Multiple sequence alignment - TraesCS5A01G326100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G326100 chr5A 100.000 4794 0 0 1 4794 536681411 536676618 0.000000e+00 8853.0
1 TraesCS5A01G326100 chr5A 97.143 175 3 2 2825 2999 689934679 689934851 1.300000e-75 294.0
2 TraesCS5A01G326100 chr5A 96.067 178 7 0 2819 2996 547788981 547789158 1.690000e-74 291.0
3 TraesCS5A01G326100 chr5A 95.833 72 2 1 625 696 672756309 672756239 1.090000e-21 115.0
4 TraesCS5A01G326100 chr5A 76.000 150 32 4 4320 4467 382073059 382073206 1.850000e-09 75.0
5 TraesCS5A01G326100 chr5B 94.481 2102 84 19 753 2831 510732883 510730791 0.000000e+00 3210.0
6 TraesCS5A01G326100 chr5B 94.440 1151 39 10 2992 4127 510730792 510729652 0.000000e+00 1748.0
7 TraesCS5A01G326100 chr5B 86.910 466 56 4 40 505 510734695 510734235 7.110000e-143 518.0
8 TraesCS5A01G326100 chr5B 92.780 277 19 1 4519 4794 510728294 510728018 2.690000e-107 399.0
9 TraesCS5A01G326100 chr5D 94.900 1706 77 8 753 2456 423235406 423233709 0.000000e+00 2660.0
10 TraesCS5A01G326100 chr5D 95.276 1143 38 4 2992 4127 423233595 423232462 0.000000e+00 1797.0
11 TraesCS5A01G326100 chr5D 89.286 476 48 3 31 505 423242768 423242295 1.150000e-165 593.0
12 TraesCS5A01G326100 chr5D 90.435 345 21 12 4134 4475 423230015 423229680 1.220000e-120 444.0
13 TraesCS5A01G326100 chr5D 88.621 290 32 1 4495 4783 423229566 423229277 7.630000e-93 351.0
14 TraesCS5A01G326100 chr5D 89.231 130 6 1 2702 2831 423233715 423233594 6.420000e-34 156.0
15 TraesCS5A01G326100 chr5D 81.667 120 17 5 4378 4494 513645938 513646055 1.420000e-15 95.3
16 TraesCS5A01G326100 chr5D 80.851 94 16 2 4320 4412 288550315 288550407 6.660000e-09 73.1
17 TraesCS5A01G326100 chr7A 98.256 172 2 1 2822 2993 689894999 689895169 2.800000e-77 300.0
18 TraesCS5A01G326100 chr7A 97.159 176 4 1 2823 2997 61776997 61776822 3.630000e-76 296.0
19 TraesCS5A01G326100 chr6B 96.648 179 5 1 2828 3006 114057035 114057212 3.630000e-76 296.0
20 TraesCS5A01G326100 chr6B 81.731 104 15 3 4323 4425 19906127 19906227 3.070000e-12 84.2
21 TraesCS5A01G326100 chr1B 97.143 175 5 0 2819 2993 520523741 520523915 3.630000e-76 296.0
22 TraesCS5A01G326100 chr1B 98.462 65 1 0 632 696 413206654 413206718 1.090000e-21 115.0
23 TraesCS5A01G326100 chr1A 96.629 178 4 2 2826 3003 576665491 576665666 1.300000e-75 294.0
24 TraesCS5A01G326100 chr4A 97.126 174 4 1 2822 2995 184849991 184850163 4.690000e-75 292.0
25 TraesCS5A01G326100 chr4A 98.462 65 1 0 632 696 655164413 655164349 1.090000e-21 115.0
26 TraesCS5A01G326100 chr4A 98.413 63 0 1 634 696 63014046 63013985 5.070000e-20 110.0
27 TraesCS5A01G326100 chr2A 96.591 176 6 0 2824 2999 279781754 279781929 4.690000e-75 292.0
28 TraesCS5A01G326100 chr3A 80.000 175 28 7 4325 4495 8796891 8797062 6.520000e-24 122.0
29 TraesCS5A01G326100 chr7B 98.462 65 1 0 632 696 246380360 246380296 1.090000e-21 115.0
30 TraesCS5A01G326100 chr7B 98.462 65 1 0 632 696 656511754 656511818 1.090000e-21 115.0
31 TraesCS5A01G326100 chr7B 96.923 65 2 0 632 696 548480095 548480031 5.070000e-20 110.0
32 TraesCS5A01G326100 chr4B 98.462 65 1 0 632 696 650728034 650727970 1.090000e-21 115.0
33 TraesCS5A01G326100 chr4B 78.344 157 28 6 4323 4475 521734982 521734828 3.950000e-16 97.1
34 TraesCS5A01G326100 chr7D 79.375 160 27 5 4337 4493 541380881 541380725 1.820000e-19 108.0
35 TraesCS5A01G326100 chr6A 95.455 66 3 0 630 695 579989428 579989493 6.560000e-19 106.0
36 TraesCS5A01G326100 chrUn 81.731 104 15 3 4323 4425 320357055 320357155 3.070000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G326100 chr5A 536676618 536681411 4793 True 8853.00 8853 100.00000 1 4794 1 chr5A.!!$R1 4793
1 TraesCS5A01G326100 chr5B 510728018 510734695 6677 True 1468.75 3210 92.15275 40 4794 4 chr5B.!!$R1 4754
2 TraesCS5A01G326100 chr5D 423229277 423235406 6129 True 1081.60 2660 91.69260 753 4783 5 chr5D.!!$R2 4030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 1849 0.038744 AGGTTGTTCCCATCAGCCAG 59.961 55.0 0.00 0.0 38.37 4.85 F
740 1982 0.464036 AGCCTGACTTTCGACACACA 59.536 50.0 0.00 0.0 0.00 3.72 F
777 2019 0.681733 TGCCGAGTCAGCTTCTTCTT 59.318 50.0 0.00 0.0 0.00 2.52 F
2233 3483 0.828022 TATTCACTGATTCGGCGGGT 59.172 50.0 7.21 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 3257 0.182537 CCACCAACAGGTTCTCCACA 59.817 55.000 0.0 0.0 31.84 4.17 R
2010 3258 0.182775 ACCACCAACAGGTTCTCCAC 59.817 55.000 0.0 0.0 35.33 4.02 R
2699 3957 1.867233 AGTAAACAGCAAGACAGCACG 59.133 47.619 0.0 0.0 36.85 5.34 R
4092 5369 0.875059 AAGTACCTCGCAAGCAAAGC 59.125 50.000 0.0 0.0 37.18 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.012998 CGACGCGAATGTGCATGAG 60.013 57.895 15.93 0.00 34.15 2.90
54 55 1.731700 GCGAATGTGCATGAGCCAT 59.268 52.632 0.00 0.00 41.13 4.40
60 61 4.670992 CGAATGTGCATGAGCCATATTAGC 60.671 45.833 0.00 0.00 41.13 3.09
62 63 2.158638 TGTGCATGAGCCATATTAGCCA 60.159 45.455 0.00 0.00 41.13 4.75
65 66 4.021719 GTGCATGAGCCATATTAGCCAATT 60.022 41.667 0.00 0.00 41.13 2.32
67 68 5.774184 TGCATGAGCCATATTAGCCAATTAA 59.226 36.000 0.00 0.00 41.13 1.40
76 77 7.095523 GCCATATTAGCCAATTAATGTGCAAAG 60.096 37.037 10.93 0.00 33.39 2.77
97 98 2.989166 GTTTGCAGCCAATAAGAGCAAC 59.011 45.455 0.00 0.00 43.94 4.17
98 99 2.205022 TGCAGCCAATAAGAGCAACT 57.795 45.000 0.00 0.00 31.42 3.16
104 105 2.819608 GCCAATAAGAGCAACTCAACCA 59.180 45.455 0.00 0.00 32.06 3.67
106 107 4.261994 GCCAATAAGAGCAACTCAACCAAA 60.262 41.667 0.00 0.00 32.06 3.28
109 110 6.587608 CCAATAAGAGCAACTCAACCAAATTC 59.412 38.462 0.00 0.00 32.06 2.17
115 116 5.842907 AGCAACTCAACCAAATTCTTTACC 58.157 37.500 0.00 0.00 0.00 2.85
162 163 2.951457 TCGTGTTCGCTTCCATATCA 57.049 45.000 0.00 0.00 36.96 2.15
163 164 2.536365 TCGTGTTCGCTTCCATATCAC 58.464 47.619 0.00 0.00 36.96 3.06
190 191 8.939929 TGAAAATACACATAAGAAGCTCTCTTG 58.060 33.333 16.59 8.05 44.47 3.02
207 208 5.491070 TCTCTTGACATATGGAAGTGTTGG 58.509 41.667 7.80 0.93 0.00 3.77
223 224 1.131638 TTGGCCTAAGAGATGCGGAT 58.868 50.000 3.32 0.00 0.00 4.18
226 227 1.606737 GGCCTAAGAGATGCGGATGAC 60.607 57.143 0.00 0.00 0.00 3.06
230 231 2.996249 AAGAGATGCGGATGACACAT 57.004 45.000 0.00 0.00 0.00 3.21
232 233 1.202615 AGAGATGCGGATGACACATGG 60.203 52.381 0.00 0.00 0.00 3.66
242 243 0.536233 TGACACATGGGTTTGTCCGG 60.536 55.000 0.00 0.00 41.31 5.14
257 258 2.232941 TGTCCGGAAAGTAGTCATGGAC 59.767 50.000 5.23 1.66 41.49 4.02
261 262 2.163815 CGGAAAGTAGTCATGGACGAGT 59.836 50.000 0.00 0.00 37.67 4.18
271 272 3.096852 TCATGGACGAGTTGGTCATAGT 58.903 45.455 0.00 0.00 38.70 2.12
275 276 3.119245 TGGACGAGTTGGTCATAGTTAGC 60.119 47.826 0.00 0.00 38.70 3.09
276 277 3.130693 GGACGAGTTGGTCATAGTTAGCT 59.869 47.826 0.00 0.00 38.70 3.32
280 281 4.929808 CGAGTTGGTCATAGTTAGCTGTTT 59.070 41.667 0.00 0.00 0.00 2.83
281 282 5.062308 CGAGTTGGTCATAGTTAGCTGTTTC 59.938 44.000 0.00 0.00 0.00 2.78
283 284 4.530710 TGGTCATAGTTAGCTGTTTCGT 57.469 40.909 0.00 0.00 0.00 3.85
