Multiple sequence alignment - TraesCS5A01G324400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G324400 chr5A 100.000 4469 0 0 1 4469 535666913 535671381 0.000000e+00 8253.0
1 TraesCS5A01G324400 chr5A 83.557 1788 150 53 1567 3307 698368728 698370418 0.000000e+00 1541.0
2 TraesCS5A01G324400 chr5A 91.250 80 7 0 3938 4017 654408248 654408169 4.730000e-20 110.0
3 TraesCS5A01G324400 chr5A 88.000 75 9 0 3865 3939 535786871 535786945 6.160000e-14 89.8
4 TraesCS5A01G324400 chr5A 100.000 30 0 0 1387 1416 662342767 662342738 6.240000e-04 56.5
5 TraesCS5A01G324400 chr5D 94.048 1361 52 8 2434 3766 422430531 422431890 0.000000e+00 2037.0
6 TraesCS5A01G324400 chr5D 92.092 822 39 11 1115 1936 422429219 422430014 0.000000e+00 1134.0
7 TraesCS5A01G324400 chr5D 96.732 306 7 1 2139 2441 422430016 422430321 1.430000e-139 507.0
8 TraesCS5A01G324400 chr5D 81.644 365 32 9 717 1068 422428445 422428787 2.050000e-68 270.0
9 TraesCS5A01G324400 chr5D 92.405 79 5 1 3757 3835 9946211 9946288 1.310000e-20 111.0
10 TraesCS5A01G324400 chr5D 89.286 84 7 2 3757 3839 369009447 369009365 2.200000e-18 104.0
11 TraesCS5A01G324400 chr5D 86.207 87 12 0 3939 4025 468046076 468046162 1.320000e-15 95.3
12 TraesCS5A01G324400 chr5D 86.585 82 11 0 3858 3939 422456403 422456484 1.710000e-14 91.6
13 TraesCS5A01G324400 chr5B 93.187 1277 53 4 2523 3766 509186506 509187781 0.000000e+00 1845.0
14 TraesCS5A01G324400 chr5B 95.246 610 20 4 1920 2525 509185790 509186394 0.000000e+00 957.0
15 TraesCS5A01G324400 chr5B 96.063 508 18 1 1415 1922 509185203 509185708 0.000000e+00 826.0
16 TraesCS5A01G324400 chr5B 85.665 579 39 23 870 1408 509184481 509185055 1.800000e-158 569.0
17 TraesCS5A01G324400 chr5B 86.232 138 13 5 739 872 406220761 406220626 1.300000e-30 145.0
18 TraesCS5A01G324400 chr5B 93.506 77 5 0 3863 3939 509210060 509210136 1.020000e-21 115.0
19 TraesCS5A01G324400 chr5B 88.889 81 9 0 3859 3939 509205997 509206077 2.840000e-17 100.0
20 TraesCS5A01G324400 chr5B 90.141 71 7 0 3864 3934 509103882 509103952 4.760000e-15 93.5
21 TraesCS5A01G324400 chr5B 87.179 78 10 0 3862 3939 509470504 509470581 6.160000e-14 89.8
22 TraesCS5A01G324400 chr6A 99.574 705 3 0 1 705 71026361 71025657 0.000000e+00 1286.0
23 TraesCS5A01G324400 chr6A 99.018 713 7 0 1 713 71024311 71023599 0.000000e+00 1279.0
24 TraesCS5A01G324400 chr6A 97.608 418 5 4 4053 4469 204386503 204386090 0.000000e+00 712.0
25 TraesCS5A01G324400 chr6A 91.946 149 6 3 4072 4219 150134491 150134634 2.110000e-48 204.0
26 TraesCS5A01G324400 chr6A 88.235 136 14 2 738 872 606411781 606411915 1.290000e-35 161.0
27 TraesCS5A01G324400 chr6A 97.727 88 2 0 3947 4034 204386577 204386490 7.740000e-33 152.0
28 TraesCS5A01G324400 chr6A 93.750 96 4 1 3939 4034 150134395 150134488 4.660000e-30 143.0
29 TraesCS5A01G324400 chr6A 89.412 85 8 1 789 872 575324281 575324197 6.110000e-19 106.0
30 TraesCS5A01G324400 chr2A 99.157 712 6 0 1 712 74243030 74242319 0.000000e+00 1282.0
31 TraesCS5A01G324400 chr2A 86.624 157 16 3 710 862 81760798 81760643 7.690000e-38 169.0
32 TraesCS5A01G324400 chr2A 88.421 95 9 2 3940 4034 538390677 538390769 3.650000e-21 113.0
33 TraesCS5A01G324400 chr2A 89.873 79 7 1 3939 4016 761804586 761804664 2.840000e-17 100.0
34 TraesCS5A01G324400 chr6B 99.155 710 6 0 1 710 640867537 640868246 0.000000e+00 1279.0
35 TraesCS5A01G324400 chr6B 86.429 140 17 2 707 845 11237724 11237862 7.740000e-33 152.0
36 TraesCS5A01G324400 chr4B 99.155 710 6 0 1 710 479220225 479219516 0.000000e+00 1279.0
37 TraesCS5A01G324400 chr4B 99.153 708 6 0 1 708 92976007 92976714 0.000000e+00 1275.0
38 TraesCS5A01G324400 chr4B 92.188 128 7 1 4345 4469 657996929 657997056 1.280000e-40 178.0
39 TraesCS5A01G324400 chr4B 86.765 136 14 4 738 871 112033172 112033305 1.000000e-31 148.0
40 TraesCS5A01G324400 chr1B 99.154 709 6 0 1 709 449245126 449244418 0.000000e+00 1277.0
41 TraesCS5A01G324400 chr1B 86.420 162 18 3 710 870 217285934 217286092 1.650000e-39 174.0
42 TraesCS5A01G324400 chr1B 90.909 77 5 1 4345 4419 444930508 444930432 7.910000e-18 102.0
43 TraesCS5A01G324400 chr7B 99.153 708 6 0 1 708 463479842 463479135 0.000000e+00 1275.0
44 TraesCS5A01G324400 chr7B 94.783 115 5 1 4072 4185 307283126 307283240 1.280000e-40 178.0
45 TraesCS5A01G324400 chr7B 87.413 143 17 1 4053 4194 678364465 678364323 3.580000e-36 163.0
46 TraesCS5A01G324400 chr2B 99.017 712 6 1 1 711 781190192 781190903 0.000000e+00 1275.0
47 TraesCS5A01G324400 chr2B 86.957 92 11 1 3939 4030 247871833 247871743 7.910000e-18 102.0
48 TraesCS5A01G324400 chr4D 85.714 1099 96 20 2570 3636 509504279 509505348 0.000000e+00 1103.0
49 TraesCS5A01G324400 chr4D 84.211 323 36 8 2144 2453 509500763 509501083 2.610000e-77 300.0
50 TraesCS5A01G324400 chr4D 93.421 76 4 1 4345 4419 352136504 352136429 1.310000e-20 111.0
51 TraesCS5A01G324400 chr4D 92.208 77 4 2 3757 3833 46613653 46613727 1.700000e-19 108.0
52 TraesCS5A01G324400 chr4D 92.208 77 5 1 3757 3833 346207249 346207174 1.700000e-19 108.0
53 TraesCS5A01G324400 chr4D 77.165 127 17 6 1293 1416 481167182 481167299 3.730000e-06 63.9
54 TraesCS5A01G324400 chr7D 85.826 642 64 10 1525 2151 356895583 356894954 0.000000e+00 656.0
55 TraesCS5A01G324400 chr7D 92.308 78 5 1 3757 3834 576687679 576687755 4.730000e-20 110.0
56 TraesCS5A01G324400 chr7D 85.106 94 12 2 3942 4034 138804483 138804391 1.320000e-15 95.3
57 TraesCS5A01G324400 chr7A 84.891 642 69 9 1525 2151 386358866 386359494 1.370000e-174 623.0
58 TraesCS5A01G324400 chr6D 83.439 157 18 7 720 872 31739258 31739106 6.030000e-29 139.0
59 TraesCS5A01G324400 chr6D 92.208 77 5 1 3757 3833 47662709 47662634 1.700000e-19 108.0
60 TraesCS5A01G324400 chr6D 92.208 77 5 1 3757 3833 47663507 47663582 1.700000e-19 108.0
61 TraesCS5A01G324400 chr6D 91.139 79 6 1 3939 4016 400722423 400722345 6.110000e-19 106.0
62 TraesCS5A01G324400 chr2D 91.250 80 6 1 3757 3836 624240059 624239981 1.700000e-19 108.0
63 TraesCS5A01G324400 chr4A 89.286 84 7 2 3757 3839 500942211 500942293 2.200000e-18 104.0
64 TraesCS5A01G324400 chr4A 89.610 77 6 1 4345 4419 673784471 673784395 3.680000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G324400 chr5A 535666913 535671381 4468 False 8253.00 8253 100.00000 1 4469 1 chr5A.!!$F1 4468
1 TraesCS5A01G324400 chr5A 698368728 698370418 1690 False 1541.00 1541 83.55700 1567 3307 1 chr5A.!!$F3 1740
2 TraesCS5A01G324400 chr5D 422428445 422431890 3445 False 987.00 2037 91.12900 717 3766 4 chr5D.!!$F4 3049
3 TraesCS5A01G324400 chr5B 509184481 509187781 3300 False 1049.25 1845 92.54025 870 3766 4 chr5B.!!$F3 2896
4 TraesCS5A01G324400 chr6A 71023599 71026361 2762 True 1282.50 1286 99.29600 1 713 2 chr6A.!!$R2 712
5 TraesCS5A01G324400 chr2A 74242319 74243030 711 True 1282.00 1282 99.15700 1 712 1 chr2A.!!$R1 711
6 TraesCS5A01G324400 chr6B 640867537 640868246 709 False 1279.00 1279 99.15500 1 710 1 chr6B.!!$F2 709
