Multiple sequence alignment - TraesCS5A01G326200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G326200 chr5A 100.000 2281 0 0 1 2281 536712256 536709976 0.000000e+00 4213
1 TraesCS5A01G326200 chr5A 100.000 219 0 0 2409 2627 536709848 536709630 3.150000e-109 405
2 TraesCS5A01G326200 chr1B 99.404 1678 10 0 1 1678 669918193 669919870 0.000000e+00 3044
3 TraesCS5A01G326200 chr1B 98.989 1682 13 3 1 1680 418167226 418165547 0.000000e+00 3009
4 TraesCS5A01G326200 chr3B 99.225 1677 13 0 1 1677 773547012 773548688 0.000000e+00 3025
5 TraesCS5A01G326200 chr7A 99.106 1677 13 1 1 1675 30716182 30714506 0.000000e+00 3013
6 TraesCS5A01G326200 chr7A 94.620 1301 66 3 377 1674 667967885 667966586 0.000000e+00 2012
7 TraesCS5A01G326200 chr7B 97.497 1678 38 2 1 1675 63493086 63494762 0.000000e+00 2863
8 TraesCS5A01G326200 chr2A 96.655 1674 54 2 3 1676 40957567 40955896 0.000000e+00 2780
9 TraesCS5A01G326200 chr2A 96.313 1356 48 2 325 1678 722079736 722078381 0.000000e+00 2226
10 TraesCS5A01G326200 chr2A 83.333 600 100 0 1 600 407750224 407750823 2.950000e-154 555
11 TraesCS5A01G326200 chr2A 94.888 313 15 1 1 313 722093048 722092737 3.040000e-134 488
12 TraesCS5A01G326200 chr1A 94.093 1676 91 6 1 1676 592501710 592500043 0.000000e+00 2540
13 TraesCS5A01G326200 chr5D 79.638 663 46 45 1676 2274 423257172 423256535 6.810000e-106 394
14 TraesCS5A01G326200 chr5B 82.388 335 31 19 1676 2001 510815355 510815040 1.550000e-67 267
15 TraesCS5A01G326200 chr5B 83.128 243 13 11 2054 2280 510815034 510814804 2.060000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G326200 chr5A 536709630 536712256 2626 True 2309.0 4213 100.000 1 2627 2 chr5A.!!$R1 2626
1 TraesCS5A01G326200 chr1B 669918193 669919870 1677 False 3044.0 3044 99.404 1 1678 1 chr1B.!!$F1 1677
2 TraesCS5A01G326200 chr1B 418165547 418167226 1679 True 3009.0 3009 98.989 1 1680 1 chr1B.!!$R1 1679
3 TraesCS5A01G326200 chr3B 773547012 773548688 1676 False 3025.0 3025 99.225 1 1677 1 chr3B.!!$F1 1676
4 TraesCS5A01G326200 chr7A 30714506 30716182 1676 True 3013.0 3013 99.106 1 1675 1 chr7A.!!$R1 1674
5 TraesCS5A01G326200 chr7A 667966586 667967885 1299 True 2012.0 2012 94.620 377 1674 1 chr7A.!!$R2 1297
6 TraesCS5A01G326200 chr7B 63493086 63494762 1676 False 2863.0 2863 97.497 1 1675 1 chr7B.!!$F1 1674
7 TraesCS5A01G326200 chr2A 40955896 40957567 1671 True 2780.0 2780 96.655 3 1676 1 chr2A.!!$R1 1673
8 TraesCS5A01G326200 chr2A 722078381 722079736 1355 True 2226.0 2226 96.313 325 1678 1 chr2A.!!$R2 1353
9 TraesCS5A01G326200 chr2A 407750224 407750823 599 False 555.0 555 83.333 1 600 1 chr2A.!!$F1 599
10 TraesCS5A01G326200 chr1A 592500043 592501710 1667 True 2540.0 2540 94.093 1 1676 1 chr1A.!!$R1 1675
11 TraesCS5A01G326200 chr5D 423256535 423257172 637 True 394.0 394 79.638 1676 2274 1 chr5D.!!$R1 598
12 TraesCS5A01G326200 chr5B 510814804 510815355 551 True 231.5 267 82.758 1676 2280 2 chr5B.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 3.415212 CATCTGGGTTGCTCTTTCTTCA 58.585 45.455 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2122 0.101759 TTATCGCCCGTCTACACAGC 59.898 55.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 3.415212 CATCTGGGTTGCTCTTTCTTCA 58.585 45.455 0.00 0.00 0.00 3.02
281 282 7.562454 TCAAGAACCGGACTTTAGATATCCTTA 59.438 37.037 9.46 0.00 0.00 2.69
445 446 4.755411 TCTCACTCCGAATGGTATTTGTC 58.245 43.478 0.00 0.00 36.30 3.18
1523 1534 6.503560 TTCTAGGGTTGAACCTCAAGTTTA 57.496 37.500 14.87 0.00 42.09 2.01
1745 1756 2.357517 CGTGCTTGGAGGCGTCTT 60.358 61.111 6.34 0.00 34.52 3.01
1746 1757 2.383527 CGTGCTTGGAGGCGTCTTC 61.384 63.158 6.34 0.00 34.52 2.87
1747 1758 1.004440 GTGCTTGGAGGCGTCTTCT 60.004 57.895 6.34 0.00 34.52 2.85
