Multiple sequence alignment - TraesCS5A01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G327200 chr5A 100.000 4505 0 0 2341 6845 536988061 536983557 0.000000e+00 8320.0
1 TraesCS5A01G327200 chr5A 100.000 1976 0 0 1 1976 536990401 536988426 0.000000e+00 3650.0
2 TraesCS5A01G327200 chr5A 86.667 90 12 0 353 442 580742855 580742766 4.370000e-17 100.0
3 TraesCS5A01G327200 chr5A 87.931 58 5 2 6774 6830 662389904 662389960 4.430000e-07 67.6
4 TraesCS5A01G327200 chr5D 95.673 4368 124 28 2341 6666 423506045 423501701 0.000000e+00 6959.0
5 TraesCS5A01G327200 chr5D 89.100 1578 66 37 433 1932 423507655 423506106 0.000000e+00 1864.0
6 TraesCS5A01G327200 chr5D 93.431 137 8 1 17 152 423507813 423507677 1.160000e-47 202.0
7 TraesCS5A01G327200 chr5D 95.082 122 5 1 6724 6845 423501700 423501580 2.520000e-44 191.0
8 TraesCS5A01G327200 chr5B 85.645 1449 143 32 5256 6656 511307583 511306152 0.000000e+00 1463.0
9 TraesCS5A01G327200 chr5B 83.095 1331 155 32 2443 3732 511310451 511309150 0.000000e+00 1147.0
10 TraesCS5A01G327200 chr5B 84.489 851 97 18 3730 4573 511308885 511308063 0.000000e+00 808.0
11 TraesCS5A01G327200 chr5B 89.429 473 44 3 4604 5070 511308067 511307595 5.910000e-165 592.0
12 TraesCS5A01G327200 chr5B 79.783 460 32 22 439 838 511311564 511311106 1.880000e-70 278.0
13 TraesCS5A01G327200 chr5B 87.850 214 19 2 15 222 511311779 511311567 1.910000e-60 244.0
14 TraesCS5A01G327200 chr4D 75.499 751 146 29 2898 3623 94375285 94376022 3.960000e-87 333.0
15 TraesCS5A01G327200 chr4D 79.801 302 46 12 2571 2861 94374651 94374948 9.000000e-49 206.0
16 TraesCS5A01G327200 chr7B 89.881 168 15 2 5089 5255 444875985 444876151 1.500000e-51 215.0
17 TraesCS5A01G327200 chr4B 79.522 293 45 13 2571 2861 133589755 133590034 1.950000e-45 195.0
18 TraesCS5A01G327200 chr3D 93.600 125 7 1 235 359 415663103 415662980 1.170000e-42 185.0
19 TraesCS5A01G327200 chr3D 91.603 131 10 1 235 365 545917511 545917382 5.450000e-41 180.0
20 TraesCS5A01G327200 chr3D 92.126 127 9 1 233 359 123309701 123309826 1.960000e-40 178.0
21 TraesCS5A01G327200 chr3D 92.308 78 5 1 353 429 250925916 250925993 7.260000e-20 110.0
22 TraesCS5A01G327200 chr6D 91.667 132 9 2 235 365 308569958 308569828 1.520000e-41 182.0
23 TraesCS5A01G327200 chr6D 89.655 87 8 1 353 438 283390039 283390125 7.260000e-20 110.0
24 TraesCS5A01G327200 chr3A 92.800 125 9 0 235 359 659016681 659016557 1.520000e-41 182.0
25 TraesCS5A01G327200 chr2D 92.857 126 8 1 234 359 88291340 88291464 1.520000e-41 182.0
26 TraesCS5A01G327200 chr4A 92.800 125 8 1 235 359 601146816 601146693 5.450000e-41 180.0
27 TraesCS5A01G327200 chr4A 85.393 89 7 3 2653 2740 574784937 574785020 3.400000e-13 87.9
28 TraesCS5A01G327200 chr4A 100.000 33 0 0 2590 2622 574784899 574784931 2.060000e-05 62.1
29 TraesCS5A01G327200 chr2A 92.800 125 8 1 235 359 391867027 391867150 5.450000e-41 180.0
30 TraesCS5A01G327200 chr3B 92.126 127 8 2 234 359 230937464 230937339 1.960000e-40 178.0
31 TraesCS5A01G327200 chr6B 92.683 82 5 1 358 438 367900312 367900231 4.340000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G327200 chr5A 536983557 536990401 6844 True 5985.000000 8320 100.0000 1 6845 2 chr5A.!!$R2 6844
1 TraesCS5A01G327200 chr5D 423501580 423507813 6233 True 2304.000000 6959 93.3215 17 6845 4 chr5D.!!$R1 6828
2 TraesCS5A01G327200 chr5B 511306152 511311779 5627 True 755.333333 1463 85.0485 15 6656 6 chr5B.!!$R1 6641
3 TraesCS5A01G327200 chr4D 94374651 94376022 1371 False 269.500000 333 77.6500 2571 3623 2 chr4D.!!$F1 1052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 341 0.038310 GCTTGCTTAGGGGGTCAAGT 59.962 55.000 0.00 0.00 38.44 3.16 F
1454 1564 0.249489 GGCAGTAGGTCCGTGCATAG 60.249 60.000 13.81 0.00 39.05 2.23 F
1860 2018 0.175760 GCGCTGGAGTACTTCATCCA 59.824 55.000 3.76 2.71 43.34 3.41 F
2722 2881 1.937278 TGAACTTTAACCGCACGACA 58.063 45.000 0.00 0.00 0.00 4.35 F
3421 3922 2.244695 ACGGTGTGTATCTGGAAGTCA 58.755 47.619 0.00 0.00 33.76 3.41 F
4229 5018 0.688749 GAGGCTGGCCATGGGAAATT 60.689 55.000 15.13 0.00 38.92 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 1963 0.394352 ATGAATTCCGTCCCTGGCAC 60.394 55.000 2.27 0.0 0.0 5.01 R
3207 3707 1.260297 TGCAAACTGTCACATCGAACG 59.740 47.619 0.00 0.0 0.0 3.95 R
3599 4102 1.508632 TCGTTTACTGCAGCTTCACC 58.491 50.000 15.27 0.0 0.0 4.02 R
3704 4207 2.753452 TCCTTACCACATCGTCAGAGTC 59.247 50.000 0.00 0.0 0.0 3.36 R
5187 6017 0.821517 ATACACGCCTTCATCGGTCA 59.178 50.000 0.00 0.0 0.0 4.02 R
5908 6744 1.290324 CGATATCCCTCCCAGTGCG 59.710 63.158 0.00 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.750098 CGGAAAAGCTTTTACTCTCACTCA 59.250 41.667 27.41 0.00 0.00 3.41
227 235 7.611213 TTTTTAGAAAAGGAGGATCGATCAC 57.389 36.000 25.93 18.10 34.37 3.06
228 236 3.828875 AGAAAAGGAGGATCGATCACC 57.171 47.619 25.93 24.89 34.37 4.02
229 237 2.436173 AGAAAAGGAGGATCGATCACCC 59.564 50.000 25.93 23.19 34.37 4.61
230 238 2.182516 AAAGGAGGATCGATCACCCT 57.817 50.000 25.93 24.81 34.37 4.34
231 239 1.710816 AAGGAGGATCGATCACCCTC 58.289 55.000 27.42 23.42 44.32 4.30
232 240 0.558220 AGGAGGATCGATCACCCTCA 59.442 55.000 25.93 0.00 46.28 3.86
233 241 1.148867 AGGAGGATCGATCACCCTCAT 59.851 52.381 25.93 18.41 46.28 2.90
234 242 1.974236 GGAGGATCGATCACCCTCATT 59.026 52.381 25.93 1.81 46.28 2.57
235 243 2.289320 GGAGGATCGATCACCCTCATTG 60.289 54.545 25.93 0.00 46.28 2.82
236 244 2.366916 GAGGATCGATCACCCTCATTGT 59.633 50.000 25.93 0.00 44.42 2.71
237 245 2.774234 AGGATCGATCACCCTCATTGTT 59.226 45.455 25.93 0.00 0.00 2.83
238 246 3.967326 AGGATCGATCACCCTCATTGTTA 59.033 43.478 25.93 0.00 0.00 2.41
239 247 4.039730 AGGATCGATCACCCTCATTGTTAG 59.960 45.833 25.93 0.00 0.00 2.34
240 248 4.039245 GGATCGATCACCCTCATTGTTAGA 59.961 45.833 25.93 0.00 0.00 2.10
241 249 4.655762 TCGATCACCCTCATTGTTAGAG 57.344 45.455 0.00 0.00 0.00 2.43
242 250 4.023980 TCGATCACCCTCATTGTTAGAGT 58.976 43.478 0.00 0.00 0.00 3.24
243 251 5.198207 TCGATCACCCTCATTGTTAGAGTA 58.802 41.667 0.00 0.00 0.00 2.59
244 252 5.833667 TCGATCACCCTCATTGTTAGAGTAT 59.166 40.000 0.00 0.00 0.00 2.12
245 253 5.923114 CGATCACCCTCATTGTTAGAGTATG 59.077 44.000 0.00 0.00 0.00 2.39
246 254 6.461648 CGATCACCCTCATTGTTAGAGTATGT 60.462 42.308 0.00 0.00 0.00 2.29
247 255 7.255486 CGATCACCCTCATTGTTAGAGTATGTA 60.255 40.741 0.00 0.00 0.00 2.29
248 256 7.727578 TCACCCTCATTGTTAGAGTATGTAA 57.272 36.000 0.00 0.00 0.00 2.41
249 257 8.319057 TCACCCTCATTGTTAGAGTATGTAAT 57.681 34.615 0.00 0.00 0.00 1.89
250 258 8.204160 TCACCCTCATTGTTAGAGTATGTAATG 58.796 37.037 0.00 0.00 0.00 1.90
