Multiple sequence alignment - TraesCS5A01G323500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G323500 chr5A 100.000 4349 0 0 971 5319 535360154 535364502 0.000000e+00 8032.0
1 TraesCS5A01G323500 chr5A 100.000 318 0 0 1 318 535359184 535359501 5.930000e-164 588.0
2 TraesCS5A01G323500 chr5A 90.643 171 13 2 3490 3657 567110963 567110793 1.930000e-54 224.0
3 TraesCS5A01G323500 chr5D 92.755 1325 57 13 3506 4810 421851997 421853302 0.000000e+00 1879.0
4 TraesCS5A01G323500 chr5D 92.166 1085 56 13 2447 3507 421850804 421851883 0.000000e+00 1506.0
5 TraesCS5A01G323500 chr5D 90.456 964 48 21 1000 1936 421849191 421850137 0.000000e+00 1230.0
6 TraesCS5A01G323500 chr5D 94.949 396 17 1 2160 2555 421850466 421850858 7.570000e-173 617.0
7 TraesCS5A01G323500 chr5D 82.735 446 35 18 4820 5235 421853865 421854298 5.060000e-95 359.0
8 TraesCS5A01G323500 chr5D 82.647 340 22 17 1 318 421848614 421848938 3.160000e-67 267.0
9 TraesCS5A01G323500 chr5D 93.671 158 8 2 2001 2158 421850232 421850387 8.910000e-58 235.0
10 TraesCS5A01G323500 chr5D 91.515 165 12 1 3486 3648 322370167 322370003 5.360000e-55 226.0
11 TraesCS5A01G323500 chr5D 93.204 103 7 0 5217 5319 421855017 421855119 9.230000e-33 152.0
12 TraesCS5A01G323500 chr5D 94.118 51 3 0 2447 2497 421850858 421850908 1.590000e-10 78.7
13 TraesCS5A01G323500 chr5B 92.423 1201 63 14 2447 3629 508265482 508266672 0.000000e+00 1688.0
14 TraesCS5A01G323500 chr5B 91.920 1151 62 13 3487 4611 508266671 508267816 0.000000e+00 1581.0
15 TraesCS5A01G323500 chr5B 90.968 930 39 24 1000 1900 508263706 508264619 0.000000e+00 1210.0
16 TraesCS5A01G323500 chr5B 94.444 396 19 1 2160 2555 508265144 508265536 1.640000e-169 606.0
17 TraesCS5A01G323500 chr5B 79.929 563 48 31 4812 5317 508268338 508268892 2.360000e-93 353.0
18 TraesCS5A01G323500 chr5B 94.146 205 7 2 1954 2157 508264866 508265066 1.860000e-79 307.0
19 TraesCS5A01G323500 chr5B 78.246 285 30 18 35 318 508263365 508263618 2.570000e-33 154.0
20 TraesCS5A01G323500 chr5B 94.118 51 3 0 2447 2497 508265536 508265586 1.590000e-10 78.7
21 TraesCS5A01G323500 chr4D 91.429 175 12 2 3484 3655 351669914 351670088 2.480000e-58 237.0
22 TraesCS5A01G323500 chr2D 92.500 160 10 1 3490 3647 526525118 526524959 1.490000e-55 228.0
23 TraesCS5A01G323500 chr6A 92.453 159 9 2 3499 3655 5939228 5939071 1.930000e-54 224.0
24 TraesCS5A01G323500 chr6A 90.173 173 13 2 3484 3652 97802520 97802692 6.930000e-54 222.0
25 TraesCS5A01G323500 chr3D 89.831 177 10 4 3487 3659 535780935 535781107 2.490000e-53 220.0
26 TraesCS5A01G323500 chr3D 88.172 186 6 4 3127 3310 18426782 18426611 1.940000e-49 207.0
27 TraesCS5A01G323500 chrUn 87.634 186 7 4 3127 3310 37332897 37332726 9.030000e-48 202.0
28 TraesCS5A01G323500 chr3A 87.027 185 8 3 3128 3310 26004116 26004286 1.510000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G323500 chr5A 535359184 535364502 5318 False 4310.000000 8032 100.000000 1 5319 2 chr5A.!!$F1 5318
1 TraesCS5A01G323500 chr5D 421848614 421855119 6505 False 702.633333 1879 90.744556 1 5319 9 chr5D.!!$F1 5318
2 TraesCS5A01G323500 chr5B 508263365 508268892 5527 False 747.212500 1688 89.524250 35 5317 8 chr5B.!!$F1 5282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 187 0.040425 CCAAACCGAAACTGAAGCCG 60.040 55.000 0.00 0.0 0.00 5.52 F
213 238 0.174389 GTAGCAGTAGCAGCAGCAGA 59.826 55.000 3.17 0.0 45.49 4.26 F
1501 1553 0.107945 GCCTCGATTTGCCTCAGACT 60.108 55.000 0.00 0.0 0.00 3.24 F
1996 2262 0.181350 AGCCACATAGGTGCCTAAGC 59.819 55.000 0.96 0.0 43.88 3.09 F
2293 2637 1.238439 ATGTTGACAGCTGGAAACCG 58.762 50.000 23.27 0.0 0.00 4.44 F
2706 3152 1.891150 AGGTTCATTGCTGCTTCCTTG 59.109 47.619 0.00 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 1515 0.508641 CGCAATTGGATCGGATCGAC 59.491 55.000 11.62 0.04 39.18 4.20 R
