Multiple sequence alignment - TraesCS5A01G322700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G322700 chr5A 100.000 5022 0 0 925 5946 535141019 535135998 0.000000e+00 9274.0
1 TraesCS5A01G322700 chr5A 100.000 597 0 0 1 597 535141943 535141347 0.000000e+00 1103.0
2 TraesCS5A01G322700 chr5B 90.641 3152 170 64 2878 5946 507874904 507871795 0.000000e+00 4071.0
3 TraesCS5A01G322700 chr5B 87.982 882 48 13 1854 2712 507875754 507874908 0.000000e+00 989.0
4 TraesCS5A01G322700 chr5B 93.231 325 9 2 1010 1334 507876501 507876190 3.250000e-127 466.0
5 TraesCS5A01G322700 chr5B 84.274 248 15 8 17 259 507881129 507880901 2.790000e-53 220.0
6 TraesCS5A01G322700 chr5B 92.258 155 11 1 2714 2868 299602375 299602222 1.000000e-52 219.0
7 TraesCS5A01G322700 chr5B 98.214 56 1 0 925 980 507876622 507876567 1.360000e-16 99.0
8 TraesCS5A01G322700 chr5D 94.120 2092 88 21 3024 5103 421534399 421532331 0.000000e+00 3149.0
9 TraesCS5A01G322700 chr5D 87.764 899 56 17 1837 2707 421535623 421534751 0.000000e+00 1002.0
10 TraesCS5A01G322700 chr5D 85.082 791 60 20 1078 1838 421536417 421535655 0.000000e+00 754.0
11 TraesCS5A01G322700 chr5D 81.527 406 27 19 5128 5507 421531789 421531406 2.100000e-74 291.0
12 TraesCS5A01G322700 chr5D 82.645 242 18 7 23 259 421538619 421538397 6.080000e-45 193.0
13 TraesCS5A01G322700 chr5D 98.214 56 1 0 925 980 421536575 421536520 1.360000e-16 99.0
14 TraesCS5A01G322700 chr5D 100.000 32 0 0 5504 5535 421531326 421531295 6.440000e-05 60.2
15 TraesCS5A01G322700 chr4D 92.857 154 11 0 2714 2867 74079351 74079504 2.160000e-54 224.0
16 TraesCS5A01G322700 chr1A 92.258 155 12 0 2713 2867 155857705 155857859 2.790000e-53 220.0
17 TraesCS5A01G322700 chr7A 91.772 158 11 2 2714 2870 579808374 579808530 1.000000e-52 219.0
18 TraesCS5A01G322700 chr6D 91.304 161 12 2 2714 2873 410398431 410398272 1.000000e-52 219.0
19 TraesCS5A01G322700 chr2D 91.772 158 12 1 2711 2868 79056164 79056320 1.000000e-52 219.0
20 TraesCS5A01G322700 chr1D 91.250 160 12 2 2711 2870 7349858 7349701 3.610000e-52 217.0
21 TraesCS5A01G322700 chr4A 90.625 160 14 1 2713 2872 598724608 598724450 1.680000e-50 211.0
22 TraesCS5A01G322700 chr1B 89.881 168 12 5 2703 2870 632021086 632020924 1.680000e-50 211.0
23 TraesCS5A01G322700 chr1B 90.647 139 7 4 5550 5682 353173926 353173788 4.730000e-41 180.0
24 TraesCS5A01G322700 chr1B 89.928 139 8 4 5550 5682 403265832 403265694 2.200000e-39 174.0
25 TraesCS5A01G322700 chr4B 91.304 138 7 4 5550 5682 160411828 160411691 3.660000e-42 183.0
26 TraesCS5A01G322700 chr4B 90.647 139 7 4 5550 5682 391087700 391087838 4.730000e-41 180.0
27 TraesCS5A01G322700 chr6B 90.647 139 7 4 5550 5682 19417065 19416927 4.730000e-41 180.0
28 TraesCS5A01G322700 chr6B 90.647 139 7 4 5550 5682 104016068 104016206 4.730000e-41 180.0
29 TraesCS5A01G322700 chr3B 90.714 140 6 5 5550 5682 148524525 148524386 4.730000e-41 180.0
30 TraesCS5A01G322700 chr3B 90.000 140 10 2 5550 5685 224125537 224125398 1.700000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G322700 chr5A 535135998 535141943 5945 True 5188.50 9274 100.000000 1 5946 2 chr5A.!!$R1 5945
1 TraesCS5A01G322700 chr5B 507871795 507876622 4827 True 1406.25 4071 92.517000 925 5946 4 chr5B.!!$R3 5021
2 TraesCS5A01G322700 chr5D 421531295 421538619 7324 True 792.60 3149 89.907429 23 5535 7 chr5D.!!$R1 5512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.033504 CCGTAACAGACTGCTGGTGT 59.966 55.0 1.25 0.00 43.34 4.16 F
1348 2634 0.034337 TGAGTAAAAGTTCCGCCGCT 59.966 50.0 0.00 0.00 0.00 5.52 F
1534 2839 0.106918 TTGCCTCGGGTGTGTTTTCT 60.107 50.0 0.00 0.00 0.00 2.52 F
1667 2973 0.108898 CTCAGTGGACAGCTTCTCCG 60.109 60.0 3.24 0.00 0.00 4.63 F
1715 3033 0.546122 TACCTAGCAATGTGGGCTGG 59.454 55.0 0.00 0.00 42.62 4.85 F
2453 3834 0.754957 TTGGCACTGTTGGACAAGGG 60.755 55.0 0.00 0.00 0.00 3.95 F
3089 4707 0.239347 CAGAACAGCAAAGGGAAGCG 59.761 55.0 0.00 0.00 35.48 4.68 F
4132 5770 0.587768 TGACATCACAAACAGCTGCG 59.412 50.0 15.27 5.12 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 2821 0.106918 AAGAAAACACACCCGAGGCA 60.107 50.0 0.00 0.0 0.00 4.75 R
2440 3821 0.389025 GGTTTGCCCTTGTCCAACAG 59.611 55.0 0.00 0.0 0.00 3.16 R
2611 3994 0.475906 GAGATCCCCCACCATCAAGG 59.524 60.0 0.00 0.0 45.67 3.61 R
2792 4177 1.079503 GCGGACTGAAATGAGTGACC 58.920 55.0 0.00 0.0 0.00 4.02 R
2802 4187 1.262417 TGGACTACATGCGGACTGAA 58.738 50.0 0.00 0.0 0.00 3.02 R
4132 5770 0.179018 ACTTTCCACTGCACTCCACC 60.179 55.0 0.00 0.0 0.00 4.61 R
4294 5933 0.391528 CGCGCCCATGGATCATGATA 60.392 55.0 15.22 0.0 43.81 2.15 R
5200 7382 0.682209 AGACCATGCACCATGCCTTC 60.682 55.0 0.00 0.0 44.23 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.291209 AATTGATGAGTGTGTGGCCA 57.709 45.000 0.00 0.00 0.00 5.36
20 21 1.538047 ATTGATGAGTGTGTGGCCAC 58.462 50.000 29.67 29.67 42.19 5.01
21 22 0.884259 TTGATGAGTGTGTGGCCACG 60.884 55.000 30.07 0.00 44.92 4.94
28 29 0.739813 GTGTGTGGCCACGAGATACC 60.740 60.000 30.07 12.47 44.92 2.73
36 37 0.462047 CCACGAGATACCCCAAGTGC 60.462 60.000 0.00 0.00 0.00 4.40
37 38 0.249120 CACGAGATACCCCAAGTGCA 59.751 55.000 0.00 0.00 0.00 4.57
38 39 0.537188 ACGAGATACCCCAAGTGCAG 59.463 55.000 0.00 0.00 0.00 4.41
65 66 2.419739 GGAGACCTCCGAGCTCACC 61.420 68.421 15.40 0.06 40.36 4.02
66 67 2.752238 AGACCTCCGAGCTCACCG 60.752 66.667 15.40 0.00 0.00 4.94
74 75 4.779733 GAGCTCACCGGGGAGGGA 62.780 72.222 34.23 8.74 46.96 4.20
78 79 2.762459 TCACCGGGGAGGGAATCG 60.762 66.667 0.00 0.00 46.96 3.34
94 95 0.176680 ATCGTCTCTGGGTCACATGC 59.823 55.000 0.00 0.00 0.00 4.06
99 100 1.193323 CTCTGGGTCACATGCTCTCT 58.807 55.000 0.00 0.00 0.00 3.10
108 109 1.651138 CACATGCTCTCTCGTTCGTTC 59.349 52.381 0.00 0.00 0.00 3.95
123 124 0.246603 CGTTCAACGTTATCGGCACG 60.247 55.000 0.00 0.00 45.95 5.34
124 125 3.463630 CGTTCAACGTTATCGGCACGG 62.464 57.143 0.00 0.00 45.08 4.94
141 142 6.512342 GGCACGGATAATATCACTAGTACT 57.488 41.667 0.00 0.00 0.00 2.73
142 143 7.621428 GGCACGGATAATATCACTAGTACTA 57.379 40.000 1.89 1.89 0.00 1.82
143 144 7.470900 GGCACGGATAATATCACTAGTACTAC 58.529 42.308 0.00 0.00 0.00 2.73
144 145 7.336427 GGCACGGATAATATCACTAGTACTACT 59.664 40.741 0.00 0.00 0.00 2.57
145 146 8.728833 GCACGGATAATATCACTAGTACTACTT 58.271 37.037 0.00 0.00 0.00 2.24
175 176 1.669115 CTCAGCCAGACAACCACCG 60.669 63.158 0.00 0.00 0.00 4.94
176 177 2.111043 CAGCCAGACAACCACCGT 59.889 61.111 0.00 0.00 0.00 4.83
177 178 1.961277 CAGCCAGACAACCACCGTC 60.961 63.158 0.00 0.00 0.00 4.79
178 179 2.110213 GCCAGACAACCACCGTCA 59.890 61.111 0.00 0.00 35.77 4.35
179 180 1.302511 GCCAGACAACCACCGTCAT 60.303 57.895 0.00 0.00 35.77 3.06
180 181 1.577328 GCCAGACAACCACCGTCATG 61.577 60.000 0.00 0.00 35.77 3.07
181 182 0.034756 CCAGACAACCACCGTCATGA 59.965 55.000 0.00 0.00 35.77 3.07
182 183 1.432514 CAGACAACCACCGTCATGAG 58.567 55.000 0.00 0.00 35.77 2.90
200 201 1.135915 GAGTCATGACACTCCATCGCT 59.864 52.381 27.02 2.52 37.43 4.93
233 234 1.019278 TTGGATCGGAAGCAACGAGC 61.019 55.000 4.70 4.70 44.24 5.03
249 250 3.127533 GCGTAACAGCCTGCCCAG 61.128 66.667 0.00 0.00 0.00 4.45
259 260 4.028490 CTGCCCAGCCCCGTAACA 62.028 66.667 0.00 0.00 0.00 2.41
261 262 3.712907 GCCCAGCCCCGTAACAGA 61.713 66.667 0.00 0.00 0.00 3.41
262 263 2.267961 CCCAGCCCCGTAACAGAC 59.732 66.667 0.00 0.00 0.00 3.51
268 269 1.079127 CCCCGTAACAGACTGCTGG 60.079 63.158 1.25 0.00 46.60 4.85
269 270 1.671742 CCCGTAACAGACTGCTGGT 59.328 57.895 1.25 0.00 46.60 4.00
271 272 0.033504 CCGTAACAGACTGCTGGTGT 59.966 55.000 1.25 0.00 43.34 4.16
272 273 1.271379 CCGTAACAGACTGCTGGTGTA 59.729 52.381 1.25 0.00 43.34 2.90
273 274 2.094182 CCGTAACAGACTGCTGGTGTAT 60.094 50.000 1.25 0.00 43.34 2.29
274 275 3.179830 CGTAACAGACTGCTGGTGTATC 58.820 50.000 1.25 0.00 43.34 2.24
275 276 3.366985 CGTAACAGACTGCTGGTGTATCA 60.367 47.826 1.25 0.00 43.34 2.15
276 277 3.325293 AACAGACTGCTGGTGTATCAG 57.675 47.619 1.25 0.00 46.60 2.90
277 278 2.251818 ACAGACTGCTGGTGTATCAGT 58.748 47.619 1.25 0.00 46.60 3.41
279 280 2.301577 GACTGCTGGTGTATCAGTCC 57.698 55.000 9.70 0.00 46.56 3.85
280 281 0.532573 ACTGCTGGTGTATCAGTCCG 59.467 55.000 0.00 0.00 36.42 4.79
281 282 0.817654 CTGCTGGTGTATCAGTCCGA 59.182 55.000 0.00 0.00 37.12 4.55
283 284 1.831106 TGCTGGTGTATCAGTCCGAAT 59.169 47.619 0.00 0.00 37.12 3.34
285 286 2.418746 GCTGGTGTATCAGTCCGAATGT 60.419 50.000 0.00 0.00 37.12 2.71
287 288 2.167693 TGGTGTATCAGTCCGAATGTCC 59.832 50.000 0.00 0.00 0.00 4.02
288 289 2.167693 GGTGTATCAGTCCGAATGTCCA 59.832 50.000 0.00 0.00 0.00 4.02
290 291 2.159296 TGTATCAGTCCGAATGTCCACG 60.159 50.000 0.00 0.00 0.00 4.94
295 296 3.661911 CCGAATGTCCACGGCAAA 58.338 55.556 0.00 0.00 42.55 3.68
297 298 1.209127 CGAATGTCCACGGCAAACC 59.791 57.895 0.00 0.00 0.00 3.27
298 299 1.584495 GAATGTCCACGGCAAACCC 59.416 57.895 0.00 0.00 0.00 4.11
299 300 1.152652 AATGTCCACGGCAAACCCA 60.153 52.632 0.00 0.00 0.00 4.51
300 301 0.757188 AATGTCCACGGCAAACCCAA 60.757 50.000 0.00 0.00 0.00 4.12
301 302 1.460273 ATGTCCACGGCAAACCCAAC 61.460 55.000 0.00 0.00 0.00 3.77
304 305 2.727544 CACGGCAAACCCAACTGG 59.272 61.111 0.00 0.00 41.37 4.00
306 307 1.152830 ACGGCAAACCCAACTGGAT 59.847 52.632 0.00 0.00 37.39 3.41
307 308 0.469144 ACGGCAAACCCAACTGGATT 60.469 50.000 0.00 0.00 37.39 3.01
308 309 1.202952 ACGGCAAACCCAACTGGATTA 60.203 47.619 0.00 0.00 37.39 1.75
309 310 1.889829 CGGCAAACCCAACTGGATTAA 59.110 47.619 0.00 0.00 37.39 1.40
310 311 2.352323 CGGCAAACCCAACTGGATTAAC 60.352 50.000 0.00 0.00 37.39 2.01
314 315 4.038642 GCAAACCCAACTGGATTAACTGAA 59.961 41.667 0.00 0.00 37.39 3.02
315 316 5.528870 CAAACCCAACTGGATTAACTGAAC 58.471 41.667 0.00 0.00 37.39 3.18
317 318 2.747446 CCCAACTGGATTAACTGAACGG 59.253 50.000 0.00 0.00 37.39 4.44
318 319 3.558321 CCCAACTGGATTAACTGAACGGA 60.558 47.826 0.00 0.00 37.39 4.69
320 321 3.611766 ACTGGATTAACTGAACGGAGG 57.388 47.619 0.00 0.00 0.00 4.30
322 323 3.056035 ACTGGATTAACTGAACGGAGGTC 60.056 47.826 0.00 0.00 0.00 3.85
323 324 3.170717 TGGATTAACTGAACGGAGGTCT 58.829 45.455 0.00 0.00 0.00 3.85
324 325 3.056107 TGGATTAACTGAACGGAGGTCTG 60.056 47.826 0.00 0.00 0.00 3.51
325 326 3.056035 GGATTAACTGAACGGAGGTCTGT 60.056 47.826 0.00 0.00 36.96 3.41
327 328 0.680061 AACTGAACGGAGGTCTGTCC 59.320 55.000 0.00 0.00 33.61 4.02
335 336 2.990066 GGAGGTCTGTCCGATCAATT 57.010 50.000 0.00 0.00 41.99 2.32
338 339 1.825474 AGGTCTGTCCGATCAATTCGT 59.175 47.619 0.00 0.00 46.65 3.85
339 340 1.927174 GGTCTGTCCGATCAATTCGTG 59.073 52.381 0.00 0.00 46.65 4.35
340 341 1.927174 GTCTGTCCGATCAATTCGTGG 59.073 52.381 0.00 0.00 46.65 4.94
341 342 1.822371 TCTGTCCGATCAATTCGTGGA 59.178 47.619 0.00 0.00 46.65 4.02
343 344 0.931005 GTCCGATCAATTCGTGGAGC 59.069 55.000 0.00 0.00 46.65 4.70
344 345 0.179084 TCCGATCAATTCGTGGAGCC 60.179 55.000 0.00 0.00 46.65 4.70
345 346 1.160329 CCGATCAATTCGTGGAGCCC 61.160 60.000 0.00 0.00 46.65 5.19
346 347 0.461870 CGATCAATTCGTGGAGCCCA 60.462 55.000 0.00 0.00 43.01 5.36
347 348 1.303309 GATCAATTCGTGGAGCCCAG 58.697 55.000 0.00 0.00 32.34 4.45
348 349 0.620556 ATCAATTCGTGGAGCCCAGT 59.379 50.000 0.00 0.00 32.34 4.00
349 350 1.271856 TCAATTCGTGGAGCCCAGTA 58.728 50.000 0.00 0.00 32.34 2.74
350 351 1.626321 TCAATTCGTGGAGCCCAGTAA 59.374 47.619 0.00 0.00 32.34 2.24
351 352 1.737793 CAATTCGTGGAGCCCAGTAAC 59.262 52.381 0.00 0.00 32.34 2.50
352 353 0.981183 ATTCGTGGAGCCCAGTAACA 59.019 50.000 0.00 0.00 32.34 2.41
353 354 0.320374 TTCGTGGAGCCCAGTAACAG 59.680 55.000 0.00 0.00 32.34 3.16
354 355 0.830444 TCGTGGAGCCCAGTAACAGT 60.830 55.000 0.00 0.00 32.34 3.55
368 1570 0.977395 AACAGTGGGTAGAGAGCACC 59.023 55.000 0.00 0.00 35.15 5.01
375 1577 4.392166 TAGAGAGCACCCCGCCCA 62.392 66.667 0.00 0.00 44.04 5.36
377 1579 4.785453 GAGAGCACCCCGCCCAAG 62.785 72.222 0.00 0.00 44.04 3.61
392 1594 1.265236 CCAAGCAAAAGGCCACCATA 58.735 50.000 5.01 0.00 46.50 2.74
394 1596 1.617850 CAAGCAAAAGGCCACCATACA 59.382 47.619 5.01 0.00 46.50 2.29
437 1646 7.524294 AATCTGAAAACATGACACACAAAAC 57.476 32.000 0.00 0.00 0.00 2.43
438 1647 6.018589 TCTGAAAACATGACACACAAAACA 57.981 33.333 0.00 0.00 0.00 2.83
439 1648 6.629128 TCTGAAAACATGACACACAAAACAT 58.371 32.000 0.00 0.00 0.00 2.71
442 1651 8.179148 TGAAAACATGACACACAAAACATAAC 57.821 30.769 0.00 0.00 0.00 1.89
443 1652 6.804534 AAACATGACACACAAAACATAACG 57.195 33.333 0.00 0.00 0.00 3.18
444 1653 5.493133 ACATGACACACAAAACATAACGT 57.507 34.783 0.00 0.00 0.00 3.99
445 1654 6.606234 ACATGACACACAAAACATAACGTA 57.394 33.333 0.00 0.00 0.00 3.57
446 1655 6.655062 ACATGACACACAAAACATAACGTAG 58.345 36.000 0.00 0.00 0.00 3.51
518 1741 2.425773 GCACTGTGCACGCTTTCG 60.426 61.111 26.70 0.00 44.26 3.46
533 1773 3.908382 CGCTTTCGTCTTTCCATTTCTTG 59.092 43.478 0.00 0.00 0.00 3.02
539 1779 2.293399 GTCTTTCCATTTCTTGGCGTGT 59.707 45.455 0.00 0.00 46.01 4.49
544 1784 1.541147 CCATTTCTTGGCGTGTCATGT 59.459 47.619 0.00 0.00 39.09 3.21
553 1793 2.094906 TGGCGTGTCATGTACTGTACTC 60.095 50.000 17.98 7.52 0.00 2.59
554 1794 2.527100 GCGTGTCATGTACTGTACTCC 58.473 52.381 17.98 5.04 0.00 3.85
555 1795 2.734492 GCGTGTCATGTACTGTACTCCC 60.734 54.545 17.98 5.34 0.00 4.30
556 1796 2.753452 CGTGTCATGTACTGTACTCCCT 59.247 50.000 17.98 0.00 0.00 4.20
557 1797 3.181499 CGTGTCATGTACTGTACTCCCTC 60.181 52.174 17.98 6.64 0.00 4.30
558 1798 3.014623 TGTCATGTACTGTACTCCCTCG 58.985 50.000 17.98 2.10 0.00 4.63
559 1799 2.022195 TCATGTACTGTACTCCCTCGC 58.978 52.381 17.98 0.00 0.00 5.03
560 1800 1.749063 CATGTACTGTACTCCCTCGCA 59.251 52.381 17.98 0.00 0.00 5.10
561 1801 1.913778 TGTACTGTACTCCCTCGCAA 58.086 50.000 17.98 0.00 0.00 4.85
562 1802 2.241160 TGTACTGTACTCCCTCGCAAA 58.759 47.619 17.98 0.00 0.00 3.68
563 1803 2.629137 TGTACTGTACTCCCTCGCAAAA 59.371 45.455 17.98 0.00 0.00 2.44
564 1804 2.922740 ACTGTACTCCCTCGCAAAAA 57.077 45.000 0.00 0.00 0.00 1.94
1001 2241 1.221021 GCAACGGCCTAACCTAGCT 59.779 57.895 0.00 0.00 35.61 3.32
1003 2243 0.824759 CAACGGCCTAACCTAGCTCT 59.175 55.000 0.00 0.00 35.61 4.09
1008 2284 2.235891 GGCCTAACCTAGCTCTCTCTC 58.764 57.143 0.00 0.00 34.51 3.20
1015 2301 3.658725 ACCTAGCTCTCTCTCTCTCTCT 58.341 50.000 0.00 0.00 0.00 3.10
1016 2302 3.643792 ACCTAGCTCTCTCTCTCTCTCTC 59.356 52.174 0.00 0.00 0.00 3.20
1083 2369 2.647949 GGAGGAAGGGAGGGAGGGA 61.648 68.421 0.00 0.00 0.00 4.20
1084 2370 1.074850 GAGGAAGGGAGGGAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
1085 2371 2.040359 GGAAGGGAGGGAGGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
1086 2372 2.040359 GAAGGGAGGGAGGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
1087 2373 2.543637 AAGGGAGGGAGGGAGGGA 60.544 66.667 0.00 0.00 0.00 4.20
1088 2374 2.613576 GAAGGGAGGGAGGGAGGGAG 62.614 70.000 0.00 0.00 0.00 4.30
1089 2375 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1090 2376 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
1091 2377 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
1092 2378 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
1334 2620 1.552486 CCAGGTCCAGAAGGGTGAGTA 60.552 57.143 0.00 0.00 38.11 2.59
1335 2621 2.257207 CAGGTCCAGAAGGGTGAGTAA 58.743 52.381 0.00 0.00 38.11 2.24
1336 2622 2.637872 CAGGTCCAGAAGGGTGAGTAAA 59.362 50.000 0.00 0.00 38.11 2.01
1337 2623 3.072476 CAGGTCCAGAAGGGTGAGTAAAA 59.928 47.826 0.00 0.00 38.11 1.52
1339 2625 3.072622 GGTCCAGAAGGGTGAGTAAAAGT 59.927 47.826 0.00 0.00 38.11 2.66
1341 2627 4.755629 GTCCAGAAGGGTGAGTAAAAGTTC 59.244 45.833 0.00 0.00 38.11 3.01
1346 2632 0.794473 GGTGAGTAAAAGTTCCGCCG 59.206 55.000 0.00 0.00 0.00 6.46
1347 2633 0.165295 GTGAGTAAAAGTTCCGCCGC 59.835 55.000 0.00 0.00 0.00 6.53
1348 2634 0.034337 TGAGTAAAAGTTCCGCCGCT 59.966 50.000 0.00 0.00 0.00 5.52
1349 2635 0.442699 GAGTAAAAGTTCCGCCGCTG 59.557 55.000 0.00 0.00 0.00 5.18
1350 2636 0.953960 AGTAAAAGTTCCGCCGCTGG 60.954 55.000 0.00 0.00 0.00 4.85
1351 2637 2.329614 TAAAAGTTCCGCCGCTGGC 61.330 57.895 9.20 9.20 46.75 4.85
1368 2654 3.782443 CCTTAGCCGTCCCCGCTT 61.782 66.667 0.00 0.00 0.00 4.68
1369 2655 2.428925 CCTTAGCCGTCCCCGCTTA 61.429 63.158 0.00 0.00 0.00 3.09
1370 2656 1.067582 CTTAGCCGTCCCCGCTTAG 59.932 63.158 0.00 0.00 0.00 2.18
1371 2657 1.673808 CTTAGCCGTCCCCGCTTAGT 61.674 60.000 0.00 0.00 0.00 2.24
1372 2658 1.259840 TTAGCCGTCCCCGCTTAGTT 61.260 55.000 0.00 0.00 0.00 2.24
1478 2783 2.408022 GTATCGTGCGCCGTCTCT 59.592 61.111 16.00 5.01 37.94 3.10
1484 2789 3.760035 TGCGCCGTCTCTTCTCCC 61.760 66.667 4.18 0.00 0.00 4.30
1492 2797 0.461961 GTCTCTTCTCCCCGATGGTG 59.538 60.000 0.00 0.00 34.77 4.17
1518 2823 2.720915 AGAGGCCAATTCTCTCTTTGC 58.279 47.619 5.01 0.00 36.99 3.68
1520 2825 1.357079 AGGCCAATTCTCTCTTTGCCT 59.643 47.619 5.01 0.00 0.00 4.75
1522 2827 1.399791 GCCAATTCTCTCTTTGCCTCG 59.600 52.381 0.00 0.00 0.00 4.63
1533 2838 0.741915 TTTGCCTCGGGTGTGTTTTC 59.258 50.000 0.00 0.00 0.00 2.29
1534 2839 0.106918 TTGCCTCGGGTGTGTTTTCT 60.107 50.000 0.00 0.00 0.00 2.52
1536 2841 1.029681 GCCTCGGGTGTGTTTTCTTT 58.970 50.000 0.00 0.00 0.00 2.52
1537 2842 1.407618 GCCTCGGGTGTGTTTTCTTTT 59.592 47.619 0.00 0.00 0.00 2.27
1538 2843 2.159156 GCCTCGGGTGTGTTTTCTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
1539 2844 3.443976 CCTCGGGTGTGTTTTCTTTTTG 58.556 45.455 0.00 0.00 0.00 2.44
1540 2845 2.857748 CTCGGGTGTGTTTTCTTTTTGC 59.142 45.455 0.00 0.00 0.00 3.68
1541 2846 2.494073 TCGGGTGTGTTTTCTTTTTGCT 59.506 40.909 0.00 0.00 0.00 3.91
1542 2847 2.602660 CGGGTGTGTTTTCTTTTTGCTG 59.397 45.455 0.00 0.00 0.00 4.41
1543 2848 2.935849 GGGTGTGTTTTCTTTTTGCTGG 59.064 45.455 0.00 0.00 0.00 4.85
1544 2849 3.368948 GGGTGTGTTTTCTTTTTGCTGGA 60.369 43.478 0.00 0.00 0.00 3.86
1545 2850 3.616821 GGTGTGTTTTCTTTTTGCTGGAC 59.383 43.478 0.00 0.00 0.00 4.02
1546 2851 3.303229 GTGTGTTTTCTTTTTGCTGGACG 59.697 43.478 0.00 0.00 0.00 4.79
1547 2852 3.057174 TGTGTTTTCTTTTTGCTGGACGT 60.057 39.130 0.00 0.00 0.00 4.34
1554 2859 0.394938 TTTTGCTGGACGTAGCTGGA 59.605 50.000 11.40 0.00 44.01 3.86
1555 2860 0.320421 TTTGCTGGACGTAGCTGGAC 60.320 55.000 11.40 0.00 44.01 4.02
1560 2865 2.699954 CTGGACGTAGCTGGACAATTT 58.300 47.619 0.00 0.00 0.00 1.82
1564 2869 3.504863 GACGTAGCTGGACAATTTCGTA 58.495 45.455 0.00 0.00 0.00 3.43
1587 2892 0.598065 GCTGTTGCCTCCGAAATTGT 59.402 50.000 0.00 0.00 0.00 2.71
1590 2895 2.028130 TGTTGCCTCCGAAATTGTTGT 58.972 42.857 0.00 0.00 0.00 3.32
1604 2910 4.965119 ATTGTTGTCGGCTAGATTTTCC 57.035 40.909 0.00 0.00 0.00 3.13
1620 2926 5.543790 AGATTTTCCTTGCTAATTTGGGTGT 59.456 36.000 0.00 0.00 0.00 4.16
1624 2930 2.493278 CCTTGCTAATTTGGGTGTCCAG 59.507 50.000 0.00 0.00 45.04 3.86
1651 2957 7.230747 TCCTCATGGTTTTGACTTATTTCTCA 58.769 34.615 0.00 0.00 34.23 3.27
1657 2963 6.262273 TGGTTTTGACTTATTTCTCAGTGGAC 59.738 38.462 0.00 0.00 0.00 4.02
1661 2967 4.284490 TGACTTATTTCTCAGTGGACAGCT 59.716 41.667 0.00 0.00 0.00 4.24
1667 2973 0.108898 CTCAGTGGACAGCTTCTCCG 60.109 60.000 3.24 0.00 0.00 4.63
1715 3033 0.546122 TACCTAGCAATGTGGGCTGG 59.454 55.000 0.00 0.00 42.62 4.85
1719 3037 1.565390 TAGCAATGTGGGCTGGCTCT 61.565 55.000 0.00 0.00 42.62 4.09
1736 3054 3.876320 GGCTCTCAGATTCCACTCAAATC 59.124 47.826 0.00 0.00 34.08 2.17
1765 3083 2.618241 CTGGCTGTGAAACTTGTTGCTA 59.382 45.455 0.00 0.00 38.04 3.49
1812 3132 3.056465 GCTACTGGAGACTGCTACTTTGT 60.056 47.826 0.00 0.00 0.00 2.83
1832 3152 4.973168 TGTCAATCCCATACTCTAATGCC 58.027 43.478 0.00 0.00 0.00 4.40
1839 3159 2.486982 CCATACTCTAATGCCATGCTGC 59.513 50.000 0.00 0.00 0.00 5.25
1842 3196 1.441732 CTCTAATGCCATGCTGCGCA 61.442 55.000 10.98 10.98 44.86 6.09
1877 3231 5.355071 TGATCCATCCGAGAAAATCTTGTTG 59.645 40.000 0.00 0.00 0.00 3.33
1880 3234 5.945784 TCCATCCGAGAAAATCTTGTTGATT 59.054 36.000 0.00 0.00 46.49 2.57
1906 3260 3.435186 GTTCTGCAGCGGGGAAGC 61.435 66.667 9.47 0.00 37.41 3.86
2151 3505 1.227674 GGATTTCCTCATCGCGGCT 60.228 57.895 6.13 0.00 0.00 5.52
2212 3591 4.809691 GCCTGTAGGTAAATGGTTTGAGGT 60.810 45.833 0.00 0.00 37.57 3.85
2229 3609 8.050930 GGTTTGAGGTATATTTTGGGAGTTAGA 58.949 37.037 0.00 0.00 0.00 2.10
2249 3629 7.942341 AGTTAGAATGACTGTTTGGTTAATGGA 59.058 33.333 0.00 0.00 0.00 3.41
2254 3634 8.606040 AATGACTGTTTGGTTAATGGAATTTG 57.394 30.769 0.00 0.00 37.87 2.32
2312 3692 4.262249 GCAGTTCAGTAGAGGTGAGAGTTT 60.262 45.833 0.00 0.00 0.00 2.66
2316 3696 4.994282 TCAGTAGAGGTGAGAGTTTGGTA 58.006 43.478 0.00 0.00 0.00 3.25
2317 3697 5.010933 TCAGTAGAGGTGAGAGTTTGGTAG 58.989 45.833 0.00 0.00 0.00 3.18
2318 3698 4.158764 CAGTAGAGGTGAGAGTTTGGTAGG 59.841 50.000 0.00 0.00 0.00 3.18
2319 3699 3.261818 AGAGGTGAGAGTTTGGTAGGT 57.738 47.619 0.00 0.00 0.00 3.08
2320 3700 4.399483 AGAGGTGAGAGTTTGGTAGGTA 57.601 45.455 0.00 0.00 0.00 3.08
2321 3701 4.345854 AGAGGTGAGAGTTTGGTAGGTAG 58.654 47.826 0.00 0.00 0.00 3.18
2322 3702 3.442076 AGGTGAGAGTTTGGTAGGTAGG 58.558 50.000 0.00 0.00 0.00 3.18
2323 3703 3.077088 AGGTGAGAGTTTGGTAGGTAGGA 59.923 47.826 0.00 0.00 0.00 2.94
2343 3723 4.658901 AGGAAGGTAGGAAAACAAGAGTCA 59.341 41.667 0.00 0.00 0.00 3.41
2405 3786 4.878397 GCCACTTAGTTGTCTGCTTCATAT 59.122 41.667 0.00 0.00 0.00 1.78
2425 3806 8.760103 TCATATGTTCAAAATGACACATTTGG 57.240 30.769 9.88 7.64 37.19 3.28
2440 3821 3.255725 CATTTGGTGTGATCATTGGCAC 58.744 45.455 0.00 1.82 35.63 5.01
2441 3822 2.291209 TTGGTGTGATCATTGGCACT 57.709 45.000 12.37 0.00 36.05 4.40
2442 3823 1.536940 TGGTGTGATCATTGGCACTG 58.463 50.000 12.37 0.00 36.05 3.66
2443 3824 1.202915 TGGTGTGATCATTGGCACTGT 60.203 47.619 12.37 0.00 36.05 3.55
2444 3825 1.888512 GGTGTGATCATTGGCACTGTT 59.111 47.619 12.37 0.00 36.05 3.16
2445 3826 2.352030 GGTGTGATCATTGGCACTGTTG 60.352 50.000 12.37 0.00 36.05 3.33
2446 3827 1.887854 TGTGATCATTGGCACTGTTGG 59.112 47.619 0.00 0.00 36.05 3.77
2447 3828 2.161855 GTGATCATTGGCACTGTTGGA 58.838 47.619 0.00 0.00 32.44 3.53
2448 3829 2.095059 GTGATCATTGGCACTGTTGGAC 60.095 50.000 0.00 0.00 32.44 4.02
2449 3830 2.161855 GATCATTGGCACTGTTGGACA 58.838 47.619 4.67 0.00 0.00 4.02
2450 3831 2.064434 TCATTGGCACTGTTGGACAA 57.936 45.000 4.67 0.00 0.00 3.18
2451 3832 1.955778 TCATTGGCACTGTTGGACAAG 59.044 47.619 4.67 0.00 0.00 3.16
2452 3833 1.000060 CATTGGCACTGTTGGACAAGG 60.000 52.381 0.00 0.00 0.00 3.61
2453 3834 0.754957 TTGGCACTGTTGGACAAGGG 60.755 55.000 0.00 0.00 0.00 3.95
2454 3835 2.564721 GGCACTGTTGGACAAGGGC 61.565 63.158 0.00 0.00 0.00 5.19
2455 3836 1.827789 GCACTGTTGGACAAGGGCA 60.828 57.895 0.00 0.00 29.93 5.36
2485 3866 2.303890 GTTCCTTTCCTTCCCGTCCTTA 59.696 50.000 0.00 0.00 0.00 2.69
2487 3868 1.626825 CCTTTCCTTCCCGTCCTTACA 59.373 52.381 0.00 0.00 0.00 2.41
2494 3875 3.442625 CCTTCCCGTCCTTACATTTTTCC 59.557 47.826 0.00 0.00 0.00 3.13
2554 3935 9.152595 GGTACCACAAGACAAATGTTTTTAAAA 57.847 29.630 7.15 0.00 0.00 1.52
2583 3966 9.654663 GAATCTGAGTTGTACCTTATACAGTTT 57.345 33.333 0.00 0.00 0.00 2.66
2621 4006 6.350110 CCATGTAAAGTTAACCCTTGATGGTG 60.350 42.308 0.88 0.00 39.05 4.17
2647 4032 4.214332 GGATCTCAAGTGTTTCAGTCAACC 59.786 45.833 0.00 0.00 0.00 3.77
2659 4044 4.659111 TCAGTCAACCGAGTTTAGTCAA 57.341 40.909 0.00 0.00 0.00 3.18
2661 4046 5.607477 TCAGTCAACCGAGTTTAGTCAAAT 58.393 37.500 0.00 0.00 0.00 2.32
2669 4054 6.579865 ACCGAGTTTAGTCAAATATACTGGG 58.420 40.000 7.28 7.28 38.04 4.45
2718 4103 8.660373 GCAGAAGCATATAATACAATGTACTCC 58.340 37.037 0.00 0.00 41.58 3.85
2719 4104 9.155975 CAGAAGCATATAATACAATGTACTCCC 57.844 37.037 0.00 0.00 0.00 4.30
2720 4105 9.105844 AGAAGCATATAATACAATGTACTCCCT 57.894 33.333 0.00 0.00 0.00 4.20
2721 4106 9.372369 GAAGCATATAATACAATGTACTCCCTC 57.628 37.037 0.00 0.00 0.00 4.30
2722 4107 7.852263 AGCATATAATACAATGTACTCCCTCC 58.148 38.462 0.00 0.00 0.00 4.30
2723 4108 6.757010 GCATATAATACAATGTACTCCCTCCG 59.243 42.308 0.00 0.00 0.00 4.63
2724 4109 7.578955 GCATATAATACAATGTACTCCCTCCGT 60.579 40.741 0.00 0.00 0.00 4.69
2725 4110 6.742559 ATAATACAATGTACTCCCTCCGTT 57.257 37.500 0.00 0.00 0.00 4.44
2726 4111 4.667519 ATACAATGTACTCCCTCCGTTC 57.332 45.455 0.00 0.00 0.00 3.95
2727 4112 2.253610 ACAATGTACTCCCTCCGTTCA 58.746 47.619 0.00 0.00 0.00 3.18
2728 4113 2.028385 ACAATGTACTCCCTCCGTTCAC 60.028 50.000 0.00 0.00 0.00 3.18
2729 4114 1.933021 ATGTACTCCCTCCGTTCACA 58.067 50.000 0.00 0.00 0.00 3.58
2730 4115 1.707106 TGTACTCCCTCCGTTCACAA 58.293 50.000 0.00 0.00 0.00 3.33
2731 4116 2.040939 TGTACTCCCTCCGTTCACAAA 58.959 47.619 0.00 0.00 0.00 2.83
2732 4117 2.635915 TGTACTCCCTCCGTTCACAAAT 59.364 45.455 0.00 0.00 0.00 2.32
2733 4118 3.833650 TGTACTCCCTCCGTTCACAAATA 59.166 43.478 0.00 0.00 0.00 1.40
2734 4119 4.468510 TGTACTCCCTCCGTTCACAAATAT 59.531 41.667 0.00 0.00 0.00 1.28
2735 4120 5.657745 TGTACTCCCTCCGTTCACAAATATA 59.342 40.000 0.00 0.00 0.00 0.86
2736 4121 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
2737 4122 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
2738 4123 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
2739 4124 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
2740 4125 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
2741 4126 6.055588 CCCTCCGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
2742 4127 6.542370 CCCTCCGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
2743 4128 7.254795 CCCTCCGTTCACAAATATAAGATGTTC 60.255 40.741 0.00 0.00 0.00 3.18
2744 4129 7.495934 CCTCCGTTCACAAATATAAGATGTTCT 59.504 37.037 0.00 0.00 0.00 3.01
2745 4130 8.196802 TCCGTTCACAAATATAAGATGTTCTG 57.803 34.615 0.00 0.00 0.00 3.02
2746 4131 8.038351 TCCGTTCACAAATATAAGATGTTCTGA 58.962 33.333 0.00 0.00 0.00 3.27
2747 4132 8.116753 CCGTTCACAAATATAAGATGTTCTGAC 58.883 37.037 0.00 0.00 0.00 3.51
2748 4133 8.873830 CGTTCACAAATATAAGATGTTCTGACT 58.126 33.333 0.00 0.00 0.00 3.41
2802 4187 8.592105 CATTTTAATGTGTTTGGTCACTCATT 57.408 30.769 6.42 6.42 41.48 2.57
2803 4188 9.044150 CATTTTAATGTGTTTGGTCACTCATTT 57.956 29.630 6.47 0.00 40.01 2.32
2804 4189 8.641499 TTTTAATGTGTTTGGTCACTCATTTC 57.359 30.769 6.47 0.00 40.01 2.17
2805 4190 5.850557 AATGTGTTTGGTCACTCATTTCA 57.149 34.783 0.00 0.00 37.51 2.69
2806 4191 4.898829 TGTGTTTGGTCACTCATTTCAG 57.101 40.909 0.00 0.00 38.90 3.02
2807 4192 4.269183 TGTGTTTGGTCACTