 37.500 19.73 0.29 0.00 2.24
2084 2212 5.947228 ACCGGCAATATTGATCACATTAG 57.053 39.130 19.73 0.00 0.00 1.73
2085 2213 5.049749 CGAACCGGCAATATTGATCACATTA 60.050 40.000 19.73 0.00 0.00 1.90
2086 2214 4.261155 CGAACCGGCAATATTGATCACATT 60.261 41.667 19.73 4.94 0.00 2.71
2087 2215 3.250762 CGAACCGGCAATATTGATCACAT 59.749 43.478 19.73 0.04 0.00 3.21
2088 2216 2.611751 CGAACCGGCAATATTGATCACA 59.388 45.455 19.73 0.00 0.00 3.58
2089 2217 2.869801 TCGAACCGGCAATATTGATCAC 59.130 45.455 19.73 4.94 0.00 3.06
2090 2218 3.186702 TCGAACCGGCAATATTGATCA 57.813 42.857 19.73 0.00 0.00 2.92
2091 2219 4.466828 CATTCGAACCGGCAATATTGATC 58.533 43.478 19.73 9.07 0.00 2.92
2092 2220 3.253188 CCATTCGAACCGGCAATATTGAT 59.747 43.478 19.73 0.00 0.00 2.57
2093 2221 2.616376 CCATTCGAACCGGCAATATTGA 59.384 45.455 19.73 0.00 0.00 2.57
2094 2222 2.858260 GCCATTCGAACCGGCAATATTG 60.858 50.000 27.39 11.27 45.52 1.90
2095 2223 1.336755 GCCATTCGAACCGGCAATATT 59.663 47.619 27.39 0.00 45.52 1.28
2096 2224 0.951558 GCCATTCGAACCGGCAATAT 59.048 50.000 27.39 0.00 45.52 1.28
2097 2225 2.399856 GCCATTCGAACCGGCAATA 58.600 52.632 27.39 0.00 45.52 1.90
2098 2226 3.196648 GCCATTCGAACCGGCAAT 58.803 55.556 27.39 0.00 45.52 3.56
2101 2229 1.941812 CATAGCCATTCGAACCGGC 59.058 57.895 25.83 25.83 46.62 6.13
2102 2230 0.813610 TGCATAGCCATTCGAACCGG 60.814 55.000 0.00 5.43 0.00 5.28
2103 2231 1.229428 ATGCATAGCCATTCGAACCG 58.771 50.000 0.00 0.00 0.00 4.44
2104 2232 3.815401 ACTAATGCATAGCCATTCGAACC 59.185 43.478 0.00 0.00 36.80 3.62
2105 2233 4.776743 CACTAATGCATAGCCATTCGAAC 58.223 43.478 0.00 0.00 36.80 3.95
2116 2244 7.390162 TTCATTATGAATCGGCACTAATGCATA 59.610 33.333 3.20 0.00 41.77 3.14
2117 2245 6.207221 TTCATTATGAATCGGCACTAATGCAT 59.793 34.615 3.20 0.00 41.77 3.96
2118 2246 5.530543 TTCATTATGAATCGGCACTAATGCA 59.469 36.000 3.20 0.00 41.77 3.96
2119 2247 5.853282 GTTCATTATGAATCGGCACTAATGC 59.147 40.000 11.01 0.00 44.03 3.56
2120 2248 6.205464 AGGTTCATTATGAATCGGCACTAATG 59.795 38.462 11.01 0.00 42.12 1.90
2121 2249 6.299141 AGGTTCATTATGAATCGGCACTAAT 58.701 36.000 11.01 0.00 42.12 1.73
2122 2250 5.680619 AGGTTCATTATGAATCGGCACTAA 58.319 37.500 11.01 0.00 42.12 2.24
2123 2251 5.290493 AGGTTCATTATGAATCGGCACTA 57.710 39.130 11.01 0.00 42.12 2.74
2124 2252 4.156455 AGGTTCATTATGAATCGGCACT 57.844 40.909 11.01 1.26 42.12 4.40
2125 2253 4.900635 AAGGTTCATTATGAATCGGCAC 57.099 40.909 11.01 0.00 42.12 5.01
2126 2254 6.119536 ACTAAAGGTTCATTATGAATCGGCA 58.880 36.000 11.01 0.56 42.12 5.69