290 291 7.277098 GTCATAGTTAGCTGTTTCGTTCCATAA 59.723 37.037 0.00 0.00 0.00 1.90
299 300 6.687105 GCTGTTTCGTTCCATAATATTCACAC 59.313 38.462 0.00 0.00 0.00 3.82
301 302 5.398176 TTCGTTCCATAATATTCACACGC 57.602 39.130 0.00 0.00 0.00 5.34
303 304 3.807622 CGTTCCATAATATTCACACGCCT 59.192 43.478 0.00 0.00 0.00 5.52
305 306 5.220777 CGTTCCATAATATTCACACGCCTTT 60.221 40.000 0.00 0.00 0.00 3.11
336 337 3.618351 CTGGATGCTTCCTCTTCATGTT 58.382 45.455 18.67 0.00 43.07 2.71
338 339 4.012374 TGGATGCTTCCTCTTCATGTTTC 58.988 43.478 18.67 0.00 43.07 2.78
347 348 4.712337 TCCTCTTCATGTTTCTCTCTACCC 59.288 45.833 0.00 0.00 0.00 3.69
348 349 4.467795 CCTCTTCATGTTTCTCTCTACCCA 59.532 45.833 0.00 0.00 0.00 4.51
350 351 6.227298 TCTTCATGTTTCTCTCTACCCATC 57.773 41.667 0.00 0.00 0.00 3.51
356 357 5.734720 TGTTTCTCTCTACCCATCATTCAC 58.265 41.667 0.00 0.00 0.00 3.18
357 358 5.485353 TGTTTCTCTCTACCCATCATTCACT 59.515 40.000 0.00 0.00 0.00 3.41
362 363 4.962362 TCTCTACCCATCATTCACTTAGCA 59.038 41.667 0.00 0.00 0.00 3.49
368 369 5.105635 ACCCATCATTCACTTAGCAACAATG 60.106 40.000 0.00 0.00 0.00 2.82
443 444 0.656259 CGAAGTATCCTCGACGAGCA 59.344 55.000 19.55 4.84 0.00 4.26
466 467 5.663795 AGCTCATCTACATAAATTGTGCG 57.336 39.130 0.00 0.00 39.48 5.34
477 478 6.389091 ACATAAATTGTGCGATCAAACACAT 58.611 32.000 12.42 3.27 45.59 3.21
512 1133 9.265862 TGATTAAAACCCATGAATTAGATGGTT 57.734 29.630 12.79 5.88 39.08 3.67
514 1135 5.343307 AAACCCATGAATTAGATGGTTGC 57.657 39.130 12.79 0.00 39.08 4.17
517 1138 3.319972 CCCATGAATTAGATGGTTGCCAG 59.680 47.826 12.79 0.00 39.08 4.85
519 1140 3.084536 TGAATTAGATGGTTGCCAGCA 57.915 42.857 6.19 0.00 43.12 4.41
525 1146 1.228644 ATGGTTGCCAGCAAGAGCA 60.229 52.632 5.07 1.81 45.49 4.26
536 1157 1.101331 GCAAGAGCATGGAAAGAGGG 58.899 55.000 0.00 0.00 41.58 4.30
556 1178 2.229062 GGAAAACTTCCTTGGTGCTAGC 59.771 50.000 8.10 8.10 46.57 3.42
557 1179 2.959465 AAACTTCCTTGGTGCTAGCT 57.041 45.000 17.23 0.00 0.00 3.32
558 1180 4.324267 GAAAACTTCCTTGGTGCTAGCTA 58.676 43.478 17.23 0.00 0.00 3.32
560 1182 4.576330 AACTTCCTTGGTGCTAGCTAAT 57.424 40.909 17.23 0.00 0.00 1.73
584 1206 0.673644 CGAGGTTACAGGGGCTTGTG 60.674 60.000 5.63 0.00 32.56 3.33
586 1208 0.110486 AGGTTACAGGGGCTTGTGTG 59.890 55.000 5.63 0.00 32.56 3.82
587 1209 1.524008 GGTTACAGGGGCTTGTGTGC 61.524 60.000 5.63 0.00 32.56 4.57
588 1210 0.821711 GTTACAGGGGCTTGTGTGCA 60.822 55.000 5.63 0.00 32.56 4.57
591 1833 3.501911 AGGGGCTTGTGTGCAGGT 61.502 61.111 0.00 0.00 34.04 4.00
593 1835 2.730094 GGGCTTGTGTGCAGGTTG 59.270 61.111 0.00 0.00 34.04 3.77
594 1836 2.127232 GGGCTTGTGTGCAGGTTGT 61.127 57.895 0.00 0.00 34.04 3.32
596 1838 0.249031 GGCTTGTGTGCAGGTTGTTC 60.249 55.000 0.00 0.00 34.04 3.18
606 1848 0.251297 CAGGTTGTTCCCATCAGCCA 60.251 55.000 0.00 0.00 38.37 4.75
607 1849 0.038744 AGGTTGTTCCCATCAGCCAG 59.961 55.000 0.00 0.00 38.37 4.85
611 1853 1.133181 TGTTCCCATCAGCCAGGTCA 61.133 55.000 0.00 0.00 0.00 4.02
613 1855 0.548031 TTCCCATCAGCCAGGTCATC 59.452 55.000 0.00 0.00 0.00 2.92
614 1856 1.227764 CCCATCAGCCAGGTCATCG 60.228 63.158 0.00 0.00 0.00 3.84
615 1857 1.689243 CCCATCAGCCAGGTCATCGA 61.689 60.000 0.00 0.00 0.00 3.59
617 1859 1.202734 CCATCAGCCAGGTCATCGATT 60.203 52.381 0.00 0.00 0.00 3.34
619 1861 2.787473 TCAGCCAGGTCATCGATTTT 57.213 45.000 0.00 0.00 0.00 1.82
620 1862 2.632377 TCAGCCAGGTCATCGATTTTC 58.368 47.619 0.00 0.00 0.00 2.29
621 1863 1.328680 CAGCCAGGTCATCGATTTTCG 59.671 52.381 0.00 0.00 42.10 3.46
622 1864 1.066143 AGCCAGGTCATCGATTTTCGT 60.066 47.619 0.00 0.00 41.35 3.85
623 1865 1.327764 GCCAGGTCATCGATTTTCGTC 59.672 52.381 0.00 0.00 41.35 4.20
624 1866 2.616960 CCAGGTCATCGATTTTCGTCA 58.383 47.619 0.00 0.00 41.35 4.35
625 1867 3.000041 CCAGGTCATCGATTTTCGTCAA 59.000 45.455 0.00 0.00 41.35 3.18
626 1868 3.623060 CCAGGTCATCGATTTTCGTCAAT 59.377 43.478 0.00 0.00 41.35 2.57
627 1869 4.494690 CCAGGTCATCGATTTTCGTCAATG 60.495 45.833 0.00 0.00 41.35 2.82
628 1870 3.623060 AGGTCATCGATTTTCGTCAATGG 59.377 43.478 0.00 0.00 41.35 3.16
629 1871 3.354397 GTCATCGATTTTCGTCAATGGC 58.646 45.455 0.00 0.00 41.35 4.40
630 1872 3.006247 TCATCGATTTTCGTCAATGGCA 58.994 40.909 0.00 0.00 41.35 4.92
631 1873 3.627123 TCATCGATTTTCGTCAATGGCAT 59.373 39.130 0.00 0.00 41.35 4.40
632 1874 4.096231 TCATCGATTTTCGTCAATGGCATT 59.904 37.500 6.96 6.96 41.35 3.56
633 1875 4.433186 TCGATTTTCGTCAATGGCATTT 57.567 36.364 10.65 0.00 41.35 2.32
634 1876 4.804108 TCGATTTTCGTCAATGGCATTTT 58.196 34.783 10.65 0.00 41.35 1.82
635 1877 5.226396 TCGATTTTCGTCAATGGCATTTTT 58.774 33.333 10.65 0.00 41.35 1.94
692 1934 8.566260 AGAGCAAGATCATTTACATAAGAATGC 58.434 33.333 0.00 0.00 36.50 3.56
693 1935 8.229253 AGCAAGATCATTTACATAAGAATGCA 57.771 30.769 0.00 0.00 36.50 3.96
694 1936 8.350722 AGCAAGATCATTTACATAAGAATGCAG 58.649 33.333 0.00 0.00 36.50 4.41
695 1937 8.347771 GCAAGATCATTTACATAAGAATGCAGA 58.652 33.333 0.00 0.00 36.50 4.26
698 1940 9.788889 AGATCATTTACATAAGAATGCAGATCA 57.211 29.630 0.00 0.00 36.50 2.92
712 1954 9.788889 AGAATGCAGATCATTTACATAAGATCA 57.211 29.630 0.00 0.00 44.95 2.92
716 1958 8.789762 TGCAGATCATTTACATAAGATCAATGG 58.210 33.333 11.46 0.00 39.39 3.16
717 1959 7.754027 GCAGATCATTTACATAAGATCAATGGC 59.246 37.037 11.46 0.00 39.39 4.40
718 1960 8.789762 CAGATCATTTACATAAGATCAATGGCA 58.210 33.333 11.46 0.00 39.39 4.92
719 1961 8.790718 AGATCATTTACATAAGATCAATGGCAC 58.209 33.333 11.46 0.94 39.39 5.01
720 1962 8.701908 ATCATTTACATAAGATCAATGGCACT 57.298 30.769 11.46 0.00 0.00 4.40
721 1963 9.797642 ATCATTTACATAAGATCAATGGCACTA 57.202 29.630 11.46 0.00 0.00 2.74
722 1964 9.276590 TCATTTACATAAGATCAATGGCACTAG 57.723 33.333 11.46 0.00 0.00 2.57
723 1965 7.496529 TTTACATAAGATCAATGGCACTAGC 57.503 36.000 11.46 0.00 41.10 3.42
734 1976 3.814577 GCACTAGCCTGACTTTCGA 57.185 52.632 0.00 0.00 33.58 3.71
735 1977 1.351153 GCACTAGCCTGACTTTCGAC 58.649 55.000 0.00 0.00 33.58 4.20
736 1978 1.336887 GCACTAGCCTGACTTTCGACA 60.337 52.381 0.00 0.00 33.58 4.35
737 1979 2.329379 CACTAGCCTGACTTTCGACAC 58.671 52.381 0.00 0.00 0.00 3.67
738 1980 1.961394 ACTAGCCTGACTTTCGACACA 59.039 47.619 0.00 0.00 0.00 3.72
739 1981 2.288273 ACTAGCCTGACTTTCGACACAC 60.288 50.000 0.00 0.00 0.00 3.82
740 1982 0.464036 AGCCTGACTTTCGACACACA 59.536 50.000 0.00 0.00 0.00 3.72
741 1983 1.134521 AGCCTGACTTTCGACACACAA 60.135 47.619 0.00 0.00 0.00 3.33
742 1984 1.668751 GCCTGACTTTCGACACACAAA 59.331 47.619 0.00 0.00 0.00 2.83
743 1985 2.096819 GCCTGACTTTCGACACACAAAA 59.903 45.455 0.00 0.00 0.00 2.44
744 1986 3.680789 CCTGACTTTCGACACACAAAAC 58.319 45.455 0.00 0.00 0.00 2.43
745 1987 3.342269 CTGACTTTCGACACACAAAACG 58.658 45.455 0.00 0.00 0.00 3.60
746 1988 2.994578 TGACTTTCGACACACAAAACGA 59.005 40.909 0.00 0.00 0.00 3.85
747 1989 3.061563 TGACTTTCGACACACAAAACGAG 59.938 43.478 0.00 0.00 36.22 4.18
748 1990 3.255725 ACTTTCGACACACAAAACGAGA 58.744 40.909 0.00 0.00 36.22 4.04
749 1991 3.061697 ACTTTCGACACACAAAACGAGAC 59.938 43.478 0.00 0.00 36.22 3.36
