Multiple sequence alignment - TraesCS5A01G327400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G327400 chr5A 100.000 2201 0 0 1 2201 537108206 537106006 0.000000e+00 4065
1 TraesCS5A01G327400 chr5A 84.247 292 38 8 1491 1778 673681617 673681330 5.980000e-71 278
2 TraesCS5A01G327400 chr6B 91.681 1779 128 11 2 1773 219562383 219564148 0.000000e+00 2447
3 TraesCS5A01G327400 chr6B 91.292 1780 135 11 1 1773 78311026 78309260 0.000000e+00 2410
4 TraesCS5A01G327400 chr6B 81.250 448 62 19 1339 1772 39776771 39777210 2.090000e-90 342
5 TraesCS5A01G327400 chr6B 80.899 445 69 13 1339 1772 39778969 39779408 9.740000e-89 337
6 TraesCS5A01G327400 chr6B 80.899 445 69 13 1339 1772 39783360 39783799 9.740000e-89 337
7 TraesCS5A01G327400 chr6B 80.942 446 67 14 1339 1772 39792152 39792591 9.740000e-89 337
8 TraesCS5A01G327400 chr4B 91.657 1774 139 8 4 1773 134359832 134361600 0.000000e+00 2447
9 TraesCS5A01G327400 chr2A 91.681 1779 128 12 1 1772 759092134 759093899 0.000000e+00 2447
10 TraesCS5A01G327400 chr2A 80.702 456 74 10 1328 1773 444800011 444800462 2.090000e-90 342
11 TraesCS5A01G327400 chr6A 91.634 1781 127 18 1 1773 106682994 106681228 0.000000e+00 2444
12 TraesCS5A01G327400 chr3D 91.456 1779 130 18 4 1774 606922329 606920565 0.000000e+00 2423
13 TraesCS5A01G327400 chr2B 92.312 1717 114 11 1 1712 619942080 619943783 0.000000e+00 2423
14 TraesCS5A01G327400 chr2D 92.021 1717 121 8 1 1713 16242198 16240494 0.000000e+00 2398
15 TraesCS5A01G327400 chr7B 90.771 1777 151 9 1 1772 710155074 710153306 0.000000e+00 2361
16 TraesCS5A01G327400 chr5B 89.623 318 25 3 1837 2146 511311081 511310764 4.400000e-107 398
17 TraesCS5A01G327400 chr7D 82.595 316 47 7 1468 1778 5040006 5039694 2.780000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G327400 chr5A 537106006 537108206 2200 True 4065.000000 4065 100.000 1 2201 1 chr5A.!!$R1 2200
1 TraesCS5A01G327400 chr6B 219562383 219564148 1765 False 2447.000000 2447 91.681 2 1773 1 chr6B.!!$F2 1771
2 TraesCS5A01G327400 chr6B 78309260 78311026 1766 True 2410.000000 2410 91.292 1 1773 1 chr6B.!!$R1 1772
3 TraesCS5A01G327400 chr6B 39776771 39783799 7028 False 338.666667 342 81.016 1339 1772 3 chr6B.!!$F3 433
4 TraesCS5A01G327400 chr4B 134359832 134361600 1768 False 2447.000000 2447 91.657 4 1773 1 chr4B.!!$F1 1769
5 TraesCS5A01G327400 chr2A 759092134 759093899 1765 False 2447.000000 2447 91.681 1 1772 1 chr2A.!!$F2 1771
6 TraesCS5A01G327400 chr6A 106681228 106682994 1766 True 2444.000000 2444 91.634 1 1773 1 chr6A.!!$R1 1772
7 TraesCS5A01G327400 chr3D 606920565 606922329 1764 True 2423.000000 2423 91.456 4 1774 1 chr3D.!!$R1 1770
8 TraesCS5A01G327400 chr2B 619942080 619943783 1703 False 2423.000000 2423 92.312 1 1712 1 chr2B.!!$F1 1711
9 TraesCS5A01G327400 chr2D 16240494 16242198 1704 True 2398.000000 2398 92.021 1 1713 1 chr2D.!!$R1 1712
10 TraesCS5A01G327400 chr7B 710153306 710155074 1768 True 2361.000000 2361 90.771 1 1772 1 chr7B.!!$R1 1771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 850 0.741915 GACAGGCGGTCAACCAAAAA 59.258 50.0 13.03 0.0 46.19 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 8693 0.104855 GGCTCACCGCATCTATGTGA 59.895 55.0 5.09 0.0 40.61 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 185 0.984961 AGCCAGCTAAGATGGAGGCA 60.985 55.000 6.13 0.00 44.34 4.75
190 192 2.865670 GCTAAGATGGAGGCAGATGACG 60.866 54.545 0.00 0.00 0.00 4.35
259 261 7.990886 GTCTGTTGGACCAGGTTATTTATCATA 59.009 37.037 0.00 0.00 38.93 2.15
267 269 9.167311 GACCAGGTTATTTATCATATGATGGAC 57.833 37.037 25.44 13.74 36.05 4.02
294 296 1.404391 TCGCCGAACAAGATCTAGGAC 59.596 52.381 0.00 0.00 0.00 3.85
300 302 5.623824 GCCGAACAAGATCTAGGACAAACTA 60.624 44.000 0.00 0.00 0.00 2.24
330 332 3.064207 GTTTATGTCCAAGACTGCGACA 58.936 45.455 7.19 7.19 37.25 4.35
368 370 5.538053 TGAAGCAAAAGTTGTATGGGATGAA 59.462 36.000 0.00 0.00 0.00 2.57
452 454 3.595758 ACGCTTGGGTGCAACAGC 61.596 61.111 3.06 3.62 39.98 4.40
475 477 2.295349 GACGACGAGGATAGGGCAATTA 59.705 50.000 0.00 0.00 0.00 1.40
497 499 3.655486 TGCTTCTTTGTTCATTGCCATG 58.345 40.909 0.00 0.00 0.00 3.66
636 638 7.010923 GTCTCTCATAATGAAGGTTTGCTAGTG 59.989 40.741 0.00 0.00 0.00 2.74
672 674 1.734655 GGAAGGGATATGAGGCTGGA 58.265 55.000 0.00 0.00 0.00 3.86
788 790 8.061294 GCAAGTGCTAATAAGGCAACTCATGA 62.061 42.308 0.00 0.00 42.57 3.07
799 801 4.135306 GGCAACTCATGATGATGACTCAT 58.865 43.478 0.00 0.00 44.93 2.90
848 850 0.741915 GACAGGCGGTCAACCAAAAA 59.258 50.000 13.03 0.00 46.19 1.94
898 900 1.608590 CTTTTCATGCGACACCCAACT 59.391 47.619 0.00 0.00 0.00 3.16
923 925 4.501058 GGAGTGGTTCTCTTCGTACAAGTT 60.501 45.833 0.00 0.00 42.40 2.66
950 952 6.354130 GTGAGTTTGGTTTAGCCTATATGGA 58.646 40.000 0.00 0.00 38.35 3.41
1161 1164 3.767131 TGAAAGATGAGGTGACCGTGATA 59.233 43.478 0.00 0.00 0.00 2.15
1166 1169 4.405680 AGATGAGGTGACCGTGATAATTGA 59.594 41.667 0.00 0.00 0.00 2.57
1198 1201 3.058224 GGCTTCGCATCTTTACAAGTTGT 60.058 43.478 14.05 14.05 32.17 3.32
1246 1249 1.270305 CGGAGACTGAAGTTGCAGGAA 60.270 52.381 0.00 0.00 40.20 3.36
1256 1259 0.744414 GTTGCAGGAATAGCAGCGGA 60.744 55.000 0.00 0.00 43.75 5.54
1263 1266 1.342819 GGAATAGCAGCGGAGTCTCAT 59.657 52.381 1.47 0.00 0.00 2.90
1298 1301 1.310933 GGGGCAGACTCGTCGAGTAA 61.311 60.000 27.03 0.00 43.53 2.24
1313 1316 5.234757 CGTCGAGTAACTCTCAGTAAGCTAT 59.765 44.000 0.00 0.00 42.88 2.97
1320 1323 9.196139 AGTAACTCTCAGTAAGCTATGAAGAAT 57.804 33.333 0.00 0.00 0.00 2.40
1347 1350 2.635915 ACAAGTCCGGAGTACATGGAAA 59.364 45.455 13.41 0.00 32.60 3.13
1354 1357 4.006989 CCGGAGTACATGGAAATTTGACA 58.993 43.478 0.00 0.00 0.00 3.58
1359 1362 6.150976 GGAGTACATGGAAATTTGACACATGA 59.849 38.462 19.91 8.18 40.92 3.07
1387 7979 8.624776 CAAATTCAAGGTGGTAGAGAATATTCC 58.375 37.037 11.92 4.07 0.00 3.01
1388 7980 7.698163 ATTCAAGGTGGTAGAGAATATTCCT 57.302 36.000 11.92 10.91 0.00 3.36
1410 8002 3.442273 TCAAGGTGGAGTTTGTTGTGTTC 59.558 43.478 0.00 0.00 0.00 3.18
1411 8003 3.366052 AGGTGGAGTTTGTTGTGTTCT 57.634 42.857 0.00 0.00 0.00 3.01
1414 8006 3.442273 GGTGGAGTTTGTTGTGTTCTTGA 59.558 43.478 0.00 0.00 0.00 3.02
1489 8088 3.965694 AGGATAGTGTAGTGTCGGAGTT 58.034 45.455 0.00 0.00 0.00 3.01
1503 8102 1.536496 CGGAGTTGGACACGTTGTACA 60.536 52.381 0.00 0.00 39.95 2.90
1504 8103 2.762745 GGAGTTGGACACGTTGTACAT 58.237 47.619 0.00 0.00 41.55 2.29
1566 8169 5.163205 ACCTATGCCAACATAATAGCACAGA 60.163 40.000 0.00 0.00 38.29 3.41
1575 8178 2.455674 AATAGCACAGACACGCAAGA 57.544 45.000 0.00 0.00 43.62 3.02
1581 8184 1.115930 ACAGACACGCAAGAGGGAGT 61.116 55.000 0.00 0.00 43.62 3.85
1587 8190 3.760035 GCAAGAGGGAGTCGGCGA 61.760 66.667 4.99 4.99 0.00 5.54
1683 8297 3.399330 CCGGAAAATGTAGCCATATCGT 58.601 45.455 0.00 0.00 0.00 3.73