2127 2255 6.619801 ACTAAAGGTTCATTATGAATCGGC 57.380 37.500 11.01 0.00 42.12 5.54
2128 2256 7.095774 CGGTACTAAAGGTTCATTATGAATCGG 60.096 40.741 11.01 6.48 42.12 4.18
2129 2257 7.650504 TCGGTACTAAAGGTTCATTATGAATCG 59.349 37.037 11.01 0.58 42.12 3.34
2130 2258 8.882415 TCGGTACTAAAGGTTCATTATGAATC 57.118 34.615 11.01 10.49 38.79 2.52
2131 2259 9.847224 AATCGGTACTAAAGGTTCATTATGAAT 57.153 29.630 11.01 0.00 38.79 2.57
2132 2260 9.321562 GAATCGGTACTAAAGGTTCATTATGAA 57.678 33.333 3.20 3.20 33.32 2.57
2133 2261 7.650504 CGAATCGGTACTAAAGGTTCATTATGA 59.349 37.037 0.00 0.00 0.00 2.15
2134 2262 7.437267 ACGAATCGGTACTAAAGGTTCATTATG 59.563 37.037 7.80 0.00 0.00 1.90
2135 2263 7.437267 CACGAATCGGTACTAAAGGTTCATTAT 59.563 37.037 7.80 0.00 0.00 1.28
2136 2264 6.753279 CACGAATCGGTACTAAAGGTTCATTA 59.247 38.462 7.80 0.00 0.00 1.90
2137 2265 5.579511 CACGAATCGGTACTAAAGGTTCATT 59.420 40.000 7.80 0.00 0.00 2.57
2138 2266 5.107133 CACGAATCGGTACTAAAGGTTCAT 58.893 41.667 7.80 0.00 0.00 2.57
2139 2267 4.487948 CACGAATCGGTACTAAAGGTTCA 58.512 43.478 7.80 0.00 0.00 3.18
2140 2268 3.305361 GCACGAATCGGTACTAAAGGTTC 59.695 47.826 7.80 0.00 0.00 3.62
2141 2269 3.256558 GCACGAATCGGTACTAAAGGTT 58.743 45.455 7.80 0.00 0.00 3.50
2142 2270 2.417787 GGCACGAATCGGTACTAAAGGT 60.418 50.000 7.80 0.00 0.00 3.50
2143 2271 2.199236 GGCACGAATCGGTACTAAAGG 58.801 52.381 7.80 0.00 0.00 3.11
2144 2272 2.601763 GTGGCACGAATCGGTACTAAAG 59.398 50.000 7.80 0.00 0.00 1.85
2145 2273 2.609350 GTGGCACGAATCGGTACTAAA 58.391 47.619 7.80 0.00 0.00 1.85
2146 2274 1.467883 CGTGGCACGAATCGGTACTAA 60.468 52.381 34.85 0.00 46.05 2.24
2147 2275 0.099259 CGTGGCACGAATCGGTACTA 59.901 55.000 34.85 0.00 46.05 1.82
2148 2276 1.153901 CGTGGCACGAATCGGTACT 60.154 57.895 34.85 0.00 46.05 2.73
2149 2277 3.380671 CGTGGCACGAATCGGTAC 58.619 61.111 34.85 0.00 46.05 3.34
2158 2286 2.198906 TAGTACCGGTTCGTGGCACG 62.199 60.000 32.75 32.75 44.19 5.34
2159 2287 0.038343 TTAGTACCGGTTCGTGGCAC 60.038 55.000 15.04 7.79 0.00 5.01
2160 2288 0.678395 TTTAGTACCGGTTCGTGGCA 59.322 50.000 15.04 0.00 0.00 4.92
2161 2289 1.728425 CTTTTAGTACCGGTTCGTGGC 59.272 52.381 15.04 0.00 0.00 5.01
2162 2290 2.340337 CCTTTTAGTACCGGTTCGTGG 58.660 52.381 15.04 4.56 0.00 4.94
2163 2291 2.289010 ACCCTTTTAGTACCGGTTCGTG 60.289 50.000 15.04 0.00 0.00 4.35
2164 2292 1.970640 ACCCTTTTAGTACCGGTTCGT 59.029 47.619 15.04 0.00 0.00 3.85
2165 2293 2.340337 CACCCTTTTAGTACCGGTTCG 58.660 52.381 15.04 0.00 0.00 3.95