750 1992 1.193644 TCGACACACAAAACGAGACG 58.806 50.000 0.00 0.00 0.00 4.18
751 1993 0.918619 CGACACACAAAACGAGACGT 59.081 50.000 0.00 0.00 43.97 4.34
777 2019 0.681733 TGCCGAGTCAGCTTCTTCTT 59.318 50.000 0.00 0.00 0.00 2.52
780 2022 1.623359 CGAGTCAGCTTCTTCTTCCG 58.377 55.000 0.00 0.00 0.00 4.30
784 2026 1.000955 GTCAGCTTCTTCTTCCGGACA 59.999 52.381 1.83 0.00 0.00 4.02
818 2060 2.762665 GGTATATACCGTGGGGCCA 58.237 57.895 16.11 0.00 36.50 5.36
904 2148 1.348036 AGCACCCAGGAGTCTAAACAC 59.652 52.381 0.00 0.00 0.00 3.32
941 2185 9.612620 CTTTAACAACTTCCTATAAAGCAACAG 57.387 33.333 0.00 0.00 29.82 3.16
973 2217 2.802719 GAAGCAAAGATAACCCACCCA 58.197 47.619 0.00 0.00 0.00 4.51
1353 2597 1.078848 CTTCCTGGGCCTCAAGACG 60.079 63.158 4.53 0.00 0.00 4.18
1482 2726 1.003718 CCCCGTCAAGAACCAGGTC 60.004 63.158 0.00 0.00 0.00 3.85
1483 2727 1.003718 CCCGTCAAGAACCAGGTCC 60.004 63.158 0.00 0.00 0.00 4.46
1484 2728 1.003718 CCGTCAAGAACCAGGTCCC 60.004 63.158 0.00 0.00 0.00 4.46
1511 2755 5.449177 CCTGATTCTTTGGCCGTTTTATCTC 60.449 44.000 0.00 0.00 0.00 2.75
1719 2966 5.347342 TGTGATTGGTTGATTGTTCACAAC 58.653 37.500 0.00 0.00 40.14 3.32
1741 2988 4.531732 ACATAGGTTGGATTTTTGTGGCAT 59.468 37.500 0.00 0.00 0.00 4.40
1758 3005 3.505680 TGGCATGTCACTATGTTTTGTCC 59.494 43.478 0.00 0.00 0.00 4.02
1771 3018 3.200483 GTTTTGTCCGTTGGTGTAGACT 58.800 45.455 0.00 0.00 0.00 3.24
1772 3019 4.141981 TGTTTTGTCCGTTGGTGTAGACTA 60.142 41.667 0.00 0.00 0.00 2.59
1773 3020 4.877378 TTTGTCCGTTGGTGTAGACTAT 57.123 40.909 0.00 0.00 0.00 2.12
1815 3062 3.417275 TTGGGCAACGCACCAAACG 62.417 57.895 6.48 0.00 43.35 3.60
1892 3139 7.051000 TGGAAAACTTTACAAGGGAAATTTGG 58.949 34.615 0.00 0.00 0.00 3.28
1917 3165 2.107204 ACAAGAGTGGCAAGATCCTGTT 59.893 45.455 0.00 0.00 0.00 3.16
1922 3170 4.472833 AGAGTGGCAAGATCCTGTTAGATT 59.527 41.667 0.00 0.00 0.00 2.40
1923 3171 5.663106 AGAGTGGCAAGATCCTGTTAGATTA 59.337 40.000 0.00 0.00 0.00 1.75
1924 3172 6.328672 AGAGTGGCAAGATCCTGTTAGATTAT 59.671 38.462 0.00 0.00 0.00 1.28
1925 3173 6.904626 AGTGGCAAGATCCTGTTAGATTATT 58.095 36.000 0.00 0.00 0.00 1.40
1926 3174 8.034313 AGTGGCAAGATCCTGTTAGATTATTA 57.966 34.615 0.00 0.00 0.00 0.98
1927 3175 7.934120 AGTGGCAAGATCCTGTTAGATTATTAC 59.066 37.037 0.00 0.00 0.00 1.89
1930 3178 9.646427 GGCAAGATCCTGTTAGATTATTACTAG 57.354 37.037 0.00 0.00 0.00 2.57
1952 3200 6.131544 AGTTAACAGTCAACAAAAGCGATT 57.868 33.333 8.61 0.00 0.00 3.34
2008 3256 9.431887 TCAACATAGTAATCACCTCAAACTTAC 57.568 33.333 0.00 0.00 0.00 2.34
2009 3257 9.436957 CAACATAGTAATCACCTCAAACTTACT 57.563 33.333 0.00 0.00 36.75 2.24
2010 3258 9.436957 AACATAGTAATCACCTCAAACTTACTG 57.563 33.333 0.00 0.00 35.09 2.74
2080 3329 7.448161 TCCTTTTGTTGAGATGATAGCTTCAAA 59.552 33.333 0.00 0.00 38.03 2.69
2203 3453 5.428253 TCAGTATTCAGTATTCACCAAGGC 58.572 41.667 0.00 0.00 0.00 4.35
2226 3476 4.666237 GCCTTGTGCTTATTCACTGATTC 58.334 43.478 0.00 0.00 37.81 2.52
2229 3479 2.677836 TGTGCTTATTCACTGATTCGGC 59.322 45.455 0.00 0.00 37.81 5.54
2233 3483 0.828022 TATTCACTGATTCGGCGGGT 59.172 50.000 7.21 0.00 0.00 5.28
2401 3651 7.712639 TGCCACTTAACTTGATATTCTGATCTC 59.287 37.037 0.00 0.00 0.00 2.75
2478 3728 7.234371 TGTCATCAAACCAATAAGGGAAATGAA 59.766 33.333 0.00 0.00 43.89 2.57
2520 3770 0.953960 GTGTCCTTTGGTAGTGCCCG 60.954 60.000 0.00 0.00 36.04 6.13
2637 3895 1.086696 CTGTAAGGGCACATCAACCG 58.913 55.000 0.00 0.00 0.00 4.44
2699 3957 8.539073 AACTTTTGTTGAAGGGCCTTTTACCC 62.539 42.308 21.92 7.65 43.86 3.69
2786 4050 5.357314 TCAGTTTACCTATCTTCTCCAGTCG 59.643 44.000 0.00 0.00 0.00 4.18
2834 4098 9.708092 AACTGTTGTCTAGAAAAATACTACTCC 57.292 33.333 0.00 0.00 0.00 3.85
2835 4099 8.312564 ACTGTTGTCTAGAAAAATACTACTCCC 58.687 37.037 0.00 0.00 0.00 4.30
2836 4100 8.431910 TGTTGTCTAGAAAAATACTACTCCCT 57.568 34.615 0.00 0.00 0.00 4.20
2837 4101 8.529476 TGTTGTCTAGAAAAATACTACTCCCTC 58.471 37.037 0.00 0.00 0.00 4.30
2838 4102 7.657023 TGTCTAGAAAAATACTACTCCCTCC 57.343 40.000 0.00 0.00 0.00 4.30
2839 4103 6.320672 TGTCTAGAAAAATACTACTCCCTCCG 59.679 42.308 0.00 0.00 0.00 4.63
2840 4104 6.320926 GTCTAGAAAAATACTACTCCCTCCGT 59.679 42.308 0.00 0.00 0.00 4.69
2841 4105 6.894103 TCTAGAAAAATACTACTCCCTCCGTT 59.106 38.462 0.00 0.00 0.00 4.44
2842 4106 5.975282 AGAAAAATACTACTCCCTCCGTTC 58.025 41.667 0.00 0.00 0.00 3.95
2843 4107 4.750021 AAAATACTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
2844 4108 3.684408 AATACTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
2845 4109 4.803329 AATACTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
2846 4110 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
2847 4111 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2848 4112 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2849 4113 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2850 4114 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
2851 4115 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2852 4116 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2853 4117 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2854 4118 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2855 4119 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2856 4120 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2857 4121 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2858 4122 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2859 4123 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2860 4124 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2861 4125 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2862 4126 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2863 4127 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
2864 4128 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
2865 4129 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
2866 4130 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
2867 4131 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
2868 4132 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
2870 4134 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
2871 4135 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
2872 4136 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
2873 4137 5.241728 ACTTGTCTTTCTAGGCATTTCAACC 59.758 40.000 0.00 0.00 35.56 3.77
2874 4138 4.724399 TGTCTTTCTAGGCATTTCAACCA 58.276 39.130 0.00 0.00 29.10 3.67
2875 4139 4.761739 TGTCTTTCTAGGCATTTCAACCAG 59.238 41.667 0.00 0.00 29.10 4.00
2876 4140 4.762251 GTCTTTCTAGGCATTTCAACCAGT 59.238 41.667 0.00 0.00 0.00 4.00
2877 4141 4.761739 TCTTTCTAGGCATTTCAACCAGTG 59.238 41.667 0.00 0.00 0.00 3.66
2878 4142 4.365514 TTCTAGGCATTTCAACCAGTGA 57.634 40.909 0.00 0.00 0.00 3.41
2879 4143 3.674997 TCTAGGCATTTCAACCAGTGAC 58.325 45.455 0.00 0.00 35.39 3.67
2880 4144 2.664402 AGGCATTTCAACCAGTGACT 57.336 45.000 0.00 0.00 35.39 3.41