1692 8306 3.449377 TGTAGCCATATCGTTGAACCTCA 59.551 43.478 0.00 0.00 0.00 3.86
1704 8318 7.504924 TCGTTGAACCTCATTAACAAATCTT 57.495 32.000 0.00 0.00 0.00 2.40
1728 8344 1.912110 GTCGTACTCGTGTGATTGCTC 59.088 52.381 0.00 0.00 38.33 4.26
1733 8349 0.388520 CTCGTGTGATTGCTCGGTCA 60.389 55.000 0.00 0.00 0.00 4.02
1774 8392 7.553334 AGTGCCTCGATTTTATTCTAACAGTA 58.447 34.615 0.00 0.00 0.00 2.74
1775 8393 7.707035 AGTGCCTCGATTTTATTCTAACAGTAG 59.293 37.037 0.00 0.00 0.00 2.57
1776 8394 6.984474 TGCCTCGATTTTATTCTAACAGTAGG 59.016 38.462 0.00 0.00 0.00 3.18
1777 8395 6.985059 GCCTCGATTTTATTCTAACAGTAGGT 59.015 38.462 0.00 0.00 0.00 3.08
1778 8396 7.494952 GCCTCGATTTTATTCTAACAGTAGGTT 59.505 37.037 0.00 0.00 43.62 3.50
1779 8397 9.032420 CCTCGATTTTATTCTAACAGTAGGTTC 57.968 37.037 0.00 0.00 40.96 3.62
1780 8398 8.624701 TCGATTTTATTCTAACAGTAGGTTCG 57.375 34.615 0.00 0.00 40.96 3.95
1781 8399 8.246180 TCGATTTTATTCTAACAGTAGGTTCGT 58.754 33.333 0.00 0.00 40.96 3.85
1782 8400 9.507280 CGATTTTATTCTAACAGTAGGTTCGTA 57.493 33.333 0.00 0.00 40.96 3.43
1788 8406 7.686438 TTCTAACAGTAGGTTCGTACATACA 57.314 36.000 17.30 0.00 42.46 2.29
1789 8407 7.870509 TCTAACAGTAGGTTCGTACATACAT 57.129 36.000 17.30 7.28 42.46 2.29
1790 8408 7.700505 TCTAACAGTAGGTTCGTACATACATG 58.299 38.462 17.30 14.08 42.46 3.21
1791 8409 5.258456 ACAGTAGGTTCGTACATACATGG 57.742 43.478 17.30 9.73 42.46 3.66
1792 8410 4.951715 ACAGTAGGTTCGTACATACATGGA 59.048 41.667 17.30 0.00 42.46 3.41
1793 8411 5.597182 ACAGTAGGTTCGTACATACATGGAT 59.403 40.000 17.30 0.00 42.46 3.41
1794 8412 6.150318 CAGTAGGTTCGTACATACATGGATC 58.850 44.000 17.30 0.00 42.46 3.36
1795 8413 5.831525 AGTAGGTTCGTACATACATGGATCA 59.168 40.000 17.30 0.00 42.46 2.92
1796 8414 4.945246 AGGTTCGTACATACATGGATCAC 58.055 43.478 0.00 0.00 0.00 3.06
1797 8415 4.649674 AGGTTCGTACATACATGGATCACT 59.350 41.667 0.00 0.00 0.00 3.41
1798 8416 5.831525 AGGTTCGTACATACATGGATCACTA 59.168 40.000 0.00 0.00 0.00 2.74
1799 8417 6.016192 AGGTTCGTACATACATGGATCACTAG 60.016 42.308 0.00 0.00 0.00 2.57
1800 8418 6.016527 GGTTCGTACATACATGGATCACTAGA 60.017 42.308 0.00 0.00 0.00 2.43
1801 8419 7.309255 GGTTCGTACATACATGGATCACTAGAT 60.309 40.741 0.00 0.00 37.13 1.98
1802 8420 8.727910 GTTCGTACATACATGGATCACTAGATA 58.272 37.037 0.00 0.00 33.72 1.98
1803 8421 9.462606 TTCGTACATACATGGATCACTAGATAT 57.537 33.333 0.00 0.00 33.72 1.63
1831 8449 7.750229 TTCATTCCTCTTTCCATATGTATGC 57.250 36.000 1.24 0.00 32.40 3.14
1832 8450 6.840527 TCATTCCTCTTTCCATATGTATGCA 58.159 36.000 1.24 0.00 32.40 3.96
1833 8451 7.464273 TCATTCCTCTTTCCATATGTATGCAT 58.536 34.615 3.79 3.79 39.03 3.96
1834 8452 7.609146 TCATTCCTCTTTCCATATGTATGCATC 59.391 37.037 0.19 0.00 36.58 3.91
1835 8453 5.809001 TCCTCTTTCCATATGTATGCATCC 58.191 41.667 0.19 0.00 36.58 3.51
1836 8454 5.310331 TCCTCTTTCCATATGTATGCATCCA 59.690 40.000 0.19 0.00 36.58 3.41
1837 8455 5.413833 CCTCTTTCCATATGTATGCATCCAC 59.586 44.000 0.19 0.00 36.58 4.02
1838 8456 5.316167 TCTTTCCATATGTATGCATCCACC 58.684 41.667 0.19 0.00 36.58 4.61
1839 8457 4.999469 TTCCATATGTATGCATCCACCT 57.001 40.909 0.19 0.00 36.58 4.00
1840 8458 6.272090 TCTTTCCATATGTATGCATCCACCTA 59.728 38.462 0.19 0.00 36.58 3.08
1841 8459 5.682234 TCCATATGTATGCATCCACCTAG 57.318 43.478 0.19 0.00 36.58 3.02
1842 8460 5.093677 TCCATATGTATGCATCCACCTAGT 58.906 41.667 0.19 0.00 36.58 2.57
1843 8461 5.046376 TCCATATGTATGCATCCACCTAGTG 60.046 44.000 0.19 0.00 36.58 2.74
1844 8462 5.280164 CCATATGTATGCATCCACCTAGTGT 60.280 44.000 0.19 0.00 36.58 3.55
1845 8463 3.819564 TGTATGCATCCACCTAGTGTC 57.180 47.619 0.19 0.00 0.00 3.67
1846 8464 2.434336 TGTATGCATCCACCTAGTGTCC 59.566 50.000 0.19 0.00 0.00 4.02
1847 8465 1.583556 ATGCATCCACCTAGTGTCCA 58.416 50.000 0.00 0.00 0.00 4.02
1848 8466 1.357137 TGCATCCACCTAGTGTCCAA 58.643 50.000 0.00 0.00 0.00 3.53
1849 8467 1.915489 TGCATCCACCTAGTGTCCAAT 59.085 47.619 0.00 0.00 0.00 3.16
1850 8468 2.092968 TGCATCCACCTAGTGTCCAATC 60.093 50.000 0.00 0.00 0.00 2.67
1851 8469 2.092968 GCATCCACCTAGTGTCCAATCA 60.093 50.000 0.00 0.00 0.00 2.57
1852 8470 3.801698 CATCCACCTAGTGTCCAATCAG 58.198 50.000 0.00 0.00 0.00 2.90
1853 8471 1.555075 TCCACCTAGTGTCCAATCAGC 59.445 52.381 0.00 0.00 0.00 4.26
1854 8472 1.556911 CCACCTAGTGTCCAATCAGCT 59.443 52.381 0.00 0.00 0.00 4.24
1855 8473 2.026822 CCACCTAGTGTCCAATCAGCTT 60.027 50.000 0.00 0.00 0.00 3.74
1856 8474 3.265791 CACCTAGTGTCCAATCAGCTTC 58.734 50.000 0.00 0.00 0.00 3.86
1857 8475 3.055530 CACCTAGTGTCCAATCAGCTTCT 60.056 47.826 0.00 0.00 0.00 2.85
1858 8476 4.160439 CACCTAGTGTCCAATCAGCTTCTA 59.840 45.833 0.00 0.00 0.00 2.10
1859 8477 4.404073 ACCTAGTGTCCAATCAGCTTCTAG 59.596 45.833 0.00 0.00 0.00 2.43
1860 8478 3.258971 AGTGTCCAATCAGCTTCTAGC 57.741 47.619 0.00 0.00 42.84 3.42
1876 8494 7.371126 GCTTCTAGCTAATTTTCAGTTCAGT 57.629 36.000 0.00 0.00 38.45 3.41
1877 8495 8.480643 GCTTCTAGCTAATTTTCAGTTCAGTA 57.519 34.615 0.00 0.00 38.45 2.74
1878 8496 9.103861 GCTTCTAGCTAATTTTCAGTTCAGTAT 57.896 33.333 0.00 0.00 38.45 2.12
1881 8499 9.809096 TCTAGCTAATTTTCAGTTCAGTATCAG 57.191 33.333 0.00 0.00 0.00 2.90
1882 8500 9.593134 CTAGCTAATTTTCAGTTCAGTATCAGT 57.407 33.333 0.00 0.00 0.00 3.41
1883 8501 8.485976 AGCTAATTTTCAGTTCAGTATCAGTC 57.514 34.615 0.00 0.00 0.00 3.51
1884 8502 8.097038 AGCTAATTTTCAGTTCAGTATCAGTCA 58.903 33.333 0.00 0.00 0.00 3.41
1885 8503 8.171840 GCTAATTTTCAGTTCAGTATCAGTCAC 58.828 37.037 0.00 0.00 0.00 3.67
1886 8504 9.208022 CTAATTTTCAGTTCAGTATCAGTCACA 57.792 33.333 0.00 0.00 0.00 3.58
1887 8505 8.627208 AATTTTCAGTTCAGTATCAGTCACAT 57.373 30.769 0.00 0.00 0.00 3.21
1888 8506 8.627208 ATTTTCAGTTCAGTATCAGTCACATT 57.373 30.769 0.00 0.00 0.00 2.71
1889 8507 8.450578 TTTTCAGTTCAGTATCAGTCACATTT 57.549 30.769 0.00 0.00 0.00 2.32
1890 8508 8.450578 TTTCAGTTCAGTATCAGTCACATTTT 57.549 30.769 0.00 0.00 0.00 1.82
1891 8509 7.658179 TCAGTTCAGTATCAGTCACATTTTC 57.342 36.000 0.00 0.00 0.00 2.29
1892 8510 7.216494 TCAGTTCAGTATCAGTCACATTTTCA 58.784 34.615 0.00 0.00 0.00 2.69
1893 8511 7.879677 TCAGTTCAGTATCAGTCACATTTTCAT 59.120 33.333 0.00 0.00 0.00 2.57
1894 8512 8.173775 CAGTTCAGTATCAGTCACATTTTCATC 58.826 37.037 0.00 0.00 0.00 2.92
1895 8513 7.335422 AGTTCAGTATCAGTCACATTTTCATCC 59.665 37.037 0.00 0.00 0.00 3.51
1896 8514 6.950842 TCAGTATCAGTCACATTTTCATCCT 58.049 36.000 0.00 0.00 0.00 3.24
1897 8515 7.397221 TCAGTATCAGTCACATTTTCATCCTT 58.603 34.615 0.00 0.00 0.00 3.36
1898 8516 7.550551 TCAGTATCAGTCACATTTTCATCCTTC 59.449 37.037 0.00 0.00 0.00 3.46
1899 8517 7.335171 CAGTATCAGTCACATTTTCATCCTTCA 59.665 37.037 0.00 0.00 0.00 3.02
1900 8518 6.754702 ATCAGTCACATTTTCATCCTTCAG 57.245 37.500 0.00 0.00 0.00 3.02