2166 2294 2.038952 ACCACCCTTTTAGTACCGGTTC 59.961 50.000 15.04 8.12 0.00 3.62
2167 2295 2.057140 ACCACCCTTTTAGTACCGGTT 58.943 47.619 15.04 0.00 0.00 4.44
2168 2296 1.348696 CACCACCCTTTTAGTACCGGT 59.651 52.381 13.98 13.98 0.00 5.28
2169 2297 1.339342 CCACCACCCTTTTAGTACCGG 60.339 57.143 0.00 0.00 0.00 5.28
2170 2298 1.947212 GCCACCACCCTTTTAGTACCG 60.947 57.143 0.00 0.00 0.00 4.02
2171 2299 1.074244 TGCCACCACCCTTTTAGTACC 59.926 52.381 0.00 0.00 0.00 3.34
2172 2300 2.433436 CTGCCACCACCCTTTTAGTAC 58.567 52.381 0.00 0.00 0.00 2.73
2173 2301 1.353022 CCTGCCACCACCCTTTTAGTA 59.647 52.381 0.00 0.00 0.00 1.82
2174 2302 0.112412 CCTGCCACCACCCTTTTAGT 59.888 55.000 0.00 0.00 0.00 2.24
2175 2303 1.250840 GCCTGCCACCACCCTTTTAG 61.251 60.000 0.00 0.00 0.00 1.85
2176 2304 1.228737 GCCTGCCACCACCCTTTTA 60.229 57.895 0.00 0.00 0.00 1.52
2177 2305 2.524148 GCCTGCCACCACCCTTTT 60.524 61.111 0.00 0.00 0.00 2.27
2178 2306 3.511610 AGCCTGCCACCACCCTTT 61.512 61.111 0.00 0.00 0.00 3.11
2179 2307 4.290622 CAGCCTGCCACCACCCTT 62.291 66.667 0.00 0.00 0.00 3.95
2209 2337 1.749258 CTAAAAGGGCTCGTGGGGC 60.749 63.158 0.00 0.00 0.00 5.80
2210 2338 0.676782 CACTAAAAGGGCTCGTGGGG 60.677 60.000 0.00 0.00 0.00 4.96
2211 2339 0.323629 TCACTAAAAGGGCTCGTGGG 59.676 55.000 0.00 0.00 0.00 4.61
2212 2340 1.439679 GTCACTAAAAGGGCTCGTGG 58.560 55.000 0.00 0.00 0.00 4.94
2213 2341 1.068474 CGTCACTAAAAGGGCTCGTG 58.932 55.000 0.00 0.00 0.00 4.35
2214 2342 0.037605 CCGTCACTAAAAGGGCTCGT 60.038 55.000 0.00 0.00 0.00 4.18
2215 2343 0.037605 ACCGTCACTAAAAGGGCTCG 60.038 55.000 0.00 0.00 0.00 5.03
2216 2344 2.180432 AACCGTCACTAAAAGGGCTC 57.820 50.000 0.00 0.00 0.00 4.70
2217 2345 2.227194 CAAACCGTCACTAAAAGGGCT 58.773 47.619 0.00 0.00 0.00 5.19
2218 2346 1.951602 ACAAACCGTCACTAAAAGGGC 59.048 47.619 0.00 0.00 0.00 5.19
2219 2347 3.002965 GTCACAAACCGTCACTAAAAGGG 59.997 47.826 0.00 0.00 0.00 3.95
2220 2348 3.302870 CGTCACAAACCGTCACTAAAAGG 60.303 47.826 0.00 0.00 0.00 3.11
2221 2349 3.302870 CCGTCACAAACCGTCACTAAAAG 60.303 47.826 0.00 0.00 0.00 2.27
2222 2350 2.608546 CCGTCACAAACCGTCACTAAAA 59.391 45.455 0.00 0.00 0.00 1.52
2223 2351 2.203401 CCGTCACAAACCGTCACTAAA 58.797 47.619 0.00 0.00 0.00 1.85
2224 2352 1.136695 ACCGTCACAAACCGTCACTAA 59.863 47.619 0.00 0.00 0.00 2.24
2225 2353 0.746063 ACCGTCACAAACCGTCACTA 59.254 50.000 0.00 0.00 0.00 2.74
2226 2354 0.746063 TACCGTCACAAACCGTCACT 59.254 50.000 0.00 0.00 0.00 3.41