1757 1768 3.911989 GCGTCTTCTGCCATTCATG 57.088 52.632 0.00 0.00 0.00 3.07
1796 1830 1.606350 GACGCCTTGAAGTCGTCGTG 61.606 60.000 13.03 0.00 42.18 4.35
1829 1868 2.555199 AGCTAACTGCCATTGTCGATC 58.445 47.619 0.00 0.00 44.23 3.69
1902 1941 0.041238 ATCAGAGTCACGGGGAAGGA 59.959 55.000 0.00 0.00 0.00 3.36
1932 1971 3.828657 GGAACGGAGGAAGTGTACC 57.171 57.895 0.00 0.00 0.00 3.34
1949 2003 2.795231 ACCGCTGTCTACTGGTAGTA 57.205 50.000 7.52 0.00 34.84 1.82
1951 2005 2.026449 ACCGCTGTCTACTGGTAGTAGT 60.026 50.000 13.86 0.00 46.31 2.73
1952 2006 3.198635 ACCGCTGTCTACTGGTAGTAGTA 59.801 47.826 13.86 5.97 46.31 1.82
1968 2042 9.186837 TGGTAGTAGTAGTATCTTTCTTCCTTG 57.813 37.037 0.00 0.00 0.00 3.61
1969 2043 8.136800 GGTAGTAGTAGTATCTTTCTTCCTTGC 58.863 40.741 0.00 0.00 0.00 4.01
1985 2059 0.522626 TTGCTCGCCAATGATGTGTG 59.477 50.000 0.00 0.00 0.00 3.82
1992 2066 2.096565 CGCCAATGATGTGTGATCGATC 60.097 50.000 18.72 18.72 0.00 3.69
2002 2076 1.135112 TGTGATCGATCAAGGACACGG 60.135 52.381 28.83 0.00 38.75 4.94
2005 2079 2.194271 GATCGATCAAGGACACGGTTC 58.806 52.381 20.52 0.00 0.00 3.62
2006 2080 1.254026 TCGATCAAGGACACGGTTCT 58.746 50.000 0.00 0.00 0.00 3.01
2007 2081 1.067846 TCGATCAAGGACACGGTTCTG 60.068 52.381 0.00 0.00 0.00 3.02
2008 2082 1.067846 CGATCAAGGACACGGTTCTGA 60.068 52.381 0.00 0.00 0.00 3.27
2010 2084 3.600388 GATCAAGGACACGGTTCTGAAT 58.400 45.455 0.00 0.00 0.00 2.57
2011 2085 3.040147 TCAAGGACACGGTTCTGAATC 57.960 47.619 0.00 0.00 0.00 2.52
2015 2089 2.567169 AGGACACGGTTCTGAATCATCA 59.433 45.455 1.08 0.00 0.00 3.07
2028 2102 5.009854 TGAATCATCAGAGCGTGTCATAA 57.990 39.130 0.00 0.00 0.00 1.90
2036 2110 2.679837 AGAGCGTGTCATAATTTGGCTG 59.320 45.455 0.00 0.00 0.00 4.85
2037 2111 1.133025 AGCGTGTCATAATTTGGCTGC 59.867 47.619 0.00 0.00 33.84 5.25
2038 2112 1.798813 GCGTGTCATAATTTGGCTGCC 60.799 52.381 12.87 12.87 0.00 4.85
2039 2113 1.531677 CGTGTCATAATTTGGCTGCCG 60.532 52.381 14.98 0.00 0.00 5.69
2040 2114 1.742831 GTGTCATAATTTGGCTGCCGA 59.257 47.619 14.98 9.85 0.00 5.54
2041 2115 2.016318 TGTCATAATTTGGCTGCCGAG 58.984 47.619 14.98 0.00 0.00 4.63
2042 2116 2.017049 GTCATAATTTGGCTGCCGAGT 58.983 47.619 14.98 6.09 0.00 4.18
2044 2118 3.625764 GTCATAATTTGGCTGCCGAGTTA 59.374 43.478 21.74 21.74 0.00 2.24
2045 2119 4.275936 GTCATAATTTGGCTGCCGAGTTAT 59.724 41.667 23.70 23.70 32.33 1.89
2046 2120 4.887071 TCATAATTTGGCTGCCGAGTTATT 59.113 37.500 25.74 17.68 30.54 1.40
2048 2122 3.508744 ATTTGGCTGCCGAGTTATTTG 57.491 42.857 14.98 0.00 0.00 2.32
2049 2123 0.525761 TTGGCTGCCGAGTTATTTGC 59.474 50.000 14.98 0.00 0.00 3.68
2052 2126 0.804989 GCTGCCGAGTTATTTGCTGT 59.195 50.000 0.00 0.00 0.00 4.40
2062 2136 2.018542 TATTTGCTGTGTAGACGGGC 57.981 50.000 0.40 1.16 0.00 6.13
2077 2151 5.814764 AGACGGGCGATAACATATAGTAG 57.185 43.478 0.00 0.00 0.00 2.57
2078 2152 5.251764 AGACGGGCGATAACATATAGTAGT 58.748 41.667 0.00 0.00 0.00 2.73
2079 2153 6.409704 AGACGGGCGATAACATATAGTAGTA 58.590 40.000 0.00 0.00 0.00 1.82
2080 2154 6.538021 AGACGGGCGATAACATATAGTAGTAG 59.462 42.308 0.00 0.00 0.00 2.57
2081 2155 6.176183 ACGGGCGATAACATATAGTAGTAGT 58.824 40.000 0.00 0.00 0.00 2.73
2082 2156 7.331026 ACGGGCGATAACATATAGTAGTAGTA 58.669 38.462 0.00 0.00 0.00 1.82
2094 2170 4.106029 AGTAGTAGTACATGTTGGCACG 57.894 45.455 2.30 0.00 0.00 5.34
2131 2207 1.725931 GCACATGCCGCGATTTATAGC 60.726 52.381 8.23 0.00 34.31 2.97
2248 2338 3.702048 TTCCCGGCCTTCCAGTCG 61.702 66.667 0.00 0.00 0.00 4.18
2249 2339 4.689549 TCCCGGCCTTCCAGTCGA 62.690 66.667 0.00 0.00 0.00 4.20
2250 2340 4.148825 CCCGGCCTTCCAGTCGAG 62.149 72.222 0.00 0.00 0.00 4.04
2251 2341 4.148825 CCGGCCTTCCAGTCGAGG 62.149 72.222 0.00 0.00 36.09 4.63
2430 2520 2.428187 TGGTAACAGTGGTGGCCG 59.572 61.111 0.00 0.00 46.17 6.13