7 TraesCS5A01G324400 chr4B 479219516 479220225 709 True 1279.00 1279 99.15500 1 710 1 chr4B.!!$R1 709
8 TraesCS5A01G324400 chr4B 92976007 92976714 707 False 1275.00 1275 99.15300 1 708 1 chr4B.!!$F1 707
9 TraesCS5A01G324400 chr1B 449244418 449245126 708 True 1277.00 1277 99.15400 1 709 1 chr1B.!!$R2 708
10 TraesCS5A01G324400 chr7B 463479135 463479842 707 True 1275.00 1275 99.15300 1 708 1 chr7B.!!$R1 707
11 TraesCS5A01G324400 chr2B 781190192 781190903 711 False 1275.00 1275 99.01700 1 711 1 chr2B.!!$F1 710
12 TraesCS5A01G324400 chr4D 509500763 509505348 4585 False 701.50 1103 84.96250 2144 3636 2 chr4D.!!$F3 1492
13 TraesCS5A01G324400 chr7D 356894954 356895583 629 True 656.00 656 85.82600 1525 2151 1 chr7D.!!$R2 626
14 TraesCS5A01G324400 chr7A 386358866 386359494 628 False 623.00 623 84.89100 1525 2151 1 chr7A.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 1172 0.742505 CATGTGGCATAGCTGGTTGG 59.257 55.0 0.00 0.00 0.00 3.77 F
1270 2152 0.108992 TTCGTTACTGCTACCGCCTG 60.109 55.0 0.00 0.00 34.43 4.85 F
2919 8130 1.063031 GAAAAACGGCAAGCTCATGC 58.937 50.0 1.52 1.52 45.67 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 3966 0.746659 AAACACAGCCTTGCAAGACC 59.253 50.0 28.05 17.17 0.00 3.85 R
3127 8338 0.533032 AAGCGTTAGCCTCTCCTGTC 59.467 55.0 0.00 0.00 46.67 3.51 R
4150 9394 0.036732 TCTTGGGCTGCTGGTTAGTG 59.963 55.0 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
713 714 7.667635 TCAGTCATTAGGAGTAGAGATATGTGG 59.332 40.741 0.00 0.00 0.00 4.17
715 716 6.948886 GTCATTAGGAGTAGAGATATGTGGGA 59.051 42.308 0.00 0.00 0.00 4.37
718 719 5.607168 AGGAGTAGAGATATGTGGGATCA 57.393 43.478 0.00 0.00 0.00 2.92
729 730 3.286329 TGTGGGATCATCACCTTCATG 57.714 47.619 13.54 0.00 34.46 3.07
739 740 8.522830 GGATCATCACCTTCATGTAAAAAGAAA 58.477 33.333 0.00 0.00 0.00 2.52
802 1135 9.516314 AATATATTCTAAAAGCTTTTTCACCGC 57.484 29.630 28.21 0.00 0.00 5.68
810 1143 3.140225 TTTTTCACCGCGGCCAACC 62.140 57.895 28.58 0.00 0.00 3.77
819 1152 4.347453 CGGCCAACCAGCTTGTGC 62.347 66.667 2.24 0.00 40.05 4.57
822 1155 2.576832 GCCAACCAGCTTGTGCCAT 61.577 57.895 0.00 0.00 40.80 4.40
839 1172 0.742505 CATGTGGCATAGCTGGTTGG 59.257 55.000 0.00 0.00 0.00 3.77
841 1174 2.044053 TGGCATAGCTGGTTGGCC 60.044 61.111 14.30 12.70 44.82 5.36
842 1175 2.834968 GGCATAGCTGGTTGGCCC 60.835 66.667 0.00 0.00 38.70 5.80
896 1230 5.964887 TTTCGCAAAAGAAAAAGATGTGG 57.035 34.783 0.00 0.00 37.20 4.17
934 1268 1.579429 GGAAACAACGCAATCGGCT 59.421 52.632 0.00 0.00 41.67 5.52
1092 1581 4.842091 CGCGGTACCTCGTTCCCG 62.842 72.222 16.14 0.00 43.22 5.14
1095 1584 4.503314 GGTACCTCGTTCCCGCCG 62.503 72.222 4.06 0.00 0.00 6.46
1096 1585 4.503314 GTACCTCGTTCCCGCCGG 62.503 72.222 0.00 0.00 0.00 6.13
1122 1996 1.345715 CCACTCCCCATACACCTCCC 61.346 65.000 0.00 0.00 0.00 4.30
1255 2137 1.282248 CGCATCGTCCACTGTTTCGT 61.282 55.000 0.00 0.00 0.00 3.85
1270 2152 0.108992 TTCGTTACTGCTACCGCCTG 60.109 55.000 0.00 0.00 34.43 4.85
1283 2165 2.163390 CGCCTGTCTGTCATCTGCG 61.163 63.158 0.00 0.00 34.27 5.18
1301 2183 2.669569 TCAGCGGCTGCAGGTTTC 60.670 61.111 24.78 0.00 46.23 2.78
1331 2213 5.105997 CCAGCCTTTCTAGTTGATTTCTTGG 60.106 44.000 0.00 0.00 0.00 3.61
1431 2454 1.066422 CAAGCGCGCAGATCCTCTA 59.934 57.895 35.10 0.00 0.00 2.43
1482 2505 2.568062 TGGGTCGTTTCATTAGTGCCTA 59.432 45.455 0.00 0.00 0.00 3.93
1701 2841 2.675317 CGGTTCTTCAGGTGATCTGTCC 60.675 54.545 0.00 0.00 43.76 4.02
1780 3503 5.694995 TCCATTTCCAGATCATAAGGTTCC 58.305 41.667 0.00 0.00 0.00 3.62
1847 3580 3.686016 ACTCACAACTCACAAGGTTTGT 58.314 40.909 0.00 0.00 46.75 2.83
1949 3770 3.014036 CTGTTTGCGTCGTGCTGT 58.986 55.556 0.00 0.00 46.63 4.40
2095 3928 7.581213 TGTAACTCAAACAAAGACATTGGAT 57.419 32.000 0.00 0.00 43.66 3.41
2244 4082 4.290093 AGGGATGTTCTACTAGATGTGCA 58.710 43.478 0.00 0.00 0.00 4.57
2344 4189 9.601217 GTCCATGTTCAGTTTCAGTTAGTATAT 57.399 33.333 0.00 0.00 0.00 0.86
2721 7930 9.683069 CATGCAATCAATATAACCTTAAGAACC 57.317 33.333 3.36 0.00 0.00 3.62
2919 8130 1.063031 GAAAAACGGCAAGCTCATGC 58.937 50.000 1.52 1.52 45.67 4.06
2948 8159 3.312404 TTCAGTGCTGAAGACAGGC 57.688 52.632 10.26 0.00 43.90 4.85
3091 8302 1.534595 GCTGCAGAGAGGAAACTTGTG 59.465 52.381 20.43 0.00 44.43 3.33
3152 8363 0.247736 AGAGGCTAACGCTTCCACAG 59.752 55.000 0.00 0.00 42.73 3.66
3168 8379 2.507484 CACAGCTCCTTGATCCACAAA 58.493 47.619 0.00 0.00 38.08 2.83
3325 8536 0.875908 TGTGCGACTGTGAACTGCTC 60.876 55.000 0.00 0.00 0.00 4.26
3392 8622 1.236616 TTCAGAGGTTGTGCGCCATG 61.237 55.000 4.18 0.00 0.00 3.66
3434 8666 2.039746 TGTGGAACCCTACATTGAGGTG 59.960 50.000 0.00 0.00 34.45 4.00
3469 8701 5.827797 ACAGAAATGAACTTTGCTGGTCTTA 59.172 36.000 11.38 0.00 31.64 2.10
3641 8885 3.988379 TTTTGATGCAATATCCTCGCC 57.012 42.857 0.00 0.00 0.00 5.54
3646 8890 4.713553 TGATGCAATATCCTCGCCTTTTA 58.286 39.130 0.00 0.00 0.00 1.52
3650 8894 3.146847 CAATATCCTCGCCTTTTACCCC 58.853 50.000 0.00 0.00 0.00 4.95
3705 8949 6.591935 ACATGGATATGTAAGTTAGGTGTGG 58.408 40.000 0.00 0.00 45.45 4.17
3738 8982 2.774234 AGTGGAGTGTGCTATTAGGCAT 59.226 45.455 0.00 0.00 44.34 4.40
3766 9010 5.975693 AATGTTCTATTCTTTCCCGCAAA 57.024 34.783 0.00 0.00 0.00 3.68
3767 9011 5.975693 ATGTTCTATTCTTTCCCGCAAAA 57.024 34.783 0.00 0.00 0.00 2.44
3768 9012 5.776173 TGTTCTATTCTTTCCCGCAAAAA 57.224 34.783 0.00 0.00 0.00 1.94
3792 9036 7.797038 AAATCGTAAAGTGGTAGTTTTCTGT 57.203 32.000 0.00 0.00 0.00 3.41
3793 9037 7.417496 AATCGTAAAGTGGTAGTTTTCTGTC 57.583 36.000 0.00 0.00 0.00 3.51
3794 9038 5.904941 TCGTAAAGTGGTAGTTTTCTGTCA 58.095 37.500 0.00 0.00 0.00 3.58
3795 9039 5.750067 TCGTAAAGTGGTAGTTTTCTGTCAC 59.250 40.000 0.00 0.00 35.78 3.67
3796 9040 5.332055 CGTAAAGTGGTAGTTTTCTGTCACG 60.332 44.000 0.00 0.00 38.33 4.35
3797 9041 3.814005 AGTGGTAGTTTTCTGTCACGT 57.186 42.857 0.00 0.00 38.33 4.49
3798 9042 4.133013 AGTGGTAGTTTTCTGTCACGTT 57.867 40.909 0.00 0.00 38.33 3.99
3799 9043 4.510571 AGTGGTAGTTTTCTGTCACGTTT 58.489 39.130 0.00 0.00 38.33 3.60
3800 9044 4.569564 AGTGGTAGTTTTCTGTCACGTTTC 59.430 41.667 0.00 0.00 38.33 2.78
3801 9045 3.872771 TGGTAGTTTTCTGTCACGTTTCC 59.127 43.478 0.00 0.00 0.00 3.13
3802 9046 3.060070 GGTAGTTTTCTGTCACGTTTCCG 60.060 47.826 0.00 0.00 40.83 4.30
3813 9057 1.670791 ACGTTTCCGTGAAATGTGGT 58.329 45.000 17.80 6.52 46.03 4.16
3814 9058 2.836262 ACGTTTCCGTGAAATGTGGTA 58.164 42.857 17.80 0.00 46.03 3.25
3815 9059 3.204526 ACGTTTCCGTGAAATGTGGTAA 58.795 40.909 17.80 0.00 46.03 2.85
3816 9060 3.816523 ACGTTTCCGTGAAATGTGGTAAT 59.183 39.130 17.80 0.06 46.03 1.89
3817 9061 4.276431 ACGTTTCCGTGAAATGTGGTAATT 59.724 37.500 17.80 0.00 46.03 1.40
3818 9062 5.216648 CGTTTCCGTGAAATGTGGTAATTT 58.783 37.500 9.25 0.00 34.83 1.82
3819 9063 5.688176 CGTTTCCGTGAAATGTGGTAATTTT 59.312 36.000 9.25 0.00 34.83 1.82
3820 9064 6.199342 CGTTTCCGTGAAATGTGGTAATTTTT 59.801 34.615 9.25 0.00 34.83 1.94