1901 8519 4.456911 TCAGTCACATTTTCATCCTTCAGC 59.543 41.667 0.00 0.00 0.00 4.26
1902 8520 4.216902 CAGTCACATTTTCATCCTTCAGCA 59.783 41.667 0.00 0.00 0.00 4.41
1903 8521 5.014858 AGTCACATTTTCATCCTTCAGCAT 58.985 37.500 0.00 0.00 0.00 3.79
1904 8522 5.479375 AGTCACATTTTCATCCTTCAGCATT 59.521 36.000 0.00 0.00 0.00 3.56
1905 8523 5.575606 GTCACATTTTCATCCTTCAGCATTG 59.424 40.000 0.00 0.00 0.00 2.82
1906 8524 5.244402 TCACATTTTCATCCTTCAGCATTGT 59.756 36.000 0.00 0.00 0.00 2.71
1907 8525 5.347635 CACATTTTCATCCTTCAGCATTGTG 59.652 40.000 0.00 0.00 0.00 3.33
1908 8526 5.011329 ACATTTTCATCCTTCAGCATTGTGT 59.989 36.000 0.00 0.00 0.00 3.72
1909 8527 6.209192 ACATTTTCATCCTTCAGCATTGTGTA 59.791 34.615 0.00 0.00 0.00 2.90
1910 8528 6.647334 TTTTCATCCTTCAGCATTGTGTAA 57.353 33.333 0.00 0.00 0.00 2.41
1911 8529 5.885230 TTCATCCTTCAGCATTGTGTAAG 57.115 39.130 0.00 0.00 0.00 2.34
1912 8530 5.164620 TCATCCTTCAGCATTGTGTAAGA 57.835 39.130 0.00 0.00 0.00 2.10
1913 8531 4.937620 TCATCCTTCAGCATTGTGTAAGAC 59.062 41.667 0.00 0.00 0.00 3.01
1914 8532 3.674997 TCCTTCAGCATTGTGTAAGACC 58.325 45.455 0.00 0.00 0.00 3.85
1915 8533 3.072330 TCCTTCAGCATTGTGTAAGACCA 59.928 43.478 0.00 0.00 0.00 4.02
1916 8534 3.438087 CCTTCAGCATTGTGTAAGACCAG 59.562 47.826 0.00 0.00 0.00 4.00
1917 8535 4.318332 CTTCAGCATTGTGTAAGACCAGA 58.682 43.478 0.00 0.00 0.00 3.86
1918 8536 3.664107 TCAGCATTGTGTAAGACCAGAC 58.336 45.455 0.00 0.00 0.00 3.51
1919 8537 3.070878 TCAGCATTGTGTAAGACCAGACA 59.929 43.478 0.00 0.00 0.00 3.41
1920 8538 3.814842 CAGCATTGTGTAAGACCAGACAA 59.185 43.478 0.00 0.00 36.29 3.18
1921 8539 3.815401 AGCATTGTGTAAGACCAGACAAC 59.185 43.478 0.00 0.00 34.87 3.32
1922 8540 3.563808 GCATTGTGTAAGACCAGACAACA 59.436 43.478 0.00 0.00 34.87 3.33
1923 8541 4.036262 GCATTGTGTAAGACCAGACAACAA 59.964 41.667 0.00 0.00 34.87 2.83
1924 8542 5.510671 CATTGTGTAAGACCAGACAACAAC 58.489 41.667 0.00 0.00 34.87 3.32
1925 8543 3.191669 TGTGTAAGACCAGACAACAACG 58.808 45.455 0.00 0.00 0.00 4.10
1926 8544 2.033151 GTGTAAGACCAGACAACAACGC 60.033 50.000 0.00 0.00 0.00 4.84
1927 8545 2.206750 GTAAGACCAGACAACAACGCA 58.793 47.619 0.00 0.00 0.00 5.24
1928 8546 1.745232 AAGACCAGACAACAACGCAA 58.255 45.000 0.00 0.00 0.00 4.85
1929 8547 1.745232 AGACCAGACAACAACGCAAA 58.255 45.000 0.00 0.00 0.00 3.68
1930 8548 2.088423 AGACCAGACAACAACGCAAAA 58.912 42.857 0.00 0.00 0.00 2.44
1931 8549 2.490115 AGACCAGACAACAACGCAAAAA 59.510 40.909 0.00 0.00 0.00 1.94
1932 8550 3.130340 AGACCAGACAACAACGCAAAAAT 59.870 39.130 0.00 0.00 0.00 1.82
1933 8551 3.443976 ACCAGACAACAACGCAAAAATC 58.556 40.909 0.00 0.00 0.00 2.17
1934 8552 3.119316 ACCAGACAACAACGCAAAAATCA 60.119 39.130 0.00 0.00 0.00 2.57
1935 8553 3.242712 CCAGACAACAACGCAAAAATCAC 59.757 43.478 0.00 0.00 0.00 3.06
1936 8554 4.104776 CAGACAACAACGCAAAAATCACT 58.895 39.130 0.00 0.00 0.00 3.41
1937 8555 4.027458 CAGACAACAACGCAAAAATCACTG 60.027 41.667 0.00 0.00 0.00 3.66
1938 8556 2.602660 ACAACAACGCAAAAATCACTGC 59.397 40.909 0.00 0.00 35.14 4.40
1939 8557 2.859538 CAACAACGCAAAAATCACTGCT 59.140 40.909 0.00 0.00 36.38 4.24
1940 8558 3.163630 ACAACGCAAAAATCACTGCTT 57.836 38.095 0.00 0.00 36.38 3.91
1941 8559 2.859538 ACAACGCAAAAATCACTGCTTG 59.140 40.909 0.00 0.00 36.38 4.01
1942 8560 3.114809 CAACGCAAAAATCACTGCTTGA 58.885 40.909 0.00 0.00 39.11 3.02
1943 8561 3.004024 ACGCAAAAATCACTGCTTGAG 57.996 42.857 0.00 0.00 37.77 3.02
1944 8562 1.717645 CGCAAAAATCACTGCTTGAGC 59.282 47.619 0.00 0.00 37.77 4.26
1945 8563 1.717645 GCAAAAATCACTGCTTGAGCG 59.282 47.619 0.00 0.00 45.83 5.03
1952 8570 4.063529 CTGCTTGAGCGGGTCAAA 57.936 55.556 21.46 8.77 44.83 2.69
1953 8571 1.576421 CTGCTTGAGCGGGTCAAAC 59.424 57.895 21.46 17.93 44.83 2.93
1954 8572 1.153066 TGCTTGAGCGGGTCAAACA 60.153 52.632 21.46 20.10 44.83 2.83
1955 8573 1.165907 TGCTTGAGCGGGTCAAACAG 61.166 55.000 21.46 12.45 44.83 3.16
1956 8574 0.884704 GCTTGAGCGGGTCAAACAGA 60.885 55.000 21.46 1.54 44.83 3.41
1957 8575 0.868406 CTTGAGCGGGTCAAACAGAC 59.132 55.000 21.46 0.00 44.83 3.51
1985 8603 8.870160 AAAAATTGAATGATGTCGAACTGAAA 57.130 26.923 0.00 0.00 0.00 2.69
1986 8604 8.870160 AAAATTGAATGATGTCGAACTGAAAA 57.130 26.923 0.00 0.00 0.00 2.29
1987 8605 9.480053 AAAATTGAATGATGTCGAACTGAAAAT 57.520 25.926 0.00 0.00 0.00 1.82
1988 8606 8.456904 AATTGAATGATGTCGAACTGAAAATG 57.543 30.769 0.00 0.00 0.00 2.32
1989 8607 6.799926 TGAATGATGTCGAACTGAAAATGA 57.200 33.333 0.00 0.00 0.00 2.57
1990 8608 6.834876 TGAATGATGTCGAACTGAAAATGAG 58.165 36.000 0.00 0.00 0.00 2.90
1991 8609 6.427853 TGAATGATGTCGAACTGAAAATGAGT 59.572 34.615 0.00 0.00 0.00 3.41
1992 8610 5.596268 TGATGTCGAACTGAAAATGAGTG 57.404 39.130 0.00 0.00 0.00 3.51
1993 8611 5.056480 TGATGTCGAACTGAAAATGAGTGT 58.944 37.500 0.00 0.00 0.00 3.55
1994 8612 6.220201 TGATGTCGAACTGAAAATGAGTGTA 58.780 36.000 0.00 0.00 0.00 2.90
1995 8613 6.704050 TGATGTCGAACTGAAAATGAGTGTAA 59.296 34.615 0.00 0.00 0.00 2.41
1996 8614 7.387673 TGATGTCGAACTGAAAATGAGTGTAAT 59.612 33.333 0.00 0.00 0.00 1.89
1997 8615 7.490962 TGTCGAACTGAAAATGAGTGTAATT 57.509 32.000 0.00 0.00 0.00 1.40
1998 8616 7.572759 TGTCGAACTGAAAATGAGTGTAATTC 58.427 34.615 0.00 0.00 0.00 2.17
1999 8617 7.441157 TGTCGAACTGAAAATGAGTGTAATTCT 59.559 33.333 0.00 0.00 0.00 2.40
2000 8618 8.283291 GTCGAACTGAAAATGAGTGTAATTCTT 58.717 33.333 0.00 0.00 0.00 2.52
2001 8619 8.836413 TCGAACTGAAAATGAGTGTAATTCTTT 58.164 29.630 0.00 0.00 0.00 2.52
2002 8620 9.107367 CGAACTGAAAATGAGTGTAATTCTTTC 57.893 33.333 0.00 0.00 0.00 2.62
2003 8621 9.107367 GAACTGAAAATGAGTGTAATTCTTTCG 57.893 33.333 0.00 0.00 0.00 3.46
2004 8622 8.154649 ACTGAAAATGAGTGTAATTCTTTCGT 57.845 30.769 0.00 0.00 0.00 3.85
2005 8623 8.621286 ACTGAAAATGAGTGTAATTCTTTCGTT 58.379 29.630 0.00 0.00 0.00 3.85
2006 8624 9.107367 CTGAAAATGAGTGTAATTCTTTCGTTC 57.893 33.333 0.00 0.00 0.00 3.95
2007 8625 8.073768 TGAAAATGAGTGTAATTCTTTCGTTCC 58.926 33.333 0.00 0.00 0.00 3.62
2008 8626 7.504924 AAATGAGTGTAATTCTTTCGTTCCA 57.495 32.000 0.00 0.00 0.00 3.53
2009 8627 7.504924 AATGAGTGTAATTCTTTCGTTCCAA 57.495 32.000 0.00 0.00 0.00 3.53
2010 8628 7.687941 ATGAGTGTAATTCTTTCGTTCCAAT 57.312 32.000 0.00 0.00 0.00 3.16
2011 8629 6.898041 TGAGTGTAATTCTTTCGTTCCAATG 58.102 36.000 0.00 0.00 0.00 2.82
2012 8630 6.708502 TGAGTGTAATTCTTTCGTTCCAATGA 59.291 34.615 0.00 0.00 0.00 2.57
2013 8631 6.899114 AGTGTAATTCTTTCGTTCCAATGAC 58.101 36.000 0.00 0.00 0.00 3.06
2014 8632 6.485313 AGTGTAATTCTTTCGTTCCAATGACA 59.515 34.615 0.00 0.00 0.00 3.58
2015 8633 6.797033 GTGTAATTCTTTCGTTCCAATGACAG 59.203 38.462 0.00 0.00 0.00 3.51
2016 8634 6.708502 TGTAATTCTTTCGTTCCAATGACAGA 59.291 34.615 0.00 0.00 30.99 3.41
2017 8635 6.824305 AATTCTTTCGTTCCAATGACAGAT 57.176 33.333 0.00 0.00 32.53 2.90