2431 2521 2.141448 TGGTAACAGTGGTGGCCGA 61.141 57.895 0.00 0.00 46.17 5.54
2432 2522 1.298667 GGTAACAGTGGTGGCCGAT 59.701 57.895 0.00 0.00 0.00 4.18
2433 2523 1.024579 GGTAACAGTGGTGGCCGATG 61.025 60.000 0.00 0.00 0.00 3.84
2434 2524 0.036765 GTAACAGTGGTGGCCGATGA 60.037 55.000 0.00 0.00 0.00 2.92
2435 2525 0.249120 TAACAGTGGTGGCCGATGAG 59.751 55.000 0.00 0.00 0.00 2.90
2436 2526 1.768684 AACAGTGGTGGCCGATGAGT 61.769 55.000 0.00 0.00 0.00 3.41
2437 2527 1.742880 CAGTGGTGGCCGATGAGTG 60.743 63.158 0.00 0.00 0.00 3.51
2438 2528 2.217038 AGTGGTGGCCGATGAGTGT 61.217 57.895 0.00 0.00 0.00 3.55
2439 2529 1.302511 GTGGTGGCCGATGAGTGTT 60.303 57.895 0.00 0.00 0.00 3.32
2440 2530 0.889186 GTGGTGGCCGATGAGTGTTT 60.889 55.000 0.00 0.00 0.00 2.83
2441 2531 0.888736 TGGTGGCCGATGAGTGTTTG 60.889 55.000 0.00 0.00 0.00 2.93
2442 2532 1.210155 GTGGCCGATGAGTGTTTGC 59.790 57.895 0.00 0.00 0.00 3.68
2443 2533 2.324330 TGGCCGATGAGTGTTTGCG 61.324 57.895 0.00 0.00 0.00 4.85
2444 2534 2.325082 GGCCGATGAGTGTTTGCGT 61.325 57.895 0.00 0.00 0.00 5.24
2445 2535 1.132640 GCCGATGAGTGTTTGCGTC 59.867 57.895 0.00 0.00 0.00 5.19
2446 2536 1.416049 CCGATGAGTGTTTGCGTCG 59.584 57.895 0.00 0.00 41.74 5.12
2447 2537 1.416049 CGATGAGTGTTTGCGTCGG 59.584 57.895 0.00 0.00 39.24 4.79
2448 2538 1.006825 CGATGAGTGTTTGCGTCGGA 61.007 55.000 0.00 0.00 39.24 4.55
2449 2539 0.716108 GATGAGTGTTTGCGTCGGAG 59.284 55.000 0.00 0.00 0.00 4.63
2450 2540 0.317160 ATGAGTGTTTGCGTCGGAGA 59.683 50.000 0.00 0.00 0.00 3.71
2481 2571 2.336554 TTTTTACCGAGGACGAGACG 57.663 50.000 0.00 0.00 42.66 4.18
2482 2572 1.238439 TTTTACCGAGGACGAGACGT 58.762 50.000 0.00 0.00 45.10 4.34
2483 2573 2.093306 TTTACCGAGGACGAGACGTA 57.907 50.000 0.00 0.00 41.37 3.57
2484 2574 1.645034 TTACCGAGGACGAGACGTAG 58.355 55.000 0.00 0.00 41.37 3.51
2485 2575 0.807667 TACCGAGGACGAGACGTAGC 60.808 60.000 0.00 0.00 41.37 3.58
2486 2576 2.104859 CCGAGGACGAGACGTAGCA 61.105 63.158 0.00 0.00 41.37 3.49
2487 2577 1.060622 CGAGGACGAGACGTAGCAC 59.939 63.158 0.00 0.00 41.37 4.40
2488 2578 1.632948 CGAGGACGAGACGTAGCACA 61.633 60.000 0.00 0.00 41.37 4.57
2489 2579 0.179194 GAGGACGAGACGTAGCACAC 60.179 60.000 0.00 0.00 41.37 3.82
2497 2587 3.226712 CGTAGCACACGCACGAAA 58.773 55.556 0.00 0.00 45.03 3.46
2498 2588 1.127817 CGTAGCACACGCACGAAAG 59.872 57.895 0.00 0.00 45.03 2.62
2499 2589 1.545614 CGTAGCACACGCACGAAAGT 61.546 55.000 0.00 0.00 45.03 2.66
2512 2602 3.673746 ACGAAAGTGATTGTGTGTGTG 57.326 42.857 0.00 0.00 46.97 3.82
2513 2603 3.006940 ACGAAAGTGATTGTGTGTGTGT 58.993 40.909 0.00 0.00 46.97 3.72
2514 2604 3.181511 ACGAAAGTGATTGTGTGTGTGTG 60.182 43.478 0.00 0.00 46.97 3.82
2515 2605 3.181511 CGAAAGTGATTGTGTGTGTGTGT 60.182 43.478 0.00 0.00 0.00 3.72
2516 2606 4.342772 GAAAGTGATTGTGTGTGTGTGTC 58.657 43.478 0.00 0.00 0.00 3.67
2517 2607 2.288666 AGTGATTGTGTGTGTGTGTCC 58.711 47.619 0.00 0.00 0.00 4.02
2518 2608 2.092968 AGTGATTGTGTGTGTGTGTCCT 60.093 45.455 0.00 0.00 0.00 3.85
2519 2609 2.032054 GTGATTGTGTGTGTGTGTCCTG 59.968 50.000 0.00 0.00 0.00 3.86
2520 2610 2.093235 TGATTGTGTGTGTGTGTCCTGA 60.093 45.455 0.00 0.00 0.00 3.86
2521 2611 2.022764 TTGTGTGTGTGTGTCCTGAG 57.977 50.000 0.00 0.00 0.00 3.35
2522 2612 1.190643 TGTGTGTGTGTGTCCTGAGA 58.809 50.000 0.00 0.00 0.00 3.27
2523 2613 1.762370 TGTGTGTGTGTGTCCTGAGAT 59.238 47.619 0.00 0.00 0.00 2.75
2524 2614 2.170397 TGTGTGTGTGTGTCCTGAGATT 59.830 45.455 0.00 0.00 0.00 2.40
2525 2615 2.802816 GTGTGTGTGTGTCCTGAGATTC 59.197 50.000 0.00 0.00 0.00 2.52
2526 2616 2.061773 GTGTGTGTGTCCTGAGATTCG 58.938 52.381 0.00 0.00 0.00 3.34
2527 2617 1.686587 TGTGTGTGTCCTGAGATTCGT 59.313 47.619 0.00 0.00 0.00 3.85
2528 2618 2.288213 TGTGTGTGTCCTGAGATTCGTC 60.288 50.000 0.00 0.00 0.00 4.20
2529 2619 1.960689 TGTGTGTCCTGAGATTCGTCA 59.039 47.619 0.00 0.00 0.00 4.35