1638 1692 0.661020 AAACAAAACCGACTGAGGCG 59.339 50.000 0.00 0.00 33.69 5.52 R
2571 2956 2.074547 ACACTACGAAACATGGACCG 57.925 50.000 0.00 0.00 0.00 4.79 R
3649 4352 2.225091 TGGAACCACCTCAAGCATGAAT 60.225 45.455 0.00 0.00 39.86 2.57 R
4002 4707 0.322546 AAATGACGGGAAGGGTCAGC 60.323 55.000 0.99 0.00 46.55 4.26 R
4654 5381 1.329906 CATCTTTGATCAGCTCGGTGC 59.670 52.381 0.00 0.00 43.29 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 98 6.812160 AGTAGTAGTCCAAAAATACTTCGCTG 59.188 38.462 0.00 0.00 32.25 5.18
92 112 2.048784 GCTGTCGTGCTCTGCAGA 60.049 61.111 17.19 17.19 40.08 4.26
93 113 1.665916 GCTGTCGTGCTCTGCAGAA 60.666 57.895 18.85 0.00 40.08 3.02
94 114 1.224069 GCTGTCGTGCTCTGCAGAAA 61.224 55.000 18.85 6.25 40.08 2.52
95 115 1.220529 CTGTCGTGCTCTGCAGAAAA 58.779 50.000 18.85 5.85 40.08 2.29
96 116 1.599071 CTGTCGTGCTCTGCAGAAAAA 59.401 47.619 18.85 3.08 40.08 1.94
97 117 2.221169 TGTCGTGCTCTGCAGAAAAAT 58.779 42.857 18.85 0.00 40.08 1.82
98 118 2.618241 TGTCGTGCTCTGCAGAAAAATT 59.382 40.909 18.85 0.00 40.08 1.82
99 119 3.229552 GTCGTGCTCTGCAGAAAAATTC 58.770 45.455 18.85 4.03 40.08 2.17
100 120 2.877786 TCGTGCTCTGCAGAAAAATTCA 59.122 40.909 18.85 6.16 40.08 2.57
104 128 4.916249 GTGCTCTGCAGAAAAATTCAAGAG 59.084 41.667 18.85 2.27 40.08 2.85
132 156 1.449782 CCCAACCAAAACCCAAGCC 59.550 57.895 0.00 0.00 0.00 4.35
133 157 1.341156 CCCAACCAAAACCCAAGCCA 61.341 55.000 0.00 0.00 0.00 4.75
136 160 0.180171 AACCAAAACCCAAGCCAAGC 59.820 50.000 0.00 0.00 0.00 4.01
137 161 1.071299 CCAAAACCCAAGCCAAGCC 59.929 57.895 0.00 0.00 0.00 4.35
162 187 0.040425 CCAAACCGAAACTGAAGCCG 60.040 55.000 0.00 0.00 0.00 5.52
164 189 0.179040 AAACCGAAACTGAAGCCGGA 60.179 50.000 5.05 0.00 44.29 5.14
210 235 1.153745 ACGTAGCAGTAGCAGCAGC 60.154 57.895 0.00 0.00 45.49 5.25
211 236 1.153765 CGTAGCAGTAGCAGCAGCA 60.154 57.895 3.17 0.00 45.49 4.41
212 237 1.144565 CGTAGCAGTAGCAGCAGCAG 61.145 60.000 3.17 0.00 45.49 4.24
213 238 0.174389 GTAGCAGTAGCAGCAGCAGA 59.826 55.000 3.17 0.00 45.49 4.26
214 239 1.117994 TAGCAGTAGCAGCAGCAGAT 58.882 50.000 3.17 0.00 45.49 2.90
215 240 0.462225 AGCAGTAGCAGCAGCAGATG 60.462 55.000 3.17 0.00 45.49 2.90
216 241 1.437772 GCAGTAGCAGCAGCAGATGG 61.438 60.000 3.17 0.00 45.49 3.51
217 242 0.177373 CAGTAGCAGCAGCAGATGGA 59.823 55.000 3.17 0.00 45.49 3.41
218 243 1.129917 AGTAGCAGCAGCAGATGGAT 58.870 50.000 3.17 0.00 45.49 3.41
219 244 1.070445 AGTAGCAGCAGCAGATGGATC 59.930 52.381 3.17 0.00 45.49 3.36
220 245 0.395686 TAGCAGCAGCAGATGGATCC 59.604 55.000 4.20 4.20 45.49 3.36
221 246 1.153025 GCAGCAGCAGATGGATCCA 60.153 57.895 18.88 18.88 41.58 3.41
222 247 0.537600 GCAGCAGCAGATGGATCCAT 60.538 55.000 27.66 27.66 41.58 3.41
225 250 2.693591 CAGCAGCAGATGGATCCATTTT 59.306 45.455 27.93 16.56 36.70 1.82
243 268 2.884997 TTCCATTCCCATCCACGGCG 62.885 60.000 4.80 4.80 0.00 6.46
285 310 2.056906 CTCCCCCGGCCCAATAAGAG 62.057 65.000 0.00 0.00 0.00 2.85
286 311 2.203351 CCCCGGCCCAATAAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
1072 1108 1.446099 GCGGTGAAGATGAGCGACA 60.446 57.895 0.00 0.00 36.43 4.35
1076 1112 1.419374 GTGAAGATGAGCGACACGTT 58.581 50.000 0.00 0.00 0.00 3.99
1082 1118 3.112709 GAGCGACACGTTCTGCCC 61.113 66.667 0.00 0.00 34.45 5.36
1410 1446 1.153784 CACCATCGCAAACATGGCC 60.154 57.895 0.00 0.00 44.32 5.36
1422 1459 4.741239 ATGGCCGACAGGTCCCCT 62.741 66.667 0.00 0.00 42.85 4.79
1428 1476 2.359967 CGACAGGTCCCCTTCCTCC 61.360 68.421 0.00 0.00 32.37 4.30
1433 1481 2.371259 GGTCCCCTTCCTCCTCTGC 61.371 68.421 0.00 0.00 0.00 4.26
1444 1492 3.023116 CCTCTGCCCCCATTCCCA 61.023 66.667 0.00 0.00 0.00 4.37
1445 1493 2.397902 CCTCTGCCCCCATTCCCAT 61.398 63.158 0.00 0.00 0.00 4.00