251 259 7.442364 CACCCTCATTGTTAGAGTATGTAATGG 59.558 40.741 0.00 0.00 0.00 3.16
252 260 6.936900 CCCTCATTGTTAGAGTATGTAATGGG 59.063 42.308 0.00 0.00 0.00 4.00
253 261 6.428159 CCTCATTGTTAGAGTATGTAATGGGC 59.572 42.308 0.00 0.00 0.00 5.36
254 262 6.296026 TCATTGTTAGAGTATGTAATGGGCC 58.704 40.000 0.00 0.00 0.00 5.80
255 263 5.968676 TTGTTAGAGTATGTAATGGGCCT 57.031 39.130 4.53 0.00 0.00 5.19
256 264 7.291416 TCATTGTTAGAGTATGTAATGGGCCTA 59.709 37.037 4.53 0.00 0.00 3.93
257 265 7.440505 TTGTTAGAGTATGTAATGGGCCTAA 57.559 36.000 4.53 0.00 0.00 2.69
258 266 7.626999 TGTTAGAGTATGTAATGGGCCTAAT 57.373 36.000 4.53 0.00 0.00 1.73
259 267 7.450074 TGTTAGAGTATGTAATGGGCCTAATG 58.550 38.462 4.53 0.00 0.00 1.90
260 268 5.505181 AGAGTATGTAATGGGCCTAATGG 57.495 43.478 4.53 0.00 0.00 3.16
270 278 3.530067 CCTAATGGCCTTGGCTGC 58.470 61.111 11.71 0.00 0.00 5.25
276 284 4.506255 GGCCTTGGCTGCCGGTAT 62.506 66.667 14.98 0.00 39.48 2.73
277 285 2.508928 GCCTTGGCTGCCGGTATA 59.491 61.111 14.98 0.00 0.00 1.47
278 286 1.598130 GCCTTGGCTGCCGGTATAG 60.598 63.158 14.98 5.96 0.00 1.31
279 287 1.598130 CCTTGGCTGCCGGTATAGC 60.598 63.158 14.98 16.07 39.17 2.97
283 291 3.925090 GCTGCCGGTATAGCCCGT 61.925 66.667 14.16 0.00 46.66 5.28
284 292 2.819550 CTGCCGGTATAGCCCGTT 59.180 61.111 1.90 0.00 46.66 4.44
285 293 2.043625 CTGCCGGTATAGCCCGTTA 58.956 57.895 1.90 0.00 46.66 3.18
286 294 0.038526 CTGCCGGTATAGCCCGTTAG 60.039 60.000 1.90 0.00 46.66 2.34
287 295 0.756442 TGCCGGTATAGCCCGTTAGT 60.756 55.000 1.90 0.00 46.66 2.24
288 296 0.038801 GCCGGTATAGCCCGTTAGTC 60.039 60.000 1.90 0.00 46.66 2.59
289 297 1.613836 CCGGTATAGCCCGTTAGTCT 58.386 55.000 0.00 0.00 46.66 3.24
290 298 1.959282 CCGGTATAGCCCGTTAGTCTT 59.041 52.381 0.00 0.00 46.66 3.01
291 299 3.149196 CCGGTATAGCCCGTTAGTCTTA 58.851 50.000 0.00 0.00 46.66 2.10
292 300 3.190118 CCGGTATAGCCCGTTAGTCTTAG 59.810 52.174 0.00 0.00 46.66 2.18
293 301 3.190118 CGGTATAGCCCGTTAGTCTTAGG 59.810 52.174 0.00 0.00 43.07 2.69
294 302 4.401925 GGTATAGCCCGTTAGTCTTAGGA 58.598 47.826 0.00 0.00 0.00 2.94
295 303 5.015515 GGTATAGCCCGTTAGTCTTAGGAT 58.984 45.833 0.00 0.00 0.00 3.24
296 304 5.479724 GGTATAGCCCGTTAGTCTTAGGATT 59.520 44.000 0.00 0.00 0.00 3.01
297 305 6.660949 GGTATAGCCCGTTAGTCTTAGGATTA 59.339 42.308 0.00 0.00 0.00 1.75
298 306 7.177392 GGTATAGCCCGTTAGTCTTAGGATTAA 59.823 40.741 0.00 0.00 0.00 1.40
299 307 7.793948 ATAGCCCGTTAGTCTTAGGATTAAT 57.206 36.000 0.00 0.00 0.00 1.40
300 308 6.496144 AGCCCGTTAGTCTTAGGATTAATT 57.504 37.500 0.00 0.00 0.00 1.40
301 309 7.607615 AGCCCGTTAGTCTTAGGATTAATTA 57.392 36.000 0.00 0.00 0.00 1.40
302 310 7.668492 AGCCCGTTAGTCTTAGGATTAATTAG 58.332 38.462 0.00 0.00 0.00 1.73
303 311 7.508296 AGCCCGTTAGTCTTAGGATTAATTAGA 59.492 37.037 0.00 0.00 0.00 2.10
304 312 8.312564 GCCCGTTAGTCTTAGGATTAATTAGAT 58.687 37.037 0.00 0.00 0.00 1.98
324 332 8.988064 TTAGATATAAGAATCGCTTGCTTAGG 57.012 34.615 0.00 0.00 37.42 2.69
325 333 6.402222 AGATATAAGAATCGCTTGCTTAGGG 58.598 40.000 0.00 0.00 37.42 3.53
326 334 2.044123 AAGAATCGCTTGCTTAGGGG 57.956 50.000 4.21 0.00 37.41 4.79
327 335 0.181350 AGAATCGCTTGCTTAGGGGG 59.819 55.000 4.21 0.00 37.41 5.40
328 336 0.107165 GAATCGCTTGCTTAGGGGGT 60.107 55.000 4.21 0.00 37.41 4.95
329 337 0.107165 AATCGCTTGCTTAGGGGGTC 60.107 55.000 4.21 0.00 37.41 4.46
330 338 1.271840 ATCGCTTGCTTAGGGGGTCA 61.272 55.000 4.21 0.00 37.41 4.02
331 339 1.002624 CGCTTGCTTAGGGGGTCAA 60.003 57.895 0.00 0.00 33.37 3.18
332 340 1.026718 CGCTTGCTTAGGGGGTCAAG 61.027 60.000 0.00 0.00 39.00 3.02
333 341 0.038310 GCTTGCTTAGGGGGTCAAGT 59.962 55.000 0.00 0.00 38.44 3.16
334 342 1.280998 GCTTGCTTAGGGGGTCAAGTA 59.719 52.381 0.00 0.00 38.44 2.24
335 343 2.290705 GCTTGCTTAGGGGGTCAAGTAA 60.291 50.000 0.00 0.00 38.44 2.24
336 344 3.610911 CTTGCTTAGGGGGTCAAGTAAG 58.389 50.000 0.00 0.00 37.87 2.34
337 345 1.280998 TGCTTAGGGGGTCAAGTAAGC 59.719 52.381 6.08 6.08 45.04 3.09
338 346 1.408405 GCTTAGGGGGTCAAGTAAGCC 60.408 57.143 2.19 0.00 40.93 4.35
339 347 2.197465 CTTAGGGGGTCAAGTAAGCCT 58.803 52.381 0.00 0.00 37.00 4.58
340 348 2.354261 TAGGGGGTCAAGTAAGCCTT 57.646 50.000 0.00 0.00 37.00 4.35
341 349 2.354261 AGGGGGTCAAGTAAGCCTTA 57.646 50.000 0.00 0.00 37.00 2.69
342 350 1.914108 AGGGGGTCAAGTAAGCCTTAC 59.086 52.381 6.50 6.50 37.00 2.34
353 361 5.562298 AGTAAGCCTTACTTGGAAGTCAA 57.438 39.130 11.36 0.00 43.70 3.18
365 373 6.502136 CTTGGAAGTCAAGTAAATCCCTTC 57.498 41.667 0.00 0.00 45.81 3.46
366 374 4.918588 TGGAAGTCAAGTAAATCCCTTCC 58.081 43.478 8.86 8.86 45.21 3.46
367 375 4.918588 GGAAGTCAAGTAAATCCCTTCCA 58.081 43.478 10.52 0.00 44.65 3.53
368 376 5.510430 GGAAGTCAAGTAAATCCCTTCCAT 58.490 41.667 10.52 0.00 44.65 3.41
369 377 5.590663 GGAAGTCAAGTAAATCCCTTCCATC 59.409 44.000 10.52 0.00 44.65 3.51
370 378 6.394345 AAGTCAAGTAAATCCCTTCCATCT 57.606 37.500 0.00 0.00 0.00 2.90
371 379 6.394345 AGTCAAGTAAATCCCTTCCATCTT 57.606 37.500 0.00 0.00 0.00 2.40
372 380 7.510675 AGTCAAGTAAATCCCTTCCATCTTA 57.489 36.000 0.00 0.00 0.00 2.10
373 381 7.339482 AGTCAAGTAAATCCCTTCCATCTTAC 58.661 38.462 0.00 0.00 0.00 2.34
374 382 6.542735 GTCAAGTAAATCCCTTCCATCTTACC 59.457 42.308 0.00 0.00 0.00 2.85
375 383 5.648330 AGTAAATCCCTTCCATCTTACCC 57.352 43.478 0.00 0.00 0.00 3.69
376 384 3.577805 AAATCCCTTCCATCTTACCCG 57.422 47.619 0.00 0.00 0.00 5.28
377 385 1.435256 ATCCCTTCCATCTTACCCGG 58.565 55.000 0.00 0.00 0.00 5.73
378 386 1.148498 CCCTTCCATCTTACCCGGC 59.852 63.158 0.00 0.00 0.00 6.13
379 387 1.148498 CCTTCCATCTTACCCGGCC 59.852 63.158 0.00 0.00 0.00 6.13
380 388 1.227556 CTTCCATCTTACCCGGCCG 60.228 63.158 21.04 21.04 0.00 6.13
381 389 1.968050 CTTCCATCTTACCCGGCCGT 61.968 60.000 26.12 9.29 0.00 5.68
382 390 2.203015 CCATCTTACCCGGCCGTG 60.203 66.667 26.12 16.88 0.00 4.94
383 391 2.203015 CATCTTACCCGGCCGTGG 60.203 66.667 26.12 25.76 0.00 4.94
384 392 2.364579 ATCTTACCCGGCCGTGGA 60.365 61.111 31.47 14.58 0.00 4.02
385 393 2.728435 ATCTTACCCGGCCGTGGAC 61.728 63.158 31.47 0.00 0.00 4.02
386 394 3.697747 CTTACCCGGCCGTGGACA 61.698 66.667 31.47 18.93 0.00 4.02
387 395 3.240011 TTACCCGGCCGTGGACAA 61.240 61.111 31.47 22.43 0.00 3.18
388 396 2.734948 CTTACCCGGCCGTGGACAAA 62.735 60.000 31.47 21.53 0.00 2.83
389 397 2.335092 TTACCCGGCCGTGGACAAAA 62.335 55.000 31.47 18.89 0.00 2.44
390 398 2.335092 TACCCGGCCGTGGACAAAAA 62.335 55.000 31.47 11.87 0.00 1.94
417 425 4.247380 CGGCCCTCTCATGCCCTC 62.247 72.222 0.00 0.00 45.07 4.30
418 426 3.883549 GGCCCTCTCATGCCCTCC 61.884 72.222 0.00 0.00 41.97 4.30