2881 4145 3.788227 AGGCATTTCAACCAGTGACTA 57.212 42.857 0.00 0.00 35.39 2.59
2882 4146 3.412386 AGGCATTTCAACCAGTGACTAC 58.588 45.455 0.00 0.00 35.39 2.73
2883 4147 3.146066 GGCATTTCAACCAGTGACTACA 58.854 45.455 0.00 0.00 35.39 2.74
2884 4148 3.758554 GGCATTTCAACCAGTGACTACAT 59.241 43.478 0.00 0.00 35.39 2.29
2885 4149 4.941263 GGCATTTCAACCAGTGACTACATA 59.059 41.667 0.00 0.00 35.39 2.29
2886 4150 5.590259 GGCATTTCAACCAGTGACTACATAT 59.410 40.000 0.00 0.00 35.39 1.78
2887 4151 6.458751 GGCATTTCAACCAGTGACTACATATG 60.459 42.308 0.00 0.00 35.39 1.78
2888 4152 6.458751 GCATTTCAACCAGTGACTACATATGG 60.459 42.308 7.80 0.00 39.79 2.74
2889 4153 6.367374 TTTCAACCAGTGACTACATATGGA 57.633 37.500 7.80 0.00 38.36 3.41
2890 4154 5.598416 TCAACCAGTGACTACATATGGAG 57.402 43.478 13.77 13.77 38.36 3.86
2891 4155 4.122776 CAACCAGTGACTACATATGGAGC 58.877 47.826 15.30 8.47 38.36 4.70
2892 4156 3.374764 ACCAGTGACTACATATGGAGCA 58.625 45.455 15.30 10.95 38.36 4.26
2893 4157 3.774766 ACCAGTGACTACATATGGAGCAA 59.225 43.478 15.30 0.16 38.36 3.91
2894 4158 4.225042 ACCAGTGACTACATATGGAGCAAA 59.775 41.667 15.30 0.00 38.36 3.68
2895 4159 5.185454 CCAGTGACTACATATGGAGCAAAA 58.815 41.667 15.30 0.00 37.70 2.44
2896 4160 5.824624 CCAGTGACTACATATGGAGCAAAAT 59.175 40.000 15.30 0.00 37.70 1.82
2897 4161 6.238566 CCAGTGACTACATATGGAGCAAAATG 60.239 42.308 15.30 9.70 37.70 2.32
2898 4162 6.539826 CAGTGACTACATATGGAGCAAAATGA 59.460 38.462 15.30 0.00 0.00 2.57
2899 4163 6.765036 AGTGACTACATATGGAGCAAAATGAG 59.235 38.462 15.30 0.00 0.00 2.90
2900 4164 6.540189 GTGACTACATATGGAGCAAAATGAGT 59.460 38.462 15.30 0.00 0.00 3.41
2901 4165 6.539826 TGACTACATATGGAGCAAAATGAGTG 59.460 38.462 15.30 0.00 0.00 3.51
2902 4166 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
2903 4167 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
2904 4168 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
2905 4169 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
2906 4170 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
2907 4171 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
2908 4172 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
2909 4173 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
2910 4174 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
2984 4248 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2985 4249 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2986 4250 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2987 4251 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2988 4252 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2989 4253 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2990 4254 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3047 4318 5.232463 ACAATTCTTTCTGCAATGCGAATT 58.768 33.333 10.69 10.69 32.96 2.17
3059 4330 4.260784 GCAATGCGAATTCAAGGGTAGTAG 60.261 45.833 6.22 0.00 0.00 2.57
3092 4363 6.785337 ATTACCTTTTATTGCCTGGTTACC 57.215 37.500 0.00 0.00 32.74 2.85
3101 4372 1.037579 GCCTGGTTACCTTGATGGGC 61.038 60.000 2.07 3.49 41.11 5.36
3418 4689 5.489792 ACTGTCTCACATGGAGTTTACAT 57.510 39.130 0.00 0.00 44.40 2.29
3718 4989 1.523258 CAAGATCTGCAGGGGCTCG 60.523 63.158 15.13 0.00 41.91 5.03
3736 5007 1.061887 GAACGTGCGCAACAAGTGT 59.938 52.632 14.00 0.70 40.33 3.55
3787 5058 1.374758 CACTCACGCCTCCAAGGAC 60.375 63.158 0.00 0.00 37.67 3.85
3800 5071 0.457851 CAAGGACGAGTAGGCTCTGG 59.542 60.000 0.00 0.00 39.53 3.86
3805 5076 0.328592 ACGAGTAGGCTCTGGTCTGA 59.671 55.000 0.00 0.00 39.53 3.27
3806 5077 1.064314 ACGAGTAGGCTCTGGTCTGAT 60.064 52.381 0.00 0.00 39.53 2.90
3807 5078 1.606668 CGAGTAGGCTCTGGTCTGATC 59.393 57.143 0.00 0.00 39.53 2.92
3808 5079 2.748132 CGAGTAGGCTCTGGTCTGATCT 60.748 54.545 0.00 0.00 39.53 2.75
3809 5080 2.622942 GAGTAGGCTCTGGTCTGATCTG 59.377 54.545 0.00 0.00 38.66 2.90
3821 5092 1.538950 TCTGATCTGATCTGATCGGCG 59.461 52.381 31.78 22.94 44.97 6.46
3852 5123 1.069513 TGTCGATCTTGGTTTCGGTGT 59.930 47.619 0.00 0.00 36.08 4.16
3853 5124 1.459592 GTCGATCTTGGTTTCGGTGTG 59.540 52.381 0.00 0.00 36.08 3.82
3854 5125 1.069513 TCGATCTTGGTTTCGGTGTGT 59.930 47.619 0.00 0.00 36.08 3.72
3855 5126 1.194547 CGATCTTGGTTTCGGTGTGTG 59.805 52.381 0.00 0.00 0.00 3.82
4022 5299 0.381801 CACGCTATTTGGATGTGGCC 59.618 55.000 0.00 0.00 0.00 5.36
4092 5369 1.384525 TGGTGTTCCGTCTTTGTTGG 58.615 50.000 0.00 0.00 36.30 3.77
4111 5388 0.875059 GCTTTGCTTGCGAGGTACTT 59.125 50.000 2.37 0.00 41.55 2.24
4131 5410 9.457436 GGTACTTCCTATGTAAAGAAATTGGAA 57.543 33.333 0.00 0.00 35.99 3.53
4142 5421 8.087750 TGTAAAGAAATTGGAAAATAGTGCCAG 58.912 33.333 0.00 0.00 32.47 4.85
4144 5423 4.774200 AGAAATTGGAAAATAGTGCCAGCT 59.226 37.500 0.00 0.00 32.47 4.24
4145 5424 4.460948 AATTGGAAAATAGTGCCAGCTG 57.539 40.909 6.78 6.78 32.47 4.24
4146 5425 1.176527 TGGAAAATAGTGCCAGCTGC 58.823 50.000 8.66 4.57 41.77 5.25
4147 5426 1.272092 TGGAAAATAGTGCCAGCTGCT 60.272 47.619 8.66 2.52 42.00 4.24
4148 5427 1.821136 GGAAAATAGTGCCAGCTGCTT 59.179 47.619 8.66 0.00 42.00 3.91
4149 5428 2.159324 GGAAAATAGTGCCAGCTGCTTC 60.159 50.000 8.66 0.00 42.00 3.86
4174 7936 8.999431 TCTCATTTCTTCAACCAGTAATTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4191 7953 7.793948 AATTGTACTAAGTGGTCTTCTAGGT 57.206 36.000 0.00 0.00 35.36 3.08
4195 7957 8.517062 TGTACTAAGTGGTCTTCTAGGTAATC 57.483 38.462 0.00 0.00 35.36 1.75
4216 7978 9.022884 GTAATCCCTCTTTCCTAATAGTACGAT 57.977 37.037 0.00 0.00 0.00 3.73
4218 7980 7.992754 TCCCTCTTTCCTAATAGTACGATAC 57.007 40.000 0.00 0.00 0.00 2.24
4219 7981 6.652481 TCCCTCTTTCCTAATAGTACGATACG 59.348 42.308 0.00 0.00 0.00 3.06
4220 7982 6.652481 CCCTCTTTCCTAATAGTACGATACGA 59.348 42.308 0.00 0.00 0.00 3.43
4235 7997 3.606384 CGATACGAGTTCGAGTACCATGG 60.606 52.174 11.19 11.19 43.02 3.66
4247 8009 3.456277 GAGTACCATGGACCAGGATCTTT 59.544 47.826 21.47 0.00 0.00 2.52
4332 8095 0.554792 AGCGCTAGGGGTCTAAGGTA 59.445 55.000 8.99 0.00 0.00 3.08
4335 8098 2.595238 CGCTAGGGGTCTAAGGTATGT 58.405 52.381 0.00 0.00 0.00 2.29
4347 8110 1.755179 AGGTATGTTGACATGGCAGC 58.245 50.000 8.73 8.73 37.15 5.25
4368 8131 1.679153 CACATGGCCGTATTTTACCCC 59.321 52.381 0.00 0.00 0.00 4.95
4375 8138 2.424601 GCCGTATTTTACCCCCTCAAAC 59.575 50.000 0.00 0.00 0.00 2.93
4376 8139 3.688235 CCGTATTTTACCCCCTCAAACA 58.312 45.455 0.00 0.00 0.00 2.83
4378 8141 4.329392 CGTATTTTACCCCCTCAAACAGT 58.671 43.478 0.00 0.00 0.00 3.55
4382 8145 5.346181 TTTTACCCCCTCAAACAGTTTTG 57.654 39.130 0.00 0.00 43.17 2.44
4383 8146 1.119684 ACCCCCTCAAACAGTTTTGC 58.880 50.000 0.00 0.00 41.78 3.68
4426 8190 8.259049 ACGAGTTTATGGTTTAAATTGATCGA 57.741 30.769 0.00 0.00 0.00 3.59
4433 8197 9.929722 TTATGGTTTAAATTGATCGATTCTTCG 57.070 29.630 8.68 0.00 46.87 3.79
4437 8201 8.392612 GGTTTAAATTGATCGATTCTTCGGTTA 58.607 33.333 8.68 0.00 45.53 2.85
4459 8223 1.062525 GGCCTAAAGCGTGCAATCG 59.937 57.895 0.00 0.00 45.17 3.34
4461 8225 1.644786 GCCTAAAGCGTGCAATCGGT 61.645 55.000 0.00 0.00 43.29 4.69