1462 1514 2.807967 CCCATGCCGTCTTATATGTGTG 59.192 50.000 0.00 0.00 0.00 3.82
1463 1515 2.807967 CCATGCCGTCTTATATGTGTGG 59.192 50.000 0.00 0.00 0.00 4.17
1492 1544 0.451383 TCCAATTGCGCCTCGATTTG 59.549 50.000 4.18 0.00 0.00 2.32
1493 1545 1.141591 CCAATTGCGCCTCGATTTGC 61.142 55.000 4.18 0.00 0.00 3.68
1500 1552 1.424493 CGCCTCGATTTGCCTCAGAC 61.424 60.000 0.00 0.00 0.00 3.51
1501 1553 0.107945 GCCTCGATTTGCCTCAGACT 60.108 55.000 0.00 0.00 0.00 3.24
1502 1554 1.677217 GCCTCGATTTGCCTCAGACTT 60.677 52.381 0.00 0.00 0.00 3.01
1503 1555 2.275318 CCTCGATTTGCCTCAGACTTC 58.725 52.381 0.00 0.00 0.00 3.01
1504 1556 1.923204 CTCGATTTGCCTCAGACTTCG 59.077 52.381 0.00 0.00 0.00 3.79
1508 1560 2.450609 TTTGCCTCAGACTTCGGTAC 57.549 50.000 0.00 0.00 0.00 3.34
1511 1563 2.366533 TGCCTCAGACTTCGGTACTAG 58.633 52.381 0.00 0.00 0.00 2.57
1514 1566 3.312146 GCCTCAGACTTCGGTACTAGTAC 59.688 52.174 22.53 22.53 35.40 2.73
1519 1571 6.336566 TCAGACTTCGGTACTAGTACTACTG 58.663 44.000 27.71 23.44 36.36 2.74
1539 1591 1.230324 GTTAGCAGCGGGATCAATCC 58.770 55.000 0.01 0.01 46.41 3.01
1550 1602 1.294659 GATCAATCCATCGCTCGCCC 61.295 60.000 0.00 0.00 0.00 6.13
1575 1627 2.440247 GGCCCCCGTCCTGATTTG 60.440 66.667 0.00 0.00 0.00 2.32
1583 1635 3.701040 CCCCGTCCTGATTTGATTTGATT 59.299 43.478 0.00 0.00 0.00 2.57
1584 1636 4.160252 CCCCGTCCTGATTTGATTTGATTT 59.840 41.667 0.00 0.00 0.00 2.17
1585 1637 5.104374 CCCGTCCTGATTTGATTTGATTTG 58.896 41.667 0.00 0.00 0.00 2.32
1586 1638 5.105797 CCCGTCCTGATTTGATTTGATTTGA 60.106 40.000 0.00 0.00 0.00 2.69
1594 1646 8.203937 TGATTTGATTTGATTTGATTGATGGC 57.796 30.769 0.00 0.00 0.00 4.40
1638 1692 5.868801 GTGATAGATTTATCTCTGCTGGCTC 59.131 44.000 4.99 0.00 38.32 4.70
1640 1694 1.797635 GATTTATCTCTGCTGGCTCGC 59.202 52.381 0.00 0.00 0.00 5.03
1644 1698 3.767806 CTCTGCTGGCTCGCCTCA 61.768 66.667 9.65 6.42 36.94 3.86
1715 1770 4.295870 GTTTGTTAGGGCTTGTGCTTTAC 58.704 43.478 0.00 0.00 39.59 2.01
1735 1794 7.660030 TTTACCCTGTAGTAAGTATGGGTAC 57.340 40.000 8.08 0.00 46.20 3.34
1780 1839 2.041485 TGCCTTTCACATGGATCTGGAA 59.959 45.455 0.00 0.00 0.00 3.53
1796 1855 3.028130 CTGGAAGAGGGAGGTTCTACTC 58.972 54.545 0.00 0.00 34.07 2.59
1919 1987 3.250323 CATGTCAGGCTCGTCGCG 61.250 66.667 0.00 0.00 40.44 5.87
1932 2000 1.842686 GTCGCGCTCTCGAATGATG 59.157 57.895 5.56 0.00 40.43 3.07
1936 2004 0.807667 GCGCTCTCGAATGATGGTGT 60.808 55.000 0.00 0.00 38.10 4.16
1996 2262 0.181350 AGCCACATAGGTGCCTAAGC 59.819 55.000 0.96 0.00 43.88 3.09
2043 2309 4.669206 ACAACATGGCAAACTTGAATCA 57.331 36.364 0.00 0.00 0.00 2.57
2044 2310 5.217978 ACAACATGGCAAACTTGAATCAT 57.782 34.783 0.00 0.00 0.00 2.45
2045 2311 5.613329 ACAACATGGCAAACTTGAATCATT 58.387 33.333 0.00 0.00 0.00 2.57
2046 2312 5.467399 ACAACATGGCAAACTTGAATCATTG 59.533 36.000 0.00 0.00 0.00 2.82
2061 2327 4.563337 ATCATTGATTGATGAACTGCCG 57.437 40.909 0.00 0.00 43.60 5.69
2175 2519 7.418337 AGTTTATGTGGGTCTTTTTGTTTCT 57.582 32.000 0.00 0.00 0.00 2.52
2200 2544 9.874205 CTAACATTTGGATTTTGACCATACATT 57.126 29.630 0.00 0.00 37.26 2.71
2201 2545 8.776376 AACATTTGGATTTTGACCATACATTC 57.224 30.769 0.00 0.00 37.26 2.67
2211 2555 6.990341 TTGACCATACATTCACATCTCTTG 57.010 37.500 0.00 0.00 0.00 3.02
2293 2637 1.238439 ATGTTGACAGCTGGAAACCG 58.762 50.000 23.27 0.00 0.00 4.44
2297 2641 2.045561 TGACAGCTGGAAACCGAAAA 57.954 45.000 19.93 0.00 0.00 2.29
2329 2673 5.043903 ACTACAGTTATACTTGCATGCGAG 58.956 41.667 29.80 29.80 0.00 5.03
2341 2685 2.353579 TGCATGCGAGAACTGATGAATG 59.646 45.455 14.09 0.00 0.00 2.67
2354 2698 9.745880 AGAACTGATGAATGAATTAAATGCATC 57.254 29.630 0.00 12.07 39.61 3.91
2378 2722 6.988580 TCTAGCTTGGTATGTCATCAATTCAG 59.011 38.462 0.00 0.00 0.00 3.02
2592 2977 3.176708 CGGTCCATGTTTCGTAGTGTAG 58.823 50.000 0.00 0.00 0.00 2.74
