Multiple sequence alignment - TraesCS5A01G322900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G322900 chr5A 100.000 3664 0 0 1537 5200 535218638 535214975 0.000000e+00 6767.0
1 TraesCS5A01G322900 chr5A 100.000 1092 0 0 1 1092 535220174 535219083 0.000000e+00 2017.0
2 TraesCS5A01G322900 chr5A 90.291 206 19 1 1842 2047 535218290 535218086 8.580000e-68 268.0
3 TraesCS5A01G322900 chr5A 90.291 206 19 1 1885 2089 535218333 535218128 8.580000e-68 268.0
4 TraesCS5A01G322900 chr5D 93.341 3304 143 30 1899 5149 421622588 421619309 0.000000e+00 4811.0
5 TraesCS5A01G322900 chr5D 94.325 511 23 2 1537 2047 421622902 421622398 0.000000e+00 778.0
6 TraesCS5A01G322900 chr5D 94.796 269 9 1 770 1038 421623418 421623155 1.040000e-111 414.0
7 TraesCS5A01G322900 chr5D 92.617 149 11 0 1941 2089 421622588 421622440 1.130000e-51 215.0
8 TraesCS5A01G322900 chr5D 91.000 100 9 0 5090 5189 421619306 421619207 9.080000e-28 135.0
9 TraesCS5A01G322900 chr5D 91.071 56 3 2 5146 5200 338564246 338564192 2.010000e-09 75.0
10 TraesCS5A01G322900 chr5D 89.286 56 4 2 5146 5200 193856043 193855989 9.340000e-08 69.4
11 TraesCS5A01G322900 chr5B 94.916 2557 98 12 1885 4423 507939978 507937436 0.000000e+00 3973.0
12 TraesCS5A01G322900 chr5B 84.932 730 85 18 387 1092 507941005 507940277 0.000000e+00 715.0
13 TraesCS5A01G322900 chr5B 90.421 522 32 5 1537 2052 507940277 507939768 0.000000e+00 671.0
14 TraesCS5A01G322900 chr5B 84.226 336 45 4 4484 4814 507937438 507937106 2.340000e-83 320.0
15 TraesCS5A01G322900 chr5B 80.712 337 37 17 236 547 507941640 507941307 2.420000e-58 237.0
16 TraesCS5A01G322900 chr5B 88.304 171 19 1 1842 2012 507939935 507939766 2.450000e-48 204.0
17 TraesCS5A01G322900 chr4D 90.187 428 31 7 2738 3154 195846824 195847251 9.840000e-152 547.0
18 TraesCS5A01G322900 chr3D 90.514 253 24 0 2694 2946 421026870 421027122 8.340000e-88 335.0
19 TraesCS5A01G322900 chr1D 90.119 253 25 0 2694 2946 412823803 412823551 3.880000e-86 329.0
20 TraesCS5A01G322900 chr1D 89.723 253 26 0 2694 2946 412907341 412907089 1.810000e-84 324.0
21 TraesCS5A01G322900 chr6D 89.723 253 26 0 2694 2946 321601670 321601922 1.810000e-84 324.0
22 TraesCS5A01G322900 chr6D 91.071 56 3 2 5146 5200 310281245 310281191 2.010000e-09 75.0
23 TraesCS5A01G322900 chr2A 89.723 253 25 1 2694 2946 655839546 655839295 6.500000e-84 322.0
24 TraesCS5A01G322900 chr4A 89.328 253 26 1 2694 2946 633088914 633089165 3.020000e-82 316.0
25 TraesCS5A01G322900 chr2D 95.139 144 5 1 1 142 560849702 560849559 5.240000e-55 226.0
26 TraesCS5A01G322900 chrUn 95.683 139 6 0 1 139 69711629 69711767 1.880000e-54 224.0
27 TraesCS5A01G322900 chr7A 93.388 121 8 0 18 138 619737637 619737757 4.140000e-41 180.0
28 TraesCS5A01G322900 chr7A 93.388 121 8 0 18 138 619753692 619753812 4.140000e-41 180.0
29 TraesCS5A01G322900 chr6A 75.410 305 45 19 4798 5087 446309379 446309668 2.540000e-23 121.0
30 TraesCS5A01G322900 chr1B 92.857 56 2 2 5146 5200 308481666 308481720 4.320000e-11 80.5
31 TraesCS5A01G322900 chr1B 89.286 56 4 2 5146 5200 27483085 27483031 9.340000e-08 69.4
32 TraesCS5A01G322900 chr7B 91.071 56 3 2 5146 5200 235346234 235346288 2.010000e-09 75.0
33 TraesCS5A01G322900 chr3A 91.071 56 3 2 5146 5200 439009011 439009065 2.010000e-09 75.0
34 TraesCS5A01G322900 chr3A 89.655 58 6 0 5143 5200 737464637 737464694 2.010000e-09 75.0
35 TraesCS5A01G322900 chr7D 97.222 36 1 0 160 195 183318974 183318939 1.560000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G322900 chr5A 535214975 535220174 5199 True 2330.0 6767 95.145500 1 5200 4 chr5A.!!$R1 5199
1 TraesCS5A01G322900 chr5D 421619207 421623418 4211 True 1270.6 4811 93.215800 770 5189 5 chr5D.!!$R3 4419
2 TraesCS5A01G322900 chr5B 507937106 507941640 4534 True 1020.0 3973 87.251833 236 4814 6 chr5B.!!$R1 4578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.032912 TGCATGGTACTCCCTCCGTA 60.033 55.000 0.00 0.0 0.00 4.02 F
738 1225 0.108041 GGAAGGAACCGGATGCGTAA 60.108 55.000 9.46 0.0 0.00 3.18 F
1870 2604 0.545548 AGGAGGTGGACCAGAAGGAC 60.546 60.000 0.00 0.0 38.89 3.85 F
2424 3158 1.301953 TCTGCGTGCTTCTGTGCAT 60.302 52.632 0.00 0.0 45.23 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1946 2680 1.592939 GCGGCTCCGAATCCTTCTC 60.593 63.158 13.11 0.00 42.83 2.87 R
2732 3466 2.987413 TTTAGCCACACTTCAATGCG 57.013 45.000 0.00 0.00 0.00 4.73 R
3025 3760 1.946081 CAAAACAATGTTGGCCCAACC 59.054 47.619 23.38 6.63 42.96 3.77 R
4200 4967 0.107654 AGGAGCTACACCGCATTTCC 60.108 55.000 0.00 0.00 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.843632 TGCACACAACAGAAATCGC 57.156 47.368 0.00 0.00 0.00 4.58
19 20 1.020437 TGCACACAACAGAAATCGCA 58.980 45.000 0.00 0.00 0.00 5.10
20 21 1.268488 TGCACACAACAGAAATCGCAC 60.268 47.619 0.00 0.00 0.00 5.34
21 22 1.662360 CACACAACAGAAATCGCACG 58.338 50.000 0.00 0.00 0.00 5.34
22 23 1.260297 CACACAACAGAAATCGCACGA 59.740 47.619 0.00 0.00 0.00 4.35
23 24 2.096268 CACACAACAGAAATCGCACGAT 60.096 45.455 0.00 0.00 36.23 3.73
24 25 2.157668 ACACAACAGAAATCGCACGATC 59.842 45.455 5.94 0.00 33.08 3.69
25 26 1.732259 ACAACAGAAATCGCACGATCC 59.268 47.619 5.94 2.01 33.08 3.36
26 27 1.731709 CAACAGAAATCGCACGATCCA 59.268 47.619 5.94 0.00 33.08 3.41
27 28 1.359848 ACAGAAATCGCACGATCCAC 58.640 50.000 5.94 1.62 33.08 4.02
29 30 1.012234 GAAATCGCACGATCCACGC 60.012 57.895 5.94 0.00 46.94 5.34
30 31 1.692148 GAAATCGCACGATCCACGCA 61.692 55.000 5.94 0.00 46.94 5.24
31 32 1.966493 AAATCGCACGATCCACGCAC 61.966 55.000 5.94 0.00 46.94 5.34
34 35 2.885644 GCACGATCCACGCACGAT 60.886 61.111 0.00 0.00 46.94 3.73
35 36 2.997869 CACGATCCACGCACGATG 59.002 61.111 0.00 0.00 46.94 3.84
36 37 2.885644 ACGATCCACGCACGATGC 60.886 61.111 0.00 0.00 46.94 3.91
37 38 2.583319 CGATCCACGCACGATGCT 60.583 61.111 0.00 0.00 42.25 3.79
38 39 2.863853 CGATCCACGCACGATGCTG 61.864 63.158 0.00 5.78 42.25 4.41
39 40 1.519234 GATCCACGCACGATGCTGA 60.519 57.895 0.00 3.45 42.25 4.26
40 41 1.079197 ATCCACGCACGATGCTGAA 60.079 52.632 0.00 0.00 42.25 3.02
41 42 0.673333 ATCCACGCACGATGCTGAAA 60.673 50.000 0.00 0.70 42.25 2.69
42 43 0.673333 TCCACGCACGATGCTGAAAT 60.673 50.000 0.00 0.00 42.25 2.17
43 44 0.247814 CCACGCACGATGCTGAAATC 60.248 55.000 0.00 0.00 42.25 2.17
44 45 0.723414 CACGCACGATGCTGAAATCT 59.277 50.000 0.00 0.00 42.25 2.40
45 46 1.926510 CACGCACGATGCTGAAATCTA 59.073 47.619 0.00 0.00 42.25 1.98
46 47 2.034254 CACGCACGATGCTGAAATCTAG 60.034 50.000 0.00 0.00 42.25 2.43
47 48 1.070975 CGCACGATGCTGAAATCTAGC 60.071 52.381 8.07 0.00 42.25 3.42
48 49 1.262683 GCACGATGCTGAAATCTAGCC 59.737 52.381 0.00 0.00 40.96 3.93