2530 2620 2.364002 TGTGTGTCCTGAGATTCGTCAA 59.636 45.455 0.00 0.00 0.00 3.18
2531 2621 2.989840 GTGTGTCCTGAGATTCGTCAAG 59.010 50.000 0.00 0.00 0.00 3.02
2532 2622 1.996191 GTGTCCTGAGATTCGTCAAGC 59.004 52.381 0.00 0.00 0.00 4.01
2533 2623 1.895798 TGTCCTGAGATTCGTCAAGCT 59.104 47.619 0.00 0.00 0.00 3.74
2534 2624 2.266554 GTCCTGAGATTCGTCAAGCTG 58.733 52.381 0.00 0.00 0.00 4.24
2535 2625 1.895798 TCCTGAGATTCGTCAAGCTGT 59.104 47.619 0.00 0.00 0.00 4.40
2536 2626 2.300152 TCCTGAGATTCGTCAAGCTGTT 59.700 45.455 0.00 0.00 0.00 3.16
2537 2627 3.070018 CCTGAGATTCGTCAAGCTGTTT 58.930 45.455 0.00 0.00 0.00 2.83
2538 2628 3.499918 CCTGAGATTCGTCAAGCTGTTTT 59.500 43.478 0.00 0.00 0.00 2.43
2539 2629 4.377841 CCTGAGATTCGTCAAGCTGTTTTC 60.378 45.833 0.00 0.00 0.00 2.29
2540 2630 4.380531 TGAGATTCGTCAAGCTGTTTTCT 58.619 39.130 0.00 0.00 0.00 2.52
2541 2631 4.816385 TGAGATTCGTCAAGCTGTTTTCTT 59.184 37.500 0.00 0.00 0.00 2.52
2542 2632 5.296780 TGAGATTCGTCAAGCTGTTTTCTTT 59.703 36.000 0.00 0.00 0.00 2.52
2543 2633 6.136541 AGATTCGTCAAGCTGTTTTCTTTT 57.863 33.333 0.00 0.00 0.00 2.27
2544 2634 6.564328 AGATTCGTCAAGCTGTTTTCTTTTT 58.436 32.000 0.00 0.00 0.00 1.94
2545 2635 6.693113 AGATTCGTCAAGCTGTTTTCTTTTTC 59.307 34.615 0.00 0.00 0.00 2.29
2546 2636 4.668289 TCGTCAAGCTGTTTTCTTTTTCC 58.332 39.130 0.00 0.00 0.00 3.13
2547 2637 4.398044 TCGTCAAGCTGTTTTCTTTTTCCT 59.602 37.500 0.00 0.00 0.00 3.36
2548 2638 5.102313 CGTCAAGCTGTTTTCTTTTTCCTT 58.898 37.500 0.00 0.00 0.00 3.36
2549 2639 5.004726 CGTCAAGCTGTTTTCTTTTTCCTTG 59.995 40.000 0.00 0.00 0.00 3.61
2550 2640 5.869344 GTCAAGCTGTTTTCTTTTTCCTTGT 59.131 36.000 0.00 0.00 32.52 3.16
2551 2641 5.868801 TCAAGCTGTTTTCTTTTTCCTTGTG 59.131 36.000 0.00 0.00 32.52 3.33
2552 2642 5.659440 AGCTGTTTTCTTTTTCCTTGTGA 57.341 34.783 0.00 0.00 0.00 3.58
2553 2643 5.654497 AGCTGTTTTCTTTTTCCTTGTGAG 58.346 37.500 0.00 0.00 0.00 3.51
2554 2644 5.418840 AGCTGTTTTCTTTTTCCTTGTGAGA 59.581 36.000 0.00 0.00 0.00 3.27
2555 2645 6.071391 AGCTGTTTTCTTTTTCCTTGTGAGAA 60.071 34.615 0.00 0.00 0.00 2.87
2556 2646 6.589907 GCTGTTTTCTTTTTCCTTGTGAGAAA 59.410 34.615 0.00 0.00 35.29 2.52
2557 2647 7.278646 GCTGTTTTCTTTTTCCTTGTGAGAAAT 59.721 33.333 0.00 0.00 36.54 2.17
2558 2648 8.477984 TGTTTTCTTTTTCCTTGTGAGAAATG 57.522 30.769 0.00 0.00 36.54 2.32
2559 2649 8.310382 TGTTTTCTTTTTCCTTGTGAGAAATGA 58.690 29.630 0.00 0.00 36.54 2.57
2560 2650 8.811378 GTTTTCTTTTTCCTTGTGAGAAATGAG 58.189 33.333 0.00 0.00 36.54 2.90
2561 2651 7.645058 TTCTTTTTCCTTGTGAGAAATGAGT 57.355 32.000 0.00 0.00 33.45 3.41
2562 2652 7.645058 TCTTTTTCCTTGTGAGAAATGAGTT 57.355 32.000 0.00 0.00 33.45 3.01
2563 2653 8.066612 TCTTTTTCCTTGTGAGAAATGAGTTT 57.933 30.769 0.00 0.00 33.45 2.66
2564 2654 8.531146 TCTTTTTCCTTGTGAGAAATGAGTTTT 58.469 29.630 0.00 0.00 33.45 2.43
2565 2655 9.801873 CTTTTTCCTTGTGAGAAATGAGTTTTA 57.198 29.630 0.00 0.00 33.45 1.52
2567 2657 9.965824 TTTTCCTTGTGAGAAATGAGTTTTATC 57.034 29.630 0.00 0.00 36.33 1.75
2568 2658 8.690203 TTCCTTGTGAGAAATGAGTTTTATCA 57.310 30.769 0.00 0.00 41.87 2.15
2569 2659 8.690203 TCCTTGTGAGAAATGAGTTTTATCAA 57.310 30.769 0.00 0.00 44.67 2.57
2570 2660 8.786898 TCCTTGTGAGAAATGAGTTTTATCAAG 58.213 33.333 0.00 0.00 44.67 3.02
2571 2661 7.540055 CCTTGTGAGAAATGAGTTTTATCAAGC 59.460 37.037 0.00 0.00 44.67 4.01
2572 2662 7.750229 TGTGAGAAATGAGTTTTATCAAGCT 57.250 32.000 0.00 0.00 44.67 3.74
2573 2663 7.587629 TGTGAGAAATGAGTTTTATCAAGCTG 58.412 34.615 0.00 0.00 44.67 4.24
2574 2664 7.445096 TGTGAGAAATGAGTTTTATCAAGCTGA 59.555 33.333 0.00 0.00 44.67 4.26
2575 2665 8.457261 GTGAGAAATGAGTTTTATCAAGCTGAT 58.543 33.333 0.00 0.00 44.67 2.90
2576 2666 9.017509 TGAGAAATGAGTTTTATCAAGCTGATT 57.982 29.630 4.35 0.00 41.34 2.57