2675 3113 2.924421 TGCACAACACTTGTCCATGTA 58.076 42.857 0.00 0.00 43.23 2.29
2706 3152 1.891150 AGGTTCATTGCTGCTTCCTTG 59.109 47.619 0.00 0.00 0.00 3.61
2716 3162 2.567169 GCTGCTTCCTTGGGGTTATTTT 59.433 45.455 0.00 0.00 0.00 1.82
2722 3168 5.187772 GCTTCCTTGGGGTTATTTTCAAGAT 59.812 40.000 0.00 0.00 38.96 2.40
2742 3188 9.832445 TCAAGATTTTCCCTATACAGTAACATC 57.168 33.333 0.00 0.00 0.00 3.06
2758 3204 2.566913 ACATCGTACTGGTTTGTTGCA 58.433 42.857 0.00 0.00 0.00 4.08
2949 3395 6.093633 GGACTGTAAAAGGTACATGATGTTCC 59.906 42.308 12.70 12.70 37.99 3.62
2956 3402 4.603131 AGGTACATGATGTTCCAGCAAAT 58.397 39.130 20.98 0.00 39.88 2.32
2962 3408 6.860080 ACATGATGTTCCAGCAAATTTCTAG 58.140 36.000 0.00 0.00 32.21 2.43
2968 3414 6.872920 TGTTCCAGCAAATTTCTAGTTTTGT 58.127 32.000 13.27 3.25 35.69 2.83
2984 3430 5.861727 AGTTTTGTAGACATTAGAACCCGT 58.138 37.500 0.00 0.00 0.00 5.28
2991 3437 4.759782 AGACATTAGAACCCGTCAGAATG 58.240 43.478 0.00 0.00 37.63 2.67
3001 3447 3.071457 ACCCGTCAGAATGCATGATATGA 59.929 43.478 0.00 0.00 34.76 2.15
3017 3463 6.778834 TGATATGATGCCATTCTTTGTTGT 57.221 33.333 0.00 0.00 34.31 3.32
3018 3464 7.878547 TGATATGATGCCATTCTTTGTTGTA 57.121 32.000 0.00 0.00 34.31 2.41
3021 3467 9.754382 GATATGATGCCATTCTTTGTTGTATTT 57.246 29.630 0.00 0.00 34.31 1.40
3492 3938 4.070716 CTCAATCACTGGCATCTATTCCC 58.929 47.826 0.00 0.00 0.00 3.97
3497 3943 2.053244 ACTGGCATCTATTCCCTCTGG 58.947 52.381 0.00 0.00 0.00 3.86
3579 4140 5.985911 TGCCTTTTAGAGTATAGGTTCACC 58.014 41.667 0.00 0.00 0.00 4.02
3597 4300 4.415596 TCACCCATTTTGCTCCTTATGTT 58.584 39.130 0.00 0.00 0.00 2.71
3649 4352 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
3795 4498 6.887626 TGGTAGATGCGATGTATGTAACTA 57.112 37.500 0.00 0.00 0.00 2.24
3843 4548 6.016777 ACTCTTTAGACATGAACCTGCTTTTG 60.017 38.462 0.00 0.00 0.00 2.44
4002 4707 1.265905 AGCCGCTTAAAGGTTTGAACG 59.734 47.619 0.00 0.00 0.00 3.95
4019 4724 2.990479 GCTGACCCTTCCCGTCAT 59.010 61.111 0.00 0.00 39.43 3.06
4033 4738 4.575885 TCCCGTCATTTACTTTCTCCTTG 58.424 43.478 0.00 0.00 0.00 3.61
4036 4741 4.378459 CCGTCATTTACTTTCTCCTTGTGC 60.378 45.833 0.00 0.00 0.00 4.57
4057 4762 1.174078 TGTCACTGTCGCCGAGGTAA 61.174 55.000 0.00 0.00 0.00 2.85
4068 4775 2.997986 CGCCGAGGTAACATTTAACACT 59.002 45.455 0.00 0.00 41.41 3.55
4069 4776 3.061697 CGCCGAGGTAACATTTAACACTC 59.938 47.826 0.00 0.00 41.41 3.51
4070 4777 3.061697 GCCGAGGTAACATTTAACACTCG 59.938 47.826 0.00 0.00 44.05 4.18
4076 4783 4.634443 GGTAACATTTAACACTCGGATGCT 59.366 41.667 0.00 0.00 0.00 3.79
4077 4784 5.123344 GGTAACATTTAACACTCGGATGCTT 59.877 40.000 0.00 0.00 0.00 3.91
4080 4787 2.177394 TTAACACTCGGATGCTTGCA 57.823 45.000 0.00 0.00 0.00 4.08
4081 4788 1.438651 TAACACTCGGATGCTTGCAC 58.561 50.000 0.00 0.00 0.00 4.57
4135 4842 1.672881 GAAGGCACCATCAGGAATTCG 59.327 52.381 0.00 0.00 38.69 3.34
4232 4939 0.179100 CACACCATAGGAGCCGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
4318 5026 0.591659 GAGGGGAGTTTCGTTGTTGC 59.408 55.000 0.00 0.00 0.00 4.17
4521 5241 1.385528 TGATACGGCAGCGAAGTCTA 58.614 50.000 0.00 0.00 0.00 2.59
4522 5242 1.746787 TGATACGGCAGCGAAGTCTAA 59.253 47.619 0.00 0.00 0.00 2.10
4533 5253 5.347342 CAGCGAAGTCTAAGTGATCATTCT 58.653 41.667 0.00 0.00 0.00 2.40
4535 5255 5.105554 AGCGAAGTCTAAGTGATCATTCTGT 60.106 40.000 0.00 0.00 0.00 3.41
4570 5297 6.491403 GCAAAATGTCCATACTATCCTGGATT 59.509 38.462 15.55 0.00 43.20 3.01
4663 5390 0.468214 TATAGCAGAGGCACCGAGCT 60.468 55.000 8.27 8.27 44.61 4.09
4742 5471 2.801342 GCACAGGAGGAAGATCGATGTC 60.801 54.545 0.54 0.00 0.00 3.06
4755 5484 1.812525 GATGTCTGCTCTCTCGGCA 59.187 57.895 0.00 0.00 38.10 5.69
4778 5507 1.821216 CCTGCCGGAAAGCTTTTCTA 58.179 50.000 14.05 0.00 0.00 2.10