419 427 2.771762 GCCCTCTCATGCCCTCCT 60.772 66.667 0.00 0.00 0.00 3.69
420 428 2.381941 GCCCTCTCATGCCCTCCTT 61.382 63.158 0.00 0.00 0.00 3.36
421 429 1.835693 CCCTCTCATGCCCTCCTTC 59.164 63.158 0.00 0.00 0.00 3.46
422 430 0.693767 CCCTCTCATGCCCTCCTTCT 60.694 60.000 0.00 0.00 0.00 2.85
423 431 1.413662 CCCTCTCATGCCCTCCTTCTA 60.414 57.143 0.00 0.00 0.00 2.10
424 432 1.969923 CCTCTCATGCCCTCCTTCTAG 59.030 57.143 0.00 0.00 0.00 2.43
425 433 1.344114 CTCTCATGCCCTCCTTCTAGC 59.656 57.143 0.00 0.00 0.00 3.42
426 434 1.126488 CTCATGCCCTCCTTCTAGCA 58.874 55.000 0.00 0.00 40.00 3.49
427 435 1.070445 CTCATGCCCTCCTTCTAGCAG 59.930 57.143 0.00 0.00 38.89 4.24
428 436 0.534652 CATGCCCTCCTTCTAGCAGC 60.535 60.000 0.00 0.00 38.89 5.25
429 437 2.037620 ATGCCCTCCTTCTAGCAGCG 62.038 60.000 0.00 0.00 38.89 5.18
430 438 2.107953 CCCTCCTTCTAGCAGCGC 59.892 66.667 0.00 0.00 0.00 5.92
431 439 2.107953 CCTCCTTCTAGCAGCGCC 59.892 66.667 2.29 0.00 0.00 6.53
432 440 2.279120 CTCCTTCTAGCAGCGCCG 60.279 66.667 2.29 0.00 0.00 6.46
433 441 3.068691 TCCTTCTAGCAGCGCCGT 61.069 61.111 2.29 0.00 0.00 5.68
434 442 1.725557 CTCCTTCTAGCAGCGCCGTA 61.726 60.000 2.29 0.00 0.00 4.02
435 443 1.141019 CCTTCTAGCAGCGCCGTAA 59.859 57.895 2.29 0.00 0.00 3.18
436 444 1.146358 CCTTCTAGCAGCGCCGTAAC 61.146 60.000 2.29 0.00 0.00 2.50
437 445 0.457853 CTTCTAGCAGCGCCGTAACA 60.458 55.000 2.29 0.00 0.00 2.41
458 466 1.212688 CCCATACACTCCATTGCAGGA 59.787 52.381 0.00 0.00 36.00 3.86
465 473 2.086869 ACTCCATTGCAGGAAACGATG 58.913 47.619 0.00 0.00 37.20 3.84
494 503 1.278637 GTCAACGGTGCGACCTTTG 59.721 57.895 14.34 14.34 45.65 2.77
530 557 5.119694 GTTGTTTCTCTCTCTTGTTCCAGT 58.880 41.667 0.00 0.00 0.00 4.00
535 562 6.821031 TTCTCTCTCTTGTTCCAGTAGTAC 57.179 41.667 0.00 0.00 0.00 2.73
541 568 4.275810 TCTTGTTCCAGTAGTACGCCTAT 58.724 43.478 0.00 0.00 0.00 2.57
562 602 7.450903 CCTATACCTCGGGATTTTTCAGTATT 58.549 38.462 0.00 0.00 0.00 1.89
577 617 8.880878 TTTTCAGTATTCCTAAAACAAAAGGC 57.119 30.769 0.00 0.00 32.55 4.35
582 633 9.103861 CAGTATTCCTAAAACAAAAGGCAAAAA 57.896 29.630 0.00 0.00 32.55 1.94
661 718 2.346803 TCATAGGAGCTTTCGTGCAAC 58.653 47.619 0.00 0.00 34.99 4.17
667 724 0.537143 AGCTTTCGTGCAACCATGGA 60.537 50.000 21.47 0.00 34.99 3.41
668 725 0.313672 GCTTTCGTGCAACCATGGAA 59.686 50.000 21.47 0.00 0.00 3.53
690 764 7.120873 TGGAACTATGCGGATTATCTAGTACTC 59.879 40.741 0.00 0.00 0.00 2.59
740 825 1.140312 TTGACTTGACCTGGCTTCCT 58.860 50.000 0.00 0.00 0.00 3.36
774 861 3.828875 AGTGTATCCTCTGCCTTTAGC 57.171 47.619 0.00 0.00 44.14 3.09
776 863 2.170607 GTGTATCCTCTGCCTTTAGCCA 59.829 50.000 0.00 0.00 42.71 4.75
785 879 1.312815 GCCTTTAGCCATAGCAGGTG 58.687 55.000 0.00 0.00 43.56 4.00
814 911 2.819608 TGGAAAGTCTTAAGCATGGTGC 59.180 45.455 0.00 0.00 45.46 5.01
912 1017 0.741221 CGACCTGCTCCCAGCTAAAC 60.741 60.000 0.00 0.00 42.97 2.01
932 1038 2.299867 ACATCCCAAGATTTGTTGGTGC 59.700 45.455 5.83 0.00 44.98 5.01
935 1041 2.109128 TCCCAAGATTTGTTGGTGCCTA 59.891 45.455 5.83 0.00 44.98 3.93
938 1044 2.821969 CAAGATTTGTTGGTGCCTAGCT 59.178 45.455 0.00 0.00 0.00 3.32
995 1101 6.674066 CCAAGATTCTACTGTACTAGCTAGC 58.326 44.000 20.91 6.62 0.00 3.42
1107 1216 1.152839 GGAGGACGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
1117 1226 3.511934 CGAGGAGGAGGAGAAAGAAGAAA 59.488 47.826 0.00 0.00 0.00 2.52
1128 1237 6.101881 AGGAGAAAGAAGAAAAGGAGGAAGAA 59.898 38.462 0.00 0.00 0.00 2.52
1129 1238 6.429692 GGAGAAAGAAGAAAAGGAGGAAGAAG 59.570 42.308 0.00 0.00 0.00 2.85
1136 1245 0.800239 AAGGAGGAAGAAGAGGGGGA 59.200 55.000 0.00 0.00 0.00 4.81
1152 1261 2.375509 GGGGGAAGAAGAAGAGGTTGAA 59.624 50.000 0.00 0.00 0.00 2.69
1161 1270 6.463360 AGAAGAAGAGGTTGAAGAAGATGAC 58.537 40.000 0.00 0.00 0.00 3.06
1170 1279 5.290643 GGTTGAAGAAGATGACGATGAAGAG 59.709 44.000 0.00 0.00 0.00 2.85
1171 1280 5.003692 TGAAGAAGATGACGATGAAGAGG 57.996 43.478 0.00 0.00 0.00 3.69
1172 1281 4.706962 TGAAGAAGATGACGATGAAGAGGA 59.293 41.667 0.00 0.00 0.00 3.71
1173 1282 5.362143 TGAAGAAGATGACGATGAAGAGGAT 59.638 40.000 0.00 0.00 0.00 3.24
1174 1283 5.199024 AGAAGATGACGATGAAGAGGATG 57.801 43.478 0.00 0.00 0.00 3.51
1175 1284 4.892345 AGAAGATGACGATGAAGAGGATGA 59.108 41.667 0.00 0.00 0.00 2.92
1176 1285 5.362143 AGAAGATGACGATGAAGAGGATGAA 59.638 40.000 0.00 0.00 0.00 2.57
1177 1286 5.199024 AGATGACGATGAAGAGGATGAAG 57.801 43.478 0.00 0.00 0.00 3.02
1178 1287 4.892345 AGATGACGATGAAGAGGATGAAGA 59.108 41.667 0.00 0.00 0.00 2.87
1179 1288 5.539574 AGATGACGATGAAGAGGATGAAGAT 59.460 40.000 0.00 0.00 0.00 2.40
1180 1289 4.941657 TGACGATGAAGAGGATGAAGATG 58.058 43.478 0.00 0.00 0.00 2.90
1181 1290 4.646492 TGACGATGAAGAGGATGAAGATGA 59.354 41.667 0.00 0.00 0.00 2.92
1182 1291 5.127682 TGACGATGAAGAGGATGAAGATGAA 59.872 40.000 0.00 0.00 0.00 2.57
1183 1292 5.599732 ACGATGAAGAGGATGAAGATGAAG 58.400 41.667 0.00 0.00 0.00 3.02
1184 1293 5.362143 ACGATGAAGAGGATGAAGATGAAGA 59.638 40.000 0.00 0.00 0.00 2.87
1268 1377 3.752665 TCAACAACGGGCTGGTAATAAA 58.247 40.909 0.00 0.00 0.00 1.40
1287 1397 2.386661 ACACCTCAACCATGACGATC 57.613 50.000 0.00 0.00 0.00 3.69
1288 1398 1.280982 CACCTCAACCATGACGATCG 58.719 55.000 14.88 14.88 0.00 3.69
1289 1399 0.460284 ACCTCAACCATGACGATCGC 60.460 55.000 16.60 8.83 0.00 4.58
1301 1411 1.723542 GACGATCGCCATGCAATCTAG 59.276 52.381 16.60 0.00 0.00 2.43
1316 1426 0.601558 TCTAGCCGGTGTCTGTTGAC 59.398 55.000 1.90 0.00 43.20 3.18
1333 1443 5.595885 TGTTGACTCTCTTGAACTCTTGAG 58.404 41.667 0.00 0.00 0.00 3.02
1357 1467 3.195396 TGGCCTTAATTTCACTGGCATTC 59.805 43.478 3.32 0.00 44.85 2.67
1397 1507 2.380084 TTTCGCTTACTTGGATCGCT 57.620 45.000 0.00 0.00 0.00 4.93
1408 1518 0.447406 TGGATCGCTTGTTTCGCATG 59.553 50.000 0.00 0.00 0.00 4.06
1449 1559 0.892755 TACTTGGCAGTAGGTCCGTG 59.107 55.000 0.00 0.00 34.06 4.94
1452 1562 1.836999 TTGGCAGTAGGTCCGTGCAT 61.837 55.000 13.81 0.00 39.05 3.96
1453 1563 0.973496 TGGCAGTAGGTCCGTGCATA 60.973 55.000 13.81 2.48 39.05 3.14
1454 1564 0.249489 GGCAGTAGGTCCGTGCATAG 60.249 60.000 13.81 0.00 39.05 2.23
1457 1567 2.543238 GCAGTAGGTCCGTGCATAGTAC 60.543 54.545 8.56 0.00 37.16 2.73
1461 1571 4.760715 AGTAGGTCCGTGCATAGTACTATG 59.239 45.833 30.59 30.59 44.28 2.23
1476 1586 8.893727 CATAGTACTATGTACATGGATCGATCA 58.106 37.037 27.86 13.02 38.42 2.92
1479 1589 6.018589 ACTATGTACATGGATCGATCACTG 57.981 41.667 25.93 22.15 0.00 3.66
1481 1591 3.295973 TGTACATGGATCGATCACTGGA 58.704 45.455 25.93 16.06 0.00 3.86
1482 1592 3.897505 TGTACATGGATCGATCACTGGAT 59.102 43.478 25.93 10.30 36.13 3.41
1486 1599 4.240888 CATGGATCGATCACTGGATACAC 58.759 47.826 25.93 5.95 46.17 2.90