2018 8636 5.611796 TTCTTTCGTTCCAATGACAGATG 57.388 39.130 0.00 0.00 32.53 2.90
2019 8637 4.002982 TCTTTCGTTCCAATGACAGATGG 58.997 43.478 4.08 4.08 38.09 3.51
2020 8638 1.737838 TCGTTCCAATGACAGATGGC 58.262 50.000 5.39 0.00 36.62 4.40
2021 8639 0.374758 CGTTCCAATGACAGATGGCG 59.625 55.000 5.39 1.74 36.62 5.69
2022 8640 1.453155 GTTCCAATGACAGATGGCGT 58.547 50.000 5.39 0.00 36.62 5.68
2023 8641 1.812571 GTTCCAATGACAGATGGCGTT 59.187 47.619 5.39 0.00 36.62 4.84
2024 8642 1.452110 TCCAATGACAGATGGCGTTG 58.548 50.000 12.79 12.79 46.88 4.10
2025 8643 0.179156 CCAATGACAGATGGCGTTGC 60.179 55.000 14.07 0.00 46.18 4.17
2026 8644 3.470393 CCAATGACAGATGGCGTTGCC 62.470 57.143 14.07 0.00 46.18 4.52
2044 8662 1.986882 CCCCTATGGCCAAGATGAAC 58.013 55.000 10.96 0.00 0.00 3.18
2045 8663 1.215173 CCCCTATGGCCAAGATGAACA 59.785 52.381 10.96 0.00 0.00 3.18
2046 8664 2.358090 CCCCTATGGCCAAGATGAACAA 60.358 50.000 10.96 0.00 0.00 2.83
2047 8665 2.954318 CCCTATGGCCAAGATGAACAAG 59.046 50.000 10.96 0.00 0.00 3.16
2048 8666 2.360165 CCTATGGCCAAGATGAACAAGC 59.640 50.000 10.96 0.00 0.00 4.01
2049 8667 2.226962 ATGGCCAAGATGAACAAGCT 57.773 45.000 10.96 0.00 0.00 3.74
2050 8668 1.250328 TGGCCAAGATGAACAAGCTG 58.750 50.000 0.61 0.00 0.00 4.24
2051 8669 1.202915 TGGCCAAGATGAACAAGCTGA 60.203 47.619 0.61 0.00 0.00 4.26
2052 8670 1.471684 GGCCAAGATGAACAAGCTGAG 59.528 52.381 0.00 0.00 0.00 3.35
2053 8671 1.471684 GCCAAGATGAACAAGCTGAGG 59.528 52.381 0.00 0.00 0.00 3.86
2054 8672 2.089980 CCAAGATGAACAAGCTGAGGG 58.910 52.381 0.00 0.00 0.00 4.30
2055 8673 2.553904 CCAAGATGAACAAGCTGAGGGT 60.554 50.000 0.00 0.00 0.00 4.34
2056 8674 3.307691 CCAAGATGAACAAGCTGAGGGTA 60.308 47.826 0.00 0.00 0.00 3.69
2057 8675 3.618690 AGATGAACAAGCTGAGGGTAC 57.381 47.619 0.00 0.00 0.00 3.34
2058 8676 3.177228 AGATGAACAAGCTGAGGGTACT 58.823 45.455 0.00 0.00 0.00 2.73
2059 8677 3.584848 AGATGAACAAGCTGAGGGTACTT 59.415 43.478 0.00 0.00 0.00 2.24
2060 8678 3.402628 TGAACAAGCTGAGGGTACTTC 57.597 47.619 0.00 0.00 0.00 3.01
2061 8679 2.703536 TGAACAAGCTGAGGGTACTTCA 59.296 45.455 0.00 0.00 0.00 3.02
2062 8680 3.135712 TGAACAAGCTGAGGGTACTTCAA 59.864 43.478 0.00 0.00 0.00 2.69
2063 8681 3.857157 ACAAGCTGAGGGTACTTCAAA 57.143 42.857 0.00 0.00 0.00 2.69
2064 8682 4.373156 ACAAGCTGAGGGTACTTCAAAT 57.627 40.909 0.00 0.00 0.00 2.32
2065 8683 5.499004 ACAAGCTGAGGGTACTTCAAATA 57.501 39.130 0.00 0.00 0.00 1.40
2066 8684 6.067217 ACAAGCTGAGGGTACTTCAAATAT 57.933 37.500 0.00 0.00 0.00 1.28
2067 8685 5.882557 ACAAGCTGAGGGTACTTCAAATATG 59.117 40.000 0.00 0.00 0.00 1.78
2068 8686 4.455606 AGCTGAGGGTACTTCAAATATGC 58.544 43.478 0.00 0.00 0.00 3.14
2069 8687 3.565902 GCTGAGGGTACTTCAAATATGCC 59.434 47.826 0.00 0.00 0.00 4.40
2070 8688 4.780815 CTGAGGGTACTTCAAATATGCCA 58.219 43.478 0.00 0.00 0.00 4.92
2071 8689 5.186256 TGAGGGTACTTCAAATATGCCAA 57.814 39.130 0.00 0.00 0.00 4.52
2072 8690 5.192927 TGAGGGTACTTCAAATATGCCAAG 58.807 41.667 0.00 0.00 0.00 3.61
2073 8691 3.954258 AGGGTACTTCAAATATGCCAAGC 59.046 43.478 0.00 0.00 0.00 4.01
2074 8692 3.699038 GGGTACTTCAAATATGCCAAGCA 59.301 43.478 0.00 0.00 44.86 3.91
2093 8711 1.797046 CATCACATAGATGCGGTGAGC 59.203 52.381 0.00 0.00 46.90 4.26
2094 8712 3.439197 CATCACATAGATGCGGTGAGCC 61.439 54.545 0.00 0.00 46.90 4.70
2109 8727 2.069776 AGCCCAGCTCTTAAGTGCA 58.930 52.632 26.44 0.00 30.62 4.57
2110 8728 0.622665 AGCCCAGCTCTTAAGTGCAT 59.377 50.000 26.44 12.28 30.62 3.96
2111 8729 1.005215 AGCCCAGCTCTTAAGTGCATT 59.995 47.619 26.44 8.55 30.62 3.56
2112 8730 1.821136 GCCCAGCTCTTAAGTGCATTT 59.179 47.619 26.44 7.90 37.04 2.32
2113 8731 2.416431 GCCCAGCTCTTAAGTGCATTTG 60.416 50.000 26.44 17.47 37.04 2.32
2114 8732 3.084039 CCCAGCTCTTAAGTGCATTTGA 58.916 45.455 26.44 0.00 37.04 2.69
2115 8733 3.698040 CCCAGCTCTTAAGTGCATTTGAT 59.302 43.478 26.44 6.59 37.04 2.57
2116 8734 4.159135 CCCAGCTCTTAAGTGCATTTGATT 59.841 41.667 26.44 5.95 37.04 2.57
2117 8735 5.337009 CCCAGCTCTTAAGTGCATTTGATTT 60.337 40.000 26.44 5.30 37.04 2.17
2118 8736 5.803967 CCAGCTCTTAAGTGCATTTGATTTC 59.196 40.000 26.44 0.00 37.04 2.17
2119 8737 6.384224 CAGCTCTTAAGTGCATTTGATTTCA 58.616 36.000 26.44 0.00 37.04 2.69
2120 8738 7.033791 CAGCTCTTAAGTGCATTTGATTTCAT 58.966 34.615 26.44 3.56 37.04 2.57
2121 8739 7.544566 CAGCTCTTAAGTGCATTTGATTTCATT 59.455 33.333 26.44 3.38 37.04 2.57
2122 8740 8.092687 AGCTCTTAAGTGCATTTGATTTCATTT 58.907 29.630 26.44 3.00 37.04 2.32
2123 8741 8.378421 GCTCTTAAGTGCATTTGATTTCATTTC 58.622 33.333 21.51 0.00 34.92 2.17
2124 8742 8.761575 TCTTAAGTGCATTTGATTTCATTTCC 57.238 30.769 4.47 0.00 0.00 3.13
2125 8743 7.818930 TCTTAAGTGCATTTGATTTCATTTCCC 59.181 33.333 4.47 0.00 0.00 3.97
2126 8744 5.750352 AGTGCATTTGATTTCATTTCCCT 57.250 34.783 0.00 0.00 0.00 4.20
2127 8745 5.727434 AGTGCATTTGATTTCATTTCCCTC 58.273 37.500 0.00 0.00 0.00 4.30
2128 8746 5.246656 AGTGCATTTGATTTCATTTCCCTCA 59.753 36.000 0.00 0.00 0.00 3.86
2129 8747 6.070424 AGTGCATTTGATTTCATTTCCCTCAT 60.070 34.615 0.00 0.00 0.00 2.90
2130 8748 6.257193 GTGCATTTGATTTCATTTCCCTCATC 59.743 38.462 0.00 0.00 0.00 2.92
2131 8749 6.155565 TGCATTTGATTTCATTTCCCTCATCT 59.844 34.615 0.00 0.00 0.00 2.90
2132 8750 6.479001 GCATTTGATTTCATTTCCCTCATCTG 59.521 38.462 0.00 0.00 0.00 2.90
2133 8751 5.587388 TTGATTTCATTTCCCTCATCTGC 57.413 39.130 0.00 0.00 0.00 4.26
2134 8752 4.602107 TGATTTCATTTCCCTCATCTGCA 58.398 39.130 0.00 0.00 0.00 4.41
2135 8753 5.018149 TGATTTCATTTCCCTCATCTGCAA 58.982 37.500 0.00 0.00 0.00 4.08
2136 8754 5.659525 TGATTTCATTTCCCTCATCTGCAAT 59.340 36.000 0.00 0.00 0.00 3.56
2137 8755 4.994907 TTCATTTCCCTCATCTGCAATG 57.005 40.909 0.00 0.00 0.00 2.82
2138 8756 2.691526 TCATTTCCCTCATCTGCAATGC 59.308 45.455 0.00 0.00 0.00 3.56
2139 8757 2.519771 TTTCCCTCATCTGCAATGCT 57.480 45.000 6.82 0.00 0.00 3.79
2140 8758 2.048444 TTCCCTCATCTGCAATGCTC 57.952 50.000 6.82 0.00 0.00 4.26
2141 8759 0.179065 TCCCTCATCTGCAATGCTCG 60.179 55.000 6.82 0.00 0.00 5.03
2142 8760 1.647629 CCTCATCTGCAATGCTCGC 59.352 57.895 6.82 0.00 0.00 5.03
2143 8761 0.814410 CCTCATCTGCAATGCTCGCT 60.814 55.000 6.82 0.00 0.00 4.93
2144 8762 0.305009 CTCATCTGCAATGCTCGCTG 59.695 55.000 6.82 0.00 0.00 5.18
2145 8763 1.298413 CATCTGCAATGCTCGCTGC 60.298 57.895 6.82 0.00 43.25 5.25
2162 8780 4.758251 CATGTGCGCAGGTCGGGA 62.758 66.667 12.22 0.00 38.94 5.14
2163 8781 4.457496 ATGTGCGCAGGTCGGGAG 62.457 66.667 12.22 0.00 38.94 4.30
2165 8783 3.755628 GTGCGCAGGTCGGGAGTA 61.756 66.667 12.22 0.00 38.94 2.59
2166 8784 3.755628 TGCGCAGGTCGGGAGTAC 61.756 66.667 5.66 0.00 38.94 2.73
2167 8785 4.509737 GCGCAGGTCGGGAGTACC 62.510 72.222 0.30 0.00 38.94 3.34
2179 8797 0.466124 GGAGTACCCTCACAGCATCC 59.534 60.000 0.00 0.00 39.64 3.51
2180 8798 1.195115 GAGTACCCTCACAGCATCCA 58.805 55.000 0.00 0.00 37.67 3.41