4806 5535 4.508128 CGGTGACCGGCGCATAGT 62.508 66.667 17.80 2.03 44.15 2.12
4810 5539 1.017177 GTGACCGGCGCATAGTTGAA 61.017 55.000 10.83 0.00 0.00 2.69
4826 6119 5.774498 AGTTGAAACCCTTGTTTGAGATC 57.226 39.130 0.00 0.00 44.57 2.75
4828 6121 5.300286 AGTTGAAACCCTTGTTTGAGATCAG 59.700 40.000 0.00 0.00 44.57 2.90
4850 6144 2.358737 GTAGCCCAAGCGTGCAGT 60.359 61.111 0.00 0.00 46.67 4.40
4851 6145 2.358615 TAGCCCAAGCGTGCAGTG 60.359 61.111 0.00 0.00 46.67 3.66
4854 6148 4.034258 CCCAAGCGTGCAGTGCAG 62.034 66.667 20.42 13.74 40.08 4.41
4855 6149 4.695231 CCAAGCGTGCAGTGCAGC 62.695 66.667 20.42 22.47 40.08 5.25
4856 6150 3.657059 CAAGCGTGCAGTGCAGCT 61.657 61.111 26.37 26.37 41.80 4.24
4860 6154 2.357396 CGTGCAGTGCAGCTGGTA 60.357 61.111 20.42 0.00 45.14 3.25
4861 6155 1.960763 CGTGCAGTGCAGCTGGTAA 60.961 57.895 20.42 0.00 45.14 2.85
4862 6156 1.506309 CGTGCAGTGCAGCTGGTAAA 61.506 55.000 20.42 0.00 45.14 2.01
4863 6157 0.883833 GTGCAGTGCAGCTGGTAAAT 59.116 50.000 20.42 0.00 45.14 1.40
4864 6158 1.270550 GTGCAGTGCAGCTGGTAAATT 59.729 47.619 20.42 0.00 45.14 1.82
4865 6159 2.487762 GTGCAGTGCAGCTGGTAAATTA 59.512 45.455 20.42 0.00 45.14 1.40
4869 6163 5.417266 TGCAGTGCAGCTGGTAAATTATAAA 59.583 36.000 15.37 0.00 45.14 1.40
4939 6246 4.124238 GTGTGCGTAGGCTAATTTCCATA 58.876 43.478 9.11 0.00 40.82 2.74
4951 6258 9.454859 AGGCTAATTTCCATAATATCTACTTGC 57.545 33.333 0.00 0.00 0.00 4.01
4971 6278 0.034896 TCTGTTTTCTCCGAGGGCAC 59.965 55.000 0.00 0.00 0.00 5.01
4975 6282 0.036306 TTTTCTCCGAGGGCACTTCC 59.964 55.000 0.00 0.00 0.00 3.46
5020 6327 0.107459 GACTGCATGGGGAGAGGTTC 60.107 60.000 0.00 0.00 36.18 3.62
5024 6331 1.034292 GCATGGGGAGAGGTTCTTGC 61.034 60.000 0.00 0.00 0.00 4.01
5029 6336 0.980423 GGGAGAGGTTCTTGCACTCT 59.020 55.000 3.60 3.60 43.81 3.24
5039 6365 1.642037 CTTGCACTCTGGCGGTGATG 61.642 60.000 1.79 0.00 36.89 3.07
5090 6416 3.322254 GCTACAGGGCTGTATCTGTATGT 59.678 47.826 0.00 0.00 44.15 2.29
5104 6430 1.067060 TGTATGTCGGCGATTCTGGAG 59.933 52.381 14.79 0.00 0.00 3.86
5119 6448 3.499338 TCTGGAGTAAGTACCGGTTGAA 58.501 45.455 15.04 0.00 34.49 2.69
5142 6471 1.138247 CGGCGGTACTGGACTGTAC 59.862 63.158 3.34 10.03 41.31 2.90
5170 6499 1.893808 CATGGACTGTATGCCGGCC 60.894 63.158 26.77 9.46 0.00 6.13
5287 7353 0.248907 ACCCGTATGCTCGTTCATCG 60.249 55.000 0.00 0.00 41.41 3.84
5292 7358 0.317854 TATGCTCGTTCATCGCCTCG 60.318 55.000 0.00 0.00 39.67 4.63
5294 7360 1.805945 GCTCGTTCATCGCCTCGTT 60.806 57.895 0.00 0.00 39.67 3.85
5310 7376 4.789802 GCCTCGTTTTCAGGTTCTCTTTTG 60.790 45.833 0.00 0.00 32.98 2.44
5313 7379 4.095782 TCGTTTTCAGGTTCTCTTTTGGTG 59.904 41.667 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 67 3.185797 ACGACAGCGAAGTATTTTTGGAC 59.814 43.478 0.00 0.00 41.64 4.02
78 98 2.977405 ATTTTTCTGCAGAGCACGAC 57.023 45.000 17.43 0.00 33.79 4.34
92 112 6.101005 TGGGGTTGGATTTCTCTTGAATTTTT 59.899 34.615 0.00 0.00 31.56 1.94
93 113 5.606329 TGGGGTTGGATTTCTCTTGAATTTT 59.394 36.000 0.00 0.00 31.56 1.82
94 114 5.154418 TGGGGTTGGATTTCTCTTGAATTT 58.846 37.500 0.00 0.00 31.56 1.82
95 115 4.750941 TGGGGTTGGATTTCTCTTGAATT 58.249 39.130 0.00 0.00 31.56 2.17
96 116 4.402616 TGGGGTTGGATTTCTCTTGAAT 57.597 40.909 0.00 0.00 31.56 2.57
97 117 3.893753 TGGGGTTGGATTTCTCTTGAA 57.106 42.857 0.00 0.00 0.00 2.69
98 118 3.496331 GTTGGGGTTGGATTTCTCTTGA 58.504 45.455 0.00 0.00 0.00 3.02
99 119 2.562738 GGTTGGGGTTGGATTTCTCTTG 59.437 50.000 0.00 0.00 0.00 3.02
100 120 2.178984 TGGTTGGGGTTGGATTTCTCTT 59.821 45.455 0.00 0.00 0.00 2.85
104 128 3.472652 GTTTTGGTTGGGGTTGGATTTC 58.527 45.455 0.00 0.00 0.00 2.17
132 156 1.007849 CGGTTTGGGTTTCGGCTTG 60.008 57.895 0.00 0.00 0.00 4.01
133 157 0.752376 TTCGGTTTGGGTTTCGGCTT 60.752 50.000 0.00 0.00 0.00 4.35