3844 9088 8.882415 TTTATTAAATACTCGACCACTCATCC 57.118 34.615 0.00 0.00 0.00 3.51
3845 9089 6.732896 ATTAAATACTCGACCACTCATCCT 57.267 37.500 0.00 0.00 0.00 3.24
3846 9090 7.834881 ATTAAATACTCGACCACTCATCCTA 57.165 36.000 0.00 0.00 0.00 2.94
3847 9091 7.649533 TTAAATACTCGACCACTCATCCTAA 57.350 36.000 0.00 0.00 0.00 2.69
3848 9092 5.776173 AATACTCGACCACTCATCCTAAG 57.224 43.478 0.00 0.00 0.00 2.18
3849 9093 1.751924 ACTCGACCACTCATCCTAAGC 59.248 52.381 0.00 0.00 0.00 3.09
3850 9094 1.751351 CTCGACCACTCATCCTAAGCA 59.249 52.381 0.00 0.00 0.00 3.91
3851 9095 1.476891 TCGACCACTCATCCTAAGCAC 59.523 52.381 0.00 0.00 0.00 4.40
3852 9096 1.799181 CGACCACTCATCCTAAGCACG 60.799 57.143 0.00 0.00 0.00 5.34
3853 9097 1.204941 GACCACTCATCCTAAGCACGT 59.795 52.381 0.00 0.00 0.00 4.49
3854 9098 2.426024 GACCACTCATCCTAAGCACGTA 59.574 50.000 0.00 0.00 0.00 3.57
3855 9099 2.165845 ACCACTCATCCTAAGCACGTAC 59.834 50.000 0.00 0.00 0.00 3.67
3856 9100 2.427453 CCACTCATCCTAAGCACGTACT 59.573 50.000 0.00 0.00 0.00 2.73
3857 9101 3.439293 CACTCATCCTAAGCACGTACTG 58.561 50.000 0.00 0.00 0.00 2.74
3858 9102 3.090037 ACTCATCCTAAGCACGTACTGT 58.910 45.455 0.00 0.00 0.00 3.55
3859 9103 4.095932 CACTCATCCTAAGCACGTACTGTA 59.904 45.833 0.00 0.00 0.00 2.74
3860 9104 4.888239 ACTCATCCTAAGCACGTACTGTAT 59.112 41.667 0.00 0.00 0.00 2.29
3861 9105 5.183014 TCATCCTAAGCACGTACTGTATG 57.817 43.478 5.51 5.51 0.00 2.39
3862 9106 4.643334 TCATCCTAAGCACGTACTGTATGT 59.357 41.667 6.85 6.85 0.00 2.29
3863 9107 5.824097 TCATCCTAAGCACGTACTGTATGTA 59.176 40.000 12.05 0.00 0.00 2.29
3864 9108 5.490139 TCCTAAGCACGTACTGTATGTAC 57.510 43.478 12.05 7.27 45.93 2.90
3872 9116 2.519377 TACTGTATGTACATGGCGCC 57.481 50.000 22.73 22.73 35.36 6.53
3873 9117 0.529773 ACTGTATGTACATGGCGCCG 60.530 55.000 23.90 11.34 35.36 6.46
3874 9118 1.831389 CTGTATGTACATGGCGCCGC 61.831 60.000 23.90 0.00 35.36 6.53
3894 9138 2.811799 GCCGTTGTGGGTTTTGCT 59.188 55.556 0.00 0.00 38.63 3.91
3895 9139 1.591327 GCCGTTGTGGGTTTTGCTG 60.591 57.895 0.00 0.00 38.63 4.41
3896 9140 2.010582 GCCGTTGTGGGTTTTGCTGA 62.011 55.000 0.00 0.00 38.63 4.26
3897 9141 0.248866 CCGTTGTGGGTTTTGCTGAC 60.249 55.000 0.00 0.00 0.00 3.51
3898 9142 0.248866 CGTTGTGGGTTTTGCTGACC 60.249 55.000 0.00 0.00 36.41 4.02
3899 9143 1.111277 GTTGTGGGTTTTGCTGACCT 58.889 50.000 4.21 0.00 37.34 3.85
3900 9144 1.110442 TTGTGGGTTTTGCTGACCTG 58.890 50.000 4.21 0.00 37.34 4.00
3901 9145 1.363807 GTGGGTTTTGCTGACCTGC 59.636 57.895 4.21 0.00 37.34 4.85
3902 9146 1.109323 GTGGGTTTTGCTGACCTGCT 61.109 55.000 4.21 0.00 37.34 4.24
3903 9147 1.108727 TGGGTTTTGCTGACCTGCTG 61.109 55.000 4.21 0.00 37.34 4.41
3904 9148 0.823356 GGGTTTTGCTGACCTGCTGA 60.823 55.000 0.00 0.00 37.34 4.26
3905 9149 0.312102 GGTTTTGCTGACCTGCTGAC 59.688 55.000 0.00 0.00 34.27 3.51
3906 9150 0.040958 GTTTTGCTGACCTGCTGACG 60.041 55.000 0.00 0.00 0.00 4.35
3907 9151 1.165907 TTTTGCTGACCTGCTGACGG 61.166 55.000 0.00 0.00 0.00 4.79
3908 9152 2.038814 TTTGCTGACCTGCTGACGGA 62.039 55.000 0.00 0.00 0.00 4.69
3909 9153 2.125753 GCTGACCTGCTGACGGAG 60.126 66.667 0.00 0.00 0.00 4.63
3918 9162 4.803426 CTGACGGAGGCGCTGGAC 62.803 72.222 7.64 0.00 0.00 4.02
3929 9173 4.933064 GCTGGACGAGATCGCCCG 62.933 72.222 1.39 2.95 45.19 6.13
3930 9174 4.271816 CTGGACGAGATCGCCCGG 62.272 72.222 1.89 1.89 45.19 5.73
3958 9202 4.800554 GGGGCGGATCCACTATTG 57.199 61.111 13.41 0.00 34.56 1.90
3959 9203 1.073199 GGGGCGGATCCACTATTGG 59.927 63.158 13.41 0.00 45.56 3.16
3960 9204 1.705997 GGGGCGGATCCACTATTGGT 61.706 60.000 13.41 0.00 44.35 3.67
3961 9205 0.250338 GGGCGGATCCACTATTGGTC 60.250 60.000 13.41 0.00 44.35 4.02
3962 9206 0.468226 GGCGGATCCACTATTGGTCA 59.532 55.000 13.41 0.00 44.35 4.02
3963 9207 1.072331 GGCGGATCCACTATTGGTCAT 59.928 52.381 13.41 0.00 44.35 3.06
3964 9208 2.146342 GCGGATCCACTATTGGTCATG 58.854 52.381 13.41 0.00 44.35 3.07
3965 9209 2.771089 CGGATCCACTATTGGTCATGG 58.229 52.381 13.41 0.00 44.35 3.66
3966 9210 2.550855 CGGATCCACTATTGGTCATGGG 60.551 54.545 13.41 0.00 44.35 4.00
3967 9211 2.443255 GGATCCACTATTGGTCATGGGT 59.557 50.000 6.95 0.00 44.35 4.51
3968 9212 3.480470 GATCCACTATTGGTCATGGGTG 58.520 50.000 0.00 0.00 44.35 4.61
3969 9213 2.274542 TCCACTATTGGTCATGGGTGT 58.725 47.619 0.00 0.00 44.35 4.16
3970 9214 3.455849 TCCACTATTGGTCATGGGTGTA 58.544 45.455 0.00 0.00 44.35 2.90
3971 9215 3.199071 TCCACTATTGGTCATGGGTGTAC 59.801 47.826 0.00 0.00 44.35 2.90
3972 9216 3.054728 CCACTATTGGTCATGGGTGTACA 60.055 47.826 0.00 0.00 38.23 2.90
3973 9217 4.191544 CACTATTGGTCATGGGTGTACAG 58.808 47.826 0.00 0.00 0.00 2.74
3974 9218 4.081142 CACTATTGGTCATGGGTGTACAGA 60.081 45.833 0.00 0.00 0.00 3.41
3975 9219 4.721776 ACTATTGGTCATGGGTGTACAGAT 59.278 41.667 0.00 0.00 0.00 2.90
3976 9220 3.348647 TTGGTCATGGGTGTACAGATG 57.651 47.619 0.00 0.00 0.00 2.90
3977 9221 2.265367 TGGTCATGGGTGTACAGATGT 58.735 47.619 0.00 0.00 0.00 3.06
3978 9222 3.445987 TGGTCATGGGTGTACAGATGTA 58.554 45.455 0.00 0.00 0.00 2.29
3994 9238 7.214467 ACAGATGTACACCCAAAATTTACTG 57.786 36.000 0.00 0.00 0.00 2.74
3995 9239 6.092748 CAGATGTACACCCAAAATTTACTGC 58.907 40.000 0.00 0.00 0.00 4.40
3996 9240 5.772672 AGATGTACACCCAAAATTTACTGCA 59.227 36.000 0.00 0.00 0.00 4.41
3997 9241 5.854010 TGTACACCCAAAATTTACTGCAA 57.146 34.783 0.00 0.00 0.00 4.08
3998 9242 6.222038 TGTACACCCAAAATTTACTGCAAA 57.778 33.333 0.00 0.00 0.00 3.68
3999 9243 6.640518 TGTACACCCAAAATTTACTGCAAAA 58.359 32.000 0.00 0.00 0.00 2.44
4000 9244 7.103641 TGTACACCCAAAATTTACTGCAAAAA 58.896 30.769 0.00 0.00 0.00 1.94
4045 9289 8.934507 ATGACCGAAATACTTTGTTTCAAAAA 57.065 26.923 0.00 0.00 35.77 1.94
4090 9334 7.018635 AGAGTACTACTTTGAGAGATTACGC 57.981 40.000 0.00 0.00 0.00 4.42
4091 9335 6.598457 AGAGTACTACTTTGAGAGATTACGCA 59.402 38.462 0.00 0.00 0.00 5.24
4092 9336 6.787225 AGTACTACTTTGAGAGATTACGCAG 58.213 40.000 0.00 0.00 0.00 5.18
4093 9337 4.425520 ACTACTTTGAGAGATTACGCAGC 58.574 43.478 0.00 0.00 0.00 5.25
4094 9338 3.319137 ACTTTGAGAGATTACGCAGCA 57.681 42.857 0.00 0.00 0.00 4.41
4095 9339 3.257393 ACTTTGAGAGATTACGCAGCAG 58.743 45.455 0.00 0.00 0.00 4.24
4096 9340 1.645034 TTGAGAGATTACGCAGCAGC 58.355 50.000 0.00 0.00 37.42 5.25
4097 9341 0.820226 TGAGAGATTACGCAGCAGCT 59.180 50.000 0.00 0.00 39.10 4.24
4098 9342 1.202348 TGAGAGATTACGCAGCAGCTC 60.202 52.381 0.00 0.00 39.10 4.09
4099 9343 1.066908 GAGAGATTACGCAGCAGCTCT 59.933 52.381 0.00 0.00 39.22 4.09
4100 9344 1.066908 AGAGATTACGCAGCAGCTCTC 59.933 52.381 9.27 9.27 32.29 3.20
4101 9345 0.103937 AGATTACGCAGCAGCTCTCC 59.896 55.000 0.00 0.00 39.10 3.71
4102 9346 0.103937 GATTACGCAGCAGCTCTCCT 59.896 55.000 0.00 0.00 39.10 3.69
4103 9347 0.179089 ATTACGCAGCAGCTCTCCTG 60.179 55.000 0.00 0.00 44.67 3.86
4111 9355 3.164479 AGCTCTCCTGCTGGCAAA 58.836 55.556 4.42 0.00 42.33 3.68
4112 9356 1.303155 AGCTCTCCTGCTGGCAAAC 60.303 57.895 4.42 0.00 42.33 2.93