2181 8799 1.555075 GAGTACCCTCACAGCATCCAA 59.445 52.381 0.00 0.00 37.67 3.53
2182 8800 1.279271 AGTACCCTCACAGCATCCAAC 59.721 52.381 0.00 0.00 0.00 3.77
2183 8801 0.618458 TACCCTCACAGCATCCAACC 59.382 55.000 0.00 0.00 0.00 3.77
2184 8802 1.746615 CCCTCACAGCATCCAACCG 60.747 63.158 0.00 0.00 0.00 4.44
2185 8803 1.746615 CCTCACAGCATCCAACCGG 60.747 63.158 0.00 0.00 0.00 5.28
2187 8805 1.003839 TCACAGCATCCAACCGGAC 60.004 57.895 9.46 0.00 46.79 4.79
2188 8806 1.003355 CACAGCATCCAACCGGACT 60.003 57.895 9.46 0.00 46.79 3.85
2189 8807 1.021390 CACAGCATCCAACCGGACTC 61.021 60.000 9.46 0.00 46.79 3.36
2190 8808 1.450312 CAGCATCCAACCGGACTCC 60.450 63.158 9.46 0.00 46.79 3.85
2191 8809 1.613630 AGCATCCAACCGGACTCCT 60.614 57.895 9.46 0.00 46.79 3.69
2192 8810 0.325296 AGCATCCAACCGGACTCCTA 60.325 55.000 9.46 0.00 46.79 2.94
2193 8811 0.759346 GCATCCAACCGGACTCCTAT 59.241 55.000 9.46 0.00 46.79 2.57
2194 8812 1.968493 GCATCCAACCGGACTCCTATA 59.032 52.381 9.46 0.00 46.79 1.31
2195 8813 2.288886 GCATCCAACCGGACTCCTATAC 60.289 54.545 9.46 0.00 46.79 1.47
2196 8814 2.077687 TCCAACCGGACTCCTATACC 57.922 55.000 9.46 0.00 35.91 2.73
2197 8815 1.046204 CCAACCGGACTCCTATACCC 58.954 60.000 9.46 0.00 0.00 3.69
2198 8816 0.672342 CAACCGGACTCCTATACCCG 59.328 60.000 9.46 0.00 41.47 5.28
2199 8817 1.111715 AACCGGACTCCTATACCCGC 61.112 60.000 9.46 0.00 40.56 6.13
2200 8818 2.273912 CCGGACTCCTATACCCGCC 61.274 68.421 0.00 0.00 40.56 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 1.388547 GATGGCGCCATGGTTCTTTA 58.611 50.000 44.96 13.11 36.70 1.85
134 136 1.869342 GCAACAACGCCTTCAAGCATT 60.869 47.619 0.00 0.00 0.00 3.56
183 185 1.006758 TGTAACTCCTCCCCGTCATCT 59.993 52.381 0.00 0.00 0.00 2.90
190 192 3.676093 CTTTCAACTGTAACTCCTCCCC 58.324 50.000 0.00 0.00 0.00 4.81
259 261 1.871080 GGCGAATTCTCGTCCATCAT 58.129 50.000 3.52 0.00 44.05 2.45
282 284 8.307483 TGACTTTCTAGTTTGTCCTAGATCTTG 58.693 37.037 0.00 0.00 42.20 3.02
294 296 8.378172 TGGACATAAACTGACTTTCTAGTTTG 57.622 34.615 11.40 1.24 44.36 2.93
300 302 6.708054 CAGTCTTGGACATAAACTGACTTTCT 59.292 38.462 0.00 0.00 39.72 2.52
330 332 3.788227 TGCTTCAGATACACCTTGGTT 57.212 42.857 0.00 0.00 0.00 3.67
368 370 0.030297 ATCTGACCCCTCCTGCATCT 60.030 55.000 0.00 0.00 0.00 2.90
450 452 0.820074 CCCTATCCTCGTCGTCAGCT 60.820 60.000 0.00 0.00 0.00 4.24
452 454 1.101635 TGCCCTATCCTCGTCGTCAG 61.102 60.000 0.00 0.00 0.00 3.51
475 477 4.020928 TCATGGCAATGAACAAAGAAGCAT 60.021 37.500 0.00 0.00 39.92 3.79
497 499 7.675062 AGTAGTGATCAAATGGTCATAGGATC 58.325 38.462 0.00 13.35 34.11 3.36
636 638 2.266055 CGCCACTCCTCACCCTTC 59.734 66.667 0.00 0.00 0.00 3.46
799 801 8.349568 ACTATGAGAACATCACTACTGTTGTA 57.650 34.615 0.00 0.00 41.91 2.41
848 850 2.425143 ATCCAACATCCACGCTTCAT 57.575 45.000 0.00 0.00 0.00 2.57
898 900 1.891150 GTACGAAGAGAACCACTCCCA 59.109 52.381 0.00 0.00 45.96 4.37
923 925 3.306472 AGGCTAAACCAAACTCACCAA 57.694 42.857 0.00 0.00 43.14 3.67
1141 1144 4.819105 TTATCACGGTCACCTCATCTTT 57.181 40.909 0.00 0.00 0.00 2.52
1161 1164 0.698818 AAGCCGTCCTCCCTTCAATT 59.301 50.000 0.00 0.00 0.00 2.32
1235 1238 1.089920 CGCTGCTATTCCTGCAACTT 58.910 50.000 0.00 0.00 40.13 2.66
1246 1249 0.678395 CCATGAGACTCCGCTGCTAT 59.322 55.000 0.00 0.00 0.00 2.97
1298 1301 8.526667 TGTATTCTTCATAGCTTACTGAGAGT 57.473 34.615 0.00 0.00 0.00 3.24
1313 1316 4.062293 CCGGACTTGTGTTGTATTCTTCA 58.938 43.478 0.00 0.00 0.00 3.02
1320 1323 2.957680 TGTACTCCGGACTTGTGTTGTA 59.042 45.455 0.00 0.00 0.00 2.41
1347 1350 7.225145 CACCTTGAATTTGTTCATGTGTCAAAT 59.775 33.333 14.52 14.52 41.51 2.32
1354 1357 6.068010 TCTACCACCTTGAATTTGTTCATGT 58.932 36.000 0.00 0.00 0.00 3.21
1359 1362 9.533831 AATATTCTCTACCACCTTGAATTTGTT 57.466 29.630 0.00 0.00 0.00 2.83
1387 7979 3.016736 ACACAACAAACTCCACCTTGAG 58.983 45.455 0.00 0.00 38.37 3.02
1388 7980 3.080300 ACACAACAAACTCCACCTTGA 57.920 42.857 0.00 0.00 0.00 3.02
1410 8002 8.388103 CCCAACTAGTACAAAATATTCGTCAAG 58.612 37.037 0.00 0.00 0.00 3.02
1411 8003 7.879160 ACCCAACTAGTACAAAATATTCGTCAA 59.121 33.333 0.00 0.00 0.00 3.18
1414 8006 9.154847 GTAACCCAACTAGTACAAAATATTCGT 57.845 33.333 0.00 0.00 0.00 3.85
1489 8088 1.604755 GCCAAATGTACAACGTGTCCA 59.395 47.619 0.00 0.00 0.00 4.02
1566 8169 2.651361 CGACTCCCTCTTGCGTGT 59.349 61.111 0.00 0.00 0.00 4.49
1608 8211 3.242706 CCGTCACAATATCGTACACCGTA 60.243 47.826 0.00 0.00 37.94 4.02
1650 8263 3.009695 ACATTTTCCGGGACCTGATTACA 59.990 43.478 0.00 0.00 0.00 2.41
1654 8267 2.421529 GCTACATTTTCCGGGACCTGAT 60.422 50.000 0.00 0.00 0.00 2.90
1660 8273 3.556213 CGATATGGCTACATTTTCCGGGA 60.556 47.826 0.00 0.00 38.53 5.14
1666 8279 5.885912 AGGTTCAACGATATGGCTACATTTT 59.114 36.000 0.00 0.00 38.53 1.82
1667 8280 5.437060 AGGTTCAACGATATGGCTACATTT 58.563 37.500 0.00 0.00 38.53 2.32
1668 8281 5.036117 AGGTTCAACGATATGGCTACATT 57.964 39.130 0.00 0.00 38.53 2.71
1683 8297 7.069331 ACACCAAGATTTGTTAATGAGGTTCAA 59.931 33.333 0.00 0.00 0.00 2.69
1692 8306 6.090358 CGAGTACGACACCAAGATTTGTTAAT 59.910 38.462 0.00 0.00 42.66 1.40
1704 8318 1.241165 ATCACACGAGTACGACACCA 58.759 50.000 0.00 0.00 42.66 4.17
1748 8364 6.879458 ACTGTTAGAATAAAATCGAGGCACTT 59.121 34.615 0.00 0.00 41.55 3.16
1774 8392 4.649674 AGTGATCCATGTATGTACGAACCT 59.350 41.667 0.00 0.00 0.00 3.50
1775 8393 4.945246 AGTGATCCATGTATGTACGAACC 58.055 43.478 0.00 0.00 0.00 3.62
1776 8394 6.967135 TCTAGTGATCCATGTATGTACGAAC 58.033 40.000 0.00 0.00 0.00 3.95
1777 8395 7.761038 ATCTAGTGATCCATGTATGTACGAA 57.239 36.000 0.00 0.00 0.00 3.85
1805 8423 8.800332 GCATACATATGGAAAGAGGAATGAATT 58.200 33.333 7.80 0.00 34.32 2.17
1806 8424 7.946219 TGCATACATATGGAAAGAGGAATGAAT 59.054 33.333 7.80 0.00 34.32 2.57
1807 8425 7.289310 TGCATACATATGGAAAGAGGAATGAA 58.711 34.615 7.80 0.00 34.32 2.57
1808 8426 6.840527 TGCATACATATGGAAAGAGGAATGA 58.159 36.000 7.80 0.00 34.32 2.57
1809 8427 7.148120 GGATGCATACATATGGAAAGAGGAATG 60.148 40.741 3.28 0.00 37.57 2.67
1810 8428 6.888632 GGATGCATACATATGGAAAGAGGAAT 59.111 38.462 3.28 0.00 37.57 3.01
1811 8429 6.183361 TGGATGCATACATATGGAAAGAGGAA 60.183 38.462 7.78 0.00 37.57 3.36
1812 8430 5.310331 TGGATGCATACATATGGAAAGAGGA 59.690 40.000 7.78 0.00 37.57 3.71
1813 8431 5.413833 GTGGATGCATACATATGGAAAGAGG 59.586 44.000 16.33 0.00 37.57 3.69
1814 8432 5.413833 GGTGGATGCATACATATGGAAAGAG 59.586 44.000 16.33 0.00 37.57 2.85
1815 8433 5.073554 AGGTGGATGCATACATATGGAAAGA 59.926 40.000 16.33 0.00 37.57 2.52
1816 8434 5.319453 AGGTGGATGCATACATATGGAAAG 58.681 41.667 16.33 0.00 37.57 2.62
1817 8435 5.323382 AGGTGGATGCATACATATGGAAA 57.677 39.130 16.33 0.00 37.57 3.13
1818 8436 4.999469 AGGTGGATGCATACATATGGAA 57.001 40.909 16.33 0.00 37.57 3.53
1819 8437 5.046376 CACTAGGTGGATGCATACATATGGA 60.046 44.000 16.33 0.00 36.35 3.41
1820 8438 5.181009 CACTAGGTGGATGCATACATATGG 58.819 45.833 16.33 11.17 36.35 2.74
1821 8439 5.798132 ACACTAGGTGGATGCATACATATG 58.202 41.667 16.33 11.39 37.94 1.78
1822 8440 5.046304 GGACACTAGGTGGATGCATACATAT 60.046 44.000 16.33 9.44 37.94 1.78
1823 8441 4.283467 GGACACTAGGTGGATGCATACATA 59.717 45.833 16.33 3.29 37.94 2.29
1824 8442 3.071602 GGACACTAGGTGGATGCATACAT 59.928 47.826 16.33 2.02 37.94 2.29
1825 8443 2.434336 GGACACTAGGTGGATGCATACA 59.566 50.000 7.78 7.78 37.94 2.29
1826 8444 2.434336 TGGACACTAGGTGGATGCATAC 59.566 50.000 0.42 0.42 37.94 2.39
1827 8445 2.758130 TGGACACTAGGTGGATGCATA 58.242 47.619 0.00 0.00 37.94 3.14
1828 8446 1.583556 TGGACACTAGGTGGATGCAT 58.416 50.000 0.00 0.00 37.94 3.96
1829 8447 1.357137 TTGGACACTAGGTGGATGCA 58.643 50.000 0.00 0.00 37.94 3.96
1830 8448 2.092968 TGATTGGACACTAGGTGGATGC 60.093 50.000 0.00 0.00 37.94 3.91
1831 8449 3.801698 CTGATTGGACACTAGGTGGATG 58.198 50.000 0.00 0.00 37.94 3.51
1832 8450 2.171448 GCTGATTGGACACTAGGTGGAT 59.829 50.000 0.00 0.00 37.94 3.41
1833 8451 1.555075 GCTGATTGGACACTAGGTGGA 59.445 52.381 0.00 0.00 37.94 4.02
1834 8452 1.556911 AGCTGATTGGACACTAGGTGG 59.443 52.381 0.00 0.00 37.94 4.61
1835 8453 3.055530 AGAAGCTGATTGGACACTAGGTG 60.056 47.826 0.00 0.00 39.75 4.00
1836 8454 3.177228 AGAAGCTGATTGGACACTAGGT 58.823 45.455 0.00 0.00 0.00 3.08
1837 8455 3.902881 AGAAGCTGATTGGACACTAGG 57.097 47.619 0.00 0.00 0.00 3.02
1838 8456 4.367450 GCTAGAAGCTGATTGGACACTAG 58.633 47.826 0.00 0.00 38.45 2.57
1839 8457 4.392921 GCTAGAAGCTGATTGGACACTA 57.607 45.455 0.00 0.00 38.45 2.74
1840 8458 3.258971 GCTAGAAGCTGATTGGACACT 57.741 47.619 0.00 0.00 38.45 3.55
1852 8470 7.371126 ACTGAACTGAAAATTAGCTAGAAGC 57.629 36.000 0.00 0.00 42.84 3.86
1855 8473 9.809096 CTGATACTGAACTGAAAATTAGCTAGA 57.191 33.333 0.00 0.00 0.00 2.43
1856 8474 9.593134 ACTGATACTGAACTGAAAATTAGCTAG 57.407 33.333 0.00 0.00 0.00 3.42
1857 8475 9.587772 GACTGATACTGAACTGAAAATTAGCTA 57.412 33.333 0.00 0.00 0.00 3.32
1858 8476 8.097038 TGACTGATACTGAACTGAAAATTAGCT 58.903 33.333 0.00 0.00 0.00 3.32
1859 8477 8.171840 GTGACTGATACTGAACTGAAAATTAGC 58.828 37.037 0.00 0.00 0.00 3.09
1860 8478 9.208022 TGTGACTGATACTGAACTGAAAATTAG 57.792 33.333 0.00 0.00 0.00 1.73
1861 8479 9.725019 ATGTGACTGATACTGAACTGAAAATTA 57.275 29.630 0.00 0.00 0.00 1.40
1862 8480 8.627208 ATGTGACTGATACTGAACTGAAAATT 57.373 30.769 0.00 0.00 0.00 1.82
1863 8481 8.627208 AATGTGACTGATACTGAACTGAAAAT 57.373 30.769 0.00 0.00 0.00 1.82
1864 8482 8.450578 AAATGTGACTGATACTGAACTGAAAA 57.549 30.769 0.00 0.00 0.00 2.29
1865 8483 8.450578 AAAATGTGACTGATACTGAACTGAAA 57.549 30.769 0.00 0.00 0.00 2.69
1866 8484 7.714813 TGAAAATGTGACTGATACTGAACTGAA 59.285 33.333 0.00 0.00 0.00 3.02
1867 8485 7.216494 TGAAAATGTGACTGATACTGAACTGA 58.784 34.615 0.00 0.00 0.00 3.41
1868 8486 7.425577 TGAAAATGTGACTGATACTGAACTG 57.574 36.000 0.00 0.00 0.00 3.16
1869 8487 7.335422 GGATGAAAATGTGACTGATACTGAACT 59.665 37.037 0.00 0.00 0.00 3.01
1870 8488 7.335422 AGGATGAAAATGTGACTGATACTGAAC 59.665 37.037 0.00 0.00 0.00 3.18
1871 8489 7.397221 AGGATGAAAATGTGACTGATACTGAA 58.603 34.615 0.00 0.00 0.00 3.02
1872 8490 6.950842 AGGATGAAAATGTGACTGATACTGA 58.049 36.000 0.00 0.00 0.00 3.41
1873 8491 7.335171 TGAAGGATGAAAATGTGACTGATACTG 59.665 37.037 0.00 0.00 0.00 2.74
1874 8492 7.397221 TGAAGGATGAAAATGTGACTGATACT 58.603 34.615 0.00 0.00 0.00 2.12
1875 8493 7.615582 TGAAGGATGAAAATGTGACTGATAC 57.384 36.000 0.00 0.00 0.00 2.24
1876 8494 6.317140 GCTGAAGGATGAAAATGTGACTGATA 59.683 38.462 0.00 0.00 0.00 2.15
1877 8495 5.125097 GCTGAAGGATGAAAATGTGACTGAT 59.875 40.000 0.00 0.00 0.00 2.90
1878 8496 4.456911 GCTGAAGGATGAAAATGTGACTGA 59.543 41.667 0.00 0.00 0.00 3.41
1879 8497 4.216902 TGCTGAAGGATGAAAATGTGACTG 59.783 41.667 0.00 0.00 0.00 3.51
1880 8498 4.401022 TGCTGAAGGATGAAAATGTGACT 58.599 39.130 0.00 0.00 0.00 3.41
1881 8499 4.771590 TGCTGAAGGATGAAAATGTGAC 57.228 40.909 0.00 0.00 0.00 3.67
1882 8500 5.244402 ACAATGCTGAAGGATGAAAATGTGA 59.756 36.000 0.00 0.00 0.00 3.58
1883 8501 5.347635 CACAATGCTGAAGGATGAAAATGTG 59.652 40.000 0.98 0.98 0.00 3.21
1884 8502 5.011329 ACACAATGCTGAAGGATGAAAATGT 59.989 36.000 0.00 0.00 0.00 2.71
1885 8503 5.475719 ACACAATGCTGAAGGATGAAAATG 58.524 37.500 0.00 0.00 0.00 2.32
1886 8504 5.733620 ACACAATGCTGAAGGATGAAAAT 57.266 34.783 0.00 0.00 0.00 1.82
1887 8505 6.489700 TCTTACACAATGCTGAAGGATGAAAA 59.510 34.615 0.00 0.00 0.00 2.29
1888 8506 6.003326 TCTTACACAATGCTGAAGGATGAAA 58.997 36.000 0.00 0.00 0.00 2.69
1889 8507 5.412594 GTCTTACACAATGCTGAAGGATGAA 59.587 40.000 0.00 0.00 0.00 2.57
1890 8508 4.937620 GTCTTACACAATGCTGAAGGATGA 59.062 41.667 0.00 0.00 0.00 2.92
1891 8509 4.095483 GGTCTTACACAATGCTGAAGGATG 59.905 45.833 0.00 0.00 0.00 3.51
1892 8510 4.263462 TGGTCTTACACAATGCTGAAGGAT 60.263 41.667 0.00 0.00 0.00 3.24
1893 8511 3.072330 TGGTCTTACACAATGCTGAAGGA 59.928 43.478 0.00 0.00 0.00 3.36
1894 8512 3.411446 TGGTCTTACACAATGCTGAAGG 58.589 45.455 0.00 0.00 0.00 3.46
1895 8513 4.153117 GTCTGGTCTTACACAATGCTGAAG 59.847 45.833 0.00 0.00 0.00 3.02
1896 8514 4.065088 GTCTGGTCTTACACAATGCTGAA 58.935 43.478 0.00 0.00 0.00 3.02
1897 8515 3.070878 TGTCTGGTCTTACACAATGCTGA 59.929 43.478 0.00 0.00 0.00 4.26
1898 8516 3.402110 TGTCTGGTCTTACACAATGCTG 58.598 45.455 0.00 0.00 0.00 4.41
1899 8517 3.769739 TGTCTGGTCTTACACAATGCT 57.230 42.857 0.00 0.00 0.00 3.79
1900 8518 3.563808 TGTTGTCTGGTCTTACACAATGC 59.436 43.478 0.00 0.00 31.65 3.56
1901 8519 5.510671 GTTGTTGTCTGGTCTTACACAATG 58.489 41.667 0.00 0.00 31.65 2.82
1902 8520 4.272504 CGTTGTTGTCTGGTCTTACACAAT 59.727 41.667 0.00 0.00 31.65 2.71
1903 8521 3.619483 CGTTGTTGTCTGGTCTTACACAA 59.381 43.478 0.00 0.00 0.00 3.33
1904 8522 3.191669 CGTTGTTGTCTGGTCTTACACA 58.808 45.455 0.00 0.00 0.00 3.72
1905 8523 2.033151 GCGTTGTTGTCTGGTCTTACAC 60.033 50.000 0.00 0.00 0.00 2.90
1906 8524 2.206750 GCGTTGTTGTCTGGTCTTACA 58.793 47.619 0.00 0.00 0.00 2.41
1907 8525 2.206750 TGCGTTGTTGTCTGGTCTTAC 58.793 47.619 0.00 0.00 0.00 2.34
1908 8526 2.605837 TGCGTTGTTGTCTGGTCTTA 57.394 45.000 0.00 0.00 0.00 2.10
1909 8527 1.745232 TTGCGTTGTTGTCTGGTCTT 58.255 45.000 0.00 0.00 0.00 3.01
1910 8528 1.745232 TTTGCGTTGTTGTCTGGTCT 58.255 45.000 0.00 0.00 0.00 3.85
1911 8529 2.553079 TTTTGCGTTGTTGTCTGGTC 57.447 45.000 0.00 0.00 0.00 4.02
1912 8530 3.119316 TGATTTTTGCGTTGTTGTCTGGT 60.119 39.130 0.00 0.00 0.00 4.00
1913 8531 3.242712 GTGATTTTTGCGTTGTTGTCTGG 59.757 43.478 0.00 0.00 0.00 3.86
1914 8532 4.027458 CAGTGATTTTTGCGTTGTTGTCTG 60.027 41.667 0.00 0.00 0.00 3.51
1915 8533 4.104776 CAGTGATTTTTGCGTTGTTGTCT 58.895 39.130 0.00 0.00 0.00 3.41