2577 2667 9.852091 GAGAAATGAGTTTTATCAAGCTGATTT 57.148 29.630 1.64 1.64 38.91 2.17
2619 2709 3.940209 TTTTTGGACTGCAATAGCCAG 57.060 42.857 0.00 0.00 41.13 4.85
2620 2710 1.176527 TTTGGACTGCAATAGCCAGC 58.823 50.000 0.00 0.00 41.13 4.85
2621 2711 1.026182 TTGGACTGCAATAGCCAGCG 61.026 55.000 0.00 0.00 41.13 5.18
2622 2712 1.153369 GGACTGCAATAGCCAGCGA 60.153 57.895 0.00 0.00 41.13 4.93
2623 2713 1.432270 GGACTGCAATAGCCAGCGAC 61.432 60.000 0.00 0.00 41.13 5.19
2624 2714 1.432270 GACTGCAATAGCCAGCGACC 61.432 60.000 0.00 0.00 41.13 4.79
2625 2715 2.511373 TGCAATAGCCAGCGACCG 60.511 61.111 0.00 0.00 41.13 4.79
2626 2716 2.511600 GCAATAGCCAGCGACCGT 60.512 61.111 0.00 0.00 33.58 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 3.766051 CCCAAAAAGCAGATTTAGGAGCT 59.234 43.478 4.53 0.00 39.37 4.09
281 282 7.725844 CAGGGAGCCAAATATCCTTAACTAAAT 59.274 37.037 0.00 0.00 35.80 1.40
295 296 2.397044 TTTTGTCCAGGGAGCCAAAT 57.603 45.000 5.31 0.00 0.00 2.32
725 730 2.017049 GATAGTCAAACCAAGCCGCAT 58.983 47.619 0.00 0.00 0.00 4.73
1715 1726 2.421877 AAGCACGCACGTAGCTGTCT 62.422 55.000 16.70 3.76 42.61 3.41
1716 1727 2.022129 AAGCACGCACGTAGCTGTC 61.022 57.895 16.70 0.00 42.61 3.51
1717 1728 2.029073 AAGCACGCACGTAGCTGT 59.971 55.556 16.70 7.96 42.61 4.40
1718 1729 2.471607 CAAGCACGCACGTAGCTG 59.528 61.111 16.70 9.89 42.61 4.24
1732 1743 1.743252 GGCAGAAGACGCCTCCAAG 60.743 63.158 0.00 0.00 46.56 3.61
1757 1768 3.866582 CCCGATGGACCTGCCTCC 61.867 72.222 0.00 0.00 37.63 4.30
1782 1816 0.249322 ACCACCACGACGACTTCAAG 60.249 55.000 0.00 0.00 0.00 3.02
1796 1830 3.124128 GCAGTTAGCTAAAACGTACCACC 59.876 47.826 7.99 0.00 41.15 4.61
1829 1868 1.251002 CGTACGTAAGAAATGACGCCG 59.749 52.381 7.22 0.00 42.81 6.46
1876 1915 2.447887 CGTGACTCTGATGCCACGC 61.448 63.158 11.55 0.00 44.24 5.34
1887 1926 0.974383 TTCTTCCTTCCCCGTGACTC 59.026 55.000 0.00 0.00 0.00 3.36
1902 1941 0.754472 TCCGTTCCGTGAACCTTCTT 59.246 50.000 10.07 0.00 39.14 2.52
1949 2003 5.680151 GCGAGCAAGGAAGAAAGATACTACT 60.680 44.000 0.00 0.00 0.00 2.57
1950 2004 4.504826 GCGAGCAAGGAAGAAAGATACTAC 59.495 45.833 0.00 0.00 0.00 2.73
1951 2005 4.441634 GGCGAGCAAGGAAGAAAGATACTA 60.442 45.833 0.00 0.00 0.00 1.82
1952 2006 3.526534 GCGAGCAAGGAAGAAAGATACT 58.473 45.455 0.00 0.00 0.00 2.12
1968 2042 1.003116 GATCACACATCATTGGCGAGC 60.003 52.381 0.00 0.00 0.00 5.03
1969 2043 1.259770 CGATCACACATCATTGGCGAG 59.740 52.381 0.00 0.00 0.00 5.03
1985 2059 2.159226 AGAACCGTGTCCTTGATCGATC 60.159 50.000 18.72 18.72 0.00 3.69
1992 2066 2.766313 TGATTCAGAACCGTGTCCTTG 58.234 47.619 0.00 0.00 0.00 3.61
2006 2080 3.531934 ATGACACGCTCTGATGATTCA 57.468 42.857 0.00 0.00 0.00 2.57
2007 2081 6.536731 AATTATGACACGCTCTGATGATTC 57.463 37.500 0.00 0.00 0.00 2.52
2008 2082 6.238566 CCAAATTATGACACGCTCTGATGATT 60.239 38.462 0.00 0.00 0.00 2.57
2010 2084 4.571984 CCAAATTATGACACGCTCTGATGA 59.428 41.667 0.00 0.00 0.00 2.92
2011 2085 4.787563 GCCAAATTATGACACGCTCTGATG 60.788 45.833 0.00 0.00 0.00 3.07
2015 2089 2.679837 CAGCCAAATTATGACACGCTCT 59.320 45.455 0.00 0.00 0.00 4.09
2028 2102 2.417243 GCAAATAACTCGGCAGCCAAAT 60.417 45.455 13.30 0.00 0.00 2.32
2036 2110 3.062234 GTCTACACAGCAAATAACTCGGC 59.938 47.826 0.00 0.00 0.00 5.54
2037 2111 3.303495 CGTCTACACAGCAAATAACTCGG 59.697 47.826 0.00 0.00 0.00 4.63
2038 2112 3.303495 CCGTCTACACAGCAAATAACTCG 59.697 47.826 0.00 0.00 0.00 4.18
2039 2113 3.617263 CCCGTCTACACAGCAAATAACTC 59.383 47.826 0.00 0.00 0.00 3.01
2040 2114 3.596214 CCCGTCTACACAGCAAATAACT 58.404 45.455 0.00 0.00 0.00 2.24
2041 2115 2.095372 GCCCGTCTACACAGCAAATAAC 59.905 50.000 0.00 0.00 0.00 1.89
2042 2116 2.352388 GCCCGTCTACACAGCAAATAA 58.648 47.619 0.00 0.00 0.00 1.40
2044 2118 1.019278 CGCCCGTCTACACAGCAAAT 61.019 55.000 0.00 0.00 0.00 2.32