1492 1605 5.337578 TCGATCACTGGATACACAAATGA 57.662 39.130 0.00 0.00 46.17 2.57
1556 1669 1.545582 CAAATTCCAACCGCAGATGGT 59.454 47.619 0.00 0.00 46.67 3.55
1667 1789 4.551702 TCATTTCATTCCCTCGACAAGA 57.448 40.909 0.00 0.00 0.00 3.02
1672 1794 5.677319 TTCATTCCCTCGACAAGATAACT 57.323 39.130 0.00 0.00 0.00 2.24
1787 1945 1.070041 CCCGAGATACGTACGAGCTTC 60.070 57.143 24.41 12.57 40.78 3.86
1805 1963 3.190118 GCTTCAGAATCCTGTTGTCAAGG 59.810 47.826 0.00 0.00 41.16 3.61
1860 2018 0.175760 GCGCTGGAGTACTTCATCCA 59.824 55.000 3.76 2.71 43.34 3.41
1876 2034 2.083167 TCCACGAACGGTTGAATACC 57.917 50.000 0.00 0.00 44.03 2.73
1913 2071 5.886960 AGACATCAAGGTTTGCACTTATC 57.113 39.130 0.00 0.00 0.00 1.75
1921 2079 8.001881 TCAAGGTTTGCACTTATCTTTTAACA 57.998 30.769 0.00 0.00 0.00 2.41
1922 2080 8.134895 TCAAGGTTTGCACTTATCTTTTAACAG 58.865 33.333 0.00 0.00 0.00 3.16
1926 2084 6.398234 TTGCACTTATCTTTTAACAGGCAA 57.602 33.333 0.00 0.00 35.44 4.52
1927 2085 6.398234 TGCACTTATCTTTTAACAGGCAAA 57.602 33.333 0.00 0.00 0.00 3.68
1928 2086 6.446318 TGCACTTATCTTTTAACAGGCAAAG 58.554 36.000 0.00 0.00 0.00 2.77
1929 2087 6.040391 TGCACTTATCTTTTAACAGGCAAAGT 59.960 34.615 0.00 0.00 32.67 2.66
1930 2088 6.363357 GCACTTATCTTTTAACAGGCAAAGTG 59.637 38.462 17.81 17.81 42.47 3.16
1931 2089 6.863126 CACTTATCTTTTAACAGGCAAAGTGG 59.137 38.462 16.02 5.86 38.27 4.00
1959 2117 5.479375 AGCAAATGGAGTTCATGTTCATCTT 59.521 36.000 0.00 0.00 35.99 2.40
1971 2129 7.377766 TCATGTTCATCTTAACTGTTTAGCC 57.622 36.000 0.00 0.00 0.00 3.93
1972 2130 7.168219 TCATGTTCATCTTAACTGTTTAGCCT 58.832 34.615 0.00 0.00 0.00 4.58
1973 2131 6.801539 TGTTCATCTTAACTGTTTAGCCTG 57.198 37.500 0.00 1.05 0.00 4.85
1974 2132 5.181245 TGTTCATCTTAACTGTTTAGCCTGC 59.819 40.000 0.00 0.00 0.00 4.85
1975 2133 4.905429 TCATCTTAACTGTTTAGCCTGCA 58.095 39.130 0.00 0.00 0.00 4.41
2430 2588 2.287644 CACACTGAAACTGTGATTGCGA 59.712 45.455 13.80 0.00 41.43 5.10
2513 2671 2.339769 GTATCTTAGGGGCTGTGGGAT 58.660 52.381 0.00 0.00 0.00 3.85
2722 2881 1.937278 TGAACTTTAACCGCACGACA 58.063 45.000 0.00 0.00 0.00 4.35
3207 3707 4.808364 GCTGTGATTGTTCCTCTGATCTAC 59.192 45.833 0.00 0.00 0.00 2.59
3332 3832 7.382488 GGAGAATTTCTGCCTTTTTACTTTCAC 59.618 37.037 3.03 0.00 0.00 3.18
3334 3834 5.923733 TTTCTGCCTTTTTACTTTCACCA 57.076 34.783 0.00 0.00 0.00 4.17
3390 3891 3.695830 TGCTTCTACGGGAAACAGATT 57.304 42.857 0.00 0.00 33.07 2.40
3421 3922 2.244695 ACGGTGTGTATCTGGAAGTCA 58.755 47.619 0.00 0.00 33.76 3.41
3599 4102 5.349817 CAGAAGTTACTGCACAAGATACAGG 59.650 44.000 0.00 0.00 35.70 4.00
3667 4170 6.910995 AGAGAAGAAAACATCATTTGCTCAG 58.089 36.000 0.00 0.00 0.00 3.35
3704 4207 5.337169 CCTGTAGAGACTTCCCTTGAAAGAG 60.337 48.000 0.00 0.00 0.00 2.85
3706 4209 4.882842 AGAGACTTCCCTTGAAAGAGAC 57.117 45.455 0.00 0.00 0.00 3.36
3785 4557 3.851976 TCTTCTAGTCAGGAAGAACGC 57.148 47.619 4.02 0.00 43.90 4.84
3855 4627 7.118723 TGCATCCCTAACAAGTCTAATGAATT 58.881 34.615 0.00 0.00 0.00 2.17
3929 4702 6.924913 TGATTCCCTATTATCAGGTCAGAG 57.075 41.667 0.00 0.00 33.44 3.35
3982 4755 8.488764 GTGAGCGATATTTTCTGTAATAAGGAC 58.511 37.037 0.00 0.00 0.00 3.85
4214 5003 1.674962 GCAAATGGAGTCTCATGAGGC 59.325 52.381 19.90 19.90 0.00 4.70
4216 5005 2.943690 CAAATGGAGTCTCATGAGGCTG 59.056 50.000 33.68 15.48 44.60 4.85
4217 5006 1.129917 ATGGAGTCTCATGAGGCTGG 58.870 55.000 33.68 3.27 44.60 4.85
4219 5008 1.145819 GAGTCTCATGAGGCTGGCC 59.854 63.158 33.68 16.13 44.60 5.36
4220 5009 1.614525 AGTCTCATGAGGCTGGCCA 60.615 57.895 28.62 4.71 42.67 5.36
4221 5010 0.987081 AGTCTCATGAGGCTGGCCAT 60.987 55.000 28.62 3.66 42.67 4.40
4222 5011 0.818445 GTCTCATGAGGCTGGCCATG 60.818 60.000 20.20 19.44 40.97 3.66
4223 5012 1.528542 CTCATGAGGCTGGCCATGG 60.529 63.158 22.67 7.63 40.26 3.66
4224 5013 2.520982 CATGAGGCTGGCCATGGG 60.521 66.667 15.13 0.00 37.19 4.00
4225 5014 2.697263 ATGAGGCTGGCCATGGGA 60.697 61.111 15.13 0.00 38.92 4.37
4226 5015 2.318966 ATGAGGCTGGCCATGGGAA 61.319 57.895 15.13 0.00 38.92 3.97
4227 5016 1.877672 ATGAGGCTGGCCATGGGAAA 61.878 55.000 15.13 0.00 38.92 3.13
4228 5017 1.075748 GAGGCTGGCCATGGGAAAT 60.076 57.895 15.13 0.00 38.92 2.17
4229 5018 0.688749 GAGGCTGGCCATGGGAAATT 60.689 55.000 15.13 0.00 38.92 1.82
4571 5360 6.640907 GCAAGAAAAACGTTTCCATTCTATGT 59.359 34.615 20.91 8.23 43.65 2.29
4572 5361 7.148967 GCAAGAAAAACGTTTCCATTCTATGTC 60.149 37.037 20.91 14.38 43.65 3.06
4573 5362 7.504924 AGAAAAACGTTTCCATTCTATGTCA 57.495 32.000 19.78 0.00 43.65 3.58
4574 5363 7.936584 AGAAAAACGTTTCCATTCTATGTCAA 58.063 30.769 19.78 0.00 43.65 3.18
4575 5364 8.576442 AGAAAAACGTTTCCATTCTATGTCAAT 58.424 29.630 19.78 0.35 43.65 2.57
4576 5365 9.834628 GAAAAACGTTTCCATTCTATGTCAATA 57.165 29.630 15.01 0.00 37.72 1.90
4594 5383 7.169591 TGTCAATATATTTTATGGTACCCCCG 58.830 38.462 10.07 0.00 35.15 5.73
4595 5384 6.094464 GTCAATATATTTTATGGTACCCCCGC 59.906 42.308 10.07 0.00 35.15 6.13
4596 5385 5.782677 ATATATTTTATGGTACCCCCGCA 57.217 39.130 10.07 0.00 35.15 5.69
4597 5386 2.830651 ATTTTATGGTACCCCCGCAA 57.169 45.000 10.07 0.00 35.15 4.85
4598 5387 2.599408 TTTTATGGTACCCCCGCAAA 57.401 45.000 10.07 0.00 35.15 3.68
4599 5388 2.599408 TTTATGGTACCCCCGCAAAA 57.401 45.000 10.07 0.00 35.15 2.44
4600 5389 2.599408 TTATGGTACCCCCGCAAAAA 57.401 45.000 10.07 0.00 35.15 1.94
4714 5538 8.418662 CAATTCAACATATCTTTCACCATGGAT 58.581 33.333 21.47 2.20 0.00 3.41
5077 5907 6.179906 AGTATTGATGTGCTTAGTATGGCT 57.820 37.500 0.00 0.00 0.00 4.75
5078 5908 7.303182 AGTATTGATGTGCTTAGTATGGCTA 57.697 36.000 0.00 0.00 0.00 3.93
5079 5909 7.382110 AGTATTGATGTGCTTAGTATGGCTAG 58.618 38.462 0.00 0.00 0.00 3.42
5080 5910 4.607293 TGATGTGCTTAGTATGGCTAGG 57.393 45.455 0.00 0.00 0.00 3.02
5081 5911 3.967326 TGATGTGCTTAGTATGGCTAGGT 59.033 43.478 0.00 0.00 0.00 3.08
5082 5912 4.408921 TGATGTGCTTAGTATGGCTAGGTT 59.591 41.667 0.00 0.00 0.00 3.50
5112 5942 2.267642 TCCCGCTTGGAATCGGTG 59.732 61.111 1.36 0.00 41.40 4.94
5181 6011 5.697633 CCATTTGTGATTTCCACCTGAAAAG 59.302 40.000 0.00 0.00 45.67 2.27
5187 6017 8.421249 TGTGATTTCCACCTGAAAAGATAAAT 57.579 30.769 0.00 0.00 45.67 1.40
5189 6019 8.522830 GTGATTTCCACCTGAAAAGATAAATGA 58.477 33.333 0.00 0.00 45.67 2.57
5229 6059 4.359971 TTTTACAGACGTATAGCGCTCA 57.640 40.909 16.34 0.00 46.11 4.26
5235 6065 2.683867 AGACGTATAGCGCTCAGAAACT 59.316 45.455 16.34 5.65 46.11 2.66
5249 6079 5.551305 TCAGAAACTGAGAGTCCAATCAA 57.449 39.130 0.00 0.00 35.39 2.57
5251 6081 4.694509 CAGAAACTGAGAGTCCAATCAAGG 59.305 45.833 0.00 0.00 32.44 3.61
5284 6115 5.065346 GCTAGGTTATGCAAAAAGGACTCTC 59.935 44.000 0.00 0.00 0.00 3.20
5505 6340 9.979578 ACTGTTGCATAAATCATAAGTCAAAAA 57.020 25.926 0.00 0.00 0.00 1.94
5533 6368 6.149807 ACCGGTATTTACCTTGTTAACACATG 59.850 38.462 4.49 2.27 44.25 3.21
5637 6472 2.684754 GCATTTGCGGCAACAATTTT 57.315 40.000 16.15 0.00 0.00 1.82
5669 6504 5.385617 CACAGAAAAAGCTTTGGATAGACG 58.614 41.667 13.54 0.00 0.00 4.18
5844 6680 2.157834 ATAAGGTTCAACACGCGTGA 57.842 45.000 42.94 20.79 0.00 4.35
5881 6717 4.883083 TCCAGACATGACAGTGTAAGTTC 58.117 43.478 0.00 0.00 31.16 3.01
5895 6731 6.696148 CAGTGTAAGTTCGTTTACTCTTGAGT 59.304 38.462 8.41 8.41 36.03 3.41
5912 6748 5.291858 TCTTGAGTTGATCATATTCACGCAC 59.708 40.000 0.00 0.00 37.89 5.34
5926 6762 1.290324 CGCACTGGGAGGGATATCG 59.710 63.158 0.00 0.00 0.00 2.92
5927 6763 1.464376 CGCACTGGGAGGGATATCGT 61.464 60.000 0.00 0.00 0.00 3.73
6130 6984 6.667848 TCTGAAACTTATGTATCCACTCCTGA 59.332 38.462 0.00 0.00 0.00 3.86
6131 6985 7.345653 TCTGAAACTTATGTATCCACTCCTGAT 59.654 37.037 0.00 0.00 0.00 2.90
6147 7001 5.069781 ACTCCTGATGACTATAACTGAAGCC 59.930 44.000 0.00 0.00 0.00 4.35
6198 7052 4.740822 CCGGGTCCAAGGCCAAGG 62.741 72.222 5.01 6.28 0.00 3.61
6338 7201 1.435925 CTGCTACCGCCGATACACA 59.564 57.895 0.00 0.00 34.43 3.72
6382 7245 2.034221 GAGGTTCCCAGGGTGTGC 59.966 66.667 5.01 0.00 0.00 4.57
6384 7247 2.197324 GGTTCCCAGGGTGTGCAA 59.803 61.111 5.01 0.00 0.00 4.08
6658 7557 0.395686 CCCATGAGGTCATCGCTCAT 59.604 55.000 0.00 0.00 38.23 2.90
6703 7602 6.392625 TCGTAAGATATTCTCCTTCACCTG 57.607 41.667 0.00 0.00 45.01 4.00
6704 7603 6.127101 TCGTAAGATATTCTCCTTCACCTGA 58.873 40.000 0.00 0.00 45.01 3.86
6705 7604 6.039493 TCGTAAGATATTCTCCTTCACCTGAC 59.961 42.308 0.00 0.00 45.01 3.51
6706 7605 6.039941 CGTAAGATATTCTCCTTCACCTGACT 59.960 42.308 0.00 0.00 43.02 3.41
6707 7606 6.882768 AAGATATTCTCCTTCACCTGACTT 57.117 37.500 0.00 0.00 0.00 3.01
6708 7607 7.979786 AAGATATTCTCCTTCACCTGACTTA 57.020 36.000 0.00 0.00 0.00 2.24
6709 7608 7.595819 AGATATTCTCCTTCACCTGACTTAG 57.404 40.000 0.00 0.00 0.00 2.18
6710 7609 7.358263 AGATATTCTCCTTCACCTGACTTAGA 58.642 38.462 0.00 0.00 0.00 2.10
6711 7610 5.930837 ATTCTCCTTCACCTGACTTAGAG 57.069 43.478 0.00 0.00 0.00 2.43
6712 7611 4.659529 TCTCCTTCACCTGACTTAGAGA 57.340 45.455 0.00 0.00 0.00 3.10
6713 7612 5.199982 TCTCCTTCACCTGACTTAGAGAT 57.800 43.478 0.00 0.00 0.00 2.75
6714 7613 4.952957 TCTCCTTCACCTGACTTAGAGATG 59.047 45.833 0.00 0.00 0.00 2.90
6715 7614 4.935578 TCCTTCACCTGACTTAGAGATGA 58.064 43.478 0.00 0.00 0.00 2.92
6716 7615 4.707448 TCCTTCACCTGACTTAGAGATGAC 59.293 45.833 0.00 0.00 0.00 3.06
6717 7616 4.464244 CCTTCACCTGACTTAGAGATGACA 59.536 45.833 0.00 0.00 0.00 3.58
6718 7617 5.394005 CCTTCACCTGACTTAGAGATGACAG 60.394 48.000 0.00 0.00 0.00 3.51
6719 7618 4.667573 TCACCTGACTTAGAGATGACAGT 58.332 43.478 0.00 0.00 0.00 3.55
6720 7619 5.816682 TCACCTGACTTAGAGATGACAGTA 58.183 41.667 0.00 0.00 0.00 2.74
6721 7620 6.246163 TCACCTGACTTAGAGATGACAGTAA 58.754 40.000 0.00 0.00 0.00 2.24
6722 7621 6.719829 TCACCTGACTTAGAGATGACAGTAAA 59.280 38.462 0.00 0.00 0.00 2.01
6723 7622 7.232737 TCACCTGACTTAGAGATGACAGTAAAA 59.767 37.037 0.00 0.00 0.00 1.52
6724 7623 7.872993 CACCTGACTTAGAGATGACAGTAAAAA 59.127 37.037 0.00 0.00 0.00 1.94
6725 7624 8.598041 ACCTGACTTAGAGATGACAGTAAAAAT 58.402 33.333 0.00 0.00 0.00 1.82
6781 7680 3.314080 TCAACGAAAAAGCGAGACCATTT 59.686 39.130 0.00 0.00 34.83 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.065789 AGAGTAAAAGCTTTTCCGAGTGG 58.934 43.478 27.03 0.00 0.00 4.00
1 2 4.750098 TGAGAGTAAAAGCTTTTCCGAGTG 59.250 41.667 27.03 0.00 0.00 3.51
2 3 4.750598 GTGAGAGTAAAAGCTTTTCCGAGT 59.249 41.667 27.03 13.37 0.00 4.18
5 6 4.750098 TGAGTGAGAGTAAAAGCTTTTCCG 59.250 41.667 27.03 0.00 0.00 4.30
6 7 5.180304 CCTGAGTGAGAGTAAAAGCTTTTCC 59.820 44.000 27.03 16.79 0.00 3.13
7 8 5.180304 CCCTGAGTGAGAGTAAAAGCTTTTC 59.820 44.000 27.03 17.85 0.00 2.29
8 9 5.066593 CCCTGAGTGAGAGTAAAAGCTTTT 58.933 41.667 26.50 26.50 0.00 2.27
9 10 4.103311 ACCCTGAGTGAGAGTAAAAGCTTT 59.897 41.667 5.69 5.69 0.00 3.51
10 11 3.648545 ACCCTGAGTGAGAGTAAAAGCTT 59.351 43.478 0.00 0.00 0.00 3.74
11 12 3.243724 ACCCTGAGTGAGAGTAAAAGCT 58.756 45.455 0.00 0.00 0.00 3.74
12 13 3.591023 GACCCTGAGTGAGAGTAAAAGC 58.409 50.000 0.00 0.00 0.00 3.51
13 14 3.055747 GGGACCCTGAGTGAGAGTAAAAG 60.056 52.174 2.09 0.00 0.00 2.27
28 29 2.174685 AAGCAAAACAAAGGGACCCT 57.825 45.000 7.44 7.44 33.87 4.34
222 230 6.821388 ACATACTCTAACAATGAGGGTGATC 58.179 40.000 0.00 0.00 35.98 2.92
223 231 6.814954 ACATACTCTAACAATGAGGGTGAT 57.185 37.500 0.00 0.00 35.98 3.06
224 232 7.727578 TTACATACTCTAACAATGAGGGTGA 57.272 36.000 0.00 0.00 35.98 4.02
225 233 7.442364 CCATTACATACTCTAACAATGAGGGTG 59.558 40.741 0.00 0.00 35.98 4.61
226 234 7.420214 CCCATTACATACTCTAACAATGAGGGT 60.420 40.741 0.00 0.00 35.98 4.34
227 235 6.936900 CCCATTACATACTCTAACAATGAGGG 59.063 42.308 0.00 0.00 35.98 4.30
228 236 6.428159 GCCCATTACATACTCTAACAATGAGG 59.572 42.308 0.00 0.00 35.98 3.86
229 237 6.428159 GGCCCATTACATACTCTAACAATGAG 59.572 42.308 0.00 0.00 37.55 2.90
230 238 6.101150 AGGCCCATTACATACTCTAACAATGA 59.899 38.462 0.00 0.00 0.00 2.57
231 239 6.299141 AGGCCCATTACATACTCTAACAATG 58.701 40.000 0.00 0.00 0.00 2.82
232 240 6.515512 AGGCCCATTACATACTCTAACAAT 57.484 37.500 0.00 0.00 0.00 2.71
233 241 5.968676 AGGCCCATTACATACTCTAACAA 57.031 39.130 0.00 0.00 0.00 2.83
234 242 7.450074 CATTAGGCCCATTACATACTCTAACA 58.550 38.462 0.00 0.00 0.00 2.41
235 243 6.879458 CCATTAGGCCCATTACATACTCTAAC 59.121 42.308 0.00 0.00 0.00 2.34
236 244 7.016153 CCATTAGGCCCATTACATACTCTAA 57.984 40.000 0.00 0.00 0.00 2.10
237 245 6.620877 CCATTAGGCCCATTACATACTCTA 57.379 41.667 0.00 0.00 0.00 2.43
238 246 5.505181 CCATTAGGCCCATTACATACTCT 57.495 43.478 0.00 0.00 0.00 3.24
253 261 3.530067 GCAGCCAAGGCCATTAGG 58.470 61.111 5.01 1.32 43.17 2.69
260 268 1.598130 CTATACCGGCAGCCAAGGC 60.598 63.158 13.30 2.02 42.33 4.35
261 269 1.598130 GCTATACCGGCAGCCAAGG 60.598 63.158 13.30 8.15 0.00 3.61
262 270 4.049393 GCTATACCGGCAGCCAAG 57.951 61.111 13.30 4.35 0.00 3.61
272 280 4.401925 TCCTAAGACTAACGGGCTATACC 58.598 47.826 0.00 0.00 29.69 2.73
273 281 6.587206 AATCCTAAGACTAACGGGCTATAC 57.413 41.667 0.00 0.00 29.69 1.47
274 282 8.890410 ATTAATCCTAAGACTAACGGGCTATA 57.110 34.615 0.00 0.00 29.69 1.31
275 283 7.793948 ATTAATCCTAAGACTAACGGGCTAT 57.206 36.000 0.00 0.00 29.69 2.97
276 284 7.607615 AATTAATCCTAAGACTAACGGGCTA 57.392 36.000 0.00 0.00 29.69 3.93
277 285 6.496144 AATTAATCCTAAGACTAACGGGCT 57.504 37.500 0.00 0.00 32.36 5.19