4113 9357 1.601759 GCTCTCCTGCTGGCAAACA 60.602 57.895 4.42 0.00 0.00 2.83
4126 9370 2.851805 GCAAACAGGCCAATAGTAGC 57.148 50.000 5.01 2.61 0.00 3.58
4132 9376 3.233355 GGCCAATAGTAGCCCATCG 57.767 57.895 0.00 0.00 43.76 3.84
4133 9377 0.321653 GGCCAATAGTAGCCCATCGG 60.322 60.000 0.00 0.00 43.76 4.18
4158 9402 2.434331 GGCACAGCCCACTAACCA 59.566 61.111 0.00 0.00 44.06 3.67
4159 9403 1.675641 GGCACAGCCCACTAACCAG 60.676 63.158 0.00 0.00 44.06 4.00
4160 9404 2.335712 GCACAGCCCACTAACCAGC 61.336 63.158 0.00 0.00 0.00 4.85
4161 9405 1.073025 CACAGCCCACTAACCAGCA 59.927 57.895 0.00 0.00 0.00 4.41
4162 9406 0.957395 CACAGCCCACTAACCAGCAG 60.957 60.000 0.00 0.00 0.00 4.24
4163 9407 2.042831 CAGCCCACTAACCAGCAGC 61.043 63.158 0.00 0.00 0.00 5.25
4164 9408 2.751837 GCCCACTAACCAGCAGCC 60.752 66.667 0.00 0.00 0.00 4.85
4165 9409 2.044946 CCCACTAACCAGCAGCCC 60.045 66.667 0.00 0.00 0.00 5.19
4166 9410 2.756400 CCACTAACCAGCAGCCCA 59.244 61.111 0.00 0.00 0.00 5.36
4167 9411 1.074775 CCACTAACCAGCAGCCCAA 59.925 57.895 0.00 0.00 0.00 4.12
4168 9412 0.962356 CCACTAACCAGCAGCCCAAG 60.962 60.000 0.00 0.00 0.00 3.61
4169 9413 0.036732 CACTAACCAGCAGCCCAAGA 59.963 55.000 0.00 0.00 0.00 3.02
4170 9414 0.326264 ACTAACCAGCAGCCCAAGAG 59.674 55.000 0.00 0.00 0.00 2.85
4171 9415 1.002134 TAACCAGCAGCCCAAGAGC 60.002 57.895 0.00 0.00 0.00 4.09
4172 9416 1.778017 TAACCAGCAGCCCAAGAGCA 61.778 55.000 0.00 0.00 34.23 4.26
4173 9417 2.750637 CCAGCAGCCCAAGAGCAG 60.751 66.667 0.00 0.00 34.23 4.24
4174 9418 3.441290 CAGCAGCCCAAGAGCAGC 61.441 66.667 0.00 0.00 44.85 5.25
4175 9419 3.962694 AGCAGCCCAAGAGCAGCA 61.963 61.111 3.76 0.00 46.72 4.41
4176 9420 2.987547 GCAGCCCAAGAGCAGCAA 60.988 61.111 0.00 0.00 44.02 3.91
4177 9421 2.960170 CAGCCCAAGAGCAGCAAC 59.040 61.111 0.00 0.00 34.23 4.17
4178 9422 2.670934 AGCCCAAGAGCAGCAACG 60.671 61.111 0.00 0.00 34.23 4.10
4179 9423 2.980233 GCCCAAGAGCAGCAACGT 60.980 61.111 0.00 0.00 0.00 3.99
4180 9424 2.555547 GCCCAAGAGCAGCAACGTT 61.556 57.895 0.00 0.00 0.00 3.99
4181 9425 1.234615 GCCCAAGAGCAGCAACGTTA 61.235 55.000 0.00 0.00 0.00 3.18
4182 9426 0.517316 CCCAAGAGCAGCAACGTTAC 59.483 55.000 0.00 0.00 0.00 2.50
4183 9427 0.517316 CCAAGAGCAGCAACGTTACC 59.483 55.000 0.00 0.00 0.00 2.85
4184 9428 1.512926 CAAGAGCAGCAACGTTACCT 58.487 50.000 0.00 0.00 0.00 3.08
4185 9429 1.461127 CAAGAGCAGCAACGTTACCTC 59.539 52.381 0.00 4.63 0.00 3.85
4186 9430 0.969894 AGAGCAGCAACGTTACCTCT 59.030 50.000 0.00 6.90 0.00 3.69
4187 9431 1.067495 AGAGCAGCAACGTTACCTCTC 60.067 52.381 0.00 5.05 0.00 3.20
4188 9432 0.037232 AGCAGCAACGTTACCTCTCC 60.037 55.000 0.00 0.00 0.00 3.71
4189 9433 1.352156 GCAGCAACGTTACCTCTCCG 61.352 60.000 0.00 0.00 0.00 4.63
4190 9434 1.080025 AGCAACGTTACCTCTCCGC 60.080 57.895 0.00 0.00 0.00 5.54
4191 9435 1.080025 GCAACGTTACCTCTCCGCT 60.080 57.895 0.00 0.00 0.00 5.52
4192 9436 1.077089 GCAACGTTACCTCTCCGCTC 61.077 60.000 0.00 0.00 0.00 5.03
4193 9437 0.242825 CAACGTTACCTCTCCGCTCA 59.757 55.000 0.00 0.00 0.00 4.26
4194 9438 0.963962 AACGTTACCTCTCCGCTCAA 59.036 50.000 0.00 0.00 0.00 3.02
4195 9439 0.963962 ACGTTACCTCTCCGCTCAAA 59.036 50.000 0.00 0.00 0.00 2.69
4196 9440 1.342174 ACGTTACCTCTCCGCTCAAAA 59.658 47.619 0.00 0.00 0.00 2.44
4197 9441 2.224113 ACGTTACCTCTCCGCTCAAAAA 60.224 45.455 0.00 0.00 0.00 1.94
4217 9461 6.397831 AAAAACAAAAAGCAACGTTACCTC 57.602 33.333 0.00 0.00 0.00 3.85
4218 9462 4.976224 AACAAAAAGCAACGTTACCTCT 57.024 36.364 0.00 0.00 0.00 3.69
4219 9463 4.287238 ACAAAAAGCAACGTTACCTCTG 57.713 40.909 0.00 2.57 0.00 3.35
4220 9464 3.042887 CAAAAAGCAACGTTACCTCTGC 58.957 45.455 0.00 0.00 34.96 4.26
4221 9465 1.235724 AAAGCAACGTTACCTCTGCC 58.764 50.000 0.00 0.00 35.33 4.85
4222 9466 0.605589 AAGCAACGTTACCTCTGCCC 60.606 55.000 0.00 0.00 35.33 5.36
4223 9467 1.003718 GCAACGTTACCTCTGCCCT 60.004 57.895 0.00 0.00 0.00 5.19
4224 9468 1.019805 GCAACGTTACCTCTGCCCTC 61.020 60.000 0.00 0.00 0.00 4.30
4225 9469 0.320374 CAACGTTACCTCTGCCCTCA 59.680 55.000 0.00 0.00 0.00 3.86
4226 9470 0.320697 AACGTTACCTCTGCCCTCAC 59.679 55.000 0.00 0.00 0.00 3.51
4227 9471 1.153823 CGTTACCTCTGCCCTCACG 60.154 63.158 0.00 0.00 0.00 4.35
4228 9472 1.448013 GTTACCTCTGCCCTCACGC 60.448 63.158 0.00 0.00 0.00 5.34
4229 9473 1.911269 TTACCTCTGCCCTCACGCA 60.911 57.895 0.00 0.00 37.19 5.24
4230 9474 2.167398 TTACCTCTGCCCTCACGCAC 62.167 60.000 0.00 0.00 34.35 5.34
4232 9476 4.056125 CTCTGCCCTCACGCACGA 62.056 66.667 0.00 0.00 34.35 4.35
4233 9477 4.357947 TCTGCCCTCACGCACGAC 62.358 66.667 0.00 0.00 34.35 4.34
4234 9478 4.363990 CTGCCCTCACGCACGACT 62.364 66.667 0.00 0.00 34.35 4.18
4235 9479 4.662961 TGCCCTCACGCACGACTG 62.663 66.667 0.00 0.00 32.62 3.51
4237 9481 4.662961 CCCTCACGCACGACTGCA 62.663 66.667 0.00 0.00 44.50 4.41
4238 9482 3.406361 CCTCACGCACGACTGCAC 61.406 66.667 0.00 0.00 44.50 4.57
4239 9483 3.756677 CTCACGCACGACTGCACG 61.757 66.667 0.00 0.00 44.50 5.34
4240 9484 4.258932 TCACGCACGACTGCACGA 62.259 61.111 3.48 0.00 44.50 4.35
4241 9485 3.756677 CACGCACGACTGCACGAG 61.757 66.667 3.48 0.00 44.50 4.18
4242 9486 3.961197 ACGCACGACTGCACGAGA 61.961 61.111 3.48 0.00 44.50 4.04
4243 9487 3.168604 CGCACGACTGCACGAGAG 61.169 66.667 3.48 0.00 44.50 3.20
4244 9488 2.255554 GCACGACTGCACGAGAGA 59.744 61.111 3.48 0.00 43.62 3.10
4245 9489 1.153939 GCACGACTGCACGAGAGAT 60.154 57.895 3.48 0.00 43.62 2.75
4246 9490 1.409227 GCACGACTGCACGAGAGATG 61.409 60.000 3.48 0.00 43.62 2.90
4247 9491 1.153939 ACGACTGCACGAGAGATGC 60.154 57.895 3.48 0.00 43.68 3.91
4248 9492 1.138459 CGACTGCACGAGAGATGCT 59.862 57.895 0.00 0.00 43.77 3.79
4249 9493 0.865218 CGACTGCACGAGAGATGCTC 60.865 60.000 0.00 0.00 43.77 4.26
4269 9513 0.312102 GGCAGCTCAACTCAAACCAC 59.688 55.000 0.00 0.00 0.00 4.16
4270 9514 0.312102 GCAGCTCAACTCAAACCACC 59.688 55.000 0.00 0.00 0.00 4.61
4272 9516 0.178990 AGCTCAACTCAAACCACCCC 60.179 55.000 0.00 0.00 0.00 4.95
4273 9517 0.178990 GCTCAACTCAAACCACCCCT 60.179 55.000 0.00 0.00 0.00 4.79
4277 9521 4.211920 CTCAACTCAAACCACCCCTAAAA 58.788 43.478 0.00 0.00 0.00 1.52
4296 9540 2.645838 AAAAAGCTCAGCTCAGTCCA 57.354 45.000 0.00 0.00 38.25 4.02
4297 9541 2.645838 AAAAGCTCAGCTCAGTCCAA 57.354 45.000 0.00 0.00 38.25 3.53
4298 9542 2.645838 AAAGCTCAGCTCAGTCCAAA 57.354 45.000 0.00 0.00 38.25 3.28
4299 9543 2.875094 AAGCTCAGCTCAGTCCAAAT 57.125 45.000 0.00 0.00 38.25 2.32
4300 9544 2.110901 AGCTCAGCTCAGTCCAAATG 57.889 50.000 0.00 0.00 30.62 2.32
4302 9546 1.093159 CTCAGCTCAGTCCAAATGCC 58.907 55.000 0.00 0.00 0.00 4.40
4303 9547 0.322816 TCAGCTCAGTCCAAATGCCC 60.323 55.000 0.00 0.00 0.00 5.36
4304 9548 1.000396 AGCTCAGTCCAAATGCCCC 60.000 57.895 0.00 0.00 0.00 5.80
4305 9549 1.000396 GCTCAGTCCAAATGCCCCT 60.000 57.895 0.00 0.00 0.00 4.79
4306 9550 0.613012 GCTCAGTCCAAATGCCCCTT 60.613 55.000 0.00 0.00 0.00 3.95
4307 9551 1.180029 CTCAGTCCAAATGCCCCTTG 58.820 55.000 0.00 0.00 0.00 3.61
4308 9552 0.776810 TCAGTCCAAATGCCCCTTGA 59.223 50.000 0.00 0.00 0.00 3.02
