AutoCloner

Multiple sequence alignment - TraesCS5A01G323700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G323700	chr5A	100.000	4455	0	0	1	4455	535498370	535502824	0.000000e+00	8227
1	TraesCS5A01G323700	chr5A	92.857	126	8	1	4329	4454	150807299	150807175	9.840000e-42	182
2	TraesCS5A01G323700	chr4A	98.758	4347	39	3	1	4332	358819676	358824022	0.000000e+00	7714
3	TraesCS5A01G323700	chr4A	97.322	4332	114	2	1	4331	662771082	662766752	0.000000e+00	7356
4	TraesCS5A01G323700	chr6A	97.215	4345	105	9	1	4342	585012168	585007837	0.000000e+00	7339
5	TraesCS5A01G323700	chr7B	97.144	4342	118	6	1	4339	558987214	558982876	0.000000e+00	7326
6	TraesCS5A01G323700	chr1B	96.824	3778	104	10	554	4326	667558663	667562429	0.000000e+00	6298
7	TraesCS5A01G323700	chr1B	96.886	3372	91	8	1	3371	403618279	403621637	0.000000e+00	5633
8	TraesCS5A01G323700	chr1B	96.072	942	34	3	3399	4340	403621633	403622571	0.000000e+00	1531
9	TraesCS5A01G323700	chr1B	90.299	134	9	3	4325	4454	603382608	603382741	5.920000e-39	172
10	TraesCS5A01G323700	chr3D	96.815	3203	88	12	1134	4331	556686521	556689714	0.000000e+00	5337
11	TraesCS5A01G323700	chr3D	93.388	121	7	1	4336	4455	374812998	374812878	1.270000e-40	178
12	TraesCS5A01G323700	chr2A	98.357	2982	48	1	1	2982	726553994	726551014	0.000000e+00	5234
13	TraesCS5A01G323700	chr2A	92.742	124	9	0	4331	4454	15132201	15132324	3.540000e-41	180
14	TraesCS5A01G323700	chr3B	97.612	2890	61	5	1444	4332	770750365	770747483	0.000000e+00	4948
15	TraesCS5A01G323700	chr3B	88.601	386	40	3	3299	3681	9085343	9085727	2.430000e-127	466
16	TraesCS5A01G323700	chr5D	94.454	1695	88	5	1	1690	4421280	4419587	0.000000e+00	2604
17	TraesCS5A01G323700	chr5D	94.454	1695	88	5	1	1690	4568308	4566615	0.000000e+00	2604
18	TraesCS5A01G323700	chr5D	94.395	1695	89	5	1	1690	4724791	4723098	0.000000e+00	2599
19	TraesCS5A01G323700	chr5B	96.677	933	27	4	3401	4331	703511754	703510824	0.000000e+00	1548
20	TraesCS5A01G323700	chr5B	91.473	129	9	2	4329	4455	540840008	540840136	4.580000e-40	176
21	TraesCS5A01G323700	chr3A	83.566	572	79	10	3187	3754	169034467	169033907	5.110000e-144	521
22	TraesCS5A01G323700	chr3A	93.023	129	7	2	4328	4455	617793613	617793486	2.120000e-43	187
23	TraesCS5A01G323700	chr3A	92.623	122	9	0	4331	4452	744948759	744948880	4.580000e-40	176
24	TraesCS5A01G323700	chr3A	92.562	121	9	0	4331	4451	745021686	745021806	1.650000e-39	174
25	TraesCS5A01G323700	chr6B	92.857	126	7	2	4329	4453	170169978	170169854	9.840000e-42	182

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G323700	chr5A	535498370	535502824	4454	False	8227	8227	100.000	1	4455	1	chr5A.!!$F1	4454