278 286 7.664758 TCTAATTAATCCTAAGACTAACGGGC 58.335 38.462 0.00 0.00 0.00 6.13
298 306 9.593134 CCTAAGCAAGCGATTCTTATATCTAAT 57.407 33.333 6.01 0.00 32.74 1.73
299 307 8.035394 CCCTAAGCAAGCGATTCTTATATCTAA 58.965 37.037 6.01 0.00 32.74 2.10
300 308 7.363880 CCCCTAAGCAAGCGATTCTTATATCTA 60.364 40.741 6.01 0.00 32.74 1.98
301 309 6.402222 CCCTAAGCAAGCGATTCTTATATCT 58.598 40.000 6.01 0.00 32.74 1.98
302 310 5.582665 CCCCTAAGCAAGCGATTCTTATATC 59.417 44.000 6.01 0.00 32.74 1.63
303 311 5.491982 CCCCTAAGCAAGCGATTCTTATAT 58.508 41.667 6.01 0.00 32.74 0.86
304 312 4.262894 CCCCCTAAGCAAGCGATTCTTATA 60.263 45.833 6.01 0.00 32.74 0.98
305 313 3.496870 CCCCCTAAGCAAGCGATTCTTAT 60.497 47.826 6.01 0.00 32.74 1.73
306 314 2.158813 CCCCCTAAGCAAGCGATTCTTA 60.159 50.000 0.00 0.00 32.74 2.10
307 315 1.408822 CCCCCTAAGCAAGCGATTCTT 60.409 52.381 0.00 0.00 34.78 2.52
308 316 0.181350 CCCCCTAAGCAAGCGATTCT 59.819 55.000 0.00 0.00 0.00 2.40
309 317 0.107165 ACCCCCTAAGCAAGCGATTC 60.107 55.000 0.00 0.00 0.00 2.52
310 318 0.107165 GACCCCCTAAGCAAGCGATT 60.107 55.000 0.00 0.00 0.00 3.34
311 319 1.271840 TGACCCCCTAAGCAAGCGAT 61.272 55.000 0.00 0.00 0.00 4.58
312 320 1.485294 TTGACCCCCTAAGCAAGCGA 61.485 55.000 0.00 0.00 0.00 4.93
313 321 1.002624 TTGACCCCCTAAGCAAGCG 60.003 57.895 0.00 0.00 0.00 4.68
314 322 0.038310 ACTTGACCCCCTAAGCAAGC 59.962 55.000 0.00 0.00 40.94 4.01
315 323 3.610911 CTTACTTGACCCCCTAAGCAAG 58.389 50.000 0.00 0.00 42.46 4.01
316 324 2.290705 GCTTACTTGACCCCCTAAGCAA 60.291 50.000 0.00 0.00 40.48 3.91
317 325 1.280998 GCTTACTTGACCCCCTAAGCA 59.719 52.381 0.00 0.00 40.48 3.91
318 326 1.408405 GGCTTACTTGACCCCCTAAGC 60.408 57.143 0.00 0.00 40.19 3.09
319 327 2.197465 AGGCTTACTTGACCCCCTAAG 58.803 52.381 0.00 0.00 0.00 2.18
320 328 2.354261 AGGCTTACTTGACCCCCTAA 57.646 50.000 0.00 0.00 0.00 2.69
321 329 2.354261 AAGGCTTACTTGACCCCCTA 57.646 50.000 0.00 0.00 38.21 3.53
322 330 1.914108 GTAAGGCTTACTTGACCCCCT 59.086 52.381 26.23 0.00 40.37 4.79
323 331 1.914108 AGTAAGGCTTACTTGACCCCC 59.086 52.381 29.55 5.93 43.70 5.40
332 340 5.864628 CTTGACTTCCAAGTAAGGCTTAC 57.135 43.478 26.21 26.21 45.52 2.34
346 354 6.418946 AGATGGAAGGGATTTACTTGACTTC 58.581 40.000 0.00 0.00 34.98 3.01
347 355 6.394345 AGATGGAAGGGATTTACTTGACTT 57.606 37.500 0.00 0.00 0.00 3.01
348 356 6.394345 AAGATGGAAGGGATTTACTTGACT 57.606 37.500 0.00 0.00 0.00 3.41
349 357 6.542735 GGTAAGATGGAAGGGATTTACTTGAC 59.457 42.308 0.00 0.00 0.00 3.18
350 358 6.353602 GGGTAAGATGGAAGGGATTTACTTGA 60.354 42.308 0.00 0.00 0.00 3.02
351 359 5.828328 GGGTAAGATGGAAGGGATTTACTTG 59.172 44.000 0.00 0.00 0.00 3.16
352 360 5.397559 CGGGTAAGATGGAAGGGATTTACTT 60.398 44.000 0.00 0.00 0.00 2.24
353 361 4.102681 CGGGTAAGATGGAAGGGATTTACT 59.897 45.833 0.00 0.00 0.00 2.24
354 362 4.386711 CGGGTAAGATGGAAGGGATTTAC 58.613 47.826 0.00 0.00 0.00 2.01
355 363 3.393278 CCGGGTAAGATGGAAGGGATTTA 59.607 47.826 0.00 0.00 0.00 1.40
356 364 2.174854 CCGGGTAAGATGGAAGGGATTT 59.825 50.000 0.00 0.00 0.00 2.17
357 365 1.774856 CCGGGTAAGATGGAAGGGATT 59.225 52.381 0.00 0.00 0.00 3.01
358 366 1.435256 CCGGGTAAGATGGAAGGGAT 58.565 55.000 0.00 0.00 0.00 3.85
359 367 1.342672 GCCGGGTAAGATGGAAGGGA 61.343 60.000 2.18 0.00 0.00 4.20
360 368 1.148498 GCCGGGTAAGATGGAAGGG 59.852 63.158 2.18 0.00 0.00 3.95
361 369 1.148498 GGCCGGGTAAGATGGAAGG 59.852 63.158 2.18 0.00 0.00 3.46
362 370 1.227556 CGGCCGGGTAAGATGGAAG 60.228 63.158 20.10 0.00 0.00 3.46
363 371 1.991167 ACGGCCGGGTAAGATGGAA 60.991 57.895 31.76 0.00 0.00 3.53
364 372 2.364579 ACGGCCGGGTAAGATGGA 60.365 61.111 31.76 0.00 0.00 3.41
365 373 2.203015 CACGGCCGGGTAAGATGG 60.203 66.667 31.76 2.89 0.00 3.51
366 374 2.203015 CCACGGCCGGGTAAGATG 60.203 66.667 31.76 16.49 0.00 2.90
367 375 2.364579 TCCACGGCCGGGTAAGAT 60.365 61.111 31.76 2.42 0.00 2.40
368 376 3.384532 GTCCACGGCCGGGTAAGA 61.385 66.667 31.76 16.12 0.00 2.10
369 377 2.734948 TTTGTCCACGGCCGGGTAAG 62.735 60.000 31.76 13.62 0.00 2.34
370 378 2.335092 TTTTGTCCACGGCCGGGTAA 62.335 55.000 31.76 21.24 0.00 2.85
371 379 2.335092 TTTTTGTCCACGGCCGGGTA 62.335 55.000 31.76 10.36 0.00 3.69
372 380 3.717924 TTTTTGTCCACGGCCGGGT 62.718 57.895 31.76 6.18 0.00 5.28
373 381 2.907917 TTTTTGTCCACGGCCGGG 60.908 61.111 31.76 28.14 0.00 5.73
402 410 2.336484 GAAGGAGGGCATGAGAGGGC 62.336 65.000 0.00 0.00 0.00 5.19
403 411 0.693767 AGAAGGAGGGCATGAGAGGG 60.694 60.000 0.00 0.00 0.00 4.30
404 412 1.969923 CTAGAAGGAGGGCATGAGAGG 59.030 57.143 0.00 0.00 0.00 3.69
405 413 1.344114 GCTAGAAGGAGGGCATGAGAG 59.656 57.143 0.00 0.00 0.00 3.20
406 414 1.343377 TGCTAGAAGGAGGGCATGAGA 60.343 52.381 0.00 0.00 0.00 3.27
407 415 1.070445 CTGCTAGAAGGAGGGCATGAG 59.930 57.143 0.00 0.00 34.12 2.90
408 416 1.126488 CTGCTAGAAGGAGGGCATGA 58.874 55.000 0.00 0.00 34.12 3.07
409 417 0.534652 GCTGCTAGAAGGAGGGCATG 60.535 60.000 0.00 0.00 33.92 4.06
410 418 1.835693 GCTGCTAGAAGGAGGGCAT 59.164 57.895 0.00 0.00 33.92 4.40
411 419 2.725312 CGCTGCTAGAAGGAGGGCA 61.725 63.158 0.00 0.00 39.48 5.36
412 420 2.107953 CGCTGCTAGAAGGAGGGC 59.892 66.667 0.00 0.00 39.48 5.19
413 421 2.107953 GCGCTGCTAGAAGGAGGG 59.892 66.667 0.00 7.93 46.69 4.30
414 422 2.107953 GGCGCTGCTAGAAGGAGG 59.892 66.667 7.64 0.00 33.92 4.30
415 423 1.725557 TACGGCGCTGCTAGAAGGAG 61.726 60.000 18.15 0.00 36.68 3.69
416 424 1.317431 TTACGGCGCTGCTAGAAGGA 61.317 55.000 18.15 0.00 0.00 3.36
417 425 1.141019 TTACGGCGCTGCTAGAAGG 59.859 57.895 18.15 0.00 0.00 3.46
418 426 0.457853 TGTTACGGCGCTGCTAGAAG 60.458 55.000 18.15 0.00 0.00 2.85
419 427 0.734942 GTGTTACGGCGCTGCTAGAA 60.735 55.000 18.15 2.51 0.00 2.10
420 428 1.153901 GTGTTACGGCGCTGCTAGA 60.154 57.895 18.15 0.00 0.00 2.43
421 429 2.165301 GGTGTTACGGCGCTGCTAG 61.165 63.158 18.15 0.77 0.00 3.42
422 430 2.125832 GGTGTTACGGCGCTGCTA 60.126 61.111 18.15 5.24 0.00 3.49
425 433 1.153529 TATGGGTGTTACGGCGCTG 60.154 57.895 16.39 16.39 0.00 5.18
426 434 1.153509 GTATGGGTGTTACGGCGCT 60.154 57.895 6.90 0.00 0.00 5.92
427 435 1.448189 TGTATGGGTGTTACGGCGC 60.448 57.895 6.90 0.00 0.00 6.53
428 436 0.108520 AGTGTATGGGTGTTACGGCG 60.109 55.000 4.80 4.80 0.00 6.46
429 437 1.648504 GAGTGTATGGGTGTTACGGC 58.351 55.000 0.00 0.00 0.00 5.68
430 438 1.551430 TGGAGTGTATGGGTGTTACGG 59.449 52.381 0.00 0.00 0.00 4.02
431 439 3.536956 ATGGAGTGTATGGGTGTTACG 57.463 47.619 0.00 0.00 0.00 3.18
432 440 3.377172 GCAATGGAGTGTATGGGTGTTAC 59.623 47.826 0.00 0.00 0.00 2.50
433 441 3.009584 TGCAATGGAGTGTATGGGTGTTA 59.990 43.478 0.00 0.00 0.00 2.41
434 442 2.224992 TGCAATGGAGTGTATGGGTGTT 60.225 45.455 0.00 0.00 0.00 3.32