4309 9553 1.146774 TCAGTCCAAATGCCCCTTGAA 59.853 47.619 0.00 0.00 0.00 2.69
4310 9554 1.969923 CAGTCCAAATGCCCCTTGAAA 59.030 47.619 0.00 0.00 0.00 2.69
4311 9555 2.368221 CAGTCCAAATGCCCCTTGAAAA 59.632 45.455 0.00 0.00 0.00 2.29
4312 9556 3.044894 AGTCCAAATGCCCCTTGAAAAA 58.955 40.909 0.00 0.00 0.00 1.94
4334 9578 8.437360 AAAAAGAAACTCATTCCAAATTCACC 57.563 30.769 0.00 0.00 38.94 4.02
4340 9584 8.831715 AAACTCATTCCAAATTCACCAAATAC 57.168 30.769 0.00 0.00 0.00 1.89
4342 9586 7.378181 ACTCATTCCAAATTCACCAAATACAC 58.622 34.615 0.00 0.00 0.00 2.90
4346 9590 4.585162 TCCAAATTCACCAAATACACCGTT 59.415 37.500 0.00 0.00 0.00 4.44
4349 9593 5.975693 AATTCACCAAATACACCGTTGAT 57.024 34.783 0.00 0.00 0.00 2.57
4350 9594 5.975693 ATTCACCAAATACACCGTTGATT 57.024 34.783 0.00 0.00 0.00 2.57
4351 9595 5.776173 TTCACCAAATACACCGTTGATTT 57.224 34.783 0.00 0.00 0.00 2.17
4354 9598 7.273320 TCACCAAATACACCGTTGATTTAAA 57.727 32.000 0.00 0.00 0.00 1.52
4355 9599 7.713750 TCACCAAATACACCGTTGATTTAAAA 58.286 30.769 0.00 0.00 0.00 1.52
4356 9600 8.195436 TCACCAAATACACCGTTGATTTAAAAA 58.805 29.630 0.00 0.00 0.00 1.94
4357 9601 8.270111 CACCAAATACACCGTTGATTTAAAAAC 58.730 33.333 0.00 0.00 0.00 2.43
4359 9603 8.818057 CCAAATACACCGTTGATTTAAAAACAA 58.182 29.630 0.00 0.00 0.00 2.83
4363 9607 7.653767 ACACCGTTGATTTAAAAACAACAAA 57.346 28.000 26.04 4.25 42.37 2.83
4365 9609 8.171840 ACACCGTTGATTTAAAAACAACAAATG 58.828 29.630 26.04 22.74 42.37 2.32
4367 9611 8.936864 ACCGTTGATTTAAAAACAACAAATGAA 58.063 25.926 26.04 0.00 42.37 2.57
4368 9612 9.419737 CCGTTGATTTAAAAACAACAAATGAAG 57.580 29.630 26.04 15.54 42.37 3.02
4378 9622 9.883142 AAAAACAACAAATGAAGTATCTTTGGA 57.117 25.926 0.00 0.00 34.86 3.53
4381 9625 9.480053 AACAACAAATGAAGTATCTTTGGATTG 57.520 29.630 0.00 0.00 34.86 2.67
4382 9626 8.859090 ACAACAAATGAAGTATCTTTGGATTGA 58.141 29.630 0.00 0.00 34.86 2.57
4383 9627 9.865321 CAACAAATGAAGTATCTTTGGATTGAT 57.135 29.630 0.00 0.00 34.86 2.57
4458 9702 8.779354 ATAGCTCTTTGTAATTTTCTTCGTCT 57.221 30.769 0.00 0.00 0.00 4.18
4459 9703 7.497925 AGCTCTTTGTAATTTTCTTCGTCTT 57.502 32.000 0.00 0.00 0.00 3.01
4460 9704 7.931275 AGCTCTTTGTAATTTTCTTCGTCTTT 58.069 30.769 0.00 0.00 0.00 2.52
4461 9705 8.406297 AGCTCTTTGTAATTTTCTTCGTCTTTT 58.594 29.630 0.00 0.00 0.00 2.27
4462 9706 8.472236 GCTCTTTGTAATTTTCTTCGTCTTTTG 58.528 33.333 0.00 0.00 0.00 2.44
4463 9707 9.716507 CTCTTTGTAATTTTCTTCGTCTTTTGA 57.283 29.630 0.00 0.00 0.00 2.69
4464 9708 9.716507 TCTTTGTAATTTTCTTCGTCTTTTGAG 57.283 29.630 0.00 0.00 0.00 3.02
4465 9709 9.716507 CTTTGTAATTTTCTTCGTCTTTTGAGA 57.283 29.630 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
375 376 4.124851 ACGCATCGATTCTTACCTTTCT 57.875 40.909 0.00 0.00 0.00 2.52
581 582 4.502016 CTTCCATCATCATATCCTCACGG 58.498 47.826 0.00 0.00 0.00 4.94
713 714 7.630242 TCTTTTTACATGAAGGTGATGATCC 57.370 36.000 0.00 0.00 0.00 3.36
779 1112 6.027749 CGCGGTGAAAAAGCTTTTAGAATAT 58.972 36.000 24.11 8.04 0.00 1.28
783 1116 2.031508 CCGCGGTGAAAAAGCTTTTAGA 60.032 45.455 24.11 11.29 0.00 2.10
784 1117 2.315901 CCGCGGTGAAAAAGCTTTTAG 58.684 47.619 24.11 13.87 0.00 1.85
785 1118 1.600912 GCCGCGGTGAAAAAGCTTTTA 60.601 47.619 28.70 7.58 0.00 1.52
787 1120 1.299850 GCCGCGGTGAAAAAGCTTT 60.300 52.632 28.70 5.69 0.00 3.51
788 1121 2.335011 GCCGCGGTGAAAAAGCTT 59.665 55.556 28.70 0.00 0.00 3.74
789 1122 3.670377 GGCCGCGGTGAAAAAGCT 61.670 61.111 28.70 0.00 0.00 3.74
790 1123 3.492311 TTGGCCGCGGTGAAAAAGC 62.492 57.895 28.70 9.28 0.00 3.51
792 1125 2.413765 GTTGGCCGCGGTGAAAAA 59.586 55.556 28.70 11.29 0.00 1.94
794 1127 4.877619 TGGTTGGCCGCGGTGAAA 62.878 61.111 28.70 15.82 37.67 2.69
801 1134 4.347453 CACAAGCTGGTTGGCCGC 62.347 66.667 21.99 0.00 40.90 6.53
802 1135 4.347453 GCACAAGCTGGTTGGCCG 62.347 66.667 21.99 11.81 40.90 6.13
819 1152 0.742505 CAACCAGCTATGCCACATGG 59.257 55.000 0.00 0.00 37.07 3.66
822 1155 1.678635 GCCAACCAGCTATGCCACA 60.679 57.895 0.00 0.00 0.00 4.17
841 1174 0.108520 TTAAGCTACGCACGAAGGGG 60.109 55.000 0.00 0.00 33.80 4.79
842 1175 1.593006 CATTAAGCTACGCACGAAGGG 59.407 52.381 0.00 0.00 0.00 3.95
876 1209 3.243704 CCCCACATCTTTTTCTTTTGCGA 60.244 43.478 0.00 0.00 0.00 5.10
878 1211 3.070878 TCCCCCACATCTTTTTCTTTTGC 59.929 43.478 0.00 0.00 0.00 3.68
879 1212 4.344968 AGTCCCCCACATCTTTTTCTTTTG 59.655 41.667 0.00 0.00 0.00 2.44
886 1220 2.024941 GGATCAGTCCCCCACATCTTTT 60.025 50.000 0.00 0.00 38.69 2.27
889 1223 1.050988 CGGATCAGTCCCCCACATCT 61.051 60.000 0.00 0.00 41.83 2.90
896 1230 4.222847 GCCGTCGGATCAGTCCCC 62.223 72.222 17.49 0.00 41.83 4.81
934 1268 4.124351 GTCGGTCGCATCCCGTGA 62.124 66.667 5.71 0.00 45.63 4.35
1096 1585 2.742116 TATGGGGAGTGGAAGCGGC 61.742 63.158 0.00 0.00 0.00 6.53
1099 1588 0.107165 GGTGTATGGGGAGTGGAAGC 60.107 60.000 0.00 0.00 0.00 3.86
1100 1589 1.486726 GAGGTGTATGGGGAGTGGAAG 59.513 57.143 0.00 0.00 0.00 3.46
1101 1590 1.580059 GAGGTGTATGGGGAGTGGAA 58.420 55.000 0.00 0.00 0.00 3.53
1102 1591 0.326238 GGAGGTGTATGGGGAGTGGA 60.326 60.000 0.00 0.00 0.00 4.02
1105 1594 0.031010 GAGGGAGGTGTATGGGGAGT 60.031 60.000 0.00 0.00 0.00 3.85
1107 1596 1.075525 CGAGGGAGGTGTATGGGGA 60.076 63.158 0.00 0.00 0.00 4.81
1110 1605 2.032860 CTGGCGAGGGAGGTGTATGG 62.033 65.000 0.00 0.00 0.00 2.74
1270 2152 1.409227 CGCTGACGCAGATGACAGAC 61.409 60.000 10.46 0.00 32.44 3.51
1283 2165 2.970974 GAAACCTGCAGCCGCTGAC 61.971 63.158 24.80 15.11 39.30 3.51
1301 2183 0.247736 ACTAGAAAGGCTGGAGCACG 59.752 55.000 0.00 0.00 44.36 5.34
1331 2213 7.433131 CCAACAATTGCATATACAGTTCATCAC 59.567 37.037 5.05 0.00 0.00 3.06
1412 2294 2.510238 GAGGATCTGCGCGCTTGT 60.510 61.111 33.29 17.45 0.00 3.16
1431 2454 4.560108 GCAGATGCTTTGGTGACTCAAATT 60.560 41.667 0.00 0.00 36.24 1.82
1482 2505 4.836125 CAGTTTACACTGGCATTTGACT 57.164 40.909 0.78 0.00 46.10 3.41
1513 2536 4.650972 TGGCTTCCAGGTAAACTTATGT 57.349 40.909 0.00 0.00 0.00 2.29
1667 2751 3.051392 GAACCGATTTGGCTGGCCG 62.051 63.158 7.14 0.00 43.94 6.13
1701 2841 1.002868 CTGCACCCCACCTTCAGAG 60.003 63.158 0.00 0.00 0.00 3.35
1780 3503 5.591067 TGAAACTTGTGGTTACCTGTTTAGG 59.409 40.000 2.07 0.00 42.78 2.69
1949 3770 7.753659 TCGACACAAACAATGAAAGTTTTAGA 58.246 30.769 0.00 0.00 37.10 2.10
2058 3890 8.129161 TGTTTGAGTTACATTTTGATGCAAAG 57.871 30.769 0.00 0.00 34.72 2.77
2095 3928 6.320672 CCCAGTCTCGTAGGTAAGATTTCTAA 59.679 42.308 0.00 0.00 0.00 2.10
2130 3963 2.677875 CAGCCTTGCAAGACCCCC 60.678 66.667 28.05 9.96 0.00 5.40
2131 3964 2.116125 ACAGCCTTGCAAGACCCC 59.884 61.111 28.05 12.32 0.00 4.95
2132 3965 1.109323 AACACAGCCTTGCAAGACCC 61.109 55.000 28.05 14.73 0.00 4.46
2133 3966 0.746659 AAACACAGCCTTGCAAGACC 59.253 50.000 28.05 17.17 0.00 3.85
2134 3967 1.678101 AGAAACACAGCCTTGCAAGAC 59.322 47.619 28.05 17.07 0.00 3.01
2244 4082 7.397221 TCTCCATGACATCAACTAACTGAATT 58.603 34.615 0.00 0.00 0.00 2.17
2548 7556 4.356405 TGACAAAGAGCAGAATGGAGAA 57.644 40.909 0.00 0.00 35.86 2.87
2767 7976 1.296392 CTCCATCACCCTGCAACGA 59.704 57.895 0.00 0.00 0.00 3.85
2919 8130 1.538512 CAGCACTGAAACATGAGGTGG 59.461 52.381 0.00 0.00 0.00 4.61
3091 8302 3.055458 AGCCTAAACTTCTCAGCTTCTCC 60.055 47.826 0.00 0.00 0.00 3.71
3127 8338 0.533032 AAGCGTTAGCCTCTCCTGTC 59.467 55.000 0.00 0.00 46.67 3.51
3152 8363 1.401539 GCGTTTTGTGGATCAAGGAGC 60.402 52.381 0.00 0.00 37.35 4.70
3168 8379 3.610040 TCACAAGTATCCATCAGCGTT 57.390 42.857 0.00 0.00 0.00 4.84
3308 8519 1.300931 GGAGCAGTTCACAGTCGCA 60.301 57.895 0.00 0.00 0.00 5.10
3334 8545 6.938507 ACTTGCCACATGTTTGATAATTCAT 58.061 32.000 0.00 0.00 0.00 2.57
3392 8622 5.342525 CACACGTGAGACACTGAAATAGTAC 59.657 44.000 25.01 0.00 37.60 2.73
3434 8666 5.343249 AGTTCATTTCTGTGAGCAACAAAC 58.657 37.500 0.00 0.00 38.67 2.93
3469 8701 1.203052 CAATGAAGGCACGGCTCAAAT 59.797 47.619 0.00 0.00 0.00 2.32
3562 8806 1.336755 GGTTGGCGGCAATTATAGTGG 59.663 52.381 28.07 0.00 0.00 4.00
3587 8831 2.304092 CCCTTAATAAAACCGAGGCCC 58.696 52.381 0.00 0.00 0.00 5.80
3594 8838 5.434408 ACTCGTGATCCCCTTAATAAAACC 58.566 41.667 0.00 0.00 0.00 3.27
3641 8885 6.959639 AGCATAATGTGTATGGGGTAAAAG 57.040 37.500 0.00 0.00 0.00 2.27
3646 8890 6.260700 TCTAAAGCATAATGTGTATGGGGT 57.739 37.500 0.00 0.00 0.00 4.95
3738 8982 9.179909 TGCGGGAAAGAATAGAACATTAATTTA 57.820 29.630 0.00 0.00 0.00 1.40
3766 9010 8.680001 ACAGAAAACTACCACTTTACGATTTTT 58.320 29.630 0.00 0.00 0.00 1.94
3767 9011 8.217131 ACAGAAAACTACCACTTTACGATTTT 57.783 30.769 0.00 0.00 0.00 1.82
3768 9012 7.496591 TGACAGAAAACTACCACTTTACGATTT 59.503 33.333 0.00 0.00 0.00 2.17
3769 9013 6.987992 TGACAGAAAACTACCACTTTACGATT 59.012 34.615 0.00 0.00 0.00 3.34
3770 9014 6.423001 GTGACAGAAAACTACCACTTTACGAT 59.577 38.462 0.00 0.00 0.00 3.73
3771 9015 5.750067 GTGACAGAAAACTACCACTTTACGA 59.250 40.000 0.00 0.00 0.00 3.43
3772 9016 5.332055 CGTGACAGAAAACTACCACTTTACG 60.332 44.000 0.00 0.00 0.00 3.18
3773 9017 5.521372 ACGTGACAGAAAACTACCACTTTAC 59.479 40.000 0.00 0.00 0.00 2.01
3774 9018 5.663456 ACGTGACAGAAAACTACCACTTTA 58.337 37.500 0.00 0.00 0.00 1.85
3775 9019 4.510571 ACGTGACAGAAAACTACCACTTT 58.489 39.130 0.00 0.00 0.00 2.66
3776 9020 4.133013 ACGTGACAGAAAACTACCACTT 57.867 40.909 0.00 0.00 0.00 3.16
3777 9021 3.814005 ACGTGACAGAAAACTACCACT 57.186 42.857 0.00 0.00 0.00 4.00
3778 9022 4.260497 GGAAACGTGACAGAAAACTACCAC 60.260 45.833 0.00 0.00 0.00 4.16
3779 9023 3.872771 GGAAACGTGACAGAAAACTACCA 59.127 43.478 0.00 0.00 0.00 3.25
3780 9024 4.463515 GGAAACGTGACAGAAAACTACC 57.536 45.455 0.00 0.00 0.00 3.18
3796 9040 7.471657 AAAAATTACCACATTTCACGGAAAC 57.528 32.000 1.85 0.00 34.23 2.78
3818 9062 9.321562 GGATGAGTGGTCGAGTATTTAATAAAA 57.678 33.333 0.00 0.00 0.00 1.52
3819 9063 8.701895 AGGATGAGTGGTCGAGTATTTAATAAA 58.298 33.333 0.00 0.00 0.00 1.40
3820 9064 8.246430 AGGATGAGTGGTCGAGTATTTAATAA 57.754 34.615 0.00 0.00 0.00 1.40
3821 9065 7.834881 AGGATGAGTGGTCGAGTATTTAATA 57.165 36.000 0.00 0.00 0.00 0.98
3822 9066 6.732896 AGGATGAGTGGTCGAGTATTTAAT 57.267 37.500 0.00 0.00 0.00 1.40
3823 9067 7.649533 TTAGGATGAGTGGTCGAGTATTTAA 57.350 36.000 0.00 0.00 0.00 1.52
3824 9068 6.238953 GCTTAGGATGAGTGGTCGAGTATTTA 60.239 42.308 0.00 0.00 0.00 1.40
3825 9069 5.452077 GCTTAGGATGAGTGGTCGAGTATTT 60.452 44.000 0.00 0.00 0.00 1.40
3826 9070 4.038162 GCTTAGGATGAGTGGTCGAGTATT 59.962 45.833 0.00 0.00 0.00 1.89
3827 9071 3.570550 GCTTAGGATGAGTGGTCGAGTAT 59.429 47.826 0.00 0.00 0.00 2.12
3828 9072 2.950309 GCTTAGGATGAGTGGTCGAGTA 59.050 50.000 0.00 0.00 0.00 2.59
3829 9073 1.751924 GCTTAGGATGAGTGGTCGAGT 59.248 52.381 0.00 0.00 0.00 4.18
3830 9074 1.751351 TGCTTAGGATGAGTGGTCGAG 59.249 52.381 0.00 0.00 0.00 4.04
3831 9075 1.476891 GTGCTTAGGATGAGTGGTCGA 59.523 52.381 0.00 0.00 0.00 4.20
3832 9076 1.799181 CGTGCTTAGGATGAGTGGTCG 60.799 57.143 0.00 0.00 0.00 4.79
3833 9077 1.204941 ACGTGCTTAGGATGAGTGGTC 59.795 52.381 0.00 0.00 0.00 4.02
3834 9078 1.267121 ACGTGCTTAGGATGAGTGGT 58.733 50.000 0.00 0.00 0.00 4.16
3835 9079 2.427453 AGTACGTGCTTAGGATGAGTGG 59.573 50.000 0.00 0.00 0.00 4.00
3836 9080 3.119459 ACAGTACGTGCTTAGGATGAGTG 60.119 47.826 2.37 0.30 0.00 3.51
3837 9081 3.090037 ACAGTACGTGCTTAGGATGAGT 58.910 45.455 2.37 0.00 0.00 3.41
3838 9082 3.784701 ACAGTACGTGCTTAGGATGAG 57.215 47.619 2.37 0.00 0.00 2.90
3839 9083 4.643334 ACATACAGTACGTGCTTAGGATGA 59.357 41.667 18.88 0.00 0.00 2.92
3840 9084 4.933330 ACATACAGTACGTGCTTAGGATG 58.067 43.478 12.70 12.70 0.00 3.51
3841 9085 6.069684 GTACATACAGTACGTGCTTAGGAT 57.930 41.667 2.37 0.00 43.27 3.24
3842 9086 5.490139 GTACATACAGTACGTGCTTAGGA 57.510 43.478 2.37 0.00 43.27 2.94
3853 9097 1.269361 CGGCGCCATGTACATACAGTA 60.269 52.381 28.98 0.00 39.92 2.74
3854 9098 0.529773 CGGCGCCATGTACATACAGT 60.530 55.000 28.98 0.00 39.92 3.55
3855 9099 1.831389 GCGGCGCCATGTACATACAG 61.831 60.000 28.98 6.18 39.92 2.74
3856 9100 1.885388 GCGGCGCCATGTACATACA 60.885 57.895 28.98 0.00 40.98 2.29
3857 9101 2.935955 GCGGCGCCATGTACATAC 59.064 61.111 28.98 2.99 0.00 2.39
3873 9117 2.791868 AAAACCCACAACGGCTGGC 61.792 57.895 0.00 0.00 0.00 4.85
3874 9118 1.067250 CAAAACCCACAACGGCTGG 59.933 57.895 0.00 0.00 0.00 4.85
3875 9119 1.591327 GCAAAACCCACAACGGCTG 60.591 57.895 0.00 0.00 0.00 4.85
3876 9120 1.756561 AGCAAAACCCACAACGGCT 60.757 52.632 0.00 0.00 0.00 5.52
3877 9121 1.591327 CAGCAAAACCCACAACGGC 60.591 57.895 0.00 0.00 0.00 5.68
3878 9122 0.248866 GTCAGCAAAACCCACAACGG 60.249 55.000 0.00 0.00 0.00 4.44
3879 9123 0.248866 GGTCAGCAAAACCCACAACG 60.249 55.000 0.00 0.00 0.00 4.10
3880 9124 1.111277 AGGTCAGCAAAACCCACAAC 58.889 50.000 0.00 0.00 37.52 3.32
3881 9125 1.110442 CAGGTCAGCAAAACCCACAA 58.890 50.000 0.00 0.00 37.52 3.33
3882 9126 1.391157 GCAGGTCAGCAAAACCCACA 61.391 55.000 0.00 0.00 37.52 4.17
3883 9127 1.109323 AGCAGGTCAGCAAAACCCAC 61.109 55.000 0.00 0.00 37.52 4.61
3884 9128 1.108727 CAGCAGGTCAGCAAAACCCA 61.109 55.000 0.00 0.00 37.52 4.51
3885 9129 0.823356 TCAGCAGGTCAGCAAAACCC 60.823 55.000 0.00 0.00 37.52 4.11
3886 9130 0.312102 GTCAGCAGGTCAGCAAAACC 59.688 55.000 0.00 0.00 36.85 3.27
3887 9131 0.040958 CGTCAGCAGGTCAGCAAAAC 60.041 55.000 0.00 0.00 36.85 2.43
3888 9132 1.165907 CCGTCAGCAGGTCAGCAAAA 61.166 55.000 0.00 0.00 36.85 2.44
3889 9133 1.597854 CCGTCAGCAGGTCAGCAAA 60.598 57.895 0.00 0.00 36.85 3.68
3890 9134 2.031012 CCGTCAGCAGGTCAGCAA 59.969 61.111 0.00 0.00 36.85 3.91
3891 9135 2.917227 TCCGTCAGCAGGTCAGCA 60.917 61.111 0.00 0.00 36.85 4.41
3892 9136 2.125753 CTCCGTCAGCAGGTCAGC 60.126 66.667 0.00 0.00 0.00 4.26
3893 9137 2.575993 CCTCCGTCAGCAGGTCAG 59.424 66.667 0.00 0.00 0.00 3.51
3894 9138 3.695606 GCCTCCGTCAGCAGGTCA 61.696 66.667 0.00 0.00 31.65 4.02
3895 9139 4.803426 CGCCTCCGTCAGCAGGTC 62.803 72.222 0.00 0.00 31.65 3.85
3901 9145 4.803426 GTCCAGCGCCTCCGTCAG 62.803 72.222 2.29 0.00 36.67 3.51
3906 9150 3.492311 GATCTCGTCCAGCGCCTCC 62.492 68.421 2.29 0.00 41.07 4.30