1	TraesCS5A01G323700	chr4A	358819676	358824022	4346	False	7714	7714	98.758	1	4332	1	chr4A.!!$F1	4331
2	TraesCS5A01G323700	chr4A	662766752	662771082	4330	True	7356	7356	97.322	1	4331	1	chr4A.!!$R1	4330
3	TraesCS5A01G323700	chr6A	585007837	585012168	4331	True	7339	7339	97.215	1	4342	1	chr6A.!!$R1	4341
4	TraesCS5A01G323700	chr7B	558982876	558987214	4338	True	7326	7326	97.144	1	4339	1	chr7B.!!$R1	4338
5	TraesCS5A01G323700	chr1B	667558663	667562429	3766	False	6298	6298	96.824	554	4326	1	chr1B.!!$F2	3772
6	TraesCS5A01G323700	chr1B	403618279	403622571	4292	False	3582	5633	96.479	1	4340	2	chr1B.!!$F3	4339
7	TraesCS5A01G323700	chr3D	556686521	556689714	3193	False	5337	5337	96.815	1134	4331	1	chr3D.!!$F1	3197
8	TraesCS5A01G323700	chr2A	726551014	726553994	2980	True	5234	5234	98.357	1	2982	1	chr2A.!!$R1	2981
9	TraesCS5A01G323700	chr3B	770747483	770750365	2882	True	4948	4948	97.612	1444	4332	1	chr3B.!!$R1	2888
10	TraesCS5A01G323700	chr5D	4419587	4421280	1693	True	2604	2604	94.454	1	1690	1	chr5D.!!$R1	1689
11	TraesCS5A01G323700	chr5D	4566615	4568308	1693	True	2604	2604	94.454	1	1690	1	chr5D.!!$R2	1689
12	TraesCS5A01G323700	chr5D	4723098	4724791	1693	True	2599	2599	94.395	1	1690	1	chr5D.!!$R3	1689
13	TraesCS5A01G323700	chr5B	703510824	703511754	930	True	1548	1548	96.677	3401	4331	1	chr5B.!!$R1	930
14	TraesCS5A01G323700	chr3A	169033907	169034467	560	True	521	521	83.566	3187	3754	1	chr3A.!!$R1	567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
207	211	0.466543	AGTGTTGGCGTACTTGACCA	59.533	50.000	0.00	4.02	F
422	426	1.792949	GGTCAGCGTGTTTCTGTACTG	59.207	52.381	33.48	2.74	F
1137	1143	4.012374	GGGAGAAGAAGAATGACAATGCA	58.988	43.478	0.00	3.96	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1566	1592	7.759433	GCTATAAGCAAAAATAACAAGCAAGGA	59.241	33.333	41.89	3.36	R
2954	2984	2.236146	TCCACAGATAATCGCACAAGGT	59.764	45.455	0.00	3.50	R
3471	3501	6.606796	ACCCAATACATTCTGATGCAACATTA	59.393	34.615	36.72	1.90	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
207	211	0.466543	AGTGTTGGCGTACTTGACCA	59.533	50.000	0.00	0.00	0.00	4.02
342	346	5.929058	TCAGAGATGTATGAAGCTTCTGT	57.071	39.130	26.09	17.06	0.00	3.41
422	426	1.792949	GGTCAGCGTGTTTCTGTACTG	59.207	52.381	0.00	0.00	33.48	2.74
671	675	6.641314	TCTTTGATCTCGAGTAGTTTGTTCAC	59.359	38.462	13.13	0.00	0.00	3.18
1137	1143	4.012374	GGGAGAAGAAGAATGACAATGCA	58.988	43.478	0.00	0.00	0.00	3.96
3083	3113	6.541934	TTATTTTGTGGATGGATGCATTGA	57.458	33.333	0.00	0.00	0.00	2.57
3471	3501	0.327924	TGATTCCCGTGGAGCAATGT	59.672	50.000	0.00	0.00	31.21	2.71
4040	4076	6.086765	GCACGTTCTTACATTTTTCATGTGAG	59.913	38.462	0.00	1.31	37.09	3.51
4326	4366	1.800032	CAACGCACGGGCATTGTAT	59.200	52.632	10.90	0.00	38.34	2.29