2045 2119 1.666553 CGCCCGTCTACACAGCAAA 60.667 57.895 0.00 0.00 0.00 3.68
2046 2120 1.884075 ATCGCCCGTCTACACAGCAA 61.884 55.000 0.00 0.00 0.00 3.91
2048 2122 0.101759 TTATCGCCCGTCTACACAGC 59.898 55.000 0.00 0.00 0.00 4.40
2049 2123 1.133598 TGTTATCGCCCGTCTACACAG 59.866 52.381 0.00 0.00 0.00 3.66
2052 2126 5.005740 ACTATATGTTATCGCCCGTCTACA 58.994 41.667 0.00 0.00 0.00 2.74
2077 2151 0.368907 CGCGTGCCAACATGTACTAC 59.631 55.000 0.00 0.00 35.09 2.73
2078 2152 0.738063 CCGCGTGCCAACATGTACTA 60.738 55.000 4.92 0.00 35.09 1.82
2079 2153 2.032634 CCGCGTGCCAACATGTACT 61.033 57.895 4.92 0.00 35.09 2.73
2080 2154 1.015085 TACCGCGTGCCAACATGTAC 61.015 55.000 4.92 0.00 35.09 2.90
2081 2155 0.738063 CTACCGCGTGCCAACATGTA 60.738 55.000 4.92 0.00 35.09 2.29
2082 2156 2.031314 TACCGCGTGCCAACATGT 59.969 55.556 4.92 0.00 35.09 3.21
2118 2194 0.599204 ACACCGGCTATAAATCGCGG 60.599 55.000 6.13 0.00 0.00 6.46
2122 2198 4.620097 GCCTACCTACACCGGCTATAAATC 60.620 50.000 0.00 0.00 39.42 2.17
2131 2207 1.362717 CGATGCCTACCTACACCGG 59.637 63.158 0.00 0.00 0.00 5.28
2233 2323 4.148825 CTCGACTGGAAGGCCGGG 62.149 72.222 2.18 0.00 40.92 5.73
2236 2326 3.672295 CTGCCTCGACTGGAAGGCC 62.672 68.421 10.67 0.00 40.92 5.19
2238 2328 2.581354 CCTGCCTCGACTGGAAGG 59.419 66.667 3.34 3.34 45.92 3.46
2248 2338 0.969409 AAATGAAGCCTGCCTGCCTC 60.969 55.000 0.00 0.00 0.00 4.70
2249 2339 0.543646 AAAATGAAGCCTGCCTGCCT 60.544 50.000 0.00 0.00 0.00 4.75
2250 2340 0.322648 AAAAATGAAGCCTGCCTGCC 59.677 50.000 0.00 0.00 0.00 4.85
2251 2341 3.921257 AAAAATGAAGCCTGCCTGC 57.079 47.368 0.00 0.00 0.00 4.85
2412 2502 1.671054 CGGCCACCACTGTTACCAG 60.671 63.158 2.24 0.00 44.68 4.00
2413 2503 1.485294 ATCGGCCACCACTGTTACCA 61.485 55.000 2.24 0.00 0.00 3.25
2414 2504 1.024579 CATCGGCCACCACTGTTACC 61.025 60.000 2.24 0.00 0.00 2.85
2415 2505 0.036765 TCATCGGCCACCACTGTTAC 60.037 55.000 2.24 0.00 0.00 2.50
2416 2506 0.249120 CTCATCGGCCACCACTGTTA 59.751 55.000 2.24 0.00 0.00 2.41
2417 2507 1.003355 CTCATCGGCCACCACTGTT 60.003 57.895 2.24 0.00 0.00 3.16
2418 2508 2.217038 ACTCATCGGCCACCACTGT 61.217 57.895 2.24 0.00 0.00 3.55
2419 2509 1.742880 CACTCATCGGCCACCACTG 60.743 63.158 2.24 0.00 0.00 3.66
2420 2510 1.768684 AACACTCATCGGCCACCACT 61.769 55.000 2.24 0.00 0.00 4.00
2421 2511 0.889186 AAACACTCATCGGCCACCAC 60.889 55.000 2.24 0.00 0.00 4.16
2422 2512 0.888736 CAAACACTCATCGGCCACCA 60.889 55.000 2.24 0.00 0.00 4.17
2423 2513 1.875963 CAAACACTCATCGGCCACC 59.124 57.895 2.24 0.00 0.00 4.61
2424 2514 1.210155 GCAAACACTCATCGGCCAC 59.790 57.895 2.24 0.00 0.00 5.01
2425 2515 2.324330 CGCAAACACTCATCGGCCA 61.324 57.895 2.24 0.00 0.00 5.36
2426 2516 2.240612 GACGCAAACACTCATCGGCC 62.241 60.000 0.00 0.00 0.00 6.13
2427 2517 1.132640 GACGCAAACACTCATCGGC 59.867 57.895 0.00 0.00 0.00 5.54
2428 2518 1.416049 CGACGCAAACACTCATCGG 59.584 57.895 0.00 0.00 0.00 4.18
2429 2519 1.006825 TCCGACGCAAACACTCATCG 61.007 55.000 0.00 0.00 0.00 3.84
2430 2520 0.716108 CTCCGACGCAAACACTCATC 59.284 55.000 0.00 0.00 0.00 2.92
2431 2521 0.317160 TCTCCGACGCAAACACTCAT 59.683 50.000 0.00 0.00 0.00 2.90
2432 2522 0.596600 GTCTCCGACGCAAACACTCA 60.597 55.000 0.00 0.00 0.00 3.41
2433 2523 0.596600 TGTCTCCGACGCAAACACTC 60.597 55.000 0.00 0.00 34.95 3.51
2434 2524 0.033504 ATGTCTCCGACGCAAACACT 59.966 50.000 0.00 0.00 34.95 3.55
2435 2525 0.163788 CATGTCTCCGACGCAAACAC 59.836 55.000 0.00 0.00 34.95 3.32
2436 2526 0.948623 CCATGTCTCCGACGCAAACA 60.949 55.000 0.00 0.00 34.95 2.83
2437 2527 1.635663 CCCATGTCTCCGACGCAAAC 61.636 60.000 0.00 0.00 34.95 2.93
2438 2528 1.375396 CCCATGTCTCCGACGCAAA 60.375 57.895 0.00 0.00 34.95 3.68
2439 2529 2.107041 AACCCATGTCTCCGACGCAA 62.107 55.000 0.00 0.00 34.95 4.85