4475 8239 4.704540 TGCAATCGGTTTGAGTTAATGGAT 59.295 37.500 3.06 0.00 37.53 3.41
4476 8240 5.883115 TGCAATCGGTTTGAGTTAATGGATA 59.117 36.000 3.06 0.00 37.53 2.59
4477 8241 6.375736 TGCAATCGGTTTGAGTTAATGGATAA 59.624 34.615 3.06 0.00 37.53 1.75
4480 8244 9.236691 CAATCGGTTTGAGTTAATGGATAAATG 57.763 33.333 0.00 0.00 37.53 2.32
4481 8245 8.746052 ATCGGTTTGAGTTAATGGATAAATGA 57.254 30.769 0.00 0.00 0.00 2.57
4483 8247 7.608376 TCGGTTTGAGTTAATGGATAAATGACA 59.392 33.333 0.00 0.00 0.00 3.58
4494 8258 8.585471 AATGGATAAATGACACATTTCACTCT 57.415 30.769 12.02 0.00 0.00 3.24
4495 8259 8.585471 ATGGATAAATGACACATTTCACTCTT 57.415 30.769 12.02 0.00 0.00 2.85
4501 8265 4.074259 TGACACATTTCACTCTTGGGATG 58.926 43.478 0.00 0.00 0.00 3.51
4502 8266 4.202451 TGACACATTTCACTCTTGGGATGA 60.202 41.667 0.00 0.00 0.00 2.92
4503 8267 4.074970 ACACATTTCACTCTTGGGATGAC 58.925 43.478 0.00 0.00 0.00 3.06
4505 8269 4.074970 ACATTTCACTCTTGGGATGACAC 58.925 43.478 0.00 0.00 0.00 3.67
4506 8270 3.855255 TTTCACTCTTGGGATGACACA 57.145 42.857 0.00 0.00 0.00 3.72
4508 8272 3.616956 TCACTCTTGGGATGACACATC 57.383 47.619 0.00 0.00 0.00 3.06
4509 8273 2.094026 TCACTCTTGGGATGACACATCG 60.094 50.000 0.00 0.00 0.00 3.84
4515 8373 1.224592 GGATGACACATCGGGGCTT 59.775 57.895 0.00 0.00 0.00 4.35
4523 8381 0.327924 ACATCGGGGCTTGTTCATGA 59.672 50.000 0.00 0.00 0.00 3.07
4586 8444 1.681538 TGAGAGTAGGCGATGGAGAC 58.318 55.000 0.00 0.00 0.00 3.36
4651 8509 2.365582 GTCAATGCGGGAGGTGTTATT 58.634 47.619 0.00 0.00 0.00 1.40
4659 8517 3.139077 CGGGAGGTGTTATTGCCTTATC 58.861 50.000 0.00 0.00 34.81 1.75
4666 8524 4.443034 GGTGTTATTGCCTTATCGGAGAGT 60.443 45.833 0.00 0.00 43.63 3.24
4689 8548 1.668628 GCGCGACAAAATTGAATGGGT 60.669 47.619 12.10 0.00 0.00 4.51
4713 8572 5.757886 TGTTTTGGAATCTCATCAAACGAC 58.242 37.500 0.00 0.00 31.21 4.34
4718 8577 4.151689 TGGAATCTCATCAAACGACGAAAC 59.848 41.667 0.00 0.00 0.00 2.78
4754 8613 2.476619 AGATTTAAGCGAATCGATGGCG 59.523 45.455 6.91 14.47 40.22 5.69
4784 8643 3.691609 GGTCTGACAAATGACTTCCATCC 59.308 47.826 10.38 0.00 33.53 3.51
4785 8644 3.372206 GTCTGACAAATGACTTCCATCCG 59.628 47.826 2.24 0.00 33.53 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.023732 CACATTCGCGTCGATGTGAC 59.976 55.000 30.39 0.00 42.18 3.67
26 27 1.682867 GCACATTCGCGTCGATGTGA 61.683 55.000 34.34 16.70 42.18 3.58
27 28 1.296145 GCACATTCGCGTCGATGTG 60.296 57.895 30.08 30.08 42.32 3.21
28 29 1.083806 ATGCACATTCGCGTCGATGT 61.084 50.000 5.77 12.44 35.23 3.06
29 30 0.652465 CATGCACATTCGCGTCGATG 60.652 55.000 5.77 11.79 35.23 3.84
30 31 0.805711 TCATGCACATTCGCGTCGAT 60.806 50.000 5.77 0.00 35.23 3.59
31 32 1.413008 CTCATGCACATTCGCGTCGA 61.413 55.000 5.77 0.00 33.35 4.20
32 33 1.012998 CTCATGCACATTCGCGTCG 60.013 57.895 5.77 0.00 33.35 5.12
33 34 1.297158 GCTCATGCACATTCGCGTC 60.297 57.895 5.77 0.00 39.41 5.19
34 35 2.753966 GGCTCATGCACATTCGCGT 61.754 57.895 5.77 0.00 41.91 6.01
35 36 2.023741 GGCTCATGCACATTCGCG 59.976 61.111 0.00 0.00 41.91 5.87
36 37 0.946528 TATGGCTCATGCACATTCGC 59.053 50.000 0.00 0.00 41.91 4.70
37 38 3.909776 AATATGGCTCATGCACATTCG 57.090 42.857 0.00 0.00 41.91 3.34
38 39 4.380233 GGCTAATATGGCTCATGCACATTC 60.380 45.833 0.00 0.00 41.91 2.67
50 51 5.782047 TGCACATTAATTGGCTAATATGGC 58.218 37.500 9.54 9.70 0.00 4.40
54 55 9.149225 CAAACTTTGCACATTAATTGGCTAATA 57.851 29.630 0.00 0.00 0.00 0.98
76 77 2.989166 GTTGCTCTTATTGGCTGCAAAC 59.011 45.455 0.50 0.00 43.72 2.93
81 82 3.119708 GGTTGAGTTGCTCTTATTGGCTG 60.120 47.826 0.00 0.00 0.00 4.85
84 85 5.452078 TTTGGTTGAGTTGCTCTTATTGG 57.548 39.130 0.00 0.00 0.00 3.16
85 86 7.373493 AGAATTTGGTTGAGTTGCTCTTATTG 58.627 34.615 0.00 0.00 0.00 1.90
88 89 6.959639 AAGAATTTGGTTGAGTTGCTCTTA 57.040 33.333 0.00 0.00 0.00 2.10
97 98 6.980593 TGACATGGTAAAGAATTTGGTTGAG 58.019 36.000 0.00 0.00 39.63 3.02
98 99 6.968263 TGACATGGTAAAGAATTTGGTTGA 57.032 33.333 0.00 0.00 39.63 3.18
144 145 2.282555 CAGTGATATGGAAGCGAACACG 59.717 50.000 0.00 0.00 33.00 4.49
145 146 3.521560 TCAGTGATATGGAAGCGAACAC 58.478 45.455 0.00 0.00 0.00 3.32
147 148 5.545658 TTTTCAGTGATATGGAAGCGAAC 57.454 39.130 0.00 0.00 0.00 3.95
149 150 6.257849 GTGTATTTTCAGTGATATGGAAGCGA 59.742 38.462 0.00 0.00 0.00 4.93
150 151 6.037062 TGTGTATTTTCAGTGATATGGAAGCG 59.963 38.462 0.00 0.00 0.00 4.68
162 163 8.317679 AGAGAGCTTCTTATGTGTATTTTCAGT 58.682 33.333 0.00 0.00 29.61 3.41
163 164 8.715191 AGAGAGCTTCTTATGTGTATTTTCAG 57.285 34.615 0.00 0.00 29.61 3.02
180 181 5.046014 ACACTTCCATATGTCAAGAGAGCTT 60.046 40.000 15.34 0.00 33.74 3.74
190 191 3.004752 AGGCCAACACTTCCATATGTC 57.995 47.619 5.01 0.00 0.00 3.06
207 208 1.069204 TGTCATCCGCATCTCTTAGGC 59.931 52.381 0.00 0.00 0.00 3.93
223 224 0.536233 CCGGACAAACCCATGTGTCA 60.536 55.000 14.12 0.00 44.89 3.58
226 227 1.269448 CTTTCCGGACAAACCCATGTG 59.731 52.381 1.83 0.00 32.57 3.21
230 231 1.770061 ACTACTTTCCGGACAAACCCA 59.230 47.619 1.83 0.00 34.64 4.51
232 233 3.116079 TGACTACTTTCCGGACAAACC 57.884 47.619 1.83 0.00 0.00 3.27
242 243 3.927142 CCAACTCGTCCATGACTACTTTC 59.073 47.826 0.00 0.00 0.00 2.62
257 258 4.111375 ACAGCTAACTATGACCAACTCG 57.889 45.455 0.00 0.00 0.00 4.18
261 262 4.890088 ACGAAACAGCTAACTATGACCAA 58.110 39.130 0.00 0.00 0.00 3.67
271 272 8.609176 GTGAATATTATGGAACGAAACAGCTAA 58.391 33.333 0.00 0.00 0.00 3.09
275 276 6.899771 CGTGTGAATATTATGGAACGAAACAG 59.100 38.462 0.00 0.00 31.76 3.16
276 277 6.673556 GCGTGTGAATATTATGGAACGAAACA 60.674 38.462 10.84 0.00 31.76 2.83
280 281 3.805422 GGCGTGTGAATATTATGGAACGA 59.195 43.478 10.84 0.00 31.76 3.85
281 282 3.807622 AGGCGTGTGAATATTATGGAACG 59.192 43.478 0.00 0.00 0.00 3.95
283 284 6.767524 AAAAGGCGTGTGAATATTATGGAA 57.232 33.333 0.00 0.00 0.00 3.53
305 306 1.269448 GAAGCATCCAGGTTCGCAAAA 59.731 47.619 0.00 0.00 43.93 2.44
336 337 6.183360 GCTAAGTGAATGATGGGTAGAGAGAA 60.183 42.308 0.00 0.00 0.00 2.87
338 339 5.069648 TGCTAAGTGAATGATGGGTAGAGAG 59.930 44.000 0.00 0.00 0.00 3.20
347 348 5.944049 GCATTGTTGCTAAGTGAATGATG 57.056 39.130 0.00 0.00 45.77 3.07
362 363 2.036346 GCTTTGAGGAGGTTGCATTGTT 59.964 45.455 0.00 0.00 0.00 2.83
368 369 1.260544 AATGGCTTTGAGGAGGTTGC 58.739 50.000 0.00 0.00 0.00 4.17
393 394 4.468713 TGATTGTGATGAGGGTTTGTTCA 58.531 39.130 0.00 0.00 0.00 3.18
394 395 5.649782 ATGATTGTGATGAGGGTTTGTTC 57.350 39.130 0.00 0.00 0.00 3.18
443 444 5.817296 TCGCACAATTTATGTAGATGAGCTT 59.183 36.000 0.00 0.00 41.46 3.74
499 500 3.084536 TGCTGGCAACCATCTAATTCA 57.915 42.857 0.00 0.00 30.82 2.57
500 501 3.696051 TCTTGCTGGCAACCATCTAATTC 59.304 43.478 3.72 0.00 30.82 2.17
504 1125 1.679944 GCTCTTGCTGGCAACCATCTA 60.680 52.381 3.72 0.00 36.03 1.98
507 1128 0.613853 ATGCTCTTGCTGGCAACCAT 60.614 50.000 3.72 5.07 41.90 3.55
512 1133 0.540133 TTTCCATGCTCTTGCTGGCA 60.540 50.000 0.00 0.00 42.80 4.92
514 1135 1.743958 CTCTTTCCATGCTCTTGCTGG 59.256 52.381 0.00 0.00 40.48 4.85
517 1138 1.101331 CCCTCTTTCCATGCTCTTGC 58.899 55.000 0.00 0.00 40.20 4.01