4336	4376	6.599437	GCACGGGCATTGTATTAGTAAATAG	58.401	40.000	3.77	0.00	40.72	1.73
4337	4377	6.204108	GCACGGGCATTGTATTAGTAAATAGT	59.796	38.462	3.77	0.00	40.72	2.12
4338	4378	7.385752	GCACGGGCATTGTATTAGTAAATAGTA	59.614	37.037	3.77	0.00	40.72	1.82
4339	4379	8.922676	CACGGGCATTGTATTAGTAAATAGTAG	58.077	37.037	0.00	0.00	0.00	2.57
4340	4380	8.645110	ACGGGCATTGTATTAGTAAATAGTAGT	58.355	33.333	0.00	0.00	0.00	2.73
4347	4387	9.888878	TTGTATTAGTAAATAGTAGTAGCGCAG	57.111	33.333	11.47	0.00	0.00	5.18
4348	4388	9.276590	TGTATTAGTAAATAGTAGTAGCGCAGA	57.723	33.333	11.47	0.00	0.00	4.26
4353	4393	8.618702	AGTAAATAGTAGTAGCGCAGATAAGA	57.381	34.615	11.47	0.00	0.00	2.10
4354	4394	8.505625	AGTAAATAGTAGTAGCGCAGATAAGAC	58.494	37.037	11.47	0.00	0.00	3.01
4355	4395	5.883503	ATAGTAGTAGCGCAGATAAGACC	57.116	43.478	11.47	0.00	0.00	3.85
4356	4396	2.885894	AGTAGTAGCGCAGATAAGACCC	59.114	50.000	11.47	0.00	0.00	4.46
4357	4397	1.041437	AGTAGCGCAGATAAGACCCC	58.959	55.000	11.47	0.00	0.00	4.95
4358	4398	0.033642	GTAGCGCAGATAAGACCCCC	59.966	60.000	11.47	0.00	0.00	5.40
4359	4399	0.397957	TAGCGCAGATAAGACCCCCA	60.398	55.000	11.47	0.00	0.00	4.96
4360	4400	1.523938	GCGCAGATAAGACCCCCAC	60.524	63.158	0.30	0.00	0.00	4.61
4361	4401	1.227263	CGCAGATAAGACCCCCACG	60.227	63.158	0.00	0.00	0.00	4.94
4362	4402	1.523938	GCAGATAAGACCCCCACGC	60.524	63.158	0.00	0.00	0.00	5.34
4363	4403	1.972660	GCAGATAAGACCCCCACGCT	61.973	60.000	0.00	0.00	0.00	5.07
4364	4404	1.410004	CAGATAAGACCCCCACGCTA	58.590	55.000	0.00	0.00	0.00	4.26
4365	4405	1.068741	CAGATAAGACCCCCACGCTAC	59.931	57.143	0.00	0.00	0.00	3.58
4366	4406	1.063114	AGATAAGACCCCCACGCTACT	60.063	52.381	0.00	0.00	0.00	2.57
4367	4407	2.176364	AGATAAGACCCCCACGCTACTA	59.824	50.000	0.00	0.00	0.00	1.82
4368	4408	1.767759	TAAGACCCCCACGCTACTAC	58.232	55.000	0.00	0.00	0.00	2.73
4369	4409	0.040794	AAGACCCCCACGCTACTACT	59.959	55.000	0.00	0.00	0.00	2.57
4370	4410	0.921896	AGACCCCCACGCTACTACTA	59.078	55.000	0.00	0.00	0.00	1.82
4371	4411	1.285962	AGACCCCCACGCTACTACTAA	59.714	52.381	0.00	0.00	0.00	2.24
4372	4412	1.680207	GACCCCCACGCTACTACTAAG	59.320	57.143	0.00	0.00	0.00	2.18
4373	4413	0.388294	CCCCCACGCTACTACTAAGC	59.612	60.000	0.00	0.00	36.60	3.09
4379	4419	3.269520	GCTACTACTAAGCGTGCCC	57.730	57.895	0.00	0.00	0.00	5.36
4380	4420	0.458669	GCTACTACTAAGCGTGCCCA	59.541	55.000	0.00	0.00	0.00	5.36
4381	4421	1.801765	GCTACTACTAAGCGTGCCCAC	60.802	57.143	0.00	0.00	0.00	4.61
4382	4422	0.819582	TACTACTAAGCGTGCCCACC	59.180	55.000	0.00	0.00	0.00	4.61
4383	4423	1.153429	CTACTAAGCGTGCCCACCC	60.153	63.158	0.00	0.00	0.00	4.61
4384	4424	2.588856	CTACTAAGCGTGCCCACCCC	62.589	65.000	0.00	0.00	0.00	4.95