2440 2530 2.107041 AAACCCATGTCTCCGACGCA 62.107 55.000 0.00 0.00 34.95 5.24
2441 2531 0.953960 AAAACCCATGTCTCCGACGC 60.954 55.000 0.00 0.00 34.95 5.19
2442 2532 1.519408 AAAAACCCATGTCTCCGACG 58.481 50.000 0.00 0.00 34.95 5.12
2462 2552 1.608590 ACGTCTCGTCCTCGGTAAAAA 59.391 47.619 0.00 0.00 33.69 1.94
2463 2553 1.238439 ACGTCTCGTCCTCGGTAAAA 58.762 50.000 0.00 0.00 33.69 1.52
2464 2554 2.002586 CTACGTCTCGTCCTCGGTAAA 58.997 52.381 0.00 0.00 41.54 2.01
2465 2555 1.645034 CTACGTCTCGTCCTCGGTAA 58.355 55.000 0.00 0.00 41.54 2.85
2466 2556 0.807667 GCTACGTCTCGTCCTCGGTA 60.808 60.000 0.00 0.00 41.54 4.02
2467 2557 2.105466 GCTACGTCTCGTCCTCGGT 61.105 63.158 0.00 0.00 41.54 4.69
2468 2558 2.104859 TGCTACGTCTCGTCCTCGG 61.105 63.158 0.00 0.00 41.54 4.63
2469 2559 1.060622 GTGCTACGTCTCGTCCTCG 59.939 63.158 0.00 0.00 41.54 4.63
2470 2560 0.179194 GTGTGCTACGTCTCGTCCTC 60.179 60.000 0.00 0.00 41.54 3.71
2471 2561 1.874562 GTGTGCTACGTCTCGTCCT 59.125 57.895 0.00 0.00 41.54 3.85
2472 2562 4.454554 GTGTGCTACGTCTCGTCC 57.545 61.111 0.00 0.00 41.54 4.79
2481 2571 0.111266 CACTTTCGTGCGTGTGCTAC 60.111 55.000 0.00 0.00 43.34 3.58
2482 2572 0.249114 TCACTTTCGTGCGTGTGCTA 60.249 50.000 0.00 0.00 43.34 3.49
2483 2573 0.880278 ATCACTTTCGTGCGTGTGCT 60.880 50.000 0.00 0.00 43.34 4.40
2484 2574 0.041312 AATCACTTTCGTGCGTGTGC 60.041 50.000 0.00 0.00 40.99 4.57
2485 2575 1.003972 ACAATCACTTTCGTGCGTGTG 60.004 47.619 0.00 0.00 40.99 3.82
2486 2576 1.003972 CACAATCACTTTCGTGCGTGT 60.004 47.619 0.00 0.00 40.99 4.49
2487 2577 1.003972 ACACAATCACTTTCGTGCGTG 60.004 47.619 0.00 0.00 40.99 5.34
2488 2578 1.003972 CACACAATCACTTTCGTGCGT 60.004 47.619 0.00 0.00 40.99 5.24
2489 2579 1.003972 ACACACAATCACTTTCGTGCG 60.004 47.619 0.00 0.00 40.99 5.34
2490 2580 2.223249 ACACACACAATCACTTTCGTGC 60.223 45.455 0.00 0.00 40.99 5.34
2491 2581 3.181511 ACACACACACAATCACTTTCGTG 60.182 43.478 0.00 0.00 42.59 4.35
2492 2582 3.006940 ACACACACACAATCACTTTCGT 58.993 40.909 0.00 0.00 0.00 3.85
2493 2583 3.181511 ACACACACACACAATCACTTTCG 60.182 43.478 0.00 0.00 0.00 3.46
2494 2584 4.342772 GACACACACACACAATCACTTTC 58.657 43.478 0.00 0.00 0.00 2.62
2495 2585 3.128589 GGACACACACACACAATCACTTT 59.871 43.478 0.00 0.00 0.00 2.66
2496 2586 2.682856 GGACACACACACACAATCACTT 59.317 45.455 0.00 0.00 0.00 3.16
2497 2587 2.092968 AGGACACACACACACAATCACT 60.093 45.455 0.00 0.00 0.00 3.41
2498 2588 2.032054 CAGGACACACACACACAATCAC 59.968 50.000 0.00 0.00 0.00 3.06
2499 2589 2.093235 TCAGGACACACACACACAATCA 60.093 45.455 0.00 0.00 0.00 2.57
2500 2590 2.545526 CTCAGGACACACACACACAATC 59.454 50.000 0.00 0.00 0.00 2.67
2501 2591 2.170397 TCTCAGGACACACACACACAAT 59.830 45.455 0.00 0.00 0.00 2.71
2502 2592 1.552792 TCTCAGGACACACACACACAA 59.447 47.619 0.00 0.00 0.00 3.33
2503 2593 1.190643 TCTCAGGACACACACACACA 58.809 50.000 0.00 0.00 0.00 3.72
2504 2594 2.533266 ATCTCAGGACACACACACAC 57.467 50.000 0.00 0.00 0.00 3.82
2505 2595 2.545742 CGAATCTCAGGACACACACACA 60.546 50.000 0.00 0.00 0.00 3.72
2506 2596 2.061773 CGAATCTCAGGACACACACAC 58.938 52.381 0.00 0.00 0.00 3.82
2507 2597 1.686587 ACGAATCTCAGGACACACACA 59.313 47.619 0.00 0.00 0.00 3.72
2508 2598 2.288213 TGACGAATCTCAGGACACACAC 60.288 50.000 0.00 0.00 0.00 3.82
2509 2599 1.960689 TGACGAATCTCAGGACACACA 59.039 47.619 0.00 0.00 0.00 3.72
2510 2600 2.724977 TGACGAATCTCAGGACACAC 57.275 50.000 0.00 0.00 0.00 3.82
2511 2601 2.610479 GCTTGACGAATCTCAGGACACA 60.610 50.000 0.00 0.00 0.00 3.72
2512 2602 1.996191 GCTTGACGAATCTCAGGACAC 59.004 52.381 0.00 0.00 0.00 3.67
2513 2603 1.895798 AGCTTGACGAATCTCAGGACA 59.104 47.619 0.00 0.00 0.00 4.02
2514 2604 2.266554 CAGCTTGACGAATCTCAGGAC 58.733 52.381 0.00 0.00 0.00 3.85
2515 2605 1.895798 ACAGCTTGACGAATCTCAGGA 59.104 47.619 0.00 0.00 0.00 3.86