136 160 1.026584 AGTTTCGGTTTGGGTTTCGG 58.973 50.000 0.00 0.00 0.00 4.30
137 161 1.671845 TCAGTTTCGGTTTGGGTTTCG 59.328 47.619 0.00 0.00 0.00 3.46
162 187 2.047179 GCTGGTTCGACCCACTCC 60.047 66.667 0.00 0.00 37.50 3.85
164 189 2.743718 CTGCTGGTTCGACCCACT 59.256 61.111 0.00 0.00 37.50 4.00
215 240 3.580022 GGATGGGAATGGAAAATGGATCC 59.420 47.826 4.20 4.20 37.48 3.36
216 241 4.039609 GTGGATGGGAATGGAAAATGGATC 59.960 45.833 0.00 0.00 0.00 3.36
217 242 3.969312 GTGGATGGGAATGGAAAATGGAT 59.031 43.478 0.00 0.00 0.00 3.41
218 243 3.373830 GTGGATGGGAATGGAAAATGGA 58.626 45.455 0.00 0.00 0.00 3.41
219 244 2.101249 CGTGGATGGGAATGGAAAATGG 59.899 50.000 0.00 0.00 0.00 3.16
220 245 2.101249 CCGTGGATGGGAATGGAAAATG 59.899 50.000 0.00 0.00 0.00 2.32
221 246 2.387757 CCGTGGATGGGAATGGAAAAT 58.612 47.619 0.00 0.00 0.00 1.82
222 247 1.846007 CCGTGGATGGGAATGGAAAA 58.154 50.000 0.00 0.00 0.00 2.29
225 250 2.595095 GCCGTGGATGGGAATGGA 59.405 61.111 0.00 0.00 0.00 3.41
1072 1108 4.681978 GCAGTCCGGGCAGAACGT 62.682 66.667 9.71 0.00 0.00 3.99
1076 1112 2.454832 CTTCTTGCAGTCCGGGCAGA 62.455 60.000 9.71 0.00 43.05 4.26
1422 1459 1.230281 AATGGGGGCAGAGGAGGAA 60.230 57.895 0.00 0.00 0.00 3.36
1428 1476 1.152610 CATGGGAATGGGGGCAGAG 60.153 63.158 0.00 0.00 0.00 3.35
1433 1481 4.141876 ACGGCATGGGAATGGGGG 62.142 66.667 0.00 0.00 0.00 5.40
1444 1492 3.728845 GACCACACATATAAGACGGCAT 58.271 45.455 0.00 0.00 0.00 4.40
1445 1493 2.480587 CGACCACACATATAAGACGGCA 60.481 50.000 0.00 0.00 0.00 5.69
1462 1514 0.868406 GCAATTGGATCGGATCGACC 59.132 55.000 11.62 0.00 39.18 4.79
1463 1515 0.508641 CGCAATTGGATCGGATCGAC 59.491 55.000 11.62 0.04 39.18 4.20
1492 1544 2.367486 ACTAGTACCGAAGTCTGAGGC 58.633 52.381 0.00 0.00 0.00 4.70
1493 1545 4.768583 AGTACTAGTACCGAAGTCTGAGG 58.231 47.826 25.97 0.00 36.75 3.86
1500 1552 6.018343 GCTAACCAGTAGTACTAGTACCGAAG 60.018 46.154 25.97 15.23 36.75 3.79
1501 1553 5.817816 GCTAACCAGTAGTACTAGTACCGAA 59.182 44.000 25.97 11.85 36.75 4.30
1502 1554 5.104941 TGCTAACCAGTAGTACTAGTACCGA 60.105 44.000 25.97 14.02 36.75 4.69
1503 1555 5.118990 TGCTAACCAGTAGTACTAGTACCG 58.881 45.833 25.97 13.88 36.75 4.02
1504 1556 5.008514 GCTGCTAACCAGTAGTACTAGTACC 59.991 48.000 25.97 13.92 43.71 3.34
1508 1560 3.003482 CCGCTGCTAACCAGTAGTACTAG 59.997 52.174 1.87 0.00 43.71 2.57
1511 1563 1.202382 CCCGCTGCTAACCAGTAGTAC 60.202 57.143 0.00 0.00 43.71 2.73
1514 1566 0.753262 ATCCCGCTGCTAACCAGTAG 59.247 55.000 0.00 0.00 43.71 2.57
1519 1571 1.230324 GATTGATCCCGCTGCTAACC 58.770 55.000 0.00 0.00 0.00 2.85
1564 1616 7.756272 TCAATCAAATCAAATCAAATCAGGACG 59.244 33.333 0.00 0.00 0.00 4.79
1575 1627 4.053295 CCGGCCATCAATCAAATCAAATC 58.947 43.478 2.24 0.00 0.00 2.17
1583 1635 3.117701 TCCTAAATCCGGCCATCAATCAA 60.118 43.478 2.24 0.00 0.00 2.57
1584 1636 2.441375 TCCTAAATCCGGCCATCAATCA 59.559 45.455 2.24 0.00 0.00 2.57
1585 1637 3.140325 TCCTAAATCCGGCCATCAATC 57.860 47.619 2.24 0.00 0.00 2.67
1586 1638 3.593442 TTCCTAAATCCGGCCATCAAT 57.407 42.857 2.24 0.00 0.00 2.57
1638 1692 0.661020 AAACAAAACCGACTGAGGCG 59.339 50.000 0.00 0.00 33.69 5.52
1640 1694 4.124238 TCTACAAACAAAACCGACTGAGG 58.876 43.478 0.00 0.00 37.30 3.86
1644 1698 4.212636 CCGAATCTACAAACAAAACCGACT 59.787 41.667 0.00 0.00 0.00 4.18
1681 1735 2.414658 TAACAAACCCCCTCCACGGC 62.415 60.000 0.00 0.00 0.00 5.68
1715 1770 3.571401 CGGTACCCATACTTACTACAGGG 59.429 52.174 6.25 0.00 42.07 4.45
1735 1794 2.037251 CACCACCTACCCATAAGATCGG 59.963 54.545 0.00 0.00 0.00 4.18
1780 1839 4.405756 TTCTTGAGTAGAACCTCCCTCT 57.594 45.455 0.00 0.00 37.96 3.69
1782 1841 7.136203 AGATATTTCTTGAGTAGAACCTCCCT 58.864 38.462 0.00 0.00 42.50 4.20
1812 1871 6.252233 TGAGATCCATTGTATCAACCCAAAA 58.748 36.000 0.00 0.00 0.00 2.44