4400	4440	4.530857	CCGGCCCGATCCACACTC	62.531	72.222	3.71	0.00	0.00	3.51
4401	4441	4.530857	CGGCCCGATCCACACTCC	62.531	72.222	0.00	0.00	0.00	3.85
4402	4442	4.176752	GGCCCGATCCACACTCCC	62.177	72.222	0.00	0.00	0.00	4.30
4403	4443	3.399181	GCCCGATCCACACTCCCA	61.399	66.667	0.00	0.00	0.00	4.37
4404	4444	2.584608	CCCGATCCACACTCCCAC	59.415	66.667	0.00	0.00	0.00	4.61
4405	4445	2.584608	CCGATCCACACTCCCACC	59.415	66.667	0.00	0.00	0.00	4.61
4406	4446	2.584608	CGATCCACACTCCCACCC	59.415	66.667	0.00	0.00	0.00	4.61
4407	4447	2.998949	GATCCACACTCCCACCCC	59.001	66.667	0.00	0.00	0.00	4.95
4408	4448	1.923395	GATCCACACTCCCACCCCA	60.923	63.158	0.00	0.00	0.00	4.96
4409	4449	1.230281	ATCCACACTCCCACCCCAT	60.230	57.895	0.00	0.00	0.00	4.00
4410	4450	1.281925	ATCCACACTCCCACCCCATC	61.282	60.000	0.00	0.00	0.00	3.51
4411	4451	2.230653	CCACACTCCCACCCCATCA	61.231	63.158	0.00	0.00	0.00	3.07
4412	4452	1.767036	CACACTCCCACCCCATCAA	59.233	57.895	0.00	0.00	0.00	2.57
4413	4453	0.609131	CACACTCCCACCCCATCAAC	60.609	60.000	0.00	0.00	0.00	3.18
4414	4454	0.772124	ACACTCCCACCCCATCAACT	60.772	55.000	0.00	0.00	0.00	3.16
4415	4455	0.322816	CACTCCCACCCCATCAACTG	60.323	60.000	0.00	0.00	0.00	3.16
4416	4456	0.772124	ACTCCCACCCCATCAACTGT	60.772	55.000	0.00	0.00	0.00	3.55
4417	4457	0.035056	CTCCCACCCCATCAACTGTC	60.035	60.000	0.00	0.00	0.00	3.51
4418	4458	1.000896	CCCACCCCATCAACTGTCC	60.001	63.158	0.00	0.00	0.00	4.02
4419	4459	1.000896	CCACCCCATCAACTGTCCC	60.001	63.158	0.00	0.00	0.00	4.46
4420	4460	1.767036	CACCCCATCAACTGTCCCA	59.233	57.895	0.00	0.00	0.00	4.37
4421	4461	0.609131	CACCCCATCAACTGTCCCAC	60.609	60.000	0.00	0.00	0.00	4.61
4422	4462	1.065410	ACCCCATCAACTGTCCCACA	61.065	55.000	0.00	0.00	0.00	4.17
4423	4463	0.609131	CCCCATCAACTGTCCCACAC	60.609	60.000	0.00	0.00	0.00	3.82
4424	4464	0.609131	CCCATCAACTGTCCCACACC	60.609	60.000	0.00	0.00	0.00	4.16
4425	4465	0.110295	CCATCAACTGTCCCACACCA	59.890	55.000	0.00	0.00	0.00	4.17
4426	4466	1.238439	CATCAACTGTCCCACACCAC	58.762	55.000	0.00	0.00	0.00	4.16
4427	4467	0.110486	ATCAACTGTCCCACACCACC	59.890	55.000	0.00	0.00	0.00	4.61
4428	4468	1.528309	CAACTGTCCCACACCACCC	60.528	63.158	0.00	0.00	0.00	4.61
4429	4469	2.004120	AACTGTCCCACACCACCCA	61.004	57.895	0.00	0.00	0.00	4.51
4430	4470	2.113139	CTGTCCCACACCACCCAC	59.887	66.667	0.00	0.00	0.00	4.61
4431	4471	3.491598	CTGTCCCACACCACCCACC	62.492	68.421	0.00	0.00	0.00	4.61
4432	4472	4.280019	GTCCCACACCACCCACCC	62.280	72.222	0.00	0.00	0.00	4.61
4448	4488	4.783667	CCCCCGTCTGTCGAAAAA	57.216	55.556	0.00	0.00	42.86	1.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
342	346	4.646945	AGCTTCTCTCATCAATTACCTCGA	59.353	41.667	0.00	0.00	0.00	4.04