2516 2606 2.376808 ACAGCTTGACGAATCTCAGG 57.623 50.000 0.00 0.00 0.00 3.86
2517 2607 4.450419 AGAAAACAGCTTGACGAATCTCAG 59.550 41.667 0.00 0.00 0.00 3.35
2518 2608 4.380531 AGAAAACAGCTTGACGAATCTCA 58.619 39.130 0.00 0.00 0.00 3.27
2519 2609 4.999751 AGAAAACAGCTTGACGAATCTC 57.000 40.909 0.00 0.00 0.00 2.75
2520 2610 5.757850 AAAGAAAACAGCTTGACGAATCT 57.242 34.783 0.00 0.00 0.00 2.40
2521 2611 6.074835 GGAAAAAGAAAACAGCTTGACGAATC 60.075 38.462 0.00 0.00 0.00 2.52
2522 2612 5.748630 GGAAAAAGAAAACAGCTTGACGAAT 59.251 36.000 0.00 0.00 0.00 3.34
2523 2613 5.099575 GGAAAAAGAAAACAGCTTGACGAA 58.900 37.500 0.00 0.00 0.00 3.85
2524 2614 4.398044 AGGAAAAAGAAAACAGCTTGACGA 59.602 37.500 0.00 0.00 0.00 4.20
2525 2615 4.672409 AGGAAAAAGAAAACAGCTTGACG 58.328 39.130 0.00 0.00 0.00 4.35
2526 2616 5.869344 ACAAGGAAAAAGAAAACAGCTTGAC 59.131 36.000 0.00 0.00 0.00 3.18
2527 2617 5.868801 CACAAGGAAAAAGAAAACAGCTTGA 59.131 36.000 0.00 0.00 0.00 3.02
2528 2618 5.868801 TCACAAGGAAAAAGAAAACAGCTTG 59.131 36.000 0.00 0.00 0.00 4.01
2529 2619 6.036577 TCACAAGGAAAAAGAAAACAGCTT 57.963 33.333 0.00 0.00 0.00 3.74
2530 2620 5.418840 TCTCACAAGGAAAAAGAAAACAGCT 59.581 36.000 0.00 0.00 0.00 4.24
2531 2621 5.650543 TCTCACAAGGAAAAAGAAAACAGC 58.349 37.500 0.00 0.00 0.00 4.40
2532 2622 8.598075 CATTTCTCACAAGGAAAAAGAAAACAG 58.402 33.333 0.00 0.00 38.87 3.16
2533 2623 8.310382 TCATTTCTCACAAGGAAAAAGAAAACA 58.690 29.630 0.00 0.00 38.87 2.83
2534 2624 8.702163 TCATTTCTCACAAGGAAAAAGAAAAC 57.298 30.769 0.00 0.00 38.87 2.43
2535 2625 8.531146 ACTCATTTCTCACAAGGAAAAAGAAAA 58.469 29.630 0.00 0.00 38.87 2.29
2536 2626 8.066612 ACTCATTTCTCACAAGGAAAAAGAAA 57.933 30.769 0.00 0.00 39.50 2.52
2537 2627 7.645058 ACTCATTTCTCACAAGGAAAAAGAA 57.355 32.000 0.00 0.00 36.47 2.52
2538 2628 7.645058 AACTCATTTCTCACAAGGAAAAAGA 57.355 32.000 0.00 0.00 36.47 2.52
2539 2629 8.707938 AAAACTCATTTCTCACAAGGAAAAAG 57.292 30.769 0.00 0.00 36.47 2.27
2541 2631 9.965824 GATAAAACTCATTTCTCACAAGGAAAA 57.034 29.630 0.00 0.00 36.47 2.29
2542 2632 9.130661 TGATAAAACTCATTTCTCACAAGGAAA 57.869 29.630 0.00 0.00 37.15 3.13
2543 2633 8.690203 TGATAAAACTCATTTCTCACAAGGAA 57.310 30.769 0.00 0.00 31.40 3.36
2544 2634 8.690203 TTGATAAAACTCATTTCTCACAAGGA 57.310 30.769 0.00 0.00 34.84 3.36
2545 2635 7.540055 GCTTGATAAAACTCATTTCTCACAAGG 59.460 37.037 0.00 0.00 34.84 3.61
2546 2636 8.295288 AGCTTGATAAAACTCATTTCTCACAAG 58.705 33.333 0.00 0.00 34.84 3.16
2547 2637 8.077991 CAGCTTGATAAAACTCATTTCTCACAA 58.922 33.333 0.00 0.00 34.84 3.33
2548 2638 7.445096 TCAGCTTGATAAAACTCATTTCTCACA 59.555 33.333 0.00 0.00 34.84 3.58
2549 2639 7.810658 TCAGCTTGATAAAACTCATTTCTCAC 58.189 34.615 0.00 0.00 34.84 3.51
2550 2640 7.984422 TCAGCTTGATAAAACTCATTTCTCA 57.016 32.000 0.00 0.00 33.69 3.27
2551 2641 9.852091 AAATCAGCTTGATAAAACTCATTTCTC 57.148 29.630 0.00 0.00 35.76 2.87
2599 2689 2.029110 GCTGGCTATTGCAGTCCAAAAA 60.029 45.455 0.66 0.00 41.91 1.94
2600 2690 1.545582 GCTGGCTATTGCAGTCCAAAA 59.454 47.619 0.66 0.00 41.91 2.44
2601 2691 1.176527 GCTGGCTATTGCAGTCCAAA 58.823 50.000 0.66 0.00 41.91 3.28
2602 2692 1.026182 CGCTGGCTATTGCAGTCCAA 61.026 55.000 0.66 0.00 41.91 3.53
2603 2693 1.450134 CGCTGGCTATTGCAGTCCA 60.450 57.895 0.66 0.00 41.91 4.02
2604 2694 1.153369 TCGCTGGCTATTGCAGTCC 60.153 57.895 0.66 0.00 41.91 3.85
2605 2695 1.432270 GGTCGCTGGCTATTGCAGTC 61.432 60.000 0.66 0.00 41.91 3.51
2606 2696 1.450312 GGTCGCTGGCTATTGCAGT 60.450 57.895 0.66 0.00 41.91 4.40
2607 2697 2.528743 CGGTCGCTGGCTATTGCAG 61.529 63.158 0.66 0.00 41.91 4.41
2608 2698 2.511373 CGGTCGCTGGCTATTGCA 60.511 61.111 0.66 0.00 41.91 4.08
2609 2699 2.511600 ACGGTCGCTGGCTATTGC 60.512 61.111 0.00 0.00 38.76 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.