435 443 1.354031 TGCAATGGAGTGTATGGGTGT 59.646 47.619 0.00 0.00 0.00 4.16
436 444 2.019249 CTGCAATGGAGTGTATGGGTG 58.981 52.381 0.00 0.00 0.00 4.61
437 445 1.064463 CCTGCAATGGAGTGTATGGGT 60.064 52.381 0.21 0.00 0.00 4.51
458 466 9.268268 ACCGTTGACATATTATTATCATCGTTT 57.732 29.630 12.63 3.14 34.18 3.60
465 473 6.400727 GGTCGCACCGTTGACATATTATTATC 60.401 42.308 3.71 0.00 36.83 1.75
530 557 1.977854 TCCCGAGGTATAGGCGTACTA 59.022 52.381 0.00 0.00 35.80 1.82
535 562 2.833631 AAAATCCCGAGGTATAGGCG 57.166 50.000 0.00 0.00 0.00 5.52
541 568 5.427481 AGGAATACTGAAAAATCCCGAGGTA 59.573 40.000 0.00 0.00 0.00 3.08
582 633 2.365293 CTGCTTGTTTTAGTGGGCCTTT 59.635 45.455 4.53 0.00 0.00 3.11
585 636 0.603065 CCTGCTTGTTTTAGTGGGCC 59.397 55.000 0.00 0.00 0.00 5.80
661 718 4.836825 AGATAATCCGCATAGTTCCATGG 58.163 43.478 4.97 4.97 0.00 3.66
667 724 7.393841 GGAGTACTAGATAATCCGCATAGTT 57.606 40.000 0.00 0.00 38.24 2.24
690 764 4.082895 GCCATGATTAGAATAAGCTGCAGG 60.083 45.833 17.12 0.00 0.00 4.85
740 825 4.170251 AGGATACACTTCCTCCTAGCCTTA 59.830 45.833 0.00 0.00 42.71 2.69
785 879 3.123790 GCTTAAGACTTTCCACGAAGAGC 59.876 47.826 6.67 0.00 0.00 4.09
814 911 0.386478 GCTTTGCTGAGTCGGCTTTG 60.386 55.000 24.05 14.18 36.58 2.77
819 916 1.603802 TCTTTTGCTTTGCTGAGTCGG 59.396 47.619 0.00 0.00 0.00 4.79
912 1017 2.354003 GGCACCAACAAATCTTGGGATG 60.354 50.000 3.12 0.00 44.58 3.51
932 1038 6.019479 GTGATGAATTTCGTAACTGAGCTAGG 60.019 42.308 0.00 0.00 0.00 3.02
935 1041 5.482908 AGTGATGAATTTCGTAACTGAGCT 58.517 37.500 7.69 0.00 25.97 4.09
938 1044 6.925211 AGAGAGTGATGAATTTCGTAACTGA 58.075 36.000 12.55 0.00 27.19 3.41
995 1101 3.021451 GAAGGTATTCCCATGGCCG 57.979 57.895 6.09 0.00 34.66 6.13
1104 1213 5.870706 TCTTCCTCCTTTTCTTCTTTCTCC 58.129 41.667 0.00 0.00 0.00 3.71
1107 1216 6.429692 CCTCTTCTTCCTCCTTTTCTTCTTTC 59.570 42.308 0.00 0.00 0.00 2.62
1117 1226 0.800239 TCCCCCTCTTCTTCCTCCTT 59.200 55.000 0.00 0.00 0.00 3.36
1128 1237 1.439143 ACCTCTTCTTCTTCCCCCTCT 59.561 52.381 0.00 0.00 0.00 3.69
1129 1238 1.959710 ACCTCTTCTTCTTCCCCCTC 58.040 55.000 0.00 0.00 0.00 4.30
1136 1245 6.934083 GTCATCTTCTTCAACCTCTTCTTCTT 59.066 38.462 0.00 0.00 0.00 2.52
1152 1261 4.892345 TCATCCTCTTCATCGTCATCTTCT 59.108 41.667 0.00 0.00 0.00 2.85
1161 1270 5.840715 TCTTCATCTTCATCCTCTTCATCG 58.159 41.667 0.00 0.00 0.00 3.84
1170 1279 7.894376 GATGATCTCTTCTTCATCTTCATCC 57.106 40.000 5.82 0.00 43.13 3.51
1177 1286 6.964908 TGTCGTAGATGATCTCTTCTTCATC 58.035 40.000 0.00 5.05 45.56 2.92
1178 1287 6.951062 TGTCGTAGATGATCTCTTCTTCAT 57.049 37.500 0.00 0.00 40.67 2.57
1179 1288 6.404844 GGTTGTCGTAGATGATCTCTTCTTCA 60.405 42.308 0.00 0.00 40.67 3.02
1180 1289 5.974751 GGTTGTCGTAGATGATCTCTTCTTC 59.025 44.000 0.00 0.00 40.67 2.87
1181 1290 5.654650 AGGTTGTCGTAGATGATCTCTTCTT 59.345 40.000 0.00 0.00 40.67 2.52
1182 1291 5.197451 AGGTTGTCGTAGATGATCTCTTCT 58.803 41.667 0.00 1.78 40.67 2.85
1183 1292 5.298276 AGAGGTTGTCGTAGATGATCTCTTC 59.702 44.000 0.00 0.00 38.15 2.87
1184 1293 5.197451 AGAGGTTGTCGTAGATGATCTCTT 58.803 41.667 0.00 0.00 38.15 2.85
1268 1377 1.404181 CGATCGTCATGGTTGAGGTGT 60.404 52.381 7.03 0.00 38.57 4.16
1287 1397 2.610694 CCGGCTAGATTGCATGGCG 61.611 63.158 0.00 11.11 45.75 5.69
1288 1398 1.526917 ACCGGCTAGATTGCATGGC 60.527 57.895 0.00 0.00 34.64 4.40
1289 1399 0.464373 ACACCGGCTAGATTGCATGG 60.464 55.000 0.00 0.00 36.49 3.66
1301 1411 0.667792 GAGAGTCAACAGACACCGGC 60.668 60.000 0.00 0.00 34.69 6.13
1316 1426 3.587923 CCAGCTCAAGAGTTCAAGAGAG 58.412 50.000 0.00 0.00 0.00 3.20
1333 1443 1.134995 GCCAGTGAAATTAAGGCCAGC 60.135 52.381 5.01 0.00 39.42 4.85
1357 1467 1.134487 CCAATTGTACACCTGCGCG 59.866 57.895 0.00 0.00 0.00 6.86
1397 1507 1.523154 GGCCTGACCATGCGAAACAA 61.523 55.000 0.00 0.00 38.86 2.83
1449 1559 7.085052 TCGATCCATGTACATAGTACTATGC 57.915 40.000 33.26 22.17 45.06 3.14
1452 1562 8.101419 AGTGATCGATCCATGTACATAGTACTA 58.899 37.037 22.31 4.77 0.00 1.82
1453 1563 6.943146 AGTGATCGATCCATGTACATAGTACT 59.057 38.462 22.31 11.01 0.00 2.73
1454 1564 7.024171 CAGTGATCGATCCATGTACATAGTAC 58.976 42.308 22.31 8.96 0.00 2.73
1457 1567 5.183904 TCCAGTGATCGATCCATGTACATAG 59.816 44.000 22.31 0.63 0.00 2.23
1461 1571 4.527509 ATCCAGTGATCGATCCATGTAC 57.472 45.455 22.31 13.12 0.00 2.90
1476 1586 6.365970 AGAGAAGTCATTTGTGTATCCAGT 57.634 37.500 0.00 0.00 0.00 4.00
1479 1589 7.856145 ATCAAGAGAAGTCATTTGTGTATCC 57.144 36.000 0.00 0.00 0.00 2.59
1481 1591 8.105829 AGGAATCAAGAGAAGTCATTTGTGTAT 58.894 33.333 0.00 0.00 0.00 2.29
1482 1592 7.453393 AGGAATCAAGAGAAGTCATTTGTGTA 58.547 34.615 0.00 0.00 0.00 2.90
1486 1599 7.684937 AAGAGGAATCAAGAGAAGTCATTTG 57.315 36.000 0.00 0.00 0.00 2.32
1492 1605 4.599241 TGGGAAAGAGGAATCAAGAGAAGT 59.401 41.667 0.00 0.00 0.00 3.01
1556 1669 0.616395 TCTTGGACATAGGGGCGACA 60.616 55.000 0.00 0.00 0.00 4.35
1787 1945 2.227388 GCACCTTGACAACAGGATTCTG 59.773 50.000 0.00 0.00 46.10 3.02
1805 1963 0.394352 ATGAATTCCGTCCCTGGCAC 60.394 55.000 2.27 0.00 0.00 5.01
1876 2034 2.472695 TGTCTTTCCATTCAGGGTCG 57.527 50.000 0.00 0.00 38.24 4.79
1913 2071 4.647424 TCACCACTTTGCCTGTTAAAAG 57.353 40.909 0.00 0.00 38.95 2.27
1921 2079 1.484038 TTTGCTTCACCACTTTGCCT 58.516 45.000 0.00 0.00 0.00 4.75
1922 2080 2.137523 CATTTGCTTCACCACTTTGCC 58.862 47.619 0.00 0.00 0.00 4.52
1926 2084 2.949447 ACTCCATTTGCTTCACCACTT 58.051 42.857 0.00 0.00 0.00 3.16
1927 2085 2.664402 ACTCCATTTGCTTCACCACT 57.336 45.000 0.00 0.00 0.00 4.00
1928 2086 2.622942 TGAACTCCATTTGCTTCACCAC 59.377 45.455 0.00 0.00 0.00 4.16
1929 2087 2.942804 TGAACTCCATTTGCTTCACCA 58.057 42.857 0.00 0.00 0.00 4.17
1930 2088 3.256631 ACATGAACTCCATTTGCTTCACC 59.743 43.478 0.00 0.00 31.94 4.02
1931 2089 4.510038 ACATGAACTCCATTTGCTTCAC 57.490 40.909 0.00 0.00 31.94 3.18
2430 2588 5.036916 TGGAACAGAGTATTTAGATGGGGT 58.963 41.667 0.00 0.00 0.00 4.95
2513 2671 3.228188 ACCTGGACAAATTCAGCAAGA 57.772 42.857 0.00 0.00 0.00 3.02
2572 2731 7.847096 TGCATCAGAAAGTATTACCTTCAGTA 58.153 34.615 7.69 0.00 0.00 2.74
2756 2932 6.648725 GTTAACTAGGCAGTAGTGAACATG 57.351 41.667 16.00 0.00 46.71 3.21
2878 3365 5.690865 TGATAAAATCTTGCGGGTATCCTT 58.309 37.500 0.00 0.00 0.00 3.36
3207 3707 1.260297 TGCAAACTGTCACATCGAACG 59.740 47.619 0.00 0.00 0.00 3.95
3334 3834 5.518865 ACTACAACCCAATGGCTAATCATT 58.481 37.500 0.00 0.00 37.81 2.57
3390 3891 8.916062 TCCAGATACACACCGTATTTATCTTTA 58.084 33.333 0.00 0.00 41.06 1.85
3407 3908 4.974645 AACCTTGTGACTTCCAGATACA 57.025 40.909 0.00 0.00 0.00 2.29
3421 3922 7.509546 TCATGAAAGAACTTCTCTAACCTTGT 58.490 34.615 0.00 0.00 34.86 3.16