519 1140 3.814504 TTTCCCTCTTTCCATGCTCTT 57.185 42.857 0.00 0.00 0.00 2.85
536 1157 3.149981 AGCTAGCACCAAGGAAGTTTTC 58.850 45.455 18.83 0.00 0.00 2.29
555 1177 3.808174 CCCTGTAACCTCGCTTTATTAGC 59.192 47.826 0.00 0.00 46.83 3.09
556 1178 4.377897 CCCCTGTAACCTCGCTTTATTAG 58.622 47.826 0.00 0.00 0.00 1.73
557 1179 3.432608 GCCCCTGTAACCTCGCTTTATTA 60.433 47.826 0.00 0.00 0.00 0.98
558 1180 2.682858 GCCCCTGTAACCTCGCTTTATT 60.683 50.000 0.00 0.00 0.00 1.40
560 1182 0.251073 GCCCCTGTAACCTCGCTTTA 59.749 55.000 0.00 0.00 0.00 1.85
565 1187 0.673644 CACAAGCCCCTGTAACCTCG 60.674 60.000 0.00 0.00 0.00 4.63
572 1194 2.203394 CTGCACACAAGCCCCTGT 60.203 61.111 0.00 0.00 0.00 4.00
573 1195 2.987547 CCTGCACACAAGCCCCTG 60.988 66.667 0.00 0.00 0.00 4.45
575 1197 2.521708 AACCTGCACACAAGCCCC 60.522 61.111 0.00 0.00 0.00 5.80
593 1835 0.257039 ATGACCTGGCTGATGGGAAC 59.743 55.000 0.00 0.00 0.00 3.62
594 1836 0.548031 GATGACCTGGCTGATGGGAA 59.452 55.000 0.00 0.00 0.00 3.97
596 1838 1.227764 CGATGACCTGGCTGATGGG 60.228 63.158 0.00 0.00 0.00 4.00
606 1848 3.623060 CCATTGACGAAAATCGATGACCT 59.377 43.478 6.78 0.00 43.74 3.85
607 1849 3.788797 GCCATTGACGAAAATCGATGACC 60.789 47.826 6.78 0.00 43.74 4.02
611 1853 4.637483 AATGCCATTGACGAAAATCGAT 57.363 36.364 6.78 0.00 43.74 3.59
613 1855 5.514059 AAAAATGCCATTGACGAAAATCG 57.486 34.783 0.00 0.00 46.93 3.34
666 1908 8.566260 GCATTCTTATGTAAATGATCTTGCTCT 58.434 33.333 0.00 0.00 35.35 4.09
667 1909 8.347771 TGCATTCTTATGTAAATGATCTTGCTC 58.652 33.333 0.00 0.00 35.35 4.26
668 1910 8.229253 TGCATTCTTATGTAAATGATCTTGCT 57.771 30.769 0.00 0.00 35.35 3.91
669 1911 8.347771 TCTGCATTCTTATGTAAATGATCTTGC 58.652 33.333 0.00 0.00 35.35 4.01
672 1914 9.788889 TGATCTGCATTCTTATGTAAATGATCT 57.211 29.630 0.00 0.00 35.35 2.75
686 1928 9.788889 TGATCTTATGTAAATGATCTGCATTCT 57.211 29.630 0.00 0.00 46.25 2.40
690 1932 8.789762 CCATTGATCTTATGTAAATGATCTGCA 58.210 33.333 0.00 0.00 37.00 4.41
691 1933 7.754027 GCCATTGATCTTATGTAAATGATCTGC 59.246 37.037 0.00 0.00 37.00 4.26
692 1934 8.789762 TGCCATTGATCTTATGTAAATGATCTG 58.210 33.333 0.00 0.00 37.00 2.90
693 1935 8.790718 GTGCCATTGATCTTATGTAAATGATCT 58.209 33.333 0.00 0.00 37.00 2.75
694 1936 8.790718 AGTGCCATTGATCTTATGTAAATGATC 58.209 33.333 0.00 0.00 36.72 2.92
695 1937 8.701908 AGTGCCATTGATCTTATGTAAATGAT 57.298 30.769 0.00 0.00 31.34 2.45
696 1938 9.276590 CTAGTGCCATTGATCTTATGTAAATGA 57.723 33.333 0.00 0.00 31.34 2.57
697 1939 8.019669 GCTAGTGCCATTGATCTTATGTAAATG 58.980 37.037 0.00 0.00 0.00 2.32
698 1940 8.103948 GCTAGTGCCATTGATCTTATGTAAAT 57.896 34.615 0.00 0.00 0.00 1.40
699 1941 7.496529 GCTAGTGCCATTGATCTTATGTAAA 57.503 36.000 0.00 0.00 0.00 2.01
716 1958 1.336887 TGTCGAAAGTCAGGCTAGTGC 60.337 52.381 0.00 0.00 38.76 4.40
717 1959 2.288213 TGTGTCGAAAGTCAGGCTAGTG 60.288 50.000 0.00 0.00 0.00 2.74
718 1960 1.961394 TGTGTCGAAAGTCAGGCTAGT 59.039 47.619 0.00 0.00 0.00 2.57
719 1961 2.288213 TGTGTGTCGAAAGTCAGGCTAG 60.288 50.000 0.00 0.00 0.00 3.42
720 1962 1.684450 TGTGTGTCGAAAGTCAGGCTA 59.316 47.619 0.00 0.00 0.00 3.93
721 1963 0.464036 TGTGTGTCGAAAGTCAGGCT 59.536 50.000 0.00 0.00 0.00 4.58
722 1964 1.295792 TTGTGTGTCGAAAGTCAGGC 58.704 50.000 0.00 0.00 0.00 4.85
723 1965 3.680789 GTTTTGTGTGTCGAAAGTCAGG 58.319 45.455 0.00 0.00 30.93 3.86
724 1966 3.061563 TCGTTTTGTGTGTCGAAAGTCAG 59.938 43.478 0.00 0.00 30.93 3.51
725 1967 2.994578 TCGTTTTGTGTGTCGAAAGTCA 59.005 40.909 0.00 0.00 30.93 3.41
726 1968 3.305094 TCTCGTTTTGTGTGTCGAAAGTC 59.695 43.478 0.00 0.00 30.93 3.01
727 1969 3.061697 GTCTCGTTTTGTGTGTCGAAAGT 59.938 43.478 0.00 0.00 30.93 2.66
728 1970 3.594312 GTCTCGTTTTGTGTGTCGAAAG 58.406 45.455 0.00 0.00 30.93 2.62
729 1971 2.028284 CGTCTCGTTTTGTGTGTCGAAA 59.972 45.455 0.00 0.00 32.12 3.46
730 1972 1.584761 CGTCTCGTTTTGTGTGTCGAA 59.415 47.619 0.00 0.00 32.12 3.71
731 1973 1.193644 CGTCTCGTTTTGTGTGTCGA 58.806 50.000 0.00 0.00 0.00 4.20
732 1974 0.918619 ACGTCTCGTTTTGTGTGTCG 59.081 50.000 0.00 0.00 36.35 4.35
733 1975 1.005347 CCACGTCTCGTTTTGTGTGTC 60.005 52.381 0.00 0.00 38.32 3.67
734 1976 1.003851 CCACGTCTCGTTTTGTGTGT 58.996 50.000 0.00 0.00 38.32 3.72
735 1977 0.315869 GCCACGTCTCGTTTTGTGTG 60.316 55.000 0.00 0.00 38.32 3.82
736 1978 1.433837 GGCCACGTCTCGTTTTGTGT 61.434 55.000 0.00 0.00 38.32 3.72
737 1979 1.278637 GGCCACGTCTCGTTTTGTG 59.721 57.895 0.00 0.00 38.32 3.33
738 1980 1.890510 GGGCCACGTCTCGTTTTGT 60.891 57.895 4.39 0.00 38.32 2.83
739 1981 2.613506 GGGGCCACGTCTCGTTTTG 61.614 63.158 4.39 0.00 38.32 2.44
740 1982 2.281276 GGGGCCACGTCTCGTTTT 60.281 61.111 4.39 0.00 38.32 2.43
741 1983 3.239253 AGGGGCCACGTCTCGTTT 61.239 61.111 4.39 0.00 38.32 3.60
742 1984 4.003788 CAGGGGCCACGTCTCGTT 62.004 66.667 4.39 0.00 38.32 3.85
767 2009 0.321996 GGTGTCCGGAAGAAGAAGCT 59.678 55.000 5.23 0.00 0.00 3.74
818 2060 8.390921 TCCAAAGATATTTTACTCCTCCTTGTT 58.609 33.333 0.00 0.00 0.00 2.83
854 2096 1.256812 CAAACGGGCCCTTTGAGATT 58.743 50.000 28.80 11.02 31.32 2.40
860 2102 0.253327 TTTTTGCAAACGGGCCCTTT 59.747 45.000 22.43 15.34 0.00 3.11
861 2103 0.179059 CTTTTTGCAAACGGGCCCTT 60.179 50.000 22.43 7.92 0.00 3.95
862 2104 1.045911 TCTTTTTGCAAACGGGCCCT 61.046 50.000 22.43 3.67 0.00 5.19
941 2185 0.889186 TTTGCTTCGGCTCCACTTCC 60.889 55.000 0.00 0.00 42.37 3.46
973 2217 3.321968 GGGATTTTCTTGGTTGCTTGTCT 59.678 43.478 0.00 0.00 0.00 3.41
1021 2265 2.124693 CCAGGAGGACGAGGAGAGC 61.125 68.421 0.00 0.00 36.89 4.09
1344 2588 4.796231 CGCCGGGTCGTCTTGAGG 62.796 72.222 2.18 0.00 0.00 3.86
1484 2728 1.754234 CGGCCAAAGAATCAGGGGG 60.754 63.158 2.24 0.00 0.00 5.40
1719 2966 4.533919 TGCCACAAAAATCCAACCTATG 57.466 40.909 0.00 0.00 0.00 2.23
1741 2988 3.562141 CCAACGGACAAAACATAGTGACA 59.438 43.478 0.00 0.00 0.00 3.58
1778 3025 5.163663 GCCCAATCAGAAATCGACAACATAA 60.164 40.000 0.00 0.00 0.00 1.90
1815 3062 6.819146 CAGAACTCACCTAGACCCTTTATTTC 59.181 42.308 0.00 0.00 0.00 2.17
1892 3139 2.626840 GATCTTGCCACTCTTGTCCTC 58.373 52.381 0.00 0.00 0.00 3.71
1923 3171 8.280497 CGCTTTTGTTGACTGTTAACTAGTAAT 58.720 33.333 15.22 0.00 0.00 1.89
1924 3172 7.492020 TCGCTTTTGTTGACTGTTAACTAGTAA 59.508 33.333 15.22 0.00 0.00 2.24
1925 3173 6.979817 TCGCTTTTGTTGACTGTTAACTAGTA 59.020 34.615 15.22 1.81 0.00 1.82
1926 3174 5.813672 TCGCTTTTGTTGACTGTTAACTAGT 59.186 36.000 15.22 8.58 0.00 2.57
1927 3175 6.281848 TCGCTTTTGTTGACTGTTAACTAG 57.718 37.500 15.22 10.96 0.00 2.57
1930 3178 5.968848 TCAATCGCTTTTGTTGACTGTTAAC 59.031 36.000 8.36 8.36 0.00 2.01
2008 3256 1.597742 CACCAACAGGTTCTCCACAG 58.402 55.000 0.00 0.00 31.84 3.66
2009 3257 0.182537 CCACCAACAGGTTCTCCACA 59.817 55.000 0.00 0.00 31.84 4.17
2010 3258 0.182775 ACCACCAACAGGTTCTCCAC 59.817 55.000 0.00 0.00 35.33 4.02
2103 3352 3.843422 TCCATCCACTCACCAAACATTT 58.157 40.909 0.00 0.00 0.00 2.32
2229 3479 3.314331 ACCCTCACAGCTCACCCG 61.314 66.667 0.00 0.00 0.00 5.28
2233 3483 2.848679 TGGCACCCTCACAGCTCA 60.849 61.111 0.00 0.00 0.00 4.26