49 50 1.524355 CACGATGCTGAAATCTAGCCG 59.476 52.381 0.00 0.00 40.42 5.52
50 51 0.510359 CGATGCTGAAATCTAGCCGC 59.490 55.000 0.00 0.00 40.42 6.53
51 52 1.586422 GATGCTGAAATCTAGCCGCA 58.414 50.000 0.00 0.00 40.42 5.69
52 53 1.262683 GATGCTGAAATCTAGCCGCAC 59.737 52.381 0.00 0.00 40.42 5.34
53 54 0.036483 TGCTGAAATCTAGCCGCACA 60.036 50.000 0.00 0.00 40.42 4.57
54 55 1.303309 GCTGAAATCTAGCCGCACAT 58.697 50.000 0.00 0.00 35.15 3.21
55 56 1.003116 GCTGAAATCTAGCCGCACATG 60.003 52.381 0.00 0.00 35.15 3.21
56 57 1.003116 CTGAAATCTAGCCGCACATGC 60.003 52.381 0.00 0.00 37.78 4.06
57 58 1.016627 GAAATCTAGCCGCACATGCA 58.983 50.000 4.49 0.00 42.21 3.96
58 59 1.605710 GAAATCTAGCCGCACATGCAT 59.394 47.619 4.49 0.00 42.21 3.96
59 60 2.549064 AATCTAGCCGCACATGCATA 57.451 45.000 0.00 0.00 42.21 3.14
60 61 2.775911 ATCTAGCCGCACATGCATAT 57.224 45.000 0.00 0.00 42.21 1.78
61 62 1.799544 TCTAGCCGCACATGCATATG 58.200 50.000 0.00 0.00 42.21 1.78
62 63 1.344114 TCTAGCCGCACATGCATATGA 59.656 47.619 9.69 0.00 42.21 2.15
63 64 2.145536 CTAGCCGCACATGCATATGAA 58.854 47.619 9.69 0.00 42.21 2.57
64 65 1.612676 AGCCGCACATGCATATGAAT 58.387 45.000 9.69 0.00 42.21 2.57
65 66 1.268625 AGCCGCACATGCATATGAATG 59.731 47.619 20.47 20.47 42.21 2.67
66 67 1.267533 GCCGCACATGCATATGAATGA 59.732 47.619 27.49 0.00 42.21 2.57
67 68 2.287728 GCCGCACATGCATATGAATGAA 60.288 45.455 27.49 0.00 42.21 2.57
68 69 3.796165 GCCGCACATGCATATGAATGAAA 60.796 43.478 27.49 0.00 42.21 2.69
69 70 4.361420 CCGCACATGCATATGAATGAAAA 58.639 39.130 27.49 0.00 42.21 2.29
70 71 4.804665 CCGCACATGCATATGAATGAAAAA 59.195 37.500 27.49 0.00 42.21 1.94
71 72 5.051307 CCGCACATGCATATGAATGAAAAAG 60.051 40.000 27.49 13.95 42.21 2.27
72 73 5.051307 CGCACATGCATATGAATGAAAAAGG 60.051 40.000 27.49 11.56 42.21 3.11
73 74 5.277154 GCACATGCATATGAATGAAAAAGGC 60.277 40.000 27.49 16.28 41.59 4.35
74 75 5.813157 CACATGCATATGAATGAAAAAGGCA 59.187 36.000 27.49 4.63 37.73 4.75
75 76 6.481976 CACATGCATATGAATGAAAAAGGCAT 59.518 34.615 27.49 6.78 39.79 4.40
76 77 6.704493 ACATGCATATGAATGAAAAAGGCATC 59.296 34.615 27.49 0.00 37.35 3.91
77 78 5.283294 TGCATATGAATGAAAAAGGCATCG 58.717 37.500 6.97 0.00 34.84 3.84
78 79 4.682860 GCATATGAATGAAAAAGGCATCGG 59.317 41.667 6.97 0.00 34.84 4.18
79 80 2.652941 TGAATGAAAAAGGCATCGGC 57.347 45.000 0.00 0.00 40.13 5.54
89 90 3.425422 GCATCGGCCACTGGATTC 58.575 61.111 2.24 0.00 0.00 2.52
90 91 1.451927 GCATCGGCCACTGGATTCA 60.452 57.895 2.24 0.00 0.00 2.57
91 92 1.718757 GCATCGGCCACTGGATTCAC 61.719 60.000 2.24 0.00 0.00 3.18
92 93 1.097547 CATCGGCCACTGGATTCACC 61.098 60.000 2.24 0.00 39.54 4.02
93 94 2.270874 ATCGGCCACTGGATTCACCC 62.271 60.000 2.24 0.00 38.00 4.61
94 95 2.438434 GGCCACTGGATTCACCCG 60.438 66.667 0.00 0.00 38.00 5.28
95 96 2.351276 GCCACTGGATTCACCCGT 59.649 61.111 0.00 0.00 36.55 5.28
96 97 1.745489 GCCACTGGATTCACCCGTC 60.745 63.158 0.00 0.00 33.90 4.79
97 98 1.447838 CCACTGGATTCACCCGTCG 60.448 63.158 0.00 0.00 33.90 5.12
98 99 1.292223 CACTGGATTCACCCGTCGT 59.708 57.895 0.00 0.00 33.90 4.34
99 100 1.014044 CACTGGATTCACCCGTCGTG 61.014 60.000 0.00 0.00 44.50 4.35
100 101 2.047655 TGGATTCACCCGTCGTGC 60.048 61.111 0.00 0.00 42.69 5.34
101 102 2.047655 GGATTCACCCGTCGTGCA 60.048 61.111 0.00 0.00 42.69 4.57
102 103 1.669760 GGATTCACCCGTCGTGCAA 60.670 57.895 0.00 0.00 42.69 4.08
103 104 1.231958 GGATTCACCCGTCGTGCAAA 61.232 55.000 0.00 0.00 42.69 3.68
104 105 0.165944 GATTCACCCGTCGTGCAAAG 59.834 55.000 0.00 0.00 42.69 2.77
105 106 1.234615 ATTCACCCGTCGTGCAAAGG 61.235 55.000 0.00 0.00 42.69 3.11
106 107 2.590575 CACCCGTCGTGCAAAGGT 60.591 61.111 0.00 0.00 35.18 3.50
107 108 2.280592 ACCCGTCGTGCAAAGGTC 60.281 61.111 0.00 0.00 0.00 3.85
108 109 3.411351 CCCGTCGTGCAAAGGTCG 61.411 66.667 0.00 0.00 0.00 4.79
109 110 2.660552 CCGTCGTGCAAAGGTCGT 60.661 61.111 0.00 0.00 0.00 4.34
110 111 2.544359 CGTCGTGCAAAGGTCGTG 59.456 61.111 0.00 0.00 0.00 4.35
111 112 2.248431 GTCGTGCAAAGGTCGTGC 59.752 61.111 0.00 0.00 42.55 5.34
116 117 2.912986 TGCAAAGGTCGTGCAGTAG 58.087 52.632 0.00 0.00 46.76 2.57
117 118 0.105964 TGCAAAGGTCGTGCAGTAGT 59.894 50.000 0.00 0.00 46.76 2.73
118 119 1.341852 TGCAAAGGTCGTGCAGTAGTA 59.658 47.619 0.00 0.00 46.76 1.82
119 120 2.028476 TGCAAAGGTCGTGCAGTAGTAT 60.028 45.455 0.00 0.00 46.76 2.12
120 121 2.603560 GCAAAGGTCGTGCAGTAGTATC 59.396 50.000 0.00 0.00 41.80 2.24
121 122 2.846039 AAGGTCGTGCAGTAGTATCG 57.154 50.000 0.00 0.00 0.00 2.92
122 123 1.747709 AGGTCGTGCAGTAGTATCGT 58.252 50.000 0.00 0.00 0.00 3.73
123 124 1.400846 AGGTCGTGCAGTAGTATCGTG 59.599 52.381 0.00 0.00 0.00 4.35
124 125 1.189403 GTCGTGCAGTAGTATCGTGC 58.811 55.000 0.00 0.00 37.73 5.34
125 126 0.247934 TCGTGCAGTAGTATCGTGCG 60.248 55.000 0.00 0.00 40.23 5.34
126 127 0.522705 CGTGCAGTAGTATCGTGCGT 60.523 55.000 0.00 0.00 40.23 5.24
127 128 0.914551 GTGCAGTAGTATCGTGCGTG 59.085 55.000 0.00 0.00 40.23 5.34
128 129 0.179148 TGCAGTAGTATCGTGCGTGG 60.179 55.000 0.00 0.00 40.23 4.94
129 130 0.099968 GCAGTAGTATCGTGCGTGGA 59.900 55.000 0.00 0.00 0.00 4.02
130 131 1.860399 GCAGTAGTATCGTGCGTGGAG 60.860 57.143 0.00 0.00 0.00 3.86
131 132 1.400846 CAGTAGTATCGTGCGTGGAGT 59.599 52.381 0.00 0.00 0.00 3.85
132 133 2.610833 CAGTAGTATCGTGCGTGGAGTA 59.389 50.000 0.00 0.00 0.00 2.59
133 134 2.871022 AGTAGTATCGTGCGTGGAGTAG 59.129 50.000 0.00 0.00 0.00 2.57
134 135 1.747709 AGTATCGTGCGTGGAGTAGT 58.252 50.000 0.00 0.00 0.00 2.73
135 136 2.089980 AGTATCGTGCGTGGAGTAGTT 58.910 47.619 0.00 0.00 0.00 2.24
136 137 2.097142 AGTATCGTGCGTGGAGTAGTTC 59.903 50.000 0.00 0.00 0.00 3.01
137 138 0.172803 ATCGTGCGTGGAGTAGTTCC 59.827 55.000 0.00 0.00 46.98 3.62
148 149 3.391049 GGAGTAGTTCCGATTGCATACC 58.609 50.000 0.00 0.00 35.91 2.73
149 150 3.181469 GGAGTAGTTCCGATTGCATACCA 60.181 47.826 0.00 0.00 35.91 3.25
150 151 4.503296 GGAGTAGTTCCGATTGCATACCAT 60.503 45.833 0.00 0.00 35.91 3.55
151 152 4.380531 AGTAGTTCCGATTGCATACCATG 58.619 43.478 0.00 0.00 0.00 3.66
152 153 2.575532 AGTTCCGATTGCATACCATGG 58.424 47.619 11.19 11.19 0.00 3.66
153 154 2.092429 AGTTCCGATTGCATACCATGGT 60.092 45.455 23.55 23.55 0.00 3.55
154 155 2.254546 TCCGATTGCATACCATGGTC 57.745 50.000 23.76 8.03 0.00 4.02
155 156 1.768275 TCCGATTGCATACCATGGTCT 59.232 47.619 23.76 9.28 0.00 3.85
156 157 2.146342 CCGATTGCATACCATGGTCTC 58.854 52.381 23.76 12.16 0.00 3.36
157 158 2.485302 CCGATTGCATACCATGGTCTCA 60.485 50.000 23.76 14.76 0.00 3.27
158 159 2.804527 CGATTGCATACCATGGTCTCAG 59.195 50.000 23.76 10.92 0.00 3.35
159 160 3.493176 CGATTGCATACCATGGTCTCAGA 60.493 47.826 23.76 3.07 0.00 3.27