1916 8534 3.301771 GCAGTGATTTTTGCGTTGTTGTC 60.302 43.478 0.00 0.00 0.00 3.18
1917 8535 2.602660 GCAGTGATTTTTGCGTTGTTGT 59.397 40.909 0.00 0.00 0.00 3.32
1918 8536 2.859538 AGCAGTGATTTTTGCGTTGTTG 59.140 40.909 0.00 0.00 44.80 3.33
1919 8537 3.163630 AGCAGTGATTTTTGCGTTGTT 57.836 38.095 0.00 0.00 44.80 2.83
1920 8538 2.859538 CAAGCAGTGATTTTTGCGTTGT 59.140 40.909 0.00 0.00 44.80 3.32
1921 8539 3.114809 TCAAGCAGTGATTTTTGCGTTG 58.885 40.909 0.00 0.00 44.80 4.10
1922 8540 3.374745 CTCAAGCAGTGATTTTTGCGTT 58.625 40.909 0.00 0.00 44.80 4.84
1923 8541 2.859806 GCTCAAGCAGTGATTTTTGCGT 60.860 45.455 0.00 0.00 44.80 5.24
1924 8542 1.717645 GCTCAAGCAGTGATTTTTGCG 59.282 47.619 0.00 0.00 44.80 4.85
1925 8543 1.717645 CGCTCAAGCAGTGATTTTTGC 59.282 47.619 2.50 0.00 42.21 3.68
1926 8544 2.322161 CCGCTCAAGCAGTGATTTTTG 58.678 47.619 2.50 0.00 42.21 2.44
1927 8545 1.270550 CCCGCTCAAGCAGTGATTTTT 59.729 47.619 2.50 0.00 42.21 1.94
1928 8546 0.883833 CCCGCTCAAGCAGTGATTTT 59.116 50.000 2.50 0.00 42.21 1.82
1929 8547 0.250901 ACCCGCTCAAGCAGTGATTT 60.251 50.000 2.50 0.00 42.21 2.17
1930 8548 0.674895 GACCCGCTCAAGCAGTGATT 60.675 55.000 2.50 0.00 42.21 2.57
1931 8549 1.078848 GACCCGCTCAAGCAGTGAT 60.079 57.895 2.50 0.00 42.21 3.06
1932 8550 2.038814 TTGACCCGCTCAAGCAGTGA 62.039 55.000 2.50 0.00 42.21 3.41
1933 8551 1.165907 TTTGACCCGCTCAAGCAGTG 61.166 55.000 2.50 0.00 40.12 3.66
1934 8552 1.148273 TTTGACCCGCTCAAGCAGT 59.852 52.632 2.50 0.00 40.12 4.40
1935 8553 1.165907 TGTTTGACCCGCTCAAGCAG 61.166 55.000 2.50 0.00 43.12 4.24
1936 8554 1.153066 TGTTTGACCCGCTCAAGCA 60.153 52.632 2.50 6.53 45.07 3.91
1937 8555 0.884704 TCTGTTTGACCCGCTCAAGC 60.885 55.000 0.00 0.00 40.12 4.01
1938 8556 0.868406 GTCTGTTTGACCCGCTCAAG 59.132 55.000 0.00 0.00 40.12 3.02
1939 8557 0.878523 CGTCTGTTTGACCCGCTCAA 60.879 55.000 0.00 0.00 42.49 3.02
1940 8558 1.300620 CGTCTGTTTGACCCGCTCA 60.301 57.895 0.00 0.00 42.49 4.26
1941 8559 0.599204 TTCGTCTGTTTGACCCGCTC 60.599 55.000 0.00 0.00 42.49 5.03
1942 8560 0.179067 TTTCGTCTGTTTGACCCGCT 60.179 50.000 0.00 0.00 42.49 5.52
1943 8561 0.658897 TTTTCGTCTGTTTGACCCGC 59.341 50.000 0.00 0.00 42.49 6.13
1960 8578 8.870160 TTTCAGTTCGACATCATTCAATTTTT 57.130 26.923 0.00 0.00 0.00 1.94
1961 8579 8.870160 TTTTCAGTTCGACATCATTCAATTTT 57.130 26.923 0.00 0.00 0.00 1.82
1962 8580 8.918658 CATTTTCAGTTCGACATCATTCAATTT 58.081 29.630 0.00 0.00 0.00 1.82
1963 8581 8.298854 TCATTTTCAGTTCGACATCATTCAATT 58.701 29.630 0.00 0.00 0.00 2.32
1964 8582 7.819644 TCATTTTCAGTTCGACATCATTCAAT 58.180 30.769 0.00 0.00 0.00 2.57
1965 8583 7.041167 ACTCATTTTCAGTTCGACATCATTCAA 60.041 33.333 0.00 0.00 0.00 2.69
1966 8584 6.427853 ACTCATTTTCAGTTCGACATCATTCA 59.572 34.615 0.00 0.00 0.00 2.57
1967 8585 6.740002 CACTCATTTTCAGTTCGACATCATTC 59.260 38.462 0.00 0.00 0.00 2.67
1968 8586 6.205464 ACACTCATTTTCAGTTCGACATCATT 59.795 34.615 0.00 0.00 0.00 2.57
1969 8587 5.702670 ACACTCATTTTCAGTTCGACATCAT 59.297 36.000 0.00 0.00 0.00 2.45
1970 8588 5.056480 ACACTCATTTTCAGTTCGACATCA 58.944 37.500 0.00 0.00 0.00 3.07
1971 8589 5.597813 ACACTCATTTTCAGTTCGACATC 57.402 39.130 0.00 0.00 0.00 3.06
1972 8590 7.672983 ATTACACTCATTTTCAGTTCGACAT 57.327 32.000 0.00 0.00 0.00 3.06
1973 8591 7.441157 AGAATTACACTCATTTTCAGTTCGACA 59.559 33.333 0.00 0.00 0.00 4.35
1974 8592 7.797819 AGAATTACACTCATTTTCAGTTCGAC 58.202 34.615 0.00 0.00 0.00 4.20
1975 8593 7.962964 AGAATTACACTCATTTTCAGTTCGA 57.037 32.000 0.00 0.00 0.00 3.71
1976 8594 9.107367 GAAAGAATTACACTCATTTTCAGTTCG 57.893 33.333 0.00 0.00 0.00 3.95
1977 8595 9.107367 CGAAAGAATTACACTCATTTTCAGTTC 57.893 33.333 0.00 0.00 0.00 3.01
1978 8596 8.621286 ACGAAAGAATTACACTCATTTTCAGTT 58.379 29.630 0.00 0.00 0.00 3.16
1979 8597 8.154649 ACGAAAGAATTACACTCATTTTCAGT 57.845 30.769 0.00 0.00 0.00 3.41
1980 8598 9.107367 GAACGAAAGAATTACACTCATTTTCAG 57.893 33.333 0.00 0.00 0.00 3.02
1981 8599 8.073768 GGAACGAAAGAATTACACTCATTTTCA 58.926 33.333 0.00 0.00 0.00 2.69
1982 8600 8.073768 TGGAACGAAAGAATTACACTCATTTTC 58.926 33.333 0.00 0.00 0.00 2.29
1983 8601 7.936584 TGGAACGAAAGAATTACACTCATTTT 58.063 30.769 0.00 0.00 0.00 1.82
1984 8602 7.504924 TGGAACGAAAGAATTACACTCATTT 57.495 32.000 0.00 0.00 0.00 2.32
1985 8603 7.504924 TTGGAACGAAAGAATTACACTCATT 57.495 32.000 0.00 0.00 0.00 2.57
1986 8604 7.390440 TCATTGGAACGAAAGAATTACACTCAT 59.610 33.333 0.00 0.00 0.00 2.90
1987 8605 6.708502 TCATTGGAACGAAAGAATTACACTCA 59.291 34.615 0.00 0.00 0.00 3.41
1988 8606 7.015877 GTCATTGGAACGAAAGAATTACACTC 58.984 38.462 0.00 0.00 0.00 3.51
1989 8607 6.485313 TGTCATTGGAACGAAAGAATTACACT 59.515 34.615 0.00 0.00 0.00 3.55
1990 8608 6.664515 TGTCATTGGAACGAAAGAATTACAC 58.335 36.000 0.00 0.00 0.00 2.90
1991 8609 6.708502 TCTGTCATTGGAACGAAAGAATTACA 59.291 34.615 0.00 0.00 0.00 2.41
1992 8610 7.129109 TCTGTCATTGGAACGAAAGAATTAC 57.871 36.000 0.00 0.00 0.00 1.89
1993 8611 7.148255 CCATCTGTCATTGGAACGAAAGAATTA 60.148 37.037 0.00 0.00 34.81 1.40
1994 8612 6.349611 CCATCTGTCATTGGAACGAAAGAATT 60.350 38.462 0.00 0.00 34.81 2.17
1995 8613 5.124457 CCATCTGTCATTGGAACGAAAGAAT 59.876 40.000 0.00 0.00 34.81 2.40
1996 8614 4.455533 CCATCTGTCATTGGAACGAAAGAA 59.544 41.667 0.00 0.00 34.81 2.52
1997 8615 4.002982 CCATCTGTCATTGGAACGAAAGA 58.997 43.478 0.00 0.00 34.81 2.52
1998 8616 3.426695 GCCATCTGTCATTGGAACGAAAG 60.427 47.826 6.21 0.00 34.81 2.62
1999 8617 2.487762 GCCATCTGTCATTGGAACGAAA 59.512 45.455 6.21 0.00 34.81 3.46
2000 8618 2.083774 GCCATCTGTCATTGGAACGAA 58.916 47.619 6.21 0.00 34.81 3.85
2001 8619 1.737838 GCCATCTGTCATTGGAACGA 58.262 50.000 6.21 0.00 34.81 3.85
2002 8620 0.374758 CGCCATCTGTCATTGGAACG 59.625 55.000 6.21 0.00 34.81 3.95
2003 8621 1.453155 ACGCCATCTGTCATTGGAAC 58.547 50.000 6.21 0.00 34.81 3.62
2004 8622 1.811965 CAACGCCATCTGTCATTGGAA 59.188 47.619 6.21 0.00 34.81 3.53
2005 8623 1.452110 CAACGCCATCTGTCATTGGA 58.548 50.000 6.21 0.00 34.81 3.53
2006 8624 0.179156 GCAACGCCATCTGTCATTGG 60.179 55.000 0.00 0.00 36.03 3.16
2007 8625 3.317608 GCAACGCCATCTGTCATTG 57.682 52.632 0.00 0.00 0.00 2.82
2025 8643 1.215173 TGTTCATCTTGGCCATAGGGG 59.785 52.381 6.09 3.65 40.85 4.79
2026 8644 2.734755 TGTTCATCTTGGCCATAGGG 57.265 50.000 6.09 0.00 37.18 3.53
2027 8645 2.360165 GCTTGTTCATCTTGGCCATAGG 59.640 50.000 6.09 0.00 0.00 2.57
2028 8646 3.066342 CAGCTTGTTCATCTTGGCCATAG 59.934 47.826 6.09 7.48 0.00 2.23
2029 8647 3.018856 CAGCTTGTTCATCTTGGCCATA 58.981 45.455 6.09 0.00 0.00 2.74
2030 8648 1.822990 CAGCTTGTTCATCTTGGCCAT 59.177 47.619 6.09 0.00 0.00 4.40
2031 8649 1.202915 TCAGCTTGTTCATCTTGGCCA 60.203 47.619 0.00 0.00 0.00 5.36
2032 8650 1.471684 CTCAGCTTGTTCATCTTGGCC 59.528 52.381 0.00 0.00 0.00 5.36
2033 8651 1.471684 CCTCAGCTTGTTCATCTTGGC 59.528 52.381 0.00 0.00 0.00 4.52
2034 8652 2.089980 CCCTCAGCTTGTTCATCTTGG 58.910 52.381 0.00 0.00 0.00 3.61
2035 8653 2.787994 ACCCTCAGCTTGTTCATCTTG 58.212 47.619 0.00 0.00 0.00 3.02
2036 8654 3.584848 AGTACCCTCAGCTTGTTCATCTT 59.415 43.478 0.00 0.00 0.00 2.40
2037 8655 3.177228 AGTACCCTCAGCTTGTTCATCT 58.823 45.455 0.00 0.00 0.00 2.90
2038 8656 3.618690 AGTACCCTCAGCTTGTTCATC 57.381 47.619 0.00 0.00 0.00 2.92
2039 8657 3.327757 TGAAGTACCCTCAGCTTGTTCAT 59.672 43.478 0.00 0.00 0.00 2.57
2040 8658 2.703536 TGAAGTACCCTCAGCTTGTTCA 59.296 45.455 0.00 0.00 0.00 3.18
2041 8659 3.402628 TGAAGTACCCTCAGCTTGTTC 57.597 47.619 0.00 0.00 0.00 3.18
2042 8660 3.857157 TTGAAGTACCCTCAGCTTGTT 57.143 42.857 0.00 0.00 0.00 2.83
2043 8661 3.857157 TTTGAAGTACCCTCAGCTTGT 57.143 42.857 0.00 0.00 0.00 3.16
2044 8662 5.220931 GCATATTTGAAGTACCCTCAGCTTG 60.221 44.000 0.00 0.00 0.00 4.01
2045 8663 4.884164 GCATATTTGAAGTACCCTCAGCTT 59.116 41.667 0.00 0.00 0.00 3.74
2046 8664 4.455606 GCATATTTGAAGTACCCTCAGCT 58.544 43.478 0.00 0.00 0.00 4.24
2047 8665 3.565902 GGCATATTTGAAGTACCCTCAGC 59.434 47.826 0.00 0.00 0.00 4.26
2048 8666 4.780815 TGGCATATTTGAAGTACCCTCAG 58.219 43.478 0.00 0.00 0.00 3.35
2049 8667 4.853468 TGGCATATTTGAAGTACCCTCA 57.147 40.909 0.00 0.00 0.00 3.86
2050 8668 4.036852 GCTTGGCATATTTGAAGTACCCTC 59.963 45.833 0.00 0.00 0.00 4.30
2051 8669 3.954258 GCTTGGCATATTTGAAGTACCCT 59.046 43.478 0.00 0.00 0.00 4.34
2052 8670 3.699038 TGCTTGGCATATTTGAAGTACCC 59.301 43.478 0.00 0.00 31.71 3.69
2053 8671 4.981806 TGCTTGGCATATTTGAAGTACC 57.018 40.909 0.00 0.00 31.71 3.34
2074 8692 1.270518 GGCTCACCGCATCTATGTGAT 60.271 52.381 5.09 0.00 40.61 3.06
2075 8693 0.104855 GGCTCACCGCATCTATGTGA 59.895 55.000 5.09 0.00 40.61 3.58
2076 8694 0.882042 GGGCTCACCGCATCTATGTG 60.882 60.000 0.00 0.00 41.67 3.21
2077 8695 1.337384 TGGGCTCACCGCATCTATGT 61.337 55.000 0.00 0.00 44.64 2.29
2078 8696 0.602106 CTGGGCTCACCGCATCTATG 60.602 60.000 0.00 0.00 44.64 2.23
2079 8697 1.750930 CTGGGCTCACCGCATCTAT 59.249 57.895 0.00 0.00 44.64 1.98
2080 8698 3.094062 GCTGGGCTCACCGCATCTA 62.094 63.158 0.00 0.00 44.64 1.98
2081 8699 4.479993 GCTGGGCTCACCGCATCT 62.480 66.667 0.00 0.00 44.64 2.90
2082 8700 4.479993 AGCTGGGCTCACCGCATC 62.480 66.667 0.13 0.00 44.64 3.91
2091 8709 0.622665 ATGCACTTAAGAGCTGGGCT 59.377 50.000 22.76 0.00 43.88 5.19
2092 8710 1.467920 AATGCACTTAAGAGCTGGGC 58.532 50.000 22.76 10.49 32.76 5.36
2093 8711 3.084039 TCAAATGCACTTAAGAGCTGGG 58.916 45.455 22.76 11.60 32.76 4.45
2094 8712 4.978083 ATCAAATGCACTTAAGAGCTGG 57.022 40.909 22.76 11.31 32.76 4.85
2095 8713 6.384224 TGAAATCAAATGCACTTAAGAGCTG 58.616 36.000 22.76 14.31 32.76 4.24
2096 8714 6.579666 TGAAATCAAATGCACTTAAGAGCT 57.420 33.333 22.76 8.35 32.76 4.09
2097 8715 7.823149 AATGAAATCAAATGCACTTAAGAGC 57.177 32.000 16.90 16.90 0.00 4.09
2098 8716 8.866956 GGAAATGAAATCAAATGCACTTAAGAG 58.133 33.333 10.09 1.84 0.00 2.85
2099 8717 7.818930 GGGAAATGAAATCAAATGCACTTAAGA 59.181 33.333 10.09 0.00 0.00 2.10
2100 8718 7.820872 AGGGAAATGAAATCAAATGCACTTAAG 59.179 33.333 0.00 0.00 0.00 1.85
2101 8719 7.678837 AGGGAAATGAAATCAAATGCACTTAA 58.321 30.769 0.00 0.00 0.00 1.85
2102 8720 7.039152 TGAGGGAAATGAAATCAAATGCACTTA 60.039 33.333 0.00 0.00 0.00 2.24
2103 8721 6.117975 AGGGAAATGAAATCAAATGCACTT 57.882 33.333 0.00 0.00 0.00 3.16
2104 8722 5.246656 TGAGGGAAATGAAATCAAATGCACT 59.753 36.000 0.00 0.00 0.00 4.40
2105 8723 5.481105 TGAGGGAAATGAAATCAAATGCAC 58.519 37.500 0.00 0.00 0.00 4.57
2106 8724 5.741962 TGAGGGAAATGAAATCAAATGCA 57.258 34.783 0.00 0.00 0.00 3.96
2107 8725 6.479001 CAGATGAGGGAAATGAAATCAAATGC 59.521 38.462 0.00 0.00 0.00 3.56
2108 8726 6.479001 GCAGATGAGGGAAATGAAATCAAATG 59.521 38.462 0.00 0.00 0.00 2.32
2109 8727 6.155565 TGCAGATGAGGGAAATGAAATCAAAT 59.844 34.615 0.00 0.00 0.00 2.32
2110 8728 5.481122 TGCAGATGAGGGAAATGAAATCAAA 59.519 36.000 0.00 0.00 0.00 2.69
2111 8729 5.018149 TGCAGATGAGGGAAATGAAATCAA 58.982 37.500 0.00 0.00 0.00 2.57
2112 8730 4.602107 TGCAGATGAGGGAAATGAAATCA 58.398 39.130 0.00 0.00 0.00 2.57
2113 8731 5.587388 TTGCAGATGAGGGAAATGAAATC 57.413 39.130 0.00 0.00 0.00 2.17
2114 8732 5.684030 GCATTGCAGATGAGGGAAATGAAAT 60.684 40.000 3.15 0.00 0.00 2.17
2115 8733 4.382254 GCATTGCAGATGAGGGAAATGAAA 60.382 41.667 3.15 0.00 0.00 2.69
2116 8734 3.131577 GCATTGCAGATGAGGGAAATGAA 59.868 43.478 3.15 0.00 0.00 2.57
2117 8735 2.691526 GCATTGCAGATGAGGGAAATGA 59.308 45.455 3.15 0.00 0.00 2.57
2118 8736 2.693591 AGCATTGCAGATGAGGGAAATG 59.306 45.455 11.91 0.00 0.00 2.32
2119 8737 2.957006 GAGCATTGCAGATGAGGGAAAT 59.043 45.455 11.91 0.00 0.00 2.17
2120 8738 2.372264 GAGCATTGCAGATGAGGGAAA 58.628 47.619 11.91 0.00 0.00 3.13
2121 8739 1.744798 CGAGCATTGCAGATGAGGGAA 60.745 52.381 11.91 0.00 0.00 3.97
2122 8740 0.179065 CGAGCATTGCAGATGAGGGA 60.179 55.000 11.91 0.00 0.00 4.20
2123 8741 2.318224 CGAGCATTGCAGATGAGGG 58.682 57.895 11.91 0.00 0.00 4.30
2145 8763 4.758251 TCCCGACCTGCGCACATG 62.758 66.667 5.66 0.00 39.11 3.21
2146 8764 4.457496 CTCCCGACCTGCGCACAT 62.457 66.667 5.66 0.00 39.11 3.21
2148 8766 3.755628 TACTCCCGACCTGCGCAC 61.756 66.667 5.66 0.00 39.11 5.34
2149 8767 3.755628 GTACTCCCGACCTGCGCA 61.756 66.667 10.98 10.98 39.11 6.09
2150 8768 4.509737 GGTACTCCCGACCTGCGC 62.510 72.222 0.00 0.00 39.11 6.09
2151 8769 3.834799 GGGTACTCCCGACCTGCG 61.835 72.222 0.00 0.00 44.74 5.18
2160 8778 0.466124 GGATGCTGTGAGGGTACTCC 59.534 60.000 0.00 0.00 43.29 3.85
2161 8779 1.195115 TGGATGCTGTGAGGGTACTC 58.805 55.000 0.00 0.00 44.23 2.59
2162 8780 1.279271 GTTGGATGCTGTGAGGGTACT 59.721 52.381 0.00 0.00 0.00 2.73
2163 8781 1.679032 GGTTGGATGCTGTGAGGGTAC 60.679 57.143 0.00 0.00 0.00 3.34
2164 8782 0.618458 GGTTGGATGCTGTGAGGGTA 59.382 55.000 0.00 0.00 0.00 3.69
2165 8783 1.380302 GGTTGGATGCTGTGAGGGT 59.620 57.895 0.00 0.00 0.00 4.34
2166 8784 1.746615 CGGTTGGATGCTGTGAGGG 60.747 63.158 0.00 0.00 0.00 4.30
2167 8785 1.746615 CCGGTTGGATGCTGTGAGG 60.747 63.158 0.00 0.00 37.49 3.86
2168 8786 1.296392 TCCGGTTGGATGCTGTGAG 59.704 57.895 0.00 0.00 40.17 3.51
2169 8787 3.477582 TCCGGTTGGATGCTGTGA 58.522 55.556 0.00 0.00 40.17 3.58
2177 8795 1.412074 GGGTATAGGAGTCCGGTTGGA 60.412 57.143 2.76 0.00 43.88 3.53
2178 8796 1.046204 GGGTATAGGAGTCCGGTTGG 58.954 60.000 2.76 0.00 0.00 3.77
2179 8797 0.672342 CGGGTATAGGAGTCCGGTTG 59.328 60.000 2.76 0.00 38.93 3.77
2180 8798 1.111715 GCGGGTATAGGAGTCCGGTT 61.112 60.000 2.76 0.00 42.43 4.44
2181 8799 1.530183 GCGGGTATAGGAGTCCGGT 60.530 63.158 2.76 0.00 42.43 5.28
2182 8800 2.273912 GGCGGGTATAGGAGTCCGG 61.274 68.421 2.76 0.00 42.43 5.14
2183 8801 3.363351 GGCGGGTATAGGAGTCCG 58.637 66.667 2.76 0.00 44.70 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.