2275 3525 6.000219 CCTATTCTGGTGGATGGACAATAAG 59.000 44.000 0.00 0.00 0.00 1.73
2279 3529 2.092429 GCCTATTCTGGTGGATGGACAA 60.092 50.000 0.00 0.00 0.00 3.18
2401 3651 5.964958 TTGCTTCTTTCCCATTCAGTTAG 57.035 39.130 0.00 0.00 0.00 2.34
2497 3747 2.084546 GCACTACCAAAGGACACATCC 58.915 52.381 0.00 0.00 46.69 3.51
2520 3770 5.452078 TTTGGAGTCATGAACCAAACATC 57.548 39.130 28.91 5.45 44.98 3.06
2637 3895 6.708054 ACTGCATATGAGTAAAATGGAGCTAC 59.292 38.462 6.97 0.00 41.27 3.58
2699 3957 1.867233 AGTAAACAGCAAGACAGCACG 59.133 47.619 0.00 0.00 36.85 5.34
2731 3989 9.906660 AATACAAACAAACATGTAGTACCATTG 57.093 29.630 0.00 0.20 35.64 2.82
2786 4050 4.471904 TCATGTGATACCAGTGGTTCTC 57.528 45.455 22.49 17.66 37.09 2.87
2829 4093 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
2830 4094 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
2831 4095 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2832 4096 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2833 4097 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2834 4098 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2835 4099 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2836 4100 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2837 4101 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
2838 4102 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
2839 4103 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
2840 4104 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
2841 4105 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
2842 4106 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
2844 4108 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
2845 4109 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
2846 4110 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
2847 4111 7.121315 GGTTGAAATGCCTAGAAAGACAAGTAT 59.879 37.037 0.00 0.00 0.00 2.12
2848 4112 6.430000 GGTTGAAATGCCTAGAAAGACAAGTA 59.570 38.462 0.00 0.00 0.00 2.24
2849 4113 5.241728 GGTTGAAATGCCTAGAAAGACAAGT 59.758 40.000 0.00 0.00 0.00 3.16
2850 4114 5.241506 TGGTTGAAATGCCTAGAAAGACAAG 59.758 40.000 0.00 0.00 0.00 3.16
2851 4115 5.136828 TGGTTGAAATGCCTAGAAAGACAA 58.863 37.500 0.00 0.00 0.00 3.18
2852 4116 4.724399 TGGTTGAAATGCCTAGAAAGACA 58.276 39.130 0.00 0.00 0.00 3.41
2853 4117 4.762251 ACTGGTTGAAATGCCTAGAAAGAC 59.238 41.667 0.00 0.00 0.00 3.01
2854 4118 4.761739 CACTGGTTGAAATGCCTAGAAAGA 59.238 41.667 0.00 0.00 0.00 2.52
2855 4119 4.761739 TCACTGGTTGAAATGCCTAGAAAG 59.238 41.667 0.00 0.00 0.00 2.62
2856 4120 4.518970 GTCACTGGTTGAAATGCCTAGAAA 59.481 41.667 0.00 0.00 35.39 2.52
2857 4121 4.072131 GTCACTGGTTGAAATGCCTAGAA 58.928 43.478 0.00 0.00 35.39 2.10
2858 4122 3.327757 AGTCACTGGTTGAAATGCCTAGA 59.672 43.478 0.00 0.00 35.39 2.43
2859 4123 3.679389 AGTCACTGGTTGAAATGCCTAG 58.321 45.455 0.00 0.00 35.39 3.02
2860 4124 3.788227 AGTCACTGGTTGAAATGCCTA 57.212 42.857 0.00 0.00 35.39 3.93
2861 4125 2.664402 AGTCACTGGTTGAAATGCCT 57.336 45.000 0.00 0.00 35.39 4.75
2862 4126 3.146066 TGTAGTCACTGGTTGAAATGCC 58.854 45.455 0.00 0.00 35.39 4.40
2863 4127 6.458751 CCATATGTAGTCACTGGTTGAAATGC 60.459 42.308 1.24 0.00 35.39 3.56
2864 4128 6.823182 TCCATATGTAGTCACTGGTTGAAATG 59.177 38.462 1.24 0.00 35.39 2.32
2865 4129 6.957631 TCCATATGTAGTCACTGGTTGAAAT 58.042 36.000 1.24 0.00 35.39 2.17
2866 4130 6.367374 TCCATATGTAGTCACTGGTTGAAA 57.633 37.500 1.24 0.00 35.39 2.69
2867 4131 5.626809 GCTCCATATGTAGTCACTGGTTGAA 60.627 44.000 1.24 0.00 35.39 2.69
2868 4132 4.141937 GCTCCATATGTAGTCACTGGTTGA 60.142 45.833 1.24 0.00 33.80 3.18
2869 4133 4.122776 GCTCCATATGTAGTCACTGGTTG 58.877 47.826 1.24 0.00 33.80 3.77
2870 4134 3.774766 TGCTCCATATGTAGTCACTGGTT 59.225 43.478 1.24 0.00 33.80 3.67
2871 4135 3.374764 TGCTCCATATGTAGTCACTGGT 58.625 45.455 1.24 0.00 33.80 4.00
2872 4136 4.406648 TTGCTCCATATGTAGTCACTGG 57.593 45.455 1.24 0.00 33.54 4.00
2873 4137 6.539826 TCATTTTGCTCCATATGTAGTCACTG 59.460 38.462 1.24 0.00 0.00 3.66
2874 4138 6.653020 TCATTTTGCTCCATATGTAGTCACT 58.347 36.000 1.24 0.00 0.00 3.41
2875 4139 6.540189 ACTCATTTTGCTCCATATGTAGTCAC 59.460 38.462 1.24 0.00 0.00 3.67
2876 4140 6.539826 CACTCATTTTGCTCCATATGTAGTCA 59.460 38.462 1.24 0.00 0.00 3.41
2877 4141 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
2878 4142 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
2879 4143 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
2880 4144 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
2881 4145 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
2882 4146 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
2883 4147 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
2884 4148 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
2885 4149 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
2886 4150 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
2887 4151 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2888 4152 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2958 4222 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2959 4223 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2960 4224 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2961 4225 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2962 4226 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2963 4227 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2964 4228 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2965 4229 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2966 4230 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2967 4231 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2968 4232 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2969 4233 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2970 4234 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2971 4235 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2972 4236 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2973 4237 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2974 4238 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2975 4239 4.530875 CTTACTACTCCCTCCGTTCCTAA 58.469 47.826 0.00 0.00 0.00 2.69
2976 4240 3.117738 CCTTACTACTCCCTCCGTTCCTA 60.118 52.174 0.00 0.00 0.00 2.94
2977 4241 2.357986 CCTTACTACTCCCTCCGTTCCT 60.358 54.545 0.00 0.00 0.00 3.36
2978 4242 2.030371 CCTTACTACTCCCTCCGTTCC 58.970 57.143 0.00 0.00 0.00 3.62
2979 4243 2.732763 ACCTTACTACTCCCTCCGTTC 58.267 52.381 0.00 0.00 0.00 3.95
2980 4244 2.915657 ACCTTACTACTCCCTCCGTT 57.084 50.000 0.00 0.00 0.00 4.44
2981 4245 3.118531 TCTACCTTACTACTCCCTCCGT 58.881 50.000 0.00 0.00 0.00 4.69
2982 4246 3.853355 TCTACCTTACTACTCCCTCCG 57.147 52.381 0.00 0.00 0.00 4.63
2983 4247 3.827876 GCATCTACCTTACTACTCCCTCC 59.172 52.174 0.00 0.00 0.00 4.30
2984 4248 3.827876 GGCATCTACCTTACTACTCCCTC 59.172 52.174 0.00 0.00 0.00 4.30