160 161 4.649692 GATTGCATACCATGGTCTCAGAT 58.350 43.478 23.76 11.52 0.00 2.90
161 162 4.508551 TTGCATACCATGGTCTCAGATT 57.491 40.909 23.76 0.00 0.00 2.40
162 163 4.508551 TGCATACCATGGTCTCAGATTT 57.491 40.909 23.76 0.00 0.00 2.17
163 164 4.858850 TGCATACCATGGTCTCAGATTTT 58.141 39.130 23.76 0.00 0.00 1.82
164 165 4.641541 TGCATACCATGGTCTCAGATTTTG 59.358 41.667 23.76 7.39 0.00 2.44
165 166 4.498682 GCATACCATGGTCTCAGATTTTGC 60.499 45.833 23.76 13.08 0.00 3.68
166 167 3.159213 ACCATGGTCTCAGATTTTGCA 57.841 42.857 13.00 0.00 0.00 4.08
167 168 3.705051 ACCATGGTCTCAGATTTTGCAT 58.295 40.909 13.00 0.00 0.00 3.96
168 169 3.446161 ACCATGGTCTCAGATTTTGCATG 59.554 43.478 13.00 0.00 0.00 4.06
169 170 3.181479 CCATGGTCTCAGATTTTGCATGG 60.181 47.826 2.57 0.00 37.36 3.66
170 171 3.159213 TGGTCTCAGATTTTGCATGGT 57.841 42.857 0.00 0.00 0.00 3.55
171 172 4.299586 TGGTCTCAGATTTTGCATGGTA 57.700 40.909 0.00 0.00 0.00 3.25
172 173 4.009675 TGGTCTCAGATTTTGCATGGTAC 58.990 43.478 0.00 0.00 0.00 3.34
173 174 4.263462 TGGTCTCAGATTTTGCATGGTACT 60.263 41.667 0.00 0.00 0.00 2.73
174 175 4.333926 GGTCTCAGATTTTGCATGGTACTC 59.666 45.833 0.00 0.00 0.00 2.59
175 176 4.333926 GTCTCAGATTTTGCATGGTACTCC 59.666 45.833 0.00 0.00 0.00 3.85
176 177 3.620488 TCAGATTTTGCATGGTACTCCC 58.380 45.455 0.00 0.00 0.00 4.30
177 178 3.266772 TCAGATTTTGCATGGTACTCCCT 59.733 43.478 0.00 0.00 0.00 4.20
178 179 3.629398 CAGATTTTGCATGGTACTCCCTC 59.371 47.826 0.00 0.00 0.00 4.30
179 180 2.507407 TTTTGCATGGTACTCCCTCC 57.493 50.000 0.00 0.00 0.00 4.30
180 181 0.251916 TTTGCATGGTACTCCCTCCG 59.748 55.000 0.00 0.00 0.00 4.63
181 182 0.907704 TTGCATGGTACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
182 183 0.032912 TGCATGGTACTCCCTCCGTA 60.033 55.000 0.00 0.00 0.00 4.02
183 184 1.117150 GCATGGTACTCCCTCCGTAA 58.883 55.000 0.00 0.00 0.00 3.18
184 185 1.483415 GCATGGTACTCCCTCCGTAAA 59.517 52.381 0.00 0.00 0.00 2.01
185 186 2.740904 GCATGGTACTCCCTCCGTAAAC 60.741 54.545 0.00 0.00 0.00 2.01
186 187 2.307496 TGGTACTCCCTCCGTAAACA 57.693 50.000 0.00 0.00 0.00 2.83
187 188 2.607499 TGGTACTCCCTCCGTAAACAA 58.393 47.619 0.00 0.00 0.00 2.83
188 189 2.971330 TGGTACTCCCTCCGTAAACAAA 59.029 45.455 0.00 0.00 0.00 2.83
189 190 3.583966 TGGTACTCCCTCCGTAAACAAAT 59.416 43.478 0.00 0.00 0.00 2.32
190 191 4.776837 TGGTACTCCCTCCGTAAACAAATA 59.223 41.667 0.00 0.00 0.00 1.40
191 192 5.248020 TGGTACTCCCTCCGTAAACAAATAA 59.752 40.000 0.00 0.00 0.00 1.40
192 193 6.172630 GGTACTCCCTCCGTAAACAAATAAA 58.827 40.000 0.00 0.00 0.00 1.40
193 194 6.654582 GGTACTCCCTCCGTAAACAAATAAAA 59.345 38.462 0.00 0.00 0.00 1.52
194 195 6.812879 ACTCCCTCCGTAAACAAATAAAAG 57.187 37.500 0.00 0.00 0.00 2.27
195 196 5.182570 ACTCCCTCCGTAAACAAATAAAAGC 59.817 40.000 0.00 0.00 0.00 3.51
196 197 4.460034 TCCCTCCGTAAACAAATAAAAGCC 59.540 41.667 0.00 0.00 0.00 4.35
197 198 4.218852 CCCTCCGTAAACAAATAAAAGCCA 59.781 41.667 0.00 0.00 0.00 4.75
198 199 5.399013 CCTCCGTAAACAAATAAAAGCCAG 58.601 41.667 0.00 0.00 0.00 4.85
199 200 5.048294 CCTCCGTAAACAAATAAAAGCCAGT 60.048 40.000 0.00 0.00 0.00 4.00
200 201 5.764131 TCCGTAAACAAATAAAAGCCAGTG 58.236 37.500 0.00 0.00 0.00 3.66
201 202 5.531659 TCCGTAAACAAATAAAAGCCAGTGA 59.468 36.000 0.00 0.00 0.00 3.41
202 203 6.207810 TCCGTAAACAAATAAAAGCCAGTGAT 59.792 34.615 0.00 0.00 0.00 3.06
203 204 6.526674 CCGTAAACAAATAAAAGCCAGTGATC 59.473 38.462 0.00 0.00 0.00 2.92
204 205 7.305474 CGTAAACAAATAAAAGCCAGTGATCT 58.695 34.615 0.00 0.00 0.00 2.75
205 206 8.447833 CGTAAACAAATAAAAGCCAGTGATCTA 58.552 33.333 0.00 0.00 0.00 1.98
209 210 9.643693 AACAAATAAAAGCCAGTGATCTAAATG 57.356 29.630 0.00 0.00 0.00 2.32
210 211 7.761249 ACAAATAAAAGCCAGTGATCTAAATGC 59.239 33.333 0.00 0.00 0.00 3.56
211 212 7.651027 AATAAAAGCCAGTGATCTAAATGCT 57.349 32.000 0.00 0.00 0.00 3.79
212 213 5.573337 AAAAGCCAGTGATCTAAATGCTC 57.427 39.130 0.00 0.00 0.00 4.26
213 214 4.500499 AAGCCAGTGATCTAAATGCTCT 57.500 40.909 0.00 0.00 0.00 4.09
214 215 4.500499 AGCCAGTGATCTAAATGCTCTT 57.500 40.909 0.00 0.00 0.00 2.85
215 216 5.620738 AGCCAGTGATCTAAATGCTCTTA 57.379 39.130 0.00 0.00 0.00 2.10
216 217 6.185114 AGCCAGTGATCTAAATGCTCTTAT 57.815 37.500 0.00 0.00 0.00 1.73
217 218 5.996513 AGCCAGTGATCTAAATGCTCTTATG 59.003 40.000 0.00 0.00 0.00 1.90
218 219 5.762218 GCCAGTGATCTAAATGCTCTTATGT 59.238 40.000 0.00 0.00 0.00 2.29
219 220 6.261826 GCCAGTGATCTAAATGCTCTTATGTT 59.738 38.462 0.00 0.00 0.00 2.71
220 221 7.201767 GCCAGTGATCTAAATGCTCTTATGTTT 60.202 37.037 0.00 0.00 0.00 2.83
221 222 8.680903 CCAGTGATCTAAATGCTCTTATGTTTT 58.319 33.333 0.00 0.00 0.00 2.43
249 250 4.965119 AAGGGAGTAATTCGTTTGCATC 57.035 40.909 0.00 0.00 0.00 3.91
254 255 6.316390 AGGGAGTAATTCGTTTGCATCTTTAG 59.684 38.462 0.00 0.00 0.00 1.85
257 258 8.021396 GGAGTAATTCGTTTGCATCTTTAGTTT 58.979 33.333 0.00 0.00 0.00 2.66
258 259 9.394477 GAGTAATTCGTTTGCATCTTTAGTTTT 57.606 29.630 0.00 0.00 0.00 2.43
282 283 8.437360 TTTTGTACCTATAATCTGTCATGCTG 57.563 34.615 0.00 0.00 0.00 4.41
293 294 3.624410 TCTGTCATGCTGCATCAATGTAC 59.376 43.478 13.10 5.20 0.00 2.90
301 302 6.513806 TGCTGCATCAATGTACAAGTTTAT 57.486 33.333 0.00 0.00 0.00 1.40
330 331 5.273674 ACTCTCATATGTCACATGTGAGG 57.726 43.478 32.59 26.45 43.44 3.86
385 410 2.876091 TCATGACTTTAAGCTCCGACG 58.124 47.619 0.00 0.00 0.00 5.12
390 415 0.652592 CTTTAAGCTCCGACGCATGG 59.347 55.000 0.00 0.00 0.00 3.66
398 423 1.963855 CCGACGCATGGTCCACAAA 60.964 57.895 0.00 0.00 42.99 2.83
399 424 1.497278 CGACGCATGGTCCACAAAG 59.503 57.895 0.00 0.00 42.99 2.77
402 427 0.179032 ACGCATGGTCCACAAAGTCA 60.179 50.000 0.00 0.00 0.00 3.41
409 434 5.358922 CATGGTCCACAAAGTCAAATGTTT 58.641 37.500 0.00 0.00 0.00 2.83
410 435 5.413309 TGGTCCACAAAGTCAAATGTTTT 57.587 34.783 0.00 0.00 0.00 2.43
420 445 7.542130 ACAAAGTCAAATGTTTTCACAACTCTC 59.458 33.333 0.00 0.00 36.16 3.20
423 448 6.093495 AGTCAAATGTTTTCACAACTCTCGAA 59.907 34.615 0.00 0.00 36.16 3.71
426 451 3.255725 TGTTTTCACAACTCTCGAACGT 58.744 40.909 0.00 0.00 0.00 3.99
432 457 1.792949 ACAACTCTCGAACGTTGATGC 59.207 47.619 24.75 0.00 42.24 3.91
442 467 3.664276 CGAACGTTGATGCAATTTCGAGT 60.664 43.478 5.00 0.56 40.67 4.18
458 483 1.874345 GAGTCAACCGCCCTCGAAGA 61.874 60.000 0.00 0.00 38.10 2.87
466 491 0.807667 CGCCCTCGAAGACATCTTGG 60.808 60.000 0.00 0.00 36.11 3.61
471 496 3.369892 CCCTCGAAGACATCTTGGTGAAT 60.370 47.826 0.00 0.00 36.11 2.57
473 498 4.697352 CCTCGAAGACATCTTGGTGAATTT 59.303 41.667 0.00 0.00 36.11 1.82
474 499 5.163814 CCTCGAAGACATCTTGGTGAATTTC 60.164 44.000 0.00 0.00 36.11 2.17
484 971 6.405278 TCTTGGTGAATTTCCCTCTTTTTC 57.595 37.500 0.00 0.00 0.00 2.29