2227 2355 1.134226 CTACCGTCACAAACCGTCAC 58.866 55.000 0.00 0.00 0.00 3.67
2228 2356 0.746063 ACTACCGTCACAAACCGTCA 59.254 50.000 0.00 0.00 0.00 4.35
2229 2357 2.704725 TACTACCGTCACAAACCGTC 57.295 50.000 0.00 0.00 0.00 4.79
2230 2358 3.383761 CTTTACTACCGTCACAAACCGT 58.616 45.455 0.00 0.00 0.00 4.83
2231 2359 2.733026 CCTTTACTACCGTCACAAACCG 59.267 50.000 0.00 0.00 0.00 4.44
2232 2360 3.732212 ACCTTTACTACCGTCACAAACC 58.268 45.455 0.00 0.00 0.00 3.27
2233 2361 4.625028 AGACCTTTACTACCGTCACAAAC 58.375 43.478 0.00 0.00 0.00 2.93
2234 2362 4.942761 AGACCTTTACTACCGTCACAAA 57.057 40.909 0.00 0.00 0.00 2.83
2235 2363 5.278957 GGTTAGACCTTTACTACCGTCACAA 60.279 44.000 0.00 0.00 34.73 3.33
2236 2364 4.218417 GGTTAGACCTTTACTACCGTCACA 59.782 45.833 0.00 0.00 34.73 3.58
2237 2365 4.738124 GGTTAGACCTTTACTACCGTCAC 58.262 47.826 0.00 0.00 34.73 3.67
2250 2378 9.124888 CGCAAATCGGTACTATAGGTTAGACCT 62.125 44.444 4.43 4.84 42.64 3.85
2251 2379 6.155136 GCAAATCGGTACTATAGGTTAGACC 58.845 44.000 4.43 2.85 38.99 3.85
2252 2380 5.855395 CGCAAATCGGTACTATAGGTTAGAC 59.145 44.000 4.43 0.00 33.78 2.59
2253 2381 5.532406 ACGCAAATCGGTACTATAGGTTAGA 59.468 40.000 4.43 0.00 43.86 2.10
2254 2382 5.766222 ACGCAAATCGGTACTATAGGTTAG 58.234 41.667 4.43 0.00 43.86 2.34
2255 2383 5.299028 TGACGCAAATCGGTACTATAGGTTA 59.701 40.000 4.43 0.00 43.86 2.85
2256 2384 4.098349 TGACGCAAATCGGTACTATAGGTT 59.902 41.667 4.43 0.00 43.86 3.50
2257 2385 3.633525 TGACGCAAATCGGTACTATAGGT 59.366 43.478 4.43 0.00 43.86 3.08
2258 2386 4.233123 TGACGCAAATCGGTACTATAGG 57.767 45.455 4.43 0.00 43.86 2.57
2259 2387 5.458015 TGATGACGCAAATCGGTACTATAG 58.542 41.667 0.00 0.00 43.86 1.31
2260 2388 5.441709 TGATGACGCAAATCGGTACTATA 57.558 39.130 0.00 0.00 43.86 1.31
2261 2389 4.316205 TGATGACGCAAATCGGTACTAT 57.684 40.909 0.00 0.00 43.86 2.12
2262 2390 3.786516 TGATGACGCAAATCGGTACTA 57.213 42.857 0.00 0.00 43.86 1.82
2263 2391 2.665649 TGATGACGCAAATCGGTACT 57.334 45.000 0.00 0.00 43.86 2.73
2264 2392 2.222953 GGTTGATGACGCAAATCGGTAC 60.223 50.000 0.00 0.00 43.86 3.34
2265 2393 2.004017 GGTTGATGACGCAAATCGGTA 58.996 47.619 0.00 0.00 43.86 4.02
2266 2394 0.802494 GGTTGATGACGCAAATCGGT 59.198 50.000 0.00 0.00 43.86 4.69
2267 2395 0.247655 CGGTTGATGACGCAAATCGG 60.248 55.000 0.00 0.00 43.86 4.18
2268 2396 0.247655 CCGGTTGATGACGCAAATCG 60.248 55.000 0.00 0.00 45.38 3.34
2269 2397 0.523335 GCCGGTTGATGACGCAAATC 60.523 55.000 1.90 0.00 0.00 2.17
2270 2398 1.240641 TGCCGGTTGATGACGCAAAT 61.241 50.000 1.90 0.00 0.00 2.32
2271 2399 1.894282 TGCCGGTTGATGACGCAAA 60.894 52.632 1.90 0.00 0.00 3.68
2272 2400 2.281139 TGCCGGTTGATGACGCAA 60.281 55.556 1.90 0.00 0.00 4.85
2273 2401 2.161078 TAGTGCCGGTTGATGACGCA 62.161 55.000 1.90 0.00 0.00 5.24
2274 2402 1.447140 TAGTGCCGGTTGATGACGC 60.447 57.895 1.90 0.00 0.00 5.19
2275 2403 0.389296 TGTAGTGCCGGTTGATGACG 60.389 55.000 1.90 0.00 0.00 4.35
2276 2404 1.067142 TCTGTAGTGCCGGTTGATGAC 60.067 52.381 1.90 0.00 0.00 3.06
2277 2405 1.204704 CTCTGTAGTGCCGGTTGATGA 59.795 52.381 1.90 0.00 0.00 2.92
2278 2406 1.066858 ACTCTGTAGTGCCGGTTGATG 60.067 52.381 1.90 0.00 33.57 3.07
2279 2407 1.204941 GACTCTGTAGTGCCGGTTGAT 59.795 52.381 1.90 0.00 35.56 2.57
2280 2408 0.601558 GACTCTGTAGTGCCGGTTGA 59.398 55.000 1.90 0.00 35.56 3.18
2281 2409 0.603569 AGACTCTGTAGTGCCGGTTG 59.396 55.000 1.90 0.00 35.56 3.77
2282 2410 1.339097 AAGACTCTGTAGTGCCGGTT 58.661 50.000 1.90 0.00 35.56 4.44
2283 2411 2.211250 TAAGACTCTGTAGTGCCGGT 57.789 50.000 1.90 0.00 35.56 5.28
2284 2412 2.416972 GGTTAAGACTCTGTAGTGCCGG 60.417 54.545 0.00 0.00 35.56 6.13
2285 2413 2.492484 AGGTTAAGACTCTGTAGTGCCG 59.508 50.000 0.00 0.00 35.56 5.69
2286 2414 5.855740 ATAGGTTAAGACTCTGTAGTGCC 57.144 43.478 0.00 0.00 35.56 5.01
2287 2415 7.499895 AGACTATAGGTTAAGACTCTGTAGTGC 59.500 40.741 4.43 0.00 34.44 4.40
2288 2416 8.967664 AGACTATAGGTTAAGACTCTGTAGTG 57.032 38.462 4.43 0.00 34.44 2.74
2289 2417 7.927629 CGAGACTATAGGTTAAGACTCTGTAGT 59.072 40.741 4.43 0.00 35.64 2.73
2290 2418 8.143193 TCGAGACTATAGGTTAAGACTCTGTAG 58.857 40.741 4.43 0.00 33.96 2.74
2291 2419 8.016301 TCGAGACTATAGGTTAAGACTCTGTA 57.984 38.462 4.43 0.00 33.96 2.74
2292 2420 6.887013 TCGAGACTATAGGTTAAGACTCTGT 58.113 40.000 4.43 0.00 33.96 3.41
2293 2421 7.972832 ATCGAGACTATAGGTTAAGACTCTG 57.027 40.000 4.43 0.00 33.96 3.35
2294 2422 8.212312 TCAATCGAGACTATAGGTTAAGACTCT 58.788 37.037 4.43 0.00 33.96 3.24
2295 2423 8.380743 TCAATCGAGACTATAGGTTAAGACTC 57.619 38.462 4.43 0.00 33.15 3.36
2296 2424 8.749026 TTCAATCGAGACTATAGGTTAAGACT 57.251 34.615 4.43 0.00 0.00 3.24
2297 2425 8.838365 TCTTCAATCGAGACTATAGGTTAAGAC 58.162 37.037 4.43 0.00 0.00 3.01
2298 2426 8.838365 GTCTTCAATCGAGACTATAGGTTAAGA 58.162 37.037 4.43 0.00 40.24 2.10
2299 2427 8.622157 TGTCTTCAATCGAGACTATAGGTTAAG 58.378 37.037 4.43 0.00 43.07 1.85
2300 2428 8.404000 GTGTCTTCAATCGAGACTATAGGTTAA 58.596 37.037 4.43 0.00 43.07 2.01
2301 2429 7.555195 TGTGTCTTCAATCGAGACTATAGGTTA 59.445 37.037 4.43 0.00 43.07 2.85