3588 4091 2.616510 GCAGCTTCACCCTGTATCTTGT 60.617 50.000 0.00 0.00 32.93 3.16
3599 4102 1.508632 TCGTTTACTGCAGCTTCACC 58.491 50.000 15.27 0.00 0.00 4.02
3704 4207 2.753452 TCCTTACCACATCGTCAGAGTC 59.247 50.000 0.00 0.00 0.00 3.36
3706 4209 4.392921 AATCCTTACCACATCGTCAGAG 57.607 45.455 0.00 0.00 0.00 3.35
3785 4557 3.568007 TCAAAAATGACTTGAACTCGGGG 59.432 43.478 0.00 0.00 29.93 5.73
3855 4627 7.004555 TGTAGCAGAAATAAAGAGAACTCCA 57.995 36.000 0.00 0.00 0.00 3.86
3929 4702 3.511477 TCCATAGCTCCCTGGTATTCTC 58.489 50.000 9.11 0.00 37.26 2.87
3982 4755 4.923281 CAGGCTCCATTTTTAAAAAGGTCG 59.077 41.667 20.35 13.13 0.00 4.79
4051 4829 5.494724 AGATACATGAGAAACTGCACACAT 58.505 37.500 0.00 0.00 0.00 3.21
4214 5003 4.217510 TCAATCTAATTTCCCATGGCCAG 58.782 43.478 13.05 3.10 0.00 4.85
4215 5004 4.262891 TCAATCTAATTTCCCATGGCCA 57.737 40.909 8.56 8.56 0.00 5.36
4216 5005 8.593945 TTATATCAATCTAATTTCCCATGGCC 57.406 34.615 6.09 0.00 0.00 5.36
4433 5222 4.189231 AGCCATGAAATTACGGAGTGTAC 58.811 43.478 0.00 0.00 45.73 2.90
4530 5319 5.420725 TTCTTGCACATATGTACTGGAGT 57.579 39.130 8.32 0.00 0.00 3.85
4603 5392 9.988815 GAACACAGATATTCTACCATAAGACAT 57.011 33.333 0.00 0.00 0.00 3.06
4604 5393 9.201989 AGAACACAGATATTCTACCATAAGACA 57.798 33.333 0.00 0.00 33.35 3.41
4714 5538 6.374333 GCTGATCAAATGGTCTTAGTGGTTTA 59.626 38.462 0.00 0.00 0.00 2.01
4810 5634 7.391148 TTGTATTTTAGATTCTTCACAGCCC 57.609 36.000 0.00 0.00 0.00 5.19
5057 5887 5.072329 ACCTAGCCATACTAAGCACATCAAT 59.928 40.000 0.00 0.00 0.00 2.57
5181 6011 3.059597 CACGCCTTCATCGGTCATTTATC 60.060 47.826 0.00 0.00 0.00 1.75
5187 6017 0.821517 ATACACGCCTTCATCGGTCA 59.178 50.000 0.00 0.00 0.00 4.02
5189 6019 3.746045 AATATACACGCCTTCATCGGT 57.254 42.857 0.00 0.00 0.00 4.69
5229 6059 4.805609 GCCTTGATTGGACTCTCAGTTTCT 60.806 45.833 0.00 0.00 0.00 2.52
5235 6065 1.661463 AGGCCTTGATTGGACTCTCA 58.339 50.000 0.00 0.00 43.16 3.27
5240 6070 2.369394 CACCTAAGGCCTTGATTGGAC 58.631 52.381 28.77 0.00 34.64 4.02
5249 6079 2.563039 TAACCTAGCACCTAAGGCCT 57.437 50.000 0.00 0.00 0.00 5.19
5251 6081 2.158813 TGCATAACCTAGCACCTAAGGC 60.159 50.000 0.00 0.00 35.51 4.35
5336 6167 4.600692 AACTTTGCAATACCCTGAAACC 57.399 40.909 0.00 0.00 0.00 3.27
5533 6368 2.039480 TGCCATCTCATCCTCCTAATGC 59.961 50.000 0.00 0.00 0.00 3.56
5625 6460 3.986572 TGCATTGTCTAAAATTGTTGCCG 59.013 39.130 0.00 0.00 0.00 5.69
5637 6472 5.772825 AAGCTTTTTCTGTGCATTGTCTA 57.227 34.783 0.00 0.00 0.00 2.59
5669 6504 2.739379 GTTCAGACTTCAAGCACCTAGC 59.261 50.000 0.00 0.00 46.19 3.42
5717 6552 4.633126 GCATCAGTTCTGTATTGCTCTGAA 59.367 41.667 13.32 0.00 35.94 3.02
5844 6680 4.474394 TGTCTGGATCTCTTATCCACGAT 58.526 43.478 2.57 0.00 42.81 3.73
5881 6717 9.087424 TGAATATGATCAACTCAAGAGTAAACG 57.913 33.333 0.00 0.00 41.58 3.60
5895 6731 3.118445 TCCCAGTGCGTGAATATGATCAA 60.118 43.478 0.00 0.00 0.00 2.57
5908 6744 1.290324 CGATATCCCTCCCAGTGCG 59.710 63.158 0.00 0.00 0.00 5.34
5912 6748 3.510360 ACGAATTACGATATCCCTCCCAG 59.490 47.826 0.00 0.00 45.77 4.45
5926 6762 5.333046 TGTGAGGAAAAACGACGAATTAC 57.667 39.130 0.00 0.00 0.00 1.89
5927 6763 5.697178 TGATGTGAGGAAAAACGACGAATTA 59.303 36.000 0.00 0.00 0.00 1.40
5963 6806 1.741706 GATGAGGCATTCACACAGTGG 59.258 52.381 5.31 0.00 38.99 4.00
6130 6984 5.537300 ATGTCGGCTTCAGTTATAGTCAT 57.463 39.130 0.00 0.00 0.00 3.06
6131 6985 5.339008 AATGTCGGCTTCAGTTATAGTCA 57.661 39.130 0.00 0.00 0.00 3.41
6147 7001 4.110493 GGCCTCTTCCGAATGTCG 57.890 61.111 0.00 0.00 40.07 4.35
6166 7020 2.736995 CGGGTACGTGTGCCACAG 60.737 66.667 9.37 0.00 37.05 3.66
6333 7196 2.900273 GGCCCGATCTGCTGTGTA 59.100 61.111 0.00 0.00 0.00 2.90
6556 7425 4.157656 TGAAACGGGCCTCAAATGAATTAG 59.842 41.667 0.84 0.00 0.00 1.73
6669 7568 9.843334 GGAGAATATCTTACGAACCACTATTAG 57.157 37.037 0.00 0.00 0.00 1.73
6670 7569 9.584008 AGGAGAATATCTTACGAACCACTATTA 57.416 33.333 0.00 0.00 0.00 0.98
6671 7570 8.480133 AGGAGAATATCTTACGAACCACTATT 57.520 34.615 0.00 0.00 0.00 1.73
6672 7571 8.480133 AAGGAGAATATCTTACGAACCACTAT 57.520 34.615 0.00 0.00 0.00 2.12
6673 7572 7.558807 TGAAGGAGAATATCTTACGAACCACTA 59.441 37.037 0.00 0.00 0.00 2.74
6674 7573 6.380274 TGAAGGAGAATATCTTACGAACCACT 59.620 38.462 0.00 0.00 0.00 4.00
6675 7574 6.476053 GTGAAGGAGAATATCTTACGAACCAC 59.524 42.308 0.00 0.00 0.00 4.16
6676 7575 6.406624 GGTGAAGGAGAATATCTTACGAACCA 60.407 42.308 0.00 0.00 0.00 3.67
6677 7576 5.984323 GGTGAAGGAGAATATCTTACGAACC 59.016 44.000 0.00 0.00 0.00 3.62
6678 7577 6.697892 CAGGTGAAGGAGAATATCTTACGAAC 59.302 42.308 0.00 0.00 0.00 3.95
6679 7578 6.605995 TCAGGTGAAGGAGAATATCTTACGAA 59.394 38.462 0.00 0.00 0.00 3.85
6680 7579 6.039493 GTCAGGTGAAGGAGAATATCTTACGA 59.961 42.308 0.00 0.00 0.00 3.43
6681 7580 6.039941 AGTCAGGTGAAGGAGAATATCTTACG 59.960 42.308 0.00 0.00 0.00 3.18
6682 7581 7.354751 AGTCAGGTGAAGGAGAATATCTTAC 57.645 40.000 0.00 0.00 0.00 2.34
6683 7582 7.979786 AAGTCAGGTGAAGGAGAATATCTTA 57.020 36.000 0.00 0.00 0.00 2.10
6684 7583 6.882768 AAGTCAGGTGAAGGAGAATATCTT 57.117 37.500 0.00 0.00 0.00 2.40
6685 7584 7.358263 TCTAAGTCAGGTGAAGGAGAATATCT 58.642 38.462 0.00 0.00 0.00 1.98
6686 7585 7.504238 TCTCTAAGTCAGGTGAAGGAGAATATC 59.496 40.741 0.00 0.00 0.00 1.63
6687 7586 7.358263 TCTCTAAGTCAGGTGAAGGAGAATAT 58.642 38.462 0.00 0.00 0.00 1.28
6688 7587 6.732487 TCTCTAAGTCAGGTGAAGGAGAATA 58.268 40.000 0.00 0.00 0.00 1.75
6689 7588 5.584913 TCTCTAAGTCAGGTGAAGGAGAAT 58.415 41.667 0.00 0.00 0.00 2.40
6690 7589 4.999310 TCTCTAAGTCAGGTGAAGGAGAA 58.001 43.478 0.00 0.00 0.00 2.87
6691 7590 4.659529 TCTCTAAGTCAGGTGAAGGAGA 57.340 45.455 0.00 0.00 0.00 3.71
6692 7591 4.952957 TCATCTCTAAGTCAGGTGAAGGAG 59.047 45.833 0.00 0.00 0.00 3.69
6693 7592 4.707448 GTCATCTCTAAGTCAGGTGAAGGA 59.293 45.833 0.00 0.00 0.00 3.36
6694 7593 4.464244 TGTCATCTCTAAGTCAGGTGAAGG 59.536 45.833 0.00 0.00 0.00 3.46
6695 7594 5.184864 ACTGTCATCTCTAAGTCAGGTGAAG 59.815 44.000 0.00 0.00 0.00 3.02
6696 7595 5.080337 ACTGTCATCTCTAAGTCAGGTGAA 58.920 41.667 0.00 0.00 0.00 3.18
6697 7596 4.667573 ACTGTCATCTCTAAGTCAGGTGA 58.332 43.478 0.00 0.00 0.00 4.02
6698 7597 6.516739 TTACTGTCATCTCTAAGTCAGGTG 57.483 41.667 0.00 0.00 0.00 4.00
6699 7598 7.540474 TTTTACTGTCATCTCTAAGTCAGGT 57.460 36.000 0.00 0.00 0.00 4.00
6713 7612 9.508642 TCCATTGTACACATATTTTTACTGTCA 57.491 29.630 0.00 0.00 0.00 3.58
6763 7662 2.495939 CGAAATGGTCTCGCTTTTTCG 58.504 47.619 0.00 0.00 41.51 3.46
6764 7663 2.482721 TCCGAAATGGTCTCGCTTTTTC 59.517 45.455 0.00 0.00 39.52 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.