511 998 1.133945 ACCAATATATGTGTGCCCGCA 60.134 47.619 0.00 0.00 35.14 5.69
514 1001 0.472044 ATATATGTGTGCCCGCACCA 59.528 50.000 16.77 13.87 45.63 4.17
518 1005 2.742372 GTGTGCCCGCACCAGTAG 60.742 66.667 16.77 0.00 45.63 2.57
519 1006 4.015406 TGTGCCCGCACCAGTAGG 62.015 66.667 16.77 0.00 45.63 3.18
547 1034 9.328721 CATTCTTTTCAAAGTTTTTGGTTCAAC 57.671 29.630 2.09 0.00 37.31 3.18
586 1073 0.816825 CCTGGGCAATGTCCTCGATG 60.817 60.000 5.15 0.00 0.00 3.84
603 1090 4.223800 GCCTCGATCAATGTGGCA 57.776 55.556 4.83 0.00 43.64 4.92
610 1097 2.802247 TCGATCAATGTGGCATTCGATC 59.198 45.455 15.77 15.77 31.38 3.69
618 1105 1.089481 TGGCATTCGATCCTCGCAAC 61.089 55.000 0.00 0.00 40.21 4.17
621 1108 0.652592 CATTCGATCCTCGCAACACC 59.347 55.000 0.00 0.00 40.21 4.16
626 1113 1.079503 GATCCTCGCAACACCTTGTC 58.920 55.000 0.00 0.00 0.00 3.18
696 1183 7.134163 AGTGGTAAGTGCGTAAATTTAACAAC 58.866 34.615 0.00 0.00 0.00 3.32
697 1184 6.911511 GTGGTAAGTGCGTAAATTTAACAACA 59.088 34.615 0.00 0.00 0.00 3.33
704 1191 9.088512 AGTGCGTAAATTTAACAACATGAAAAA 57.911 25.926 0.00 0.00 0.00 1.94
705 1192 9.856803 GTGCGTAAATTTAACAACATGAAAAAT 57.143 25.926 0.00 0.00 0.00 1.82
731 1218 5.703730 ATTATTACTTGGAAGGAACCGGA 57.296 39.130 9.46 0.00 30.14 5.14
732 1219 5.703730 TTATTACTTGGAAGGAACCGGAT 57.296 39.130 9.46 0.00 30.14 4.18
733 1220 3.343941 TTACTTGGAAGGAACCGGATG 57.656 47.619 9.46 0.00 0.00 3.51
734 1221 0.322546 ACTTGGAAGGAACCGGATGC 60.323 55.000 9.46 0.00 0.00 3.91
735 1222 1.369091 CTTGGAAGGAACCGGATGCG 61.369 60.000 9.46 0.00 0.00 4.73
736 1223 2.119484 TTGGAAGGAACCGGATGCGT 62.119 55.000 9.46 0.00 0.00 5.24
737 1224 1.259142 TGGAAGGAACCGGATGCGTA 61.259 55.000 9.46 0.00 0.00 4.42
738 1225 0.108041 GGAAGGAACCGGATGCGTAA 60.108 55.000 9.46 0.00 0.00 3.18
739 1226 1.676615 GGAAGGAACCGGATGCGTAAA 60.677 52.381 9.46 0.00 0.00 2.01
740 1227 1.395954 GAAGGAACCGGATGCGTAAAC 59.604 52.381 9.46 0.00 0.00 2.01
741 1228 0.738412 AGGAACCGGATGCGTAAACG 60.738 55.000 9.46 0.00 43.27 3.60
778 1279 2.029828 ACGGAGAGAGTGTGCAGTAAAG 60.030 50.000 0.00 0.00 0.00 1.85
811 1313 1.751351 GCAAAGGGAGTAAAGCCATCC 59.249 52.381 0.00 0.00 0.00 3.51
1692 2414 1.002134 CCGACAAGGACAAGGCCAT 60.002 57.895 5.01 0.00 45.00 4.40
1705 2427 3.279875 GCCATGCCCGATTCCGAC 61.280 66.667 0.00 0.00 38.22 4.79
1709 2431 2.063979 ATGCCCGATTCCGACTCCA 61.064 57.895 0.00 0.00 38.22 3.86
1710 2432 1.622607 ATGCCCGATTCCGACTCCAA 61.623 55.000 0.00 0.00 38.22 3.53
1727 2449 2.281345 ACGTCACCGTCTCCGTCT 60.281 61.111 0.00 0.00 46.28 4.18
1766 2500 2.429930 CCGACAAGGGCAAGGACA 59.570 61.111 0.00 0.00 35.97 4.02
1767 2501 1.966451 CCGACAAGGGCAAGGACAC 60.966 63.158 0.00 0.00 35.97 3.67
1768 2502 2.317609 CGACAAGGGCAAGGACACG 61.318 63.158 0.00 0.00 0.00 4.49
1769 2503 1.966451 GACAAGGGCAAGGACACGG 60.966 63.158 0.00 0.00 0.00 4.94
1770 2504 2.672996 CAAGGGCAAGGACACGGG 60.673 66.667 0.00 0.00 0.00 5.28
1870 2604 0.545548 AGGAGGTGGACCAGAAGGAC 60.546 60.000 0.00 0.00 38.89 3.85
1924 2658 3.385749 GAAGGATTCGGAGCCGGCA 62.386 63.158 31.54 7.75 40.25 5.69
1946 2680 2.885644 CCGAGGCGAATGTGGACG 60.886 66.667 0.00 0.00 0.00 4.79
1965 2699 2.589159 GAAGGATTCGGAGCCGCC 60.589 66.667 3.59 0.00 36.12 6.13
1995 2729 2.711922 CGGAGGTGGACGAGAAGGG 61.712 68.421 0.00 0.00 0.00 3.95
2423 3157 2.108771 TCTGCGTGCTTCTGTGCA 59.891 55.556 0.00 0.00 41.05 4.57
2424 3158 1.301953 TCTGCGTGCTTCTGTGCAT 60.302 52.632 0.00 0.00 45.23 3.96
2497 3231 2.741092 GAGCCCGTTCAGGTGACA 59.259 61.111 0.00 0.00 38.74 3.58
2732 3466 5.540719 AGCTATCAAGGGAACAGAGTATACC 59.459 44.000 0.00 0.00 0.00 2.73
2734 3468 2.429610 TCAAGGGAACAGAGTATACCGC 59.570 50.000 0.00 0.00 0.00 5.68
2743 3477 4.433615 ACAGAGTATACCGCATTGAAGTG 58.566 43.478 0.00 0.00 0.00 3.16
2762 3496 4.012374 AGTGTGGCTAAATGAACTGATGG 58.988 43.478 0.00 0.00 0.00 3.51
3025 3760 6.414408 CTTGTAAAGCTGTGTGATAAGGAG 57.586 41.667 0.00 0.00 36.98 3.69
3445 4212 5.278169 GCATATGGCTTTCAACCAGATACAG 60.278 44.000 4.56 0.00 41.46 2.74
3513 4280 3.129287 GCTCCACGGTTCATTTTCATGAT 59.871 43.478 0.00 0.00 39.28 2.45
3653 4420 4.037565 ACGCAATATAGATCGTTCCTGTCA 59.962 41.667 0.00 0.00 0.00 3.58
3661 4428 1.905637 TCGTTCCTGTCACAGAGCTA 58.094 50.000 6.30 0.00 32.44 3.32
3669 4436 3.696548 CCTGTCACAGAGCTATCAGTGTA 59.303 47.826 6.30 0.00 42.07 2.90
3703 4470 8.065473 TCTGTCCAAAATTATATGCACAACAT 57.935 30.769 0.00 0.00 43.18 2.71
3705 4472 9.153721 CTGTCCAAAATTATATGCACAACATTT 57.846 29.630 0.00 0.00 40.38 2.32
3726 4493 9.909644 ACATTTGTTACACTCAGTACTAGTTAG 57.090 33.333 0.00 0.00 30.91 2.34
3986 4753 5.041191 AGCCAATAACAGGAGTAAGGATG 57.959 43.478 0.00 0.00 0.00 3.51
4013 4780 2.892334 GCAACGAGCCGAGTTTGCA 61.892 57.895 12.89 0.00 37.23 4.08
4058 4825 1.200483 ATGACGCGTCGATAAAGCTG 58.800 50.000 31.88 0.00 0.00 4.24
4142 4909 1.959085 CAGCATGGCGGTCTTTGTT 59.041 52.632 0.00 0.00 0.00 2.83
4193 4960 5.784023 TGTAGACCCTGTATATTTCCCAGA 58.216 41.667 0.00 0.00 0.00 3.86
4200 4967 6.058183 CCCTGTATATTTCCCAGAAGTTGAG 58.942 44.000 0.00 0.00 0.00 3.02
4202 4969 6.126768 CCTGTATATTTCCCAGAAGTTGAGGA 60.127 42.308 0.00 0.00 0.00 3.71
4220 4987 1.009829 GAAATGCGGTGTAGCTCCTG 58.990 55.000 0.00 0.00 38.13 3.86
4329 5096 4.190001 CTGATGATGCTACATATGCCCTC 58.810 47.826 1.58 0.00 0.00 4.30
4458 5227 9.570468 AGCTACTTATGTTACTGCATAGTACTA 57.430 33.333 4.77 4.77 39.06 1.82
4499 5268 2.378038 TGATGCCAGAAGCCAAATACC 58.622 47.619 0.00 0.00 42.71 2.73
4502 5271 2.446435 TGCCAGAAGCCAAATACCTTC 58.554 47.619 0.00 0.00 42.71 3.46
4540 5309 2.562296 AGATCCTTCCAGGCCAAGTTA 58.438 47.619 5.01 0.00 34.61 2.24
4554 5324 3.864540 GCCAAGTTATGCCCCTTGTTTTC 60.865 47.826 0.00 0.00 37.05 2.29
4558 5328 4.479158 AGTTATGCCCCTTGTTTTCTTCA 58.521 39.130 0.00 0.00 0.00 3.02
4576 5346 2.217750 TCACCGTCAACATCACCAAAG 58.782 47.619 0.00 0.00 0.00 2.77
4646 5422 4.919754 GTGGTTTTCAGATAAGCTGCTTTG 59.080 41.667 21.29 12.92 44.52 2.77
4659 5435 3.563508 GCTGCTTTGAGCTTCTTCTTTC 58.436 45.455 1.29 0.00 42.97 2.62
4660 5436 3.004106 GCTGCTTTGAGCTTCTTCTTTCA 59.996 43.478 1.29 0.00 42.97 2.69
4663 5439 4.883585 TGCTTTGAGCTTCTTCTTTCAGAA 59.116 37.500 1.29 0.00 42.97 3.02
4709 5510 8.792830 TGGTTTTGTCAATGGTAAATTTTTGA 57.207 26.923 0.00 0.00 0.00 2.69
4733 5534 8.274322 TGATAACAGATTGAACCATTATGACCT 58.726 33.333 0.00 0.00 0.00 3.85
4825 5626 8.412456 TGCATCAAAGATGAACAAGTTTTCTAA 58.588 29.630 10.95 0.00 39.49 2.10
4847 5648 3.171911 GTGCAAAATTCGCGGCGG 61.172 61.111 23.46 6.10 0.00 6.13
4862 5663 2.354729 CGGTTGGGCATTGGAGGA 59.645 61.111 0.00 0.00 0.00 3.71
4903 5704 3.322211 TCGGCGATTTGAGAAAGGTTA 57.678 42.857 4.99 0.00 0.00 2.85