2302 2430 6.377429 TGTGTCTTCAATCGAGACTATAGGTT 59.623 38.462 4.43 0.00 43.07 3.50
2303 2431 5.886474 TGTGTCTTCAATCGAGACTATAGGT 59.114 40.000 4.43 0.00 43.07 3.08
2304 2432 6.378710 TGTGTCTTCAATCGAGACTATAGG 57.621 41.667 4.43 0.00 43.07 2.57
2305 2433 7.221067 GGTTTGTGTCTTCAATCGAGACTATAG 59.779 40.741 0.00 0.00 43.07 1.31
2306 2434 7.033791 GGTTTGTGTCTTCAATCGAGACTATA 58.966 38.462 5.92 0.00 43.07 1.31
2307 2435 5.869888 GGTTTGTGTCTTCAATCGAGACTAT 59.130 40.000 5.92 0.00 43.07 2.12
2308 2436 5.227908 GGTTTGTGTCTTCAATCGAGACTA 58.772 41.667 5.92 0.00 43.07 2.59
2309 2437 4.058817 GGTTTGTGTCTTCAATCGAGACT 58.941 43.478 5.92 0.00 43.07 3.24
2310 2438 3.120991 CGGTTTGTGTCTTCAATCGAGAC 60.121 47.826 0.00 0.00 42.98 3.36
2311 2439 3.057019 CGGTTTGTGTCTTCAATCGAGA 58.943 45.455 0.00 0.00 31.43 4.04
2312 2440 2.157668 CCGGTTTGTGTCTTCAATCGAG 59.842 50.000 0.00 0.00 31.43 4.04
2313 2441 2.139917 CCGGTTTGTGTCTTCAATCGA 58.860 47.619 0.00 0.00 31.43 3.59
2314 2442 1.399727 GCCGGTTTGTGTCTTCAATCG 60.400 52.381 1.90 0.00 0.00 3.34
2315 2443 1.606668 TGCCGGTTTGTGTCTTCAATC 59.393 47.619 1.90 0.00 0.00 2.67
2316 2444 1.336755 GTGCCGGTTTGTGTCTTCAAT 59.663 47.619 1.90 0.00 0.00 2.57
2317 2445 0.736053 GTGCCGGTTTGTGTCTTCAA 59.264 50.000 1.90 0.00 0.00 2.69
2318 2446 0.107410 AGTGCCGGTTTGTGTCTTCA 60.107 50.000 1.90 0.00 0.00 3.02
2319 2447 1.873698 TAGTGCCGGTTTGTGTCTTC 58.126 50.000 1.90 0.00 0.00 2.87
2320 2448 2.561478 ATAGTGCCGGTTTGTGTCTT 57.439 45.000 1.90 0.00 0.00 3.01
2321 2449 2.829720 TCTATAGTGCCGGTTTGTGTCT 59.170 45.455 1.90 0.00 0.00 3.41
2322 2450 3.187700 CTCTATAGTGCCGGTTTGTGTC 58.812 50.000 1.90 0.00 0.00 3.67
2323 2451 2.677037 GCTCTATAGTGCCGGTTTGTGT 60.677 50.000 14.56 0.00 0.00 3.72
2324 2452 1.933853 GCTCTATAGTGCCGGTTTGTG 59.066 52.381 14.56 0.00 0.00 3.33
2325 2453 1.470979 CGCTCTATAGTGCCGGTTTGT 60.471 52.381 18.55 0.00 0.00 2.83
2326 2454 1.209128 CGCTCTATAGTGCCGGTTTG 58.791 55.000 18.55 2.71 0.00 2.93
2327 2455 0.104304 CCGCTCTATAGTGCCGGTTT 59.896 55.000 18.55 0.00 31.50 3.27
2328 2456 1.740285 CCGCTCTATAGTGCCGGTT 59.260 57.895 18.55 0.00 31.50 4.44
2329 2457 2.201022 CCCGCTCTATAGTGCCGGT 61.201 63.158 23.48 0.00 31.51 5.28
2330 2458 2.143594 GACCCGCTCTATAGTGCCGG 62.144 65.000 23.88 23.88 38.34 6.13
2331 2459 1.173444 AGACCCGCTCTATAGTGCCG 61.173 60.000 18.55 13.03 31.50 5.69
2332 2460 1.906990 TAGACCCGCTCTATAGTGCC 58.093 55.000 18.55 6.88 31.50 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.