1876 1935 8.472413 GTCTGTACCAAACCTATTATACTCACA 58.528 37.037 0.00 0.00 0.00 3.58
1884 1943 7.247456 TGACATGTCTGTACCAAACCTATTA 57.753 36.000 25.55 0.00 35.14 0.98
1919 1987 2.866762 GGTAACACCATCATTCGAGAGC 59.133 50.000 0.00 0.00 38.42 4.09
1936 2004 6.834451 TCAAGAAACCAGGTGTTAAATGGTAA 59.166 34.615 0.00 0.00 46.56 2.85
1952 2055 9.403110 CTAATATTATGCATGCTTCAAGAAACC 57.597 33.333 20.33 0.00 0.00 3.27
1996 2262 1.068748 CCAGCTTGCTGTTGCTACTTG 60.069 52.381 19.49 0.00 37.81 3.16
2043 2309 2.947652 CCTCGGCAGTTCATCAATCAAT 59.052 45.455 0.00 0.00 0.00 2.57
2044 2310 2.027285 TCCTCGGCAGTTCATCAATCAA 60.027 45.455 0.00 0.00 0.00 2.57
2045 2311 1.554617 TCCTCGGCAGTTCATCAATCA 59.445 47.619 0.00 0.00 0.00 2.57
2046 2312 2.315925 TCCTCGGCAGTTCATCAATC 57.684 50.000 0.00 0.00 0.00 2.67
2061 2327 3.441922 GCCTTGTCAAGAAAAGGATCCTC 59.558 47.826 20.69 2.58 44.93 3.71
2158 2425 7.011016 CCAAATGTTAGAAACAAAAAGACCCAC 59.989 37.037 0.00 0.00 45.86 4.61
2175 2519 9.868277 GAATGTATGGTCAAAATCCAAATGTTA 57.132 29.630 0.00 0.00 38.52 2.41
2211 2555 1.455383 CCACAAGACCCAACCTGCAC 61.455 60.000 0.00 0.00 0.00 4.57
2273 2617 2.037902 TCGGTTTCCAGCTGTCAACATA 59.962 45.455 20.91 9.75 0.00 2.29
2274 2618 1.202758 TCGGTTTCCAGCTGTCAACAT 60.203 47.619 20.91 0.00 0.00 2.71
2275 2619 0.179234 TCGGTTTCCAGCTGTCAACA 59.821 50.000 20.91 4.95 0.00 3.33
2329 2673 9.745880 AGATGCATTTAATTCATTCATCAGTTC 57.254 29.630 0.00 0.00 33.34 3.01
2341 2685 8.571336 ACATACCAAGCTAGATGCATTTAATTC 58.429 33.333 0.00 0.00 45.94 2.17
2354 2698 6.988580 TCTGAATTGATGACATACCAAGCTAG 59.011 38.462 0.00 0.00 0.00 3.42
2378 2722 3.576232 AGGACAACCCTGGGTGTC 58.424 61.111 26.83 26.83 45.61 3.67
2415 2759 5.160699 TCATTCAATGCGAGCATAAAGAC 57.839 39.130 11.25 0.00 35.31 3.01
2571 2956 2.074547 ACACTACGAAACATGGACCG 57.925 50.000 0.00 0.00 0.00 4.79
2592 2977 8.865590 TTTTCTTACAATAAAACAGACCTTGC 57.134 30.769 0.00 0.00 0.00 4.01
2675 3113 4.022589 CAGCAATGAACCTTGACAATGAGT 60.023 41.667 0.00 0.00 0.00 3.41
2706 3152 6.620877 AGGGAAAATCTTGAAAATAACCCC 57.379 37.500 0.00 0.00 34.77 4.95
2716 3162 9.832445 GATGTTACTGTATAGGGAAAATCTTGA 57.168 33.333 0.00 0.00 0.00 3.02
2722 3168 8.192774 CAGTACGATGTTACTGTATAGGGAAAA 58.807 37.037 0.00 0.00 38.96 2.29
2740 3186 3.003275 CAGTTGCAACAAACCAGTACGAT 59.997 43.478 30.11 2.79 0.00 3.73
2742 3188 2.096819 ACAGTTGCAACAAACCAGTACG 59.903 45.455 30.11 8.30 0.00 3.67
2811 3257 6.015940 CCACCTTCTTATAGATTTCATTGGCC 60.016 42.308 0.00 0.00 0.00 5.36
2949 3395 9.683069 AATGTCTACAAAACTAGAAATTTGCTG 57.317 29.630 15.39 10.76 39.55 4.41
2956 3402 9.498176 GGGTTCTAATGTCTACAAAACTAGAAA 57.502 33.333 0.00 0.00 0.00 2.52
2962 3408 5.697633 TGACGGGTTCTAATGTCTACAAAAC 59.302 40.000 0.00 0.00 32.64 2.43
2968 3414 5.681437 GCATTCTGACGGGTTCTAATGTCTA 60.681 44.000 0.00 0.00 33.85 2.59
3001 3447 5.797051 AGCAAATACAACAAAGAATGGCAT 58.203 33.333 0.00 0.00 0.00 4.40
3115 3561 3.245514 CCATCTCCATAGATTGGCCCATT 60.246 47.826 0.00 0.00 46.01 3.16
3579 4140 5.649782 AGACAACATAAGGAGCAAAATGG 57.350 39.130 0.00 0.00 0.00 3.16
3649 4352 2.225091 TGGAACCACCTCAAGCATGAAT 60.225 45.455 0.00 0.00 39.86 2.57
3843 4548 3.191162 TGTGCACTAGGAAATTGACATGC 59.809 43.478 19.41 0.00 0.00 4.06
3935 4640 2.810274 CATATAAATGACAGCAGCCGCT 59.190 45.455 0.00 0.00 42.01 5.52
4002 4707 0.322546 AAATGACGGGAAGGGTCAGC 60.323 55.000 0.99 0.00 46.55 4.26
4019 4724 4.134563 GACAGGCACAAGGAGAAAGTAAA 58.865 43.478 0.00 0.00 0.00 2.01
4036 4741 2.126307 CTCGGCGACAGTGACAGG 60.126 66.667 4.99 0.00 0.00 4.00
4057 4762 3.119849 GCAAGCATCCGAGTGTTAAATGT 60.120 43.478 0.00 0.00 0.00 2.71
4068 4775 1.580942 GCAAAGTGCAAGCATCCGA 59.419 52.632 0.00 0.00 44.26 4.55
4069 4776 4.157817 GCAAAGTGCAAGCATCCG 57.842 55.556 0.00 0.00 44.26 4.18