4926 5727 9.650371 GTTAAAAATTCTTGATTTTGGAGCAAC 57.350 29.630 0.00 0.00 44.98 4.17
4934 5735 5.193663 TGATTTTGGAGCAACGATTTTCA 57.806 34.783 0.00 0.00 0.00 2.69
4943 5744 5.691754 GGAGCAACGATTTTCATTTTTCTGT 59.308 36.000 0.00 0.00 0.00 3.41
4955 5756 1.838073 TTTTCTGTCCCGAGCTCCCC 61.838 60.000 8.47 0.00 0.00 4.81
4972 5773 1.615651 CCCCCGATGTCAAATCACCAA 60.616 52.381 0.00 0.00 0.00 3.67
4994 5795 5.132897 AGAAATTTGCACGCCATTAGAAA 57.867 34.783 0.00 0.00 0.00 2.52
4999 5800 4.314740 TTGCACGCCATTAGAAAACTTT 57.685 36.364 0.00 0.00 0.00 2.66
5055 5856 3.569194 TGCTTTTACTGTTCACCCAGA 57.431 42.857 0.00 0.00 36.30 3.86
5067 5868 7.610474 CTGTTCACCCAGAAGCAATATGTGC 62.610 48.000 0.00 2.73 43.43 4.57
5096 5898 3.560068 CAGCTATGGATTACCGGTTGAAC 59.440 47.826 15.04 1.71 39.42 3.18
5149 6013 8.458573 TTCTTTAGATTTTGGTAAGAAGTGCA 57.541 30.769 0.00 0.00 32.69 4.57
5153 6017 5.532557 AGATTTTGGTAAGAAGTGCAAAGC 58.467 37.500 0.00 0.00 0.00 3.51
5159 6023 2.877043 AAGAAGTGCAAAGCAACCTG 57.123 45.000 0.00 0.00 41.47 4.00
5163 6027 1.592400 GTGCAAAGCAACCTGTGGC 60.592 57.895 0.00 0.00 41.47 5.01
5175 6039 0.107017 CCTGTGGCTGGATGGTTAGG 60.107 60.000 0.00 0.00 0.00 2.69
5176 6040 0.911769 CTGTGGCTGGATGGTTAGGA 59.088 55.000 0.00 0.00 0.00 2.94
5182 6046 1.139853 GCTGGATGGTTAGGAGGACAG 59.860 57.143 0.00 0.00 0.00 3.51
5185 6049 1.486726 GGATGGTTAGGAGGACAGTGG 59.513 57.143 0.00 0.00 0.00 4.00
5189 6053 3.798515 TGGTTAGGAGGACAGTGGTATT 58.201 45.455 0.00 0.00 0.00 1.89
5190 6054 3.773119 TGGTTAGGAGGACAGTGGTATTC 59.227 47.826 0.00 0.00 0.00 1.75
5191 6055 4.031611 GGTTAGGAGGACAGTGGTATTCT 58.968 47.826 0.00 0.00 0.00 2.40
5192 6056 4.099727 GGTTAGGAGGACAGTGGTATTCTC 59.900 50.000 0.00 0.00 0.00 2.87
5193 6057 2.379972 AGGAGGACAGTGGTATTCTCG 58.620 52.381 0.00 0.00 0.00 4.04
5194 6058 1.409427 GGAGGACAGTGGTATTCTCGG 59.591 57.143 0.00 0.00 0.00 4.63
5195 6059 0.824759 AGGACAGTGGTATTCTCGGC 59.175 55.000 0.00 0.00 0.00 5.54
5196 6060 0.179081 GGACAGTGGTATTCTCGGCC 60.179 60.000 0.00 0.00 0.00 6.13
5197 6061 0.179081 GACAGTGGTATTCTCGGCCC 60.179 60.000 0.00 0.00 0.00 5.80
5198 6062 0.907704 ACAGTGGTATTCTCGGCCCA 60.908 55.000 0.00 0.00 0.00 5.36
5199 6063 0.462047 CAGTGGTATTCTCGGCCCAC 60.462 60.000 0.00 0.00 46.17 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.020437 TGCGATTTCTGTTGTGTGCA 58.980 45.000 0.00 0.00 0.00 4.57
1 2 1.398595 GTGCGATTTCTGTTGTGTGC 58.601 50.000 0.00 0.00 0.00 4.57
2 3 1.260297 TCGTGCGATTTCTGTTGTGTG 59.740 47.619 0.00 0.00 0.00 3.82
3 4 1.577468 TCGTGCGATTTCTGTTGTGT 58.423 45.000 0.00 0.00 0.00 3.72
4 5 2.474526 GGATCGTGCGATTTCTGTTGTG 60.475 50.000 8.54 0.00 34.60 3.33
5 6 1.732259 GGATCGTGCGATTTCTGTTGT 59.268 47.619 8.54 0.00 34.60 3.32
6 7 1.731709 TGGATCGTGCGATTTCTGTTG 59.268 47.619 8.54 0.00 34.60 3.33
7 8 1.732259 GTGGATCGTGCGATTTCTGTT 59.268 47.619 8.54 0.00 34.60 3.16
8 9 1.359848 GTGGATCGTGCGATTTCTGT 58.640 50.000 8.54 0.00 34.60 3.41
9 10 0.298707 CGTGGATCGTGCGATTTCTG 59.701 55.000 8.54 0.00 34.60 3.02
10 11 1.421410 GCGTGGATCGTGCGATTTCT 61.421 55.000 8.54 0.00 42.13 2.52
11 12 1.012234 GCGTGGATCGTGCGATTTC 60.012 57.895 8.54 5.46 42.13 2.17
12 13 1.739929 TGCGTGGATCGTGCGATTT 60.740 52.632 8.54 0.00 42.13 2.17
13 14 2.125713 TGCGTGGATCGTGCGATT 60.126 55.556 8.54 0.00 42.13 3.34
14 15 2.885644 GTGCGTGGATCGTGCGAT 60.886 61.111 6.80 6.80 42.13 4.58
17 18 2.885644 ATCGTGCGTGGATCGTGC 60.886 61.111 0.00 0.00 42.13 5.34
18 19 2.997869 CATCGTGCGTGGATCGTG 59.002 61.111 0.00 0.00 42.13 4.35
19 20 2.885644 GCATCGTGCGTGGATCGT 60.886 61.111 0.00 0.00 42.13 3.73
28 29 1.262683 GGCTAGATTTCAGCATCGTGC 59.737 52.381 0.00 2.28 45.46 5.34
29 30 1.524355 CGGCTAGATTTCAGCATCGTG 59.476 52.381 0.00 0.00 40.95 4.35
30 31 1.858091 CGGCTAGATTTCAGCATCGT 58.142 50.000 0.00 0.00 40.95 3.73
31 32 0.510359 GCGGCTAGATTTCAGCATCG 59.490 55.000 0.00 0.00 40.95 3.84
32 33 1.262683 GTGCGGCTAGATTTCAGCATC 59.737 52.381 0.00 0.00 40.95 3.91
33 34 1.303309 GTGCGGCTAGATTTCAGCAT 58.697 50.000 0.00 0.00 40.95 3.79
34 35 0.036483 TGTGCGGCTAGATTTCAGCA 60.036 50.000 0.00 0.00 40.95 4.41
35 36 1.003116 CATGTGCGGCTAGATTTCAGC 60.003 52.381 0.00 0.00 38.35 4.26
36 37 1.003116 GCATGTGCGGCTAGATTTCAG 60.003 52.381 0.00 0.00 0.00 3.02
37 38 1.016627 GCATGTGCGGCTAGATTTCA 58.983 50.000 0.00 0.00 0.00 2.69
38 39 1.016627 TGCATGTGCGGCTAGATTTC 58.983 50.000 0.00 0.00 45.83 2.17
39 40 1.683943 ATGCATGTGCGGCTAGATTT 58.316 45.000 0.00 0.00 45.83 2.17
40 41 2.549064 TATGCATGTGCGGCTAGATT 57.451 45.000 10.16 0.00 45.83 2.40
41 42 2.027837 TCATATGCATGTGCGGCTAGAT 60.028 45.455 17.86 0.00 45.83 1.98
42 43 1.344114 TCATATGCATGTGCGGCTAGA 59.656 47.619 17.86 0.00 45.83 2.43
43 44 1.799544 TCATATGCATGTGCGGCTAG 58.200 50.000 17.86 0.00 45.83 3.42
44 45 2.252976 TTCATATGCATGTGCGGCTA 57.747 45.000 17.86 0.00 45.83 3.93
45 46 1.268625 CATTCATATGCATGTGCGGCT 59.731 47.619 17.86 0.60 45.83 5.52
46 47 1.267533 TCATTCATATGCATGTGCGGC 59.732 47.619 17.86 0.00 45.83 6.53
47 48 3.629438 TTCATTCATATGCATGTGCGG 57.371 42.857 17.86 9.84 45.83 5.69
48 49 5.051307 CCTTTTTCATTCATATGCATGTGCG 60.051 40.000 17.86 9.27 45.83 5.34
49 50 5.277154 GCCTTTTTCATTCATATGCATGTGC 60.277 40.000 17.86 0.00 42.50 4.57
50 51 5.813157 TGCCTTTTTCATTCATATGCATGTG 59.187 36.000 16.69 16.69 33.57 3.21
51 52 5.979993 TGCCTTTTTCATTCATATGCATGT 58.020 33.333 10.16 0.00 33.57 3.21
52 53 6.128929 CGATGCCTTTTTCATTCATATGCATG 60.129 38.462 10.16 8.85 37.08 4.06
53 54 5.924254 CGATGCCTTTTTCATTCATATGCAT 59.076 36.000 3.79 3.79 39.42 3.96
54 55 5.283294 CGATGCCTTTTTCATTCATATGCA 58.717 37.500 0.00 0.00 0.00 3.96
55 56 4.682860 CCGATGCCTTTTTCATTCATATGC 59.317 41.667 0.00 0.00 0.00 3.14
56 57 4.682860 GCCGATGCCTTTTTCATTCATATG 59.317 41.667 0.00 0.00 0.00 1.78
57 58 4.874970 GCCGATGCCTTTTTCATTCATAT 58.125 39.130 0.00 0.00 0.00 1.78
58 59 4.305989 GCCGATGCCTTTTTCATTCATA 57.694 40.909 0.00 0.00 0.00 2.15
59 60 3.169355 GCCGATGCCTTTTTCATTCAT 57.831 42.857 0.00 0.00 0.00 2.57
60 61 2.652941 GCCGATGCCTTTTTCATTCA 57.347 45.000 0.00 0.00 0.00 2.57
72 73 1.451927 TGAATCCAGTGGCCGATGC 60.452 57.895 3.51 0.00 0.00 3.91
73 74 1.097547 GGTGAATCCAGTGGCCGATG 61.098 60.000 3.51 0.00 35.97 3.84
74 75 1.224592 GGTGAATCCAGTGGCCGAT 59.775 57.895 3.51 0.00 35.97 4.18
75 76 2.668632 GGTGAATCCAGTGGCCGA 59.331 61.111 3.51 0.00 35.97 5.54
76 77 2.438434 GGGTGAATCCAGTGGCCG 60.438 66.667 3.51 0.00 38.11 6.13
77 78 2.438434 CGGGTGAATCCAGTGGCC 60.438 66.667 3.51 0.00 38.11 5.36
78 79 1.745489 GACGGGTGAATCCAGTGGC 60.745 63.158 3.51 0.00 44.21 5.01
79 80 1.447838 CGACGGGTGAATCCAGTGG 60.448 63.158 1.40 1.40 44.21 4.00