2985 4249 3.751245 CGGCATCTACCTTACTACTCCCT 60.751 52.174 0.00 0.00 0.00 4.20
2986 4250 2.557490 CGGCATCTACCTTACTACTCCC 59.443 54.545 0.00 0.00 0.00 4.30
2987 4251 3.004524 CACGGCATCTACCTTACTACTCC 59.995 52.174 0.00 0.00 0.00 3.85
2988 4252 3.550436 GCACGGCATCTACCTTACTACTC 60.550 52.174 0.00 0.00 0.00 2.59
2989 4253 2.361438 GCACGGCATCTACCTTACTACT 59.639 50.000 0.00 0.00 0.00 2.57
2990 4254 2.361438 AGCACGGCATCTACCTTACTAC 59.639 50.000 0.00 0.00 0.00 2.73
3092 4363 0.962356 AAGTTGAGGCGCCCATCAAG 60.962 55.000 26.36 0.00 36.16 3.02
3101 4372 2.613595 TGCAGCATATTAAGTTGAGGCG 59.386 45.455 0.00 0.00 0.00 5.52
3184 4455 1.545428 GCTGAAGTCATCAACCCACCA 60.545 52.381 0.00 0.00 37.67 4.17
3208 4479 5.674525 CCACCAGATTTCAACAGATAGCTA 58.325 41.667 0.00 0.00 0.00 3.32
3418 4689 3.582647 TGCTTAGAAACACAGATCTGGGA 59.417 43.478 31.53 5.50 37.45 4.37
3472 4743 5.355350 GGAGAGGAAAAATATGTGTCAGTGG 59.645 44.000 0.00 0.00 0.00 4.00
3718 4989 1.061887 ACACTTGTTGCGCACGTTC 59.938 52.632 11.12 1.38 0.00 3.95
3772 5043 2.599281 TCGTCCTTGGAGGCGTGA 60.599 61.111 4.63 0.00 36.65 4.35
3800 5071 2.668001 CGCCGATCAGATCAGATCAGAC 60.668 54.545 23.21 12.95 43.61 3.51
3805 5076 1.291588 GCCGCCGATCAGATCAGAT 59.708 57.895 11.12 0.00 0.00 2.90
3806 5077 2.730733 GCCGCCGATCAGATCAGA 59.269 61.111 11.12 0.00 0.00 3.27
3807 5078 2.356793 GGCCGCCGATCAGATCAG 60.357 66.667 11.12 0.00 0.00 2.90
3808 5079 3.928779 GGGCCGCCGATCAGATCA 61.929 66.667 11.12 0.00 0.00 2.92
3809 5080 3.581687 GAGGGCCGCCGATCAGATC 62.582 68.421 2.55 0.00 0.00 2.75
3821 5092 3.083997 ATCGACACCAGGAGGGCC 61.084 66.667 0.00 0.00 42.05 5.80
3832 5103 1.069513 ACACCGAAACCAAGATCGACA 59.930 47.619 0.00 0.00 41.43 4.35
3852 5123 8.821147 TTAAAGTTTCTTTCTAGCGATACACA 57.179 30.769 0.00 0.00 0.00 3.72
3942 5219 7.714813 TGCATAAGTTATACAGCAAGCATTCTA 59.285 33.333 4.38 0.00 0.00 2.10
4022 5299 9.219603 TGTACAGAATTATTCAGGAGTTCTTTG 57.780 33.333 7.74 0.00 0.00 2.77
4092 5369 0.875059 AAGTACCTCGCAAGCAAAGC 59.125 50.000 0.00 0.00 37.18 3.51
4115 5394 8.592809 TGGCACTATTTTCCAATTTCTTTACAT 58.407 29.630 0.00 0.00 0.00 2.29
4127 5406 1.176527 GCAGCTGGCACTATTTTCCA 58.823 50.000 17.12 0.00 43.97 3.53
4138 5417 1.461559 AGAAATGAGAAGCAGCTGGC 58.538 50.000 17.12 7.98 45.30 4.85
4139 5418 3.079578 TGAAGAAATGAGAAGCAGCTGG 58.920 45.455 17.12 0.00 0.00 4.85
4140 5419 4.474113 GTTGAAGAAATGAGAAGCAGCTG 58.526 43.478 10.11 10.11 0.00 4.24
4142 5421 3.254166 TGGTTGAAGAAATGAGAAGCAGC 59.746 43.478 0.00 0.00 0.00 5.25
4144 5423 4.464008 ACTGGTTGAAGAAATGAGAAGCA 58.536 39.130 0.00 0.00 0.00 3.91
4145 5424 6.560253 TTACTGGTTGAAGAAATGAGAAGC 57.440 37.500 0.00 0.00 0.00 3.86
4146 5425 8.571336 ACAATTACTGGTTGAAGAAATGAGAAG 58.429 33.333 0.00 0.00 0.00 2.85
4147 5426 8.463930 ACAATTACTGGTTGAAGAAATGAGAA 57.536 30.769 0.00 0.00 0.00 2.87
4148 5427 8.999431 GTACAATTACTGGTTGAAGAAATGAGA 58.001 33.333 0.00 0.00 0.00 3.27
4149 5428 9.003658 AGTACAATTACTGGTTGAAGAAATGAG 57.996 33.333 0.00 0.00 37.15 2.90
4174 7936 6.408107 GGGATTACCTAGAAGACCACTTAG 57.592 45.833 0.00 0.00 34.58 2.18
4195 7957 6.652481 TCGTATCGTACTATTAGGAAAGAGGG 59.348 42.308 0.00 0.00 0.00 4.30
4216 7978 2.679837 GTCCATGGTACTCGAACTCGTA 59.320 50.000 12.58 0.00 40.80 3.43
4217 7979 1.471684 GTCCATGGTACTCGAACTCGT 59.528 52.381 12.58 0.00 40.80 4.18
4218 7980 1.202268 GGTCCATGGTACTCGAACTCG 60.202 57.143 12.58 0.00 41.45 4.18
4219 7981 1.822990 TGGTCCATGGTACTCGAACTC 59.177 52.381 12.58 0.00 0.00 3.01
4220 7982 1.825474 CTGGTCCATGGTACTCGAACT 59.175 52.381 12.58 0.00 0.00 3.01
4332 8095 0.540133 TGTGGCTGCCATGTCAACAT 60.540 50.000 26.22 0.00 35.28 2.71
4335 8098 1.252215 CCATGTGGCTGCCATGTCAA 61.252 55.000 26.22 8.91 38.39 3.18
4347 8110 1.679153 GGGTAAAATACGGCCATGTGG 59.321 52.381 2.24 0.00 38.53 4.17
4354 8117 2.423446 TTGAGGGGGTAAAATACGGC 57.577 50.000 0.00 0.00 0.00 5.68
4359 8122 5.686387 GCAAAACTGTTTGAGGGGGTAAAAT 60.686 40.000 6.53 0.00 45.99 1.82
4364 8127 1.119684 GCAAAACTGTTTGAGGGGGT 58.880 50.000 6.53 0.00 45.99 4.95
4368 8131 6.279882 TCAAATAAGGCAAAACTGTTTGAGG 58.720 36.000 6.53 1.41 45.99 3.86
4426 8190 4.563140 TTAGGCCAAGTAACCGAAGAAT 57.437 40.909 5.01 0.00 0.00 2.40
4431 8195 1.673626 CGCTTTAGGCCAAGTAACCGA 60.674 52.381 5.01 0.00 37.74 4.69
4432 8196 0.725117 CGCTTTAGGCCAAGTAACCG 59.275 55.000 5.01 0.00 37.74 4.44
4433 8197 1.467342 CACGCTTTAGGCCAAGTAACC 59.533 52.381 5.01 0.00 37.74 2.85
4437 8201 0.821711 TTGCACGCTTTAGGCCAAGT 60.822 50.000 5.01 0.00 37.74 3.16
4459 8223 8.519526 TGTGTCATTTATCCATTAACTCAAACC 58.480 33.333 0.00 0.00 0.00 3.27
4475 8239 6.303054 TCCCAAGAGTGAAATGTGTCATTTA 58.697 36.000 7.54 0.00 0.00 1.40
4476 8240 5.139727 TCCCAAGAGTGAAATGTGTCATTT 58.860 37.500 7.32 7.32 0.00 2.32
4477 8241 4.728772 TCCCAAGAGTGAAATGTGTCATT 58.271 39.130 0.00 0.00 0.00 2.57
4480 8244 4.154918 GTCATCCCAAGAGTGAAATGTGTC 59.845 45.833 0.00 0.00 0.00 3.67
4481 8245 4.074970 GTCATCCCAAGAGTGAAATGTGT 58.925 43.478 0.00 0.00 0.00 3.72
4483 8247 4.074970 GTGTCATCCCAAGAGTGAAATGT 58.925 43.478 0.00 0.00 0.00 2.71
4487 8251 3.617288 CGATGTGTCATCCCAAGAGTGAA 60.617 47.826 4.48 0.00 0.00 3.18
4488 8252 2.094026 CGATGTGTCATCCCAAGAGTGA 60.094 50.000 4.48 0.00 0.00 3.41
4490 8254 1.208052 CCGATGTGTCATCCCAAGAGT 59.792 52.381 4.48 0.00 0.00 3.24
4492 8256 0.541392 CCCGATGTGTCATCCCAAGA 59.459 55.000 4.48 0.00 0.00 3.02
4493 8257 0.464373 CCCCGATGTGTCATCCCAAG 60.464 60.000 4.48 0.00 0.00 3.61
4494 8258 1.607071 CCCCGATGTGTCATCCCAA 59.393 57.895 4.48 0.00 0.00 4.12
4495 8259 3.042733 GCCCCGATGTGTCATCCCA 62.043 63.158 4.48 0.00 0.00 4.37
4501 8265 0.605319 TGAACAAGCCCCGATGTGTC 60.605 55.000 0.00 0.00 0.00 3.67
4502 8266 0.038166 ATGAACAAGCCCCGATGTGT 59.962 50.000 0.00 0.00 0.00 3.72
4503 8267 0.452987 CATGAACAAGCCCCGATGTG 59.547 55.000 0.00 0.00 0.00 3.21
4505 8269 1.335810 CATCATGAACAAGCCCCGATG 59.664 52.381 0.00 0.00 0.00 3.84
4506 8270 1.212688 TCATCATGAACAAGCCCCGAT 59.787 47.619 0.00 0.00 0.00 4.18
4508 8272 1.402968 CTTCATCATGAACAAGCCCCG 59.597 52.381 0.00 0.00 32.21 5.73
4509 8273 2.686915 CTCTTCATCATGAACAAGCCCC 59.313 50.000 0.00 0.00 32.21 5.80
4515 8373 3.840078 TCCTCACCTCTTCATCATGAACA 59.160 43.478 0.00 0.00 32.21 3.18
4523 8381 1.901085 GCCGTCCTCACCTCTTCAT 59.099 57.895 0.00 0.00 0.00 2.57
4586 8444 4.271816 CCCCATCGCTCGTCCTCG 62.272 72.222 0.00 0.00 38.55 4.63
4651 8509 1.269723 CGCATACTCTCCGATAAGGCA 59.730 52.381 0.00 0.00 40.77 4.75
4659 8517 0.800683 TTTGTCGCGCATACTCTCCG 60.801 55.000 8.75 0.00 0.00 4.63
4666 8524 3.433709 CCATTCAATTTTGTCGCGCATA 58.566 40.909 8.75 0.00 0.00 3.14
4689 8548 6.205784 GTCGTTTGATGAGATTCCAAAACAA 58.794 36.000 0.00 0.00 32.44 2.83
4713 8572 1.227734 ACGGTCAAGGGTGGTTTCG 60.228 57.895 0.00 0.00 0.00 3.46
4718 8577 0.324943 AATCTCACGGTCAAGGGTGG 59.675 55.000 0.00 0.00 34.93 4.61
4754 8613 1.237285 ATTTGTCAGACCAGCCGCAC 61.237 55.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.