4080 4787 3.549794 GCCAAGGAGATATCTGCAAAGT 58.450 45.455 24.20 2.60 36.72 2.66
4081 4788 2.883386 GGCCAAGGAGATATCTGCAAAG 59.117 50.000 24.20 13.39 36.72 2.77
4232 4939 2.165234 GAGAAAGGAAGAAATGGCTGCC 59.835 50.000 12.87 12.87 33.35 4.85
4318 5026 2.743928 GGCCTGGTGAAGCACTCG 60.744 66.667 0.00 0.00 34.40 4.18
4521 5241 3.331889 AGAACCCCACAGAATGATCACTT 59.668 43.478 0.00 0.00 39.69 3.16
4522 5242 2.915604 AGAACCCCACAGAATGATCACT 59.084 45.455 0.00 0.00 39.69 3.41
4533 5253 3.153919 GACATTTTGCTAGAACCCCACA 58.846 45.455 0.00 0.00 0.00 4.17
4535 5255 2.109128 TGGACATTTTGCTAGAACCCCA 59.891 45.455 0.00 0.00 0.00 4.96
4582 5309 5.916318 TCGGTCGTGTATAACCCAAATATT 58.084 37.500 0.00 0.00 31.49 1.28
4611 5338 5.745227 CCAGCTCAGGGAGTTAGAAAATTA 58.255 41.667 0.00 0.00 31.39 1.40
4612 5339 4.593956 CCAGCTCAGGGAGTTAGAAAATT 58.406 43.478 0.00 0.00 31.39 1.82
4648 5375 3.382803 ATCAGCTCGGTGCCTCTGC 62.383 63.158 0.00 0.00 44.23 4.26
4654 5381 1.329906 CATCTTTGATCAGCTCGGTGC 59.670 52.381 0.00 0.00 43.29 5.01
4658 5385 4.686972 TCTTACCATCTTTGATCAGCTCG 58.313 43.478 0.00 0.00 0.00 5.03
4663 5390 8.328758 ACCATAGTTTCTTACCATCTTTGATCA 58.671 33.333 0.00 0.00 0.00 2.92
4742 5471 2.178890 GGCAATGCCGAGAGAGCAG 61.179 63.158 9.14 0.00 44.90 4.24
4755 5484 1.187567 AAAGCTTTCCGGCAGGCAAT 61.188 50.000 11.32 0.00 37.47 3.56
4778 5507 2.275380 GGTCACCGCCAAAGCCATT 61.275 57.895 0.00 0.00 34.57 3.16
4806 5535 5.299279 GTCTGATCTCAAACAAGGGTTTCAA 59.701 40.000 0.00 0.00 45.18 2.69
4810 5539 4.437682 TGTCTGATCTCAAACAAGGGTT 57.562 40.909 0.00 0.00 39.43 4.11
4826 6119 0.320771 ACGCTTGGGCTACTTGTCTG 60.321 55.000 0.00 0.00 36.09 3.51
4828 6121 1.912371 GCACGCTTGGGCTACTTGTC 61.912 60.000 0.00 0.00 36.09 3.18
4837 6130 4.034258 CTGCACTGCACGCTTGGG 62.034 66.667 0.00 0.00 33.79 4.12
4850 6144 6.547141 AGATGCTTTATAATTTACCAGCTGCA 59.453 34.615 8.66 0.00 0.00 4.41
4851 6145 6.974965 AGATGCTTTATAATTTACCAGCTGC 58.025 36.000 8.66 0.00 0.00 5.25
4869 6163 8.489489 TCTCCAATAGTTTCTTGATTAGATGCT 58.511 33.333 0.00 0.00 31.54 3.79
4939 6246 6.758886 CGGAGAAAACAGAGCAAGTAGATATT 59.241 38.462 0.00 0.00 0.00 1.28
4948 6255 1.270839 CCCTCGGAGAAAACAGAGCAA 60.271 52.381 6.58 0.00 34.09 3.91
4949 6256 0.321671 CCCTCGGAGAAAACAGAGCA 59.678 55.000 6.58 0.00 34.09 4.26
4950 6257 1.021920 GCCCTCGGAGAAAACAGAGC 61.022 60.000 6.58 0.00 34.09 4.09
4951 6258 0.321671 TGCCCTCGGAGAAAACAGAG 59.678 55.000 6.58 0.00 34.09 3.35
4971 6278 2.893398 CGACGGGGGAAGAGGAAG 59.107 66.667 0.00 0.00 0.00 3.46
4990 6297 0.747283 CATGCAGTCCAGAGGAAGCC 60.747 60.000 8.63 0.00 35.16 4.35
5001 6308 0.107459 GAACCTCTCCCCATGCAGTC 60.107 60.000 0.00 0.00 0.00 3.51
5020 6327 1.376424 ATCACCGCCAGAGTGCAAG 60.376 57.895 0.00 0.00 35.14 4.01
5024 6331 1.376424 AAGCATCACCGCCAGAGTG 60.376 57.895 0.00 0.00 36.54 3.51
5029 6336 1.739929 CGTACAAGCATCACCGCCA 60.740 57.895 0.00 0.00 0.00 5.69
5039 6365 3.192922 AATCGCCGGCGTACAAGC 61.193 61.111 44.16 7.41 40.74 4.01
5090 6416 1.471119 ACTTACTCCAGAATCGCCGA 58.529 50.000 0.00 0.00 0.00 5.54
5104 6430 4.588805 CGGAATTTCAACCGGTACTTAC 57.411 45.455 8.00 0.00 44.59 2.34
5119 6448 1.219935 GTCCAGTACCGCCGGAATT 59.780 57.895 11.71 0.00 0.00 2.17
5142 6471 2.047274 AGTCCATGTTCGCCGGTG 60.047 61.111 9.28 9.28 0.00 4.94
5170 6499 2.706890 GCCGGTATACCACCCATATTG 58.293 52.381 21.76 1.95 45.52 1.90
5199 6528 1.402456 CCAGTATCGCCGGTATACAGC 60.402 57.143 22.95 6.15 33.15 4.40
5276 7342 1.352156 AAACGAGGCGATGAACGAGC 61.352 55.000 0.00 0.00 45.77 5.03
5287 7353 2.171341 AGAGAACCTGAAAACGAGGC 57.829 50.000 0.00 0.00 33.39 4.70
5292 7358 4.159693 ACCACCAAAAGAGAACCTGAAAAC 59.840 41.667 0.00 0.00 0.00 2.43
5294 7360 3.699038 CACCACCAAAAGAGAACCTGAAA 59.301 43.478 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.