80 81 1.292223 ACGACGGGTGAATCCAGTG 59.708 57.895 0.00 0.00 44.21 3.66
81 82 3.787394 ACGACGGGTGAATCCAGT 58.213 55.556 0.00 0.00 46.68 4.00
90 91 2.280592 GACCTTTGCACGACGGGT 60.281 61.111 0.00 0.00 0.00 5.28
91 92 3.411351 CGACCTTTGCACGACGGG 61.411 66.667 0.00 0.00 0.00 5.28
92 93 2.660552 ACGACCTTTGCACGACGG 60.661 61.111 0.00 0.00 0.00 4.79
93 94 2.544359 CACGACCTTTGCACGACG 59.456 61.111 0.24 0.00 0.00 5.12
94 95 2.248431 GCACGACCTTTGCACGAC 59.752 61.111 0.24 0.00 39.93 4.34
95 96 2.202946 TGCACGACCTTTGCACGA 60.203 55.556 0.24 0.00 45.06 4.35
96 97 1.218875 TACTGCACGACCTTTGCACG 61.219 55.000 0.00 0.00 45.06 5.34
97 98 0.512952 CTACTGCACGACCTTTGCAC 59.487 55.000 0.00 0.00 45.06 4.57
99 100 2.074547 TACTACTGCACGACCTTTGC 57.925 50.000 0.00 0.00 40.63 3.68
100 101 2.852413 CGATACTACTGCACGACCTTTG 59.148 50.000 0.00 0.00 0.00 2.77
101 102 2.490903 ACGATACTACTGCACGACCTTT 59.509 45.455 0.00 0.00 0.00 3.11
102 103 2.089980 ACGATACTACTGCACGACCTT 58.910 47.619 0.00 0.00 0.00 3.50
103 104 1.400846 CACGATACTACTGCACGACCT 59.599 52.381 0.00 0.00 0.00 3.85
104 105 1.823828 CACGATACTACTGCACGACC 58.176 55.000 0.00 0.00 0.00 4.79
105 106 1.189403 GCACGATACTACTGCACGAC 58.811 55.000 0.00 0.00 0.00 4.34
106 107 0.247934 CGCACGATACTACTGCACGA 60.248 55.000 0.00 0.00 0.00 4.35
107 108 0.522705 ACGCACGATACTACTGCACG 60.523 55.000 0.00 0.00 0.00 5.34
108 109 0.914551 CACGCACGATACTACTGCAC 59.085 55.000 0.00 0.00 0.00 4.57
109 110 0.179148 CCACGCACGATACTACTGCA 60.179 55.000 0.00 0.00 0.00 4.41
110 111 0.099968 TCCACGCACGATACTACTGC 59.900 55.000 0.00 0.00 0.00 4.40
111 112 1.400846 ACTCCACGCACGATACTACTG 59.599 52.381 0.00 0.00 0.00 2.74
112 113 1.747709 ACTCCACGCACGATACTACT 58.252 50.000 0.00 0.00 0.00 2.57
113 114 2.611292 ACTACTCCACGCACGATACTAC 59.389 50.000 0.00 0.00 0.00 2.73
114 115 2.910199 ACTACTCCACGCACGATACTA 58.090 47.619 0.00 0.00 0.00 1.82
115 116 1.747709 ACTACTCCACGCACGATACT 58.252 50.000 0.00 0.00 0.00 2.12
116 117 2.448219 GAACTACTCCACGCACGATAC 58.552 52.381 0.00 0.00 0.00 2.24
117 118 1.402968 GGAACTACTCCACGCACGATA 59.597 52.381 0.00 0.00 44.67 2.92
118 119 0.172803 GGAACTACTCCACGCACGAT 59.827 55.000 0.00 0.00 44.67 3.73
119 120 1.582968 GGAACTACTCCACGCACGA 59.417 57.895 0.00 0.00 44.67 4.35
120 121 1.800315 CGGAACTACTCCACGCACG 60.800 63.158 0.00 0.00 45.74 5.34
121 122 0.172803 ATCGGAACTACTCCACGCAC 59.827 55.000 0.00 0.00 45.74 5.34
122 123 0.892755 AATCGGAACTACTCCACGCA 59.107 50.000 0.00 0.00 45.74 5.24
123 124 1.278238 CAATCGGAACTACTCCACGC 58.722 55.000 0.00 0.00 45.74 5.34
124 125 1.278238 GCAATCGGAACTACTCCACG 58.722 55.000 0.00 0.00 45.74 4.94
125 126 2.380084 TGCAATCGGAACTACTCCAC 57.620 50.000 0.00 0.00 45.74 4.02
126 127 3.181469 GGTATGCAATCGGAACTACTCCA 60.181 47.826 0.00 0.00 45.74 3.86
127 128 3.181469 TGGTATGCAATCGGAACTACTCC 60.181 47.826 0.00 0.00 41.40 3.85
128 129 4.054780 TGGTATGCAATCGGAACTACTC 57.945 45.455 0.00 0.00 0.00 2.59
129 130 4.380531 CATGGTATGCAATCGGAACTACT 58.619 43.478 0.00 0.00 0.00 2.57
130 131 3.498397 CCATGGTATGCAATCGGAACTAC 59.502 47.826 2.57 0.00 0.00 2.73
131 132 3.135712 ACCATGGTATGCAATCGGAACTA 59.864 43.478 18.10 0.00 0.00 2.24
132 133 2.092429 ACCATGGTATGCAATCGGAACT 60.092 45.455 18.10 0.00 0.00 3.01
133 134 2.290641 GACCATGGTATGCAATCGGAAC 59.709 50.000 19.80 0.00 0.00 3.62
134 135 2.172505 AGACCATGGTATGCAATCGGAA 59.827 45.455 19.80 0.00 0.00 4.30
135 136 1.768275 AGACCATGGTATGCAATCGGA 59.232 47.619 19.80 0.00 0.00 4.55
136 137 2.146342 GAGACCATGGTATGCAATCGG 58.854 52.381 18.69 0.00 0.00 4.18
137 138 2.804527 CTGAGACCATGGTATGCAATCG 59.195 50.000 18.69 1.04 0.00 3.34
138 139 4.077300 TCTGAGACCATGGTATGCAATC 57.923 45.455 18.69 9.40 0.00 2.67
139 140 4.719026 ATCTGAGACCATGGTATGCAAT 57.281 40.909 18.69 6.24 0.00 3.56
140 141 4.508551 AATCTGAGACCATGGTATGCAA 57.491 40.909 18.69 3.86 0.00 4.08
141 142 4.508551 AAATCTGAGACCATGGTATGCA 57.491 40.909 18.69 14.48 0.00 3.96
142 143 4.498682 GCAAAATCTGAGACCATGGTATGC 60.499 45.833 18.69 7.61 0.00 3.14
143 144 4.641541 TGCAAAATCTGAGACCATGGTATG 59.358 41.667 18.69 3.32 0.00 2.39
144 145 4.858850 TGCAAAATCTGAGACCATGGTAT 58.141 39.130 19.80 16.38 0.00 2.73
145 146 4.299586 TGCAAAATCTGAGACCATGGTA 57.700 40.909 19.80 1.05 0.00 3.25
146 147 3.159213 TGCAAAATCTGAGACCATGGT 57.841 42.857 19.89 19.89 0.00 3.55
147 148 3.181479 CCATGCAAAATCTGAGACCATGG 60.181 47.826 11.19 11.19 41.32 3.66
148 149 3.446161 ACCATGCAAAATCTGAGACCATG 59.554 43.478 0.00 0.00 0.00 3.66
149 150 3.705051 ACCATGCAAAATCTGAGACCAT 58.295 40.909 0.00 0.00 0.00 3.55
150 151 3.159213 ACCATGCAAAATCTGAGACCA 57.841 42.857 0.00 0.00 0.00 4.02
151 152 4.265073 AGTACCATGCAAAATCTGAGACC 58.735 43.478 0.00 0.00 0.00 3.85
152 153 4.333926 GGAGTACCATGCAAAATCTGAGAC 59.666 45.833 0.00 0.00 35.97 3.36
153 154 4.517285 GGAGTACCATGCAAAATCTGAGA 58.483 43.478 0.00 0.00 35.97 3.27
154 155 3.629398 GGGAGTACCATGCAAAATCTGAG 59.371 47.826 0.00 0.00 39.85 3.35
155 156 3.266772 AGGGAGTACCATGCAAAATCTGA 59.733 43.478 0.00 0.00 43.89 3.27
156 157 3.624777 AGGGAGTACCATGCAAAATCTG 58.375 45.455 0.00 0.00 43.89 2.90
157 158 3.372025 GGAGGGAGTACCATGCAAAATCT 60.372 47.826 0.00 0.00 43.89 2.40
158 159 2.952310 GGAGGGAGTACCATGCAAAATC 59.048 50.000 0.00 0.00 43.89 2.17
159 160 2.683742 CGGAGGGAGTACCATGCAAAAT 60.684 50.000 0.00 0.00 43.89 1.82
160 161 1.339631 CGGAGGGAGTACCATGCAAAA 60.340 52.381 0.00 0.00 43.89 2.44
161 162 0.251916 CGGAGGGAGTACCATGCAAA 59.748 55.000 0.00 0.00 43.89 3.68
162 163 0.907704 ACGGAGGGAGTACCATGCAA 60.908 55.000 0.00 0.00 43.89 4.08
163 164 0.032912 TACGGAGGGAGTACCATGCA 60.033 55.000 0.00 0.00 43.89 3.96
164 165 1.117150 TTACGGAGGGAGTACCATGC 58.883 55.000 0.00 0.00 43.89 4.06
165 166 2.498481 TGTTTACGGAGGGAGTACCATG 59.502 50.000 0.00 0.00 43.89 3.66
166 167 2.823959 TGTTTACGGAGGGAGTACCAT 58.176 47.619 0.00 0.00 43.89 3.55
167 168 2.307496 TGTTTACGGAGGGAGTACCA 57.693 50.000 0.00 0.00 43.89 3.25
168 169 3.683365 TTTGTTTACGGAGGGAGTACC 57.317 47.619 0.00 0.00 40.67 3.34
169 170 7.624974 GCTTTTATTTGTTTACGGAGGGAGTAC 60.625 40.741 0.00 0.00 0.00 2.73
170 171 6.372381 GCTTTTATTTGTTTACGGAGGGAGTA 59.628 38.462 0.00 0.00 0.00 2.59
171 172 5.182570 GCTTTTATTTGTTTACGGAGGGAGT 59.817 40.000 0.00 0.00 0.00 3.85
172 173 5.392703 GGCTTTTATTTGTTTACGGAGGGAG 60.393 44.000 0.00 0.00 0.00 4.30
173 174 4.460034 GGCTTTTATTTGTTTACGGAGGGA 59.540 41.667 0.00 0.00 0.00 4.20
174 175 4.218852 TGGCTTTTATTTGTTTACGGAGGG 59.781 41.667 0.00 0.00 0.00 4.30
175 176 5.048294 ACTGGCTTTTATTTGTTTACGGAGG 60.048 40.000 0.00 0.00 0.00 4.30