422	426	1.134729	CATGTAAGGGCATTTGGGCAC	60.135	52.381	0.00	0.00	45.66	5.01
671	675	9.950680	ATTCTATTTGGCATCTTAAACAATACG	57.049	29.630	0.00	0.00	0.00	3.06
734	738	7.797038	AGTTTACCTTCGTGTACTTTTCATT	57.203	32.000	0.00	0.00	0.00	2.57
1566	1592	7.759433	GCTATAAGCAAAAATAACAAGCAAGGA	59.241	33.333	0.00	0.00	41.89	3.36
2954	2984	2.236146	TCCACAGATAATCGCACAAGGT	59.764	45.455	0.00	0.00	0.00	3.50
3083	3113	9.845740	AAAAACTAAAAGCCTGGAAACATAAAT	57.154	25.926	0.00	0.00	41.51	1.40
3471	3501	6.606796	ACCCAATACATTCTGATGCAACATTA	59.393	34.615	0.00	0.00	36.72	1.90
4040	4076	6.595772	CTTCATACAGTTAGCATGAAGGTC	57.404	41.667	13.10	0.00	46.17	3.85
4336	4376	2.030096	GGGGTCTTATCTGCGCTACTAC	60.030	54.545	9.73	0.00	0.00	2.73
4337	4377	2.236766	GGGGTCTTATCTGCGCTACTA	58.763	52.381	9.73	0.00	0.00	1.82
4338	4378	1.041437	GGGGTCTTATCTGCGCTACT	58.959	55.000	9.73	0.00	0.00	2.57
4339	4379	0.033642	GGGGGTCTTATCTGCGCTAC	59.966	60.000	9.73	0.00	0.00	3.58
4340	4380	0.397957	TGGGGGTCTTATCTGCGCTA	60.398	55.000	9.73	0.00	0.00	4.26
4341	4381	1.689233	TGGGGGTCTTATCTGCGCT	60.689	57.895	9.73	0.00	0.00	5.92
4342	4382	1.523938	GTGGGGGTCTTATCTGCGC	60.524	63.158	0.00	0.00	0.00	6.09
4343	4383	1.227263	CGTGGGGGTCTTATCTGCG	60.227	63.158	0.00	0.00	0.00	5.18
4344	4384	1.523938	GCGTGGGGGTCTTATCTGC	60.524	63.158	0.00	0.00	0.00	4.26
4345	4385	1.068741	GTAGCGTGGGGGTCTTATCTG	59.931	57.143	0.00	0.00	0.00	2.90
4346	4386	1.063114	AGTAGCGTGGGGGTCTTATCT	60.063	52.381	0.00	0.00	0.00	1.98
4347	4387	1.411041	AGTAGCGTGGGGGTCTTATC	58.589	55.000	0.00	0.00	0.00	1.75
4348	4388	2.091444	AGTAGTAGCGTGGGGGTCTTAT	60.091	50.000	0.00	0.00	0.00	1.73
4349	4389	1.285962	AGTAGTAGCGTGGGGGTCTTA	59.714	52.381	0.00	0.00	0.00	2.10
4350	4390	0.040794	AGTAGTAGCGTGGGGGTCTT	59.959	55.000	0.00	0.00	0.00	3.01
4351	4391	0.921896	TAGTAGTAGCGTGGGGGTCT	59.078	55.000	0.00	0.00	0.00	3.85
4352	4392	1.680207	CTTAGTAGTAGCGTGGGGGTC	59.320	57.143	0.00	0.00	0.00	4.46
4353	4393	1.772836	CTTAGTAGTAGCGTGGGGGT	58.227	55.000	0.00	0.00	0.00	4.95
4354	4394	0.388294	GCTTAGTAGTAGCGTGGGGG	59.612	60.000	0.00	0.00	0.00	5.40
4355	4395	3.961576	GCTTAGTAGTAGCGTGGGG	57.038	57.895	0.00	0.00	0.00	4.96
4361	4401	0.458669	TGGGCACGCTTAGTAGTAGC	59.541	55.000	0.00	0.00	35.29	3.58
4362	4402	1.202382	GGTGGGCACGCTTAGTAGTAG	60.202	57.143	0.00	0.00	0.00	2.57
4363	4403	0.819582	GGTGGGCACGCTTAGTAGTA	59.180	55.000	0.00	0.00	0.00	1.82
4364	4404	1.595357	GGTGGGCACGCTTAGTAGT	59.405	57.895	0.00	0.00	0.00	2.73
4365	4405	1.153429	GGGTGGGCACGCTTAGTAG	60.153	63.158	0.00	0.00	40.60	2.57
4366	4406	2.662070	GGGGTGGGCACGCTTAGTA	61.662	63.158	0.00	0.00	42.97	1.82
4367	4407	4.029809	GGGGTGGGCACGCTTAGT	62.030	66.667	0.00	0.00	42.97	2.24
4383	4423	4.530857	GAGTGTGGATCGGGCCGG	62.531	72.222	27.98	7.65	0.00	6.13
4384	4424	4.530857	GGAGTGTGGATCGGGCCG	62.531	72.222	22.51	22.51	0.00	6.13
4385	4425	4.176752	GGGAGTGTGGATCGGGCC	62.177	72.222	0.00	0.00	0.00	5.80
4386	4426	3.399181	TGGGAGTGTGGATCGGGC	61.399	66.667	0.00	0.00	0.00	6.13
4387	4427	2.584608	GTGGGAGTGTGGATCGGG	59.415	66.667	0.00	0.00	0.00	5.14
4388	4428	2.584608	GGTGGGAGTGTGGATCGG	59.415	66.667	0.00	0.00	0.00	4.18
4389	4429	2.584608	GGGTGGGAGTGTGGATCG	59.415	66.667	0.00	0.00	0.00	3.69
4390	4430	1.281925	ATGGGGTGGGAGTGTGGATC	61.282	60.000	0.00	0.00	0.00	3.36
4391	4431	1.230281	ATGGGGTGGGAGTGTGGAT	60.230	57.895	0.00	0.00	0.00	3.41
4392	4432	1.923395	GATGGGGTGGGAGTGTGGA	60.923	63.158	0.00	0.00	0.00	4.02
4393	4433	1.788518	TTGATGGGGTGGGAGTGTGG	61.789	60.000	0.00	0.00	0.00	4.17
4394	4434	0.609131	GTTGATGGGGTGGGAGTGTG	60.609	60.000	0.00	0.00	0.00	3.82
4395	4435	0.772124	AGTTGATGGGGTGGGAGTGT	60.772	55.000	0.00	0.00	0.00	3.55
4396	4436	0.322816	CAGTTGATGGGGTGGGAGTG	60.323	60.000	0.00	0.00	0.00	3.51
4397	4437	0.772124	ACAGTTGATGGGGTGGGAGT	60.772	55.000	0.00	0.00	0.00	3.85
4398	4438	0.035056	GACAGTTGATGGGGTGGGAG	60.035	60.000	0.00	0.00	0.00	4.30
4399	4439	1.497309	GGACAGTTGATGGGGTGGGA	61.497	60.000	0.00	0.00	0.00	4.37
4400	4440	1.000896	GGACAGTTGATGGGGTGGG	60.001	63.158	0.00	0.00	0.00	4.61
4401	4441	1.000896	GGGACAGTTGATGGGGTGG	60.001	63.158	0.00	0.00	0.00	4.61
4402	4442	0.609131	GTGGGACAGTTGATGGGGTG	60.609	60.000	0.00	0.00	41.80	4.61
4403	4443	1.065410	TGTGGGACAGTTGATGGGGT	61.065	55.000	0.00	0.00	41.80	4.95
4404	4444	0.609131	GTGTGGGACAGTTGATGGGG	60.609	60.000	0.00	0.00	41.80	4.96
4405	4445	0.609131	GGTGTGGGACAGTTGATGGG	60.609	60.000	0.00	0.00	41.80	4.00
4406	4446	0.110295	TGGTGTGGGACAGTTGATGG	59.890	55.000	0.00	0.00	41.80	3.51
4407	4447	1.238439	GTGGTGTGGGACAGTTGATG	58.762	55.000	0.00	0.00	41.80	3.07
4408	4448	0.110486	GGTGGTGTGGGACAGTTGAT	59.890	55.000	0.00	0.00	41.80	2.57
4409	4449	1.529796	GGTGGTGTGGGACAGTTGA	59.470	57.895	0.00	0.00	41.80	3.18
4410	4450	1.528309	GGGTGGTGTGGGACAGTTG	60.528	63.158	0.00	0.00	41.80	3.16
4411	4451	2.004120	TGGGTGGTGTGGGACAGTT	61.004	57.895	0.00	0.00	41.80	3.16
4412	4452	2.367648	TGGGTGGTGTGGGACAGT	60.368	61.111	0.00	0.00	41.80	3.55
4413	4453	2.113139	GTGGGTGGTGTGGGACAG	59.887	66.667	0.00	0.00	41.80	3.51
4414	4454	3.494254	GGTGGGTGGTGTGGGACA	61.494	66.667	0.00	0.00	0.00	4.02
4415	4455	4.280019	GGGTGGGTGGTGTGGGAC	62.280	72.222	0.00	0.00	0.00	4.46
4431	4471	4.783667	TTTTTCGACAGACGGGGG	57.216	55.556	0.00	0.00	42.82	5.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.