3907 9151 2.026879 GATCTCGTCCAGCGCCTC 59.973 66.667 2.29 0.00 41.07 4.70
3908 9152 3.893763 CGATCTCGTCCAGCGCCT 61.894 66.667 2.29 0.00 41.07 5.52
3938 9182 2.056906 AATAGTGGATCCGCCCCTGC 62.057 60.000 21.82 0.00 34.97 4.85
3939 9183 0.250467 CAATAGTGGATCCGCCCCTG 60.250 60.000 21.82 12.04 34.97 4.45
3940 9184 2.145865 CAATAGTGGATCCGCCCCT 58.854 57.895 21.82 9.67 34.97 4.79
3941 9185 4.800554 CAATAGTGGATCCGCCCC 57.199 61.111 21.82 2.04 34.97 5.80
3951 9195 4.081142 TCTGTACACCCATGACCAATAGTG 60.081 45.833 0.00 0.00 0.00 2.74
3952 9196 4.101114 TCTGTACACCCATGACCAATAGT 58.899 43.478 0.00 0.00 0.00 2.12
3953 9197 4.753516 TCTGTACACCCATGACCAATAG 57.246 45.455 0.00 0.00 0.00 1.73
3954 9198 4.473196 ACATCTGTACACCCATGACCAATA 59.527 41.667 10.37 0.00 0.00 1.90
3955 9199 3.266772 ACATCTGTACACCCATGACCAAT 59.733 43.478 10.37 0.00 0.00 3.16
3956 9200 2.642311 ACATCTGTACACCCATGACCAA 59.358 45.455 10.37 0.00 0.00 3.67
3957 9201 2.265367 ACATCTGTACACCCATGACCA 58.735 47.619 10.37 0.00 0.00 4.02
3969 9213 7.094549 GCAGTAAATTTTGGGTGTACATCTGTA 60.095 37.037 6.00 0.00 0.00 2.74
3970 9214 6.294508 GCAGTAAATTTTGGGTGTACATCTGT 60.295 38.462 6.00 0.00 0.00 3.41
3971 9215 6.092748 GCAGTAAATTTTGGGTGTACATCTG 58.907 40.000 6.00 0.00 0.00 2.90
3972 9216 5.772672 TGCAGTAAATTTTGGGTGTACATCT 59.227 36.000 6.00 0.00 0.00 2.90
3973 9217 6.019779 TGCAGTAAATTTTGGGTGTACATC 57.980 37.500 0.00 0.00 0.00 3.06
3974 9218 6.412362 TTGCAGTAAATTTTGGGTGTACAT 57.588 33.333 0.00 0.00 0.00 2.29
3975 9219 5.854010 TTGCAGTAAATTTTGGGTGTACA 57.146 34.783 0.00 0.00 0.00 2.90
3976 9220 7.541122 TTTTTGCAGTAAATTTTGGGTGTAC 57.459 32.000 0.00 0.00 0.00 2.90
4020 9264 8.934507 TTTTTGAAACAAAGTATTTCGGTCAT 57.065 26.923 0.00 0.00 35.03 3.06
4064 9308 8.610896 GCGTAATCTCTCAAAGTAGTACTCTTA 58.389 37.037 2.58 0.00 0.00 2.10
4065 9309 7.120873 TGCGTAATCTCTCAAAGTAGTACTCTT 59.879 37.037 2.58 0.00 0.00 2.85
4066 9310 6.598457 TGCGTAATCTCTCAAAGTAGTACTCT 59.402 38.462 2.58 0.00 0.00 3.24
4067 9311 6.783162 TGCGTAATCTCTCAAAGTAGTACTC 58.217 40.000 2.58 0.00 0.00 2.59
4068 9312 6.678409 GCTGCGTAATCTCTCAAAGTAGTACT 60.678 42.308 0.00 0.00 0.00 2.73
4069 9313 5.456173 GCTGCGTAATCTCTCAAAGTAGTAC 59.544 44.000 0.00 0.00 0.00 2.73
4070 9314 5.124936 TGCTGCGTAATCTCTCAAAGTAGTA 59.875 40.000 0.00 0.00 0.00 1.82
4071 9315 4.082190 TGCTGCGTAATCTCTCAAAGTAGT 60.082 41.667 0.00 0.00 0.00 2.73
4072 9316 4.424626 TGCTGCGTAATCTCTCAAAGTAG 58.575 43.478 0.00 0.00 0.00 2.57
4073 9317 4.424626 CTGCTGCGTAATCTCTCAAAGTA 58.575 43.478 0.00 0.00 0.00 2.24
4074 9318 3.257393 CTGCTGCGTAATCTCTCAAAGT 58.743 45.455 0.00 0.00 0.00 2.66
4075 9319 2.030213 GCTGCTGCGTAATCTCTCAAAG 59.970 50.000 0.00 0.00 0.00 2.77
4076 9320 2.002586 GCTGCTGCGTAATCTCTCAAA 58.997 47.619 0.00 0.00 0.00 2.69
4077 9321 1.205655 AGCTGCTGCGTAATCTCTCAA 59.794 47.619 10.14 0.00 45.42 3.02
4078 9322 0.820226 AGCTGCTGCGTAATCTCTCA 59.180 50.000 10.14 0.00 45.42 3.27
4079 9323 1.066908 AGAGCTGCTGCGTAATCTCTC 59.933 52.381 7.01 0.00 45.42 3.20
4080 9324 1.066908 GAGAGCTGCTGCGTAATCTCT 59.933 52.381 19.06 12.12 45.42 3.10
4081 9325 1.486439 GAGAGCTGCTGCGTAATCTC 58.514 55.000 7.01 14.03 45.42 2.75
4082 9326 0.103937 GGAGAGCTGCTGCGTAATCT 59.896 55.000 7.01 7.33 45.42 2.40
4083 9327 0.103937 AGGAGAGCTGCTGCGTAATC 59.896 55.000 7.01 6.84 45.42 1.75
4084 9328 0.179089 CAGGAGAGCTGCTGCGTAAT 60.179 55.000 7.01 0.00 41.92 1.89
4085 9329 1.216444 CAGGAGAGCTGCTGCGTAA 59.784 57.895 7.01 0.00 41.92 3.18
4086 9330 2.888111 CAGGAGAGCTGCTGCGTA 59.112 61.111 7.01 0.00 41.92 4.42
4095 9339 1.584380 CTGTTTGCCAGCAGGAGAGC 61.584 60.000 0.00 0.00 36.89 4.09
4096 9340 2.552802 CTGTTTGCCAGCAGGAGAG 58.447 57.895 0.00 0.00 36.89 3.20
4097 9341 4.806936 CTGTTTGCCAGCAGGAGA 57.193 55.556 0.00 0.00 36.89 3.71
4107 9351 1.405463 GGCTACTATTGGCCTGTTTGC 59.595 52.381 3.32 6.18 44.48 3.68
4108 9352 2.024414 GGGCTACTATTGGCCTGTTTG 58.976 52.381 3.32 0.00 46.80 2.93
4109 9353 2.437085 GGGCTACTATTGGCCTGTTT 57.563 50.000 3.32 0.00 46.80 2.83
4115 9359 3.233355 CCGATGGGCTACTATTGGC 57.767 57.895 0.00 0.00 32.99 4.52
4128 9372 3.807538 GTGCCACTGCTGCCGATG 61.808 66.667 0.00 0.00 38.71 3.84
4129 9373 4.334118 TGTGCCACTGCTGCCGAT 62.334 61.111 0.00 0.00 38.71 4.18
4130 9374 4.994471 CTGTGCCACTGCTGCCGA 62.994 66.667 0.00 0.00 38.71 5.54
4142 9386 2.335712 GCTGGTTAGTGGGCTGTGC 61.336 63.158 0.00 0.00 0.00 4.57
4143 9387 0.957395 CTGCTGGTTAGTGGGCTGTG 60.957 60.000 0.00 0.00 0.00 3.66
4144 9388 1.376466 CTGCTGGTTAGTGGGCTGT 59.624 57.895 0.00 0.00 0.00 4.40
4145 9389 2.042831 GCTGCTGGTTAGTGGGCTG 61.043 63.158 0.00 0.00 0.00 4.85
4146 9390 2.352805 GCTGCTGGTTAGTGGGCT 59.647 61.111 0.00 0.00 0.00 5.19
4147 9391 2.751837 GGCTGCTGGTTAGTGGGC 60.752 66.667 0.00 0.00 0.00 5.36
4148 9392 2.044946 GGGCTGCTGGTTAGTGGG 60.045 66.667 0.00 0.00 0.00 4.61
4149 9393 0.962356 CTTGGGCTGCTGGTTAGTGG 60.962 60.000 0.00 0.00 0.00 4.00
4150 9394 0.036732 TCTTGGGCTGCTGGTTAGTG 59.963 55.000 0.00 0.00 0.00 2.74
4151 9395 0.326264 CTCTTGGGCTGCTGGTTAGT 59.674 55.000 0.00 0.00 0.00 2.24
4152 9396 1.028868 GCTCTTGGGCTGCTGGTTAG 61.029 60.000 0.00 0.00 0.00 2.34
4153 9397 1.002134 GCTCTTGGGCTGCTGGTTA 60.002 57.895 0.00 0.00 0.00 2.85
4154 9398 2.282745 GCTCTTGGGCTGCTGGTT 60.283 61.111 0.00 0.00 0.00 3.67
4155 9399 3.564345 CTGCTCTTGGGCTGCTGGT 62.564 63.158 0.00 0.00 0.00 4.00
4156 9400 2.750637 CTGCTCTTGGGCTGCTGG 60.751 66.667 0.00 0.00 0.00 4.85
4160 9404 2.960170 GTTGCTGCTCTTGGGCTG 59.040 61.111 0.00 0.00 0.00 4.85
4161 9405 2.670934 CGTTGCTGCTCTTGGGCT 60.671 61.111 0.00 0.00 0.00 5.19
4162 9406 1.234615 TAACGTTGCTGCTCTTGGGC 61.235 55.000 11.99 0.00 0.00 5.36
4163 9407 0.517316 GTAACGTTGCTGCTCTTGGG 59.483 55.000 11.99 0.00 0.00 4.12
4164 9408 0.517316 GGTAACGTTGCTGCTCTTGG 59.483 55.000 16.07 0.00 0.00 3.61
4165 9409 1.461127 GAGGTAACGTTGCTGCTCTTG 59.539 52.381 16.07 0.00 46.39 3.02
4166 9410 1.344763 AGAGGTAACGTTGCTGCTCTT 59.655 47.619 16.07 3.42 46.39 2.85
4167 9411 0.969894 AGAGGTAACGTTGCTGCTCT 59.030 50.000 16.07 15.88 46.39 4.09
4168 9412 1.351153 GAGAGGTAACGTTGCTGCTC 58.649 55.000 16.07 16.88 46.39 4.26
4169 9413 0.037232 GGAGAGGTAACGTTGCTGCT 60.037 55.000 16.07 12.77 46.39 4.24
4170 9414 1.352156 CGGAGAGGTAACGTTGCTGC 61.352 60.000 16.07 8.38 46.39 5.25
4171 9415 1.352156 GCGGAGAGGTAACGTTGCTG 61.352 60.000 16.07 2.66 46.39 4.41
4172 9416 1.080025 GCGGAGAGGTAACGTTGCT 60.080 57.895 16.07 5.52 46.39 3.91
4173 9417 1.077089 GAGCGGAGAGGTAACGTTGC 61.077 60.000 11.99 9.89 46.39 4.17
4174 9418 0.242825 TGAGCGGAGAGGTAACGTTG 59.757 55.000 11.99 0.00 46.39 4.10
4175 9419 0.963962 TTGAGCGGAGAGGTAACGTT 59.036 50.000 5.88 5.88 46.39 3.99
4176 9420 0.963962 TTTGAGCGGAGAGGTAACGT 59.036 50.000 0.00 0.00 46.39 3.99
4177 9421 2.074547 TTTTGAGCGGAGAGGTAACG 57.925 50.000 0.00 0.00 46.39 3.18