176 177 5.856455 CACTGGCTTTTATTTGTTTACGGAG 59.144 40.000 0.00 0.00 0.00 4.63
177 178 5.531659 TCACTGGCTTTTATTTGTTTACGGA 59.468 36.000 0.00 0.00 0.00 4.69
178 179 5.764131 TCACTGGCTTTTATTTGTTTACGG 58.236 37.500 0.00 0.00 0.00 4.02
179 180 7.305474 AGATCACTGGCTTTTATTTGTTTACG 58.695 34.615 0.00 0.00 0.00 3.18
183 184 9.643693 CATTTAGATCACTGGCTTTTATTTGTT 57.356 29.630 0.00 0.00 0.00 2.83
184 185 7.761249 GCATTTAGATCACTGGCTTTTATTTGT 59.239 33.333 0.00 0.00 0.00 2.83
185 186 7.977853 AGCATTTAGATCACTGGCTTTTATTTG 59.022 33.333 0.00 0.00 0.00 2.32
186 187 8.071177 AGCATTTAGATCACTGGCTTTTATTT 57.929 30.769 0.00 0.00 0.00 1.40
187 188 7.559170 AGAGCATTTAGATCACTGGCTTTTATT 59.441 33.333 0.00 0.00 34.30 1.40
188 189 7.059156 AGAGCATTTAGATCACTGGCTTTTAT 58.941 34.615 0.00 0.00 34.30 1.40
189 190 6.418101 AGAGCATTTAGATCACTGGCTTTTA 58.582 36.000 0.00 0.00 34.30 1.52
190 191 5.259632 AGAGCATTTAGATCACTGGCTTTT 58.740 37.500 0.00 0.00 34.30 2.27
191 192 4.853007 AGAGCATTTAGATCACTGGCTTT 58.147 39.130 0.00 0.00 34.30 3.51
192 193 4.500499 AGAGCATTTAGATCACTGGCTT 57.500 40.909 0.00 0.00 34.30 4.35
193 194 4.500499 AAGAGCATTTAGATCACTGGCT 57.500 40.909 0.00 0.00 34.30 4.75
194 195 5.762218 ACATAAGAGCATTTAGATCACTGGC 59.238 40.000 0.00 0.00 34.30 4.85
195 196 7.798596 AACATAAGAGCATTTAGATCACTGG 57.201 36.000 0.00 0.00 34.30 4.00
220 221 7.435784 GCAAACGAATTACTCCCTTTGTAAAAA 59.564 33.333 0.00 0.00 34.20 1.94
221 222 6.919115 GCAAACGAATTACTCCCTTTGTAAAA 59.081 34.615 0.00 0.00 34.20 1.52
222 223 6.039493 TGCAAACGAATTACTCCCTTTGTAAA 59.961 34.615 0.00 0.00 34.20 2.01
223 224 5.531659 TGCAAACGAATTACTCCCTTTGTAA 59.468 36.000 0.00 0.00 34.87 2.41
224 225 5.064558 TGCAAACGAATTACTCCCTTTGTA 58.935 37.500 0.00 0.00 0.00 2.41
225 226 3.886505 TGCAAACGAATTACTCCCTTTGT 59.113 39.130 0.00 0.00 0.00 2.83
226 227 4.497473 TGCAAACGAATTACTCCCTTTG 57.503 40.909 0.00 0.00 0.00 2.77
227 228 5.010282 AGATGCAAACGAATTACTCCCTTT 58.990 37.500 0.00 0.00 0.00 3.11
228 229 4.589908 AGATGCAAACGAATTACTCCCTT 58.410 39.130 0.00 0.00 0.00 3.95
229 230 4.222124 AGATGCAAACGAATTACTCCCT 57.778 40.909 0.00 0.00 0.00 4.20
230 231 4.965119 AAGATGCAAACGAATTACTCCC 57.035 40.909 0.00 0.00 0.00 4.30
231 232 7.073342 ACTAAAGATGCAAACGAATTACTCC 57.927 36.000 0.00 0.00 0.00 3.85
232 233 8.950403 AAACTAAAGATGCAAACGAATTACTC 57.050 30.769 0.00 0.00 0.00 2.59
233 234 9.744468 AAAAACTAAAGATGCAAACGAATTACT 57.256 25.926 0.00 0.00 0.00 2.24
257 258 7.012327 GCAGCATGACAGATTATAGGTACAAAA 59.988 37.037 0.00 0.00 39.69 2.44
258 259 6.483307 GCAGCATGACAGATTATAGGTACAAA 59.517 38.462 0.00 0.00 39.69 2.83
307 308 5.893824 ACCTCACATGTGACATATGAGAGTA 59.106 40.000 29.65 0.00 39.84 2.59
308 309 4.713814 ACCTCACATGTGACATATGAGAGT 59.286 41.667 29.65 22.55 39.84 3.24
309 310 5.068855 AGACCTCACATGTGACATATGAGAG 59.931 44.000 29.65 22.02 40.60 3.20
310 311 4.958581 AGACCTCACATGTGACATATGAGA 59.041 41.667 29.65 14.14 39.33 3.27
311 312 5.273674 AGACCTCACATGTGACATATGAG 57.726 43.478 23.25 23.25 37.20 2.90
315 316 5.745312 AGAAAGACCTCACATGTGACATA 57.255 39.130 24.56 4.55 35.46 2.29
359 360 7.402640 GTCGGAGCTTAAAGTCATGAAATAAG 58.597 38.462 14.55 14.55 0.00 1.73
365 366 2.876091 CGTCGGAGCTTAAAGTCATGA 58.124 47.619 0.00 0.00 0.00 3.07
374 375 1.141019 GACCATGCGTCGGAGCTTA 59.859 57.895 0.00 0.00 38.13 3.09
385 410 3.243839 ACATTTGACTTTGTGGACCATGC 60.244 43.478 0.00 0.00 0.00 4.06
390 415 5.866633 TGTGAAAACATTTGACTTTGTGGAC 59.133 36.000 0.00 0.00 0.00 4.02
398 423 5.584649 TCGAGAGTTGTGAAAACATTTGACT 59.415 36.000 0.00 0.00 0.00 3.41
399 424 5.806286 TCGAGAGTTGTGAAAACATTTGAC 58.194 37.500 0.00 0.00 0.00 3.18
402 427 5.163794 ACGTTCGAGAGTTGTGAAAACATTT 60.164 36.000 0.00 0.00 0.00 2.32
409 434 3.153676 TCAACGTTCGAGAGTTGTGAA 57.846 42.857 24.46 10.89 45.56 3.18
410 435 2.855660 TCAACGTTCGAGAGTTGTGA 57.144 45.000 24.46 11.60 45.56 3.58
420 445 2.833497 TCGAAATTGCATCAACGTTCG 58.167 42.857 0.00 15.34 41.43 3.95
423 448 2.805671 TGACTCGAAATTGCATCAACGT 59.194 40.909 0.00 0.00 0.00 3.99
426 451 3.364864 CGGTTGACTCGAAATTGCATCAA 60.365 43.478 0.00 0.00 0.00 2.57
432 457 0.168128 GGGCGGTTGACTCGAAATTG 59.832 55.000 0.00 0.00 0.00 2.32
442 467 1.541310 ATGTCTTCGAGGGCGGTTGA 61.541 55.000 0.00 0.00 38.28 3.18
458 483 4.664688 AGAGGGAAATTCACCAAGATGT 57.335 40.909 0.00 0.00 0.00 3.06
466 491 4.560128 GGCAGAAAAAGAGGGAAATTCAC 58.440 43.478 0.00 0.00 0.00 3.18
471 496 0.958822 GCGGCAGAAAAAGAGGGAAA 59.041 50.000 0.00 0.00 0.00 3.13
473 498 0.889186 GTGCGGCAGAAAAAGAGGGA 60.889 55.000 1.18 0.00 0.00 4.20
474 499 1.581447 GTGCGGCAGAAAAAGAGGG 59.419 57.895 1.18 0.00 0.00 4.30
484 971 2.031769 CACACATATATTGGTGCGGCAG 60.032 50.000 1.18 0.00 38.57 4.85
511 998 6.365520 ACTTTGAAAAGAATGACCTACTGGT 58.634 36.000 9.71 0.00 43.35 4.00
514 1001 9.586435 CAAAAACTTTGAAAAGAATGACCTACT 57.414 29.630 9.71 0.00 39.31 2.57
518 1005 7.609760 ACCAAAAACTTTGAAAAGAATGACC 57.390 32.000 9.71 0.00 39.31 4.02
519 1006 8.716909 TGAACCAAAAACTTTGAAAAGAATGAC 58.283 29.630 9.71 0.00 39.31 3.06
566 1053 1.274703 ATCGAGGACATTGCCCAGGT 61.275 55.000 0.00 0.00 0.00 4.00
567 1054 0.816825 CATCGAGGACATTGCCCAGG 60.817 60.000 0.00 0.00 0.00 4.45
568 1055 1.442526 GCATCGAGGACATTGCCCAG 61.443 60.000 0.00 0.00 0.00 4.45
569 1056 1.451927 GCATCGAGGACATTGCCCA 60.452 57.895 0.00 0.00 0.00 5.36
586 1073 1.002033 GAATGCCACATTGATCGAGGC 60.002 52.381 4.99 4.99 45.41 4.70
610 1097 1.230635 CCTGACAAGGTGTTGCGAGG 61.231 60.000 0.00 0.00 38.96 4.63
618 1105 3.695830 TTAACTAGCCCTGACAAGGTG 57.304 47.619 0.00 0.00 42.74 4.00
621 1108 6.385649 TTTGTTTTAACTAGCCCTGACAAG 57.614 37.500 0.00 0.00 0.00 3.16
626 1113 3.365969 CCGCTTTGTTTTAACTAGCCCTG 60.366 47.826 11.76 2.90 35.39 4.45
666 1153 5.761165 ATTTACGCACTTACCACTTTTGT 57.239 34.783 0.00 0.00 0.00 2.83
704 1191 9.734984 CCGGTTCCTTCCAAGTAATAATTATAT 57.265 33.333 0.00 0.00 0.00 0.86
705 1192 8.936787 TCCGGTTCCTTCCAAGTAATAATTATA 58.063 33.333 0.00 0.00 0.00 0.98
713 1200 2.617021 GCATCCGGTTCCTTCCAAGTAA 60.617 50.000 0.00 0.00 0.00 2.24
718 1205 1.259142 TACGCATCCGGTTCCTTCCA 61.259 55.000 0.00 0.00 39.22 3.53
719 1206 0.108041 TTACGCATCCGGTTCCTTCC 60.108 55.000 0.00 0.00 39.22 3.46
720 1207 1.395954 GTTTACGCATCCGGTTCCTTC 59.604 52.381 0.00 0.00 39.22 3.46
721 1208 1.445871 GTTTACGCATCCGGTTCCTT 58.554 50.000 0.00 0.00 39.22 3.36
722 1209 0.738412 CGTTTACGCATCCGGTTCCT 60.738 55.000 0.00 0.00 39.22 3.36
723 1210 1.711500 CGTTTACGCATCCGGTTCC 59.289 57.895 0.00 0.00 39.22 3.62
753 1240 2.364324 ACTGCACACTCTCTCCGTAAAA 59.636 45.455 0.00 0.00 0.00 1.52
754 1241 1.961394 ACTGCACACTCTCTCCGTAAA 59.039 47.619 0.00 0.00 0.00 2.01
756 1243 2.484742 TACTGCACACTCTCTCCGTA 57.515 50.000 0.00 0.00 0.00 4.02
763 1264 5.133221 ACCATTTTCTTTACTGCACACTCT 58.867 37.500 0.00 0.00 0.00 3.24
768 1269 5.709966 CCCTAACCATTTTCTTTACTGCAC 58.290 41.667 0.00 0.00 0.00 4.57
778 1279 3.169908 TCCCTTTGCCCTAACCATTTTC 58.830 45.455 0.00 0.00 0.00 2.29
811 1313 5.808540 TCCCTCGTAATATCTGTGTTTTTCG 59.191 40.000 0.00 0.00 0.00 3.46
1034 1545 4.760047 CTTCGGAGGTGGGCGGTG 62.760 72.222 0.00 0.00 0.00 4.94
1069 1580 4.414956 AGTGGGGAGGGCATCGGA 62.415 66.667 0.00 0.00 0.00 4.55
1071 1582 3.866582 GGAGTGGGGAGGGCATCG 61.867 72.222 0.00 0.00 0.00 3.84
1692 2414 2.287274 TTGGAGTCGGAATCGGGCA 61.287 57.895 0.00 0.00 36.95 5.36
1758 2492 3.365265 CCTTGCCCGTGTCCTTGC 61.365 66.667 0.00 0.00 0.00 4.01
1759 2493 3.365265 GCCTTGCCCGTGTCCTTG 61.365 66.667 0.00 0.00 0.00 3.61
1760 2494 4.660938 GGCCTTGCCCGTGTCCTT 62.661 66.667 0.00 0.00 44.06 3.36
1946 2680 1.592939 GCGGCTCCGAATCCTTCTC 60.593 63.158 13.11 0.00 42.83 2.87
2497 3231 5.875359 GGTGTAATCGAAATTCAGGTTCTCT 59.125 40.000 0.00 0.00 0.00 3.10
2732 3466 2.987413 TTTAGCCACACTTCAATGCG 57.013 45.000 0.00 0.00 0.00 4.73
2734 3468 5.860182 CAGTTCATTTAGCCACACTTCAATG 59.140 40.000 0.00 0.00 32.65 2.82
2743 3477 5.414454 TGTAACCATCAGTTCATTTAGCCAC 59.586 40.000 0.00 0.00 40.05 5.01
2762 3496 6.715347 ATGGGCAGGAATCTAATTTGTAAC 57.285 37.500 0.00 0.00 0.00 2.50
2842 3576 2.022934 TCAATGCACAACAGAGTTGCA 58.977 42.857 9.60 4.56 39.91 4.08
2843 3577 2.291465 TCTCAATGCACAACAGAGTTGC 59.709 45.455 9.60 0.00 0.00 4.17
2844 3578 4.023450 ACATCTCAATGCACAACAGAGTTG 60.023 41.667 8.24 8.24 36.26 3.16
2845 3579 4.139786 ACATCTCAATGCACAACAGAGTT 58.860 39.130 0.00 0.00 36.26 3.01
2846 3580 3.748083 ACATCTCAATGCACAACAGAGT 58.252 40.909 0.00 0.00 36.26 3.24
2847 3581 3.749609 TGACATCTCAATGCACAACAGAG 59.250 43.478 0.00 0.00 36.26 3.35
2848 3582 3.742385 TGACATCTCAATGCACAACAGA 58.258 40.909 0.00 0.00 36.26 3.41
2849 3583 3.669824 GCTGACATCTCAATGCACAACAG 60.670 47.826 0.00 0.00 36.26 3.16
2850 3584 2.227149 GCTGACATCTCAATGCACAACA 59.773 45.455 0.00 0.00 36.26 3.33
2851 3585 2.227149 TGCTGACATCTCAATGCACAAC 59.773 45.455 0.00 0.00 36.26 3.32
2906 3641 6.992063 TCTTCAAATTCAGAACTATGCCTC 57.008 37.500 0.00 0.00 0.00 4.70
3025 3760 1.946081 CAAAACAATGTTGGCCCAACC 59.054 47.619 23.38 6.63 42.96 3.77
3445 4212 8.503458 AACTCTCTTATTGATATGCATATGGC 57.497 34.615 23.76 10.82 45.13 4.40
3513 4280 5.445069 TCAGTTGGAAAGAAGGACATTTCA 58.555 37.500 0.00 0.00 37.19 2.69
3643 4410 2.164422 TGATAGCTCTGTGACAGGAACG 59.836 50.000 13.33 0.62 31.51 3.95
3703 4470 7.864379 GTGCTAACTAGTACTGAGTGTAACAAA 59.136 37.037 5.39 0.00 36.18 2.83
3705 4472 6.713903 AGTGCTAACTAGTACTGAGTGTAACA 59.286 38.462 5.39 1.05 45.52 2.41
3726 4493 5.991933 TCAGATGGAGAGGATATTAGTGC 57.008 43.478 0.00 0.00 0.00 4.40
4013 4780 2.036256 GGGATGCCTGCACCAGTT 59.964 61.111 0.00 0.00 0.00 3.16
4097 4864 3.156293 CACAAACATGGTCCATCTCCAA 58.844 45.455 0.00 0.00 38.52 3.53
4142 4909 1.827315 CGGCGAGCAACAGTTCGAAA 61.827 55.000 0.00 0.00 38.09 3.46
4193 4960 1.981256 ACACCGCATTTCCTCAACTT 58.019 45.000 0.00 0.00 0.00 2.66
4200 4967 0.107654 AGGAGCTACACCGCATTTCC 60.108 55.000 0.00 0.00 0.00 3.13
4202 4969 0.613260 TCAGGAGCTACACCGCATTT 59.387 50.000 0.00 0.00 0.00 2.32
4220 4987 6.875076 AGTGTACATTACATGAGTTACCCTC 58.125 40.000 0.00 0.00 41.34 4.30
4329 5096 0.994995 CACGACAGAGATGGCGAAAG 59.005 55.000 10.95 0.00 44.30 2.62
4394 5163 3.118665 AGCAGCAACCACAGAAACAAAAT 60.119 39.130 0.00 0.00 0.00 1.82
4491 5260 3.496331 ACCAACCACAGAAGGTATTTGG 58.504 45.455 0.00 0.00 42.25 3.28
4494 5263 3.329520 TGCTACCAACCACAGAAGGTATT 59.670 43.478 0.00 0.00 42.25 1.89
4499 5268 3.057969 TCATGCTACCAACCACAGAAG 57.942 47.619 0.00 0.00 0.00 2.85
4502 5271 3.057969 TCTTCATGCTACCAACCACAG 57.942 47.619 0.00 0.00 0.00 3.66
4540 5309 1.970640 GGTGAAGAAAACAAGGGGCAT 59.029 47.619 0.00 0.00 0.00 4.40
4554 5324 1.877637 TGGTGATGTTGACGGTGAAG 58.122 50.000 0.00 0.00 0.00 3.02
4558 5328 1.946768 CACTTTGGTGATGTTGACGGT 59.053 47.619 0.00 0.00 45.61 4.83
4576 5346 3.244976 CCGATGACAAAAATTCCAGCAC 58.755 45.455 0.00 0.00 0.00 4.40
4613 5387 3.937814 TCTGAAAACCACGACTATGCAT 58.062 40.909 3.79 3.79 0.00 3.96
4660 5436 7.869429 CCAGAACAAAAATATCACAGCTTTTCT 59.131 33.333 0.00 0.00 0.00 2.52
4663 5439 7.054491 ACCAGAACAAAAATATCACAGCTTT 57.946 32.000 0.00 0.00 0.00 3.51
4709 5510 8.906867 CAAGGTCATAATGGTTCAATCTGTTAT 58.093 33.333 0.00 0.00 0.00 1.89
4716 5517 6.350110 CCGAAACAAGGTCATAATGGTTCAAT 60.350 38.462 3.98 0.00 40.05 2.57
4718 5519 4.457603 CCGAAACAAGGTCATAATGGTTCA 59.542 41.667 3.98 0.00 40.05 3.18
4726 5527 2.851263 AGCACCGAAACAAGGTCATA 57.149 45.000 0.00 0.00 40.59 2.15
4728 5529 1.876416 GCTAGCACCGAAACAAGGTCA 60.876 52.381 10.63 0.00 40.59 4.02
4733 5534 0.321298 GGGAGCTAGCACCGAAACAA 60.321 55.000 22.76 0.00 0.00 2.83
4825 5626 0.240945 CCGCGAATTTTGCACTCCTT 59.759 50.000 8.23 0.00 0.00 3.36
4847 5648 1.000396 AGCTCCTCCAATGCCCAAC 60.000 57.895 0.00 0.00 0.00 3.77
4856 5657 1.349026 CTTTTGTCCAGAGCTCCTCCA 59.651 52.381 10.93 0.00 0.00 3.86
4862 5663 3.297134 TTGTTCCTTTTGTCCAGAGCT 57.703 42.857 0.00 0.00 0.00 4.09
4903 5704 6.760770 TCGTTGCTCCAAAATCAAGAATTTTT 59.239 30.769 0.00 0.00 43.51 1.94
4926 5727 5.041951 TCGGGACAGAAAAATGAAAATCG 57.958 39.130 0.00 0.00 0.00 3.34
4934 5735 1.340114 GGGAGCTCGGGACAGAAAAAT 60.340 52.381 7.83 0.00 0.00 1.82
4955 5756 4.764679 TTTCTTGGTGATTTGACATCGG 57.235 40.909 0.00 0.00 0.00 4.18
4972 5773 4.782019 TTCTAATGGCGTGCAAATTTCT 57.218 36.364 0.00 0.00 0.00 2.52
5032 5833 4.707448 TCTGGGTGAACAGTAAAAGCAAAA 59.293 37.500 0.00 0.00 39.48 2.44
5036 5837 3.304726 GCTTCTGGGTGAACAGTAAAAGC 60.305 47.826 0.00 0.00 38.10 3.51
5067 5868 4.438880 CCGGTAATCCATAGCTGATACGAG 60.439 50.000 0.00 0.00 0.00 4.18
5096 5898 2.432510 CTGGCTTAGGAGTTAGGAGTGG 59.567 54.545 0.00 0.00 0.00 4.00
5142 6006 1.536709 CCACAGGTTGCTTTGCACTTC 60.537 52.381 0.00 0.00 38.71 3.01
5149 6013 0.178953 ATCCAGCCACAGGTTGCTTT 60.179 50.000 0.00 0.00 35.12 3.51
5153 6017 0.540365 AACCATCCAGCCACAGGTTG 60.540 55.000 0.00 0.00 40.80 3.77
5159 6023 0.181350 CCTCCTAACCATCCAGCCAC 59.819 60.000 0.00 0.00 0.00 5.01
5163 6027 2.169352 CACTGTCCTCCTAACCATCCAG 59.831 54.545 0.00 0.00 0.00 3.86
5175 6039 1.202428 GCCGAGAATACCACTGTCCTC 60.202 57.143 0.00 0.00 0.00 3.71
5176 6040 0.824759 GCCGAGAATACCACTGTCCT 59.175 55.000 0.00 0.00 0.00 3.85
5182 6046 4.534401 GTGGGCCGAGAATACCAC 57.466 61.111 0.00 0.00 45.56 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.