4194 9438 6.090223 CAGAGGTAACGTTGCTTTTTGTTTTT 59.910 34.615 16.07 0.00 46.39 1.94
4195 9439 5.575218 CAGAGGTAACGTTGCTTTTTGTTTT 59.425 36.000 16.07 0.00 46.39 2.43
4196 9440 5.099575 CAGAGGTAACGTTGCTTTTTGTTT 58.900 37.500 16.07 0.00 46.39 2.83
4197 9441 4.668289 CAGAGGTAACGTTGCTTTTTGTT 58.332 39.130 16.07 0.00 46.39 2.83
4198 9442 3.488553 GCAGAGGTAACGTTGCTTTTTGT 60.489 43.478 16.07 0.00 44.20 2.83
4199 9443 3.042887 GCAGAGGTAACGTTGCTTTTTG 58.957 45.455 16.07 11.74 44.20 2.44
4200 9444 2.034179 GGCAGAGGTAACGTTGCTTTTT 59.966 45.455 16.07 0.00 45.99 1.94
4201 9445 1.607148 GGCAGAGGTAACGTTGCTTTT 59.393 47.619 16.07 0.70 45.99 2.27
4202 9446 1.235724 GGCAGAGGTAACGTTGCTTT 58.764 50.000 16.07 5.09 45.99 3.51
4203 9447 0.605589 GGGCAGAGGTAACGTTGCTT 60.606 55.000 16.07 8.67 45.99 3.91
4204 9448 1.003718 GGGCAGAGGTAACGTTGCT 60.004 57.895 16.07 2.37 45.99 3.91
4205 9449 1.003718 AGGGCAGAGGTAACGTTGC 60.004 57.895 11.99 9.89 46.00 4.17
4206 9450 0.320374 TGAGGGCAGAGGTAACGTTG 59.680 55.000 11.99 0.00 46.39 4.10
4207 9451 0.320697 GTGAGGGCAGAGGTAACGTT 59.679 55.000 5.88 5.88 46.39 3.99
4208 9452 1.874345 CGTGAGGGCAGAGGTAACGT 61.874 60.000 0.00 0.00 46.39 3.99
4209 9453 1.153823 CGTGAGGGCAGAGGTAACG 60.154 63.158 0.00 0.00 46.39 3.18
4210 9454 1.448013 GCGTGAGGGCAGAGGTAAC 60.448 63.158 0.00 0.00 0.00 2.50
4211 9455 1.911269 TGCGTGAGGGCAGAGGTAA 60.911 57.895 0.00 0.00 38.17 2.85
4212 9456 2.283604 TGCGTGAGGGCAGAGGTA 60.284 61.111 0.00 0.00 38.17 3.08
4213 9457 4.008933 GTGCGTGAGGGCAGAGGT 62.009 66.667 0.00 0.00 44.93 3.85
4215 9459 4.056125 TCGTGCGTGAGGGCAGAG 62.056 66.667 0.00 0.00 44.93 3.35
4216 9460 4.357947 GTCGTGCGTGAGGGCAGA 62.358 66.667 0.00 0.00 44.93 4.26
4217 9461 4.363990 AGTCGTGCGTGAGGGCAG 62.364 66.667 0.00 0.00 44.93 4.85
4218 9462 4.662961 CAGTCGTGCGTGAGGGCA 62.663 66.667 0.00 0.00 41.45 5.36
4228 9472 1.409227 GCATCTCTCGTGCAGTCGTG 61.409 60.000 0.00 0.00 42.08 4.35
4229 9473 1.153939 GCATCTCTCGTGCAGTCGT 60.154 57.895 0.00 0.00 42.08 4.34
4230 9474 0.865218 GAGCATCTCTCGTGCAGTCG 60.865 60.000 0.00 0.00 44.87 4.18
4231 9475 2.956469 GAGCATCTCTCGTGCAGTC 58.044 57.895 0.00 0.00 44.87 3.51
4246 9490 1.230635 TTTGAGTTGAGCTGCCGAGC 61.231 55.000 0.00 0.00 46.64 5.03
4247 9491 0.514691 GTTTGAGTTGAGCTGCCGAG 59.485 55.000 0.00 0.00 0.00 4.63
4248 9492 0.884704 GGTTTGAGTTGAGCTGCCGA 60.885 55.000 0.00 0.00 0.00 5.54
4249 9493 1.165907 TGGTTTGAGTTGAGCTGCCG 61.166 55.000 0.00 0.00 0.00 5.69
4250 9494 0.312102 GTGGTTTGAGTTGAGCTGCC 59.688 55.000 0.00 0.00 0.00 4.85
4251 9495 0.312102 GGTGGTTTGAGTTGAGCTGC 59.688 55.000 0.00 0.00 0.00 5.25
4252 9496 0.954452 GGGTGGTTTGAGTTGAGCTG 59.046 55.000 0.00 0.00 0.00 4.24
4255 9499 3.502123 TTAGGGGTGGTTTGAGTTGAG 57.498 47.619 0.00 0.00 0.00 3.02
4256 9500 3.955524 TTTAGGGGTGGTTTGAGTTGA 57.044 42.857 0.00 0.00 0.00 3.18
4277 9521 2.645838 TGGACTGAGCTGAGCTTTTT 57.354 45.000 9.00 0.00 39.88 1.94
4281 9525 1.949547 GCATTTGGACTGAGCTGAGCT 60.950 52.381 6.69 6.69 43.88 4.09
4282 9526 0.450983 GCATTTGGACTGAGCTGAGC 59.549 55.000 0.00 0.00 0.00 4.26
4283 9527 1.093159 GGCATTTGGACTGAGCTGAG 58.907 55.000 0.00 0.00 0.00 3.35
4284 9528 0.322816 GGGCATTTGGACTGAGCTGA 60.323 55.000 0.00 0.00 0.00 4.26
4285 9529 1.318158 GGGGCATTTGGACTGAGCTG 61.318 60.000 0.00 0.00 0.00 4.24
4286 9530 1.000396 GGGGCATTTGGACTGAGCT 60.000 57.895 0.00 0.00 0.00 4.09
4288 9532 1.180029 CAAGGGGCATTTGGACTGAG 58.820 55.000 0.00 0.00 0.00 3.35
4289 9533 0.776810 TCAAGGGGCATTTGGACTGA 59.223 50.000 1.19 0.00 0.00 3.41
4290 9534 1.631405 TTCAAGGGGCATTTGGACTG 58.369 50.000 1.19 0.00 0.00 3.51
4292 9536 3.483808 TTTTTCAAGGGGCATTTGGAC 57.516 42.857 1.19 0.00 0.00 4.02
4309 9553 8.046107 TGGTGAATTTGGAATGAGTTTCTTTTT 58.954 29.630 0.00 0.00 34.56 1.94
4310 9554 7.563906 TGGTGAATTTGGAATGAGTTTCTTTT 58.436 30.769 0.00 0.00 34.56 2.27
4311 9555 7.123355 TGGTGAATTTGGAATGAGTTTCTTT 57.877 32.000 0.00 0.00 34.56 2.52
4312 9556 6.729690 TGGTGAATTTGGAATGAGTTTCTT 57.270 33.333 0.00 0.00 34.56 2.52
4313 9557 6.729690 TTGGTGAATTTGGAATGAGTTTCT 57.270 33.333 0.00 0.00 34.56 2.52
4314 9558 7.967890 ATTTGGTGAATTTGGAATGAGTTTC 57.032 32.000 0.00 0.00 0.00 2.78
4315 9559 8.428063 TGTATTTGGTGAATTTGGAATGAGTTT 58.572 29.630 0.00 0.00 0.00 2.66
4316 9560 7.872483 GTGTATTTGGTGAATTTGGAATGAGTT 59.128 33.333 0.00 0.00 0.00 3.01
4317 9561 7.378181 GTGTATTTGGTGAATTTGGAATGAGT 58.622 34.615 0.00 0.00 0.00 3.41
4318 9562 6.813152 GGTGTATTTGGTGAATTTGGAATGAG 59.187 38.462 0.00 0.00 0.00 2.90
4319 9563 6.571344 CGGTGTATTTGGTGAATTTGGAATGA 60.571 38.462 0.00 0.00 0.00 2.57
4320 9564 5.576384 CGGTGTATTTGGTGAATTTGGAATG 59.424 40.000 0.00 0.00 0.00 2.67
4321 9565 5.245075 ACGGTGTATTTGGTGAATTTGGAAT 59.755 36.000 0.00 0.00 0.00 3.01
4322 9566 4.585162 ACGGTGTATTTGGTGAATTTGGAA 59.415 37.500 0.00 0.00 0.00 3.53
4323 9567 4.145807 ACGGTGTATTTGGTGAATTTGGA 58.854 39.130 0.00 0.00 0.00 3.53
4324 9568 4.513198 ACGGTGTATTTGGTGAATTTGG 57.487 40.909 0.00 0.00 0.00 3.28
4325 9569 5.524284 TCAACGGTGTATTTGGTGAATTTG 58.476 37.500 0.00 0.00 0.00 2.32
4326 9570 5.776173 TCAACGGTGTATTTGGTGAATTT 57.224 34.783 0.00 0.00 0.00 1.82
4327 9571 5.975693 ATCAACGGTGTATTTGGTGAATT 57.024 34.783 0.00 0.00 0.00 2.17
4328 9572 5.975693 AATCAACGGTGTATTTGGTGAAT 57.024 34.783 0.00 0.00 0.00 2.57
4329 9573 5.776173 AAATCAACGGTGTATTTGGTGAA 57.224 34.783 0.00 0.00 0.00 3.18
4330 9574 6.879276 TTAAATCAACGGTGTATTTGGTGA 57.121 33.333 16.28 0.00 0.00 4.02
4331 9575 7.932120 TTTTAAATCAACGGTGTATTTGGTG 57.068 32.000 16.28 0.00 0.00 4.17
4332 9576 7.980099 TGTTTTTAAATCAACGGTGTATTTGGT 59.020 29.630 16.28 0.00 0.00 3.67
4333 9577 8.354011 TGTTTTTAAATCAACGGTGTATTTGG 57.646 30.769 16.28 0.00 0.00 3.28
4334 9578 9.626332 GTTGTTTTTAAATCAACGGTGTATTTG 57.374 29.630 16.28 0.00 33.53 2.32
4340 9584 8.383619 TCATTTGTTGTTTTTAAATCAACGGTG 58.616 29.630 19.94 17.72 42.65 4.94
4342 9586 9.419737 CTTCATTTGTTGTTTTTAAATCAACGG 57.580 29.630 19.94 12.73 42.65 4.44
4355 9599 9.480053 CAATCCAAAGATACTTCATTTGTTGTT 57.520 29.630 0.00 0.00 33.13 2.83
4356 9600 8.859090 TCAATCCAAAGATACTTCATTTGTTGT 58.141 29.630 0.00 0.00 33.13 3.32
4357 9601 9.865321 ATCAATCCAAAGATACTTCATTTGTTG 57.135 29.630 0.00 0.00 33.13 3.33
4432 9676 9.871238 AGACGAAGAAAATTACAAAGAGCTATA 57.129 29.630 0.00 0.00 0.00 1.31
4433 9677 8.779354 AGACGAAGAAAATTACAAAGAGCTAT 57.221 30.769 0.00 0.00 0.00 2.97
4434 9678 8.603242 AAGACGAAGAAAATTACAAAGAGCTA 57.397 30.769 0.00 0.00 0.00 3.32
4435 9679 7.497925 AAGACGAAGAAAATTACAAAGAGCT 57.502 32.000 0.00 0.00 0.00 4.09
4436 9680 8.472236 CAAAAGACGAAGAAAATTACAAAGAGC 58.528 33.333 0.00 0.00 0.00 4.09
4437 9681 9.716507 TCAAAAGACGAAGAAAATTACAAAGAG 57.283 29.630 0.00 0.00 0.00 2.85
4438 9682 9.716507 CTCAAAAGACGAAGAAAATTACAAAGA 57.283 29.630 0.00 0.00 0.00 2.52
4439 9683 9.716507 TCTCAAAAGACGAAGAAAATTACAAAG 57.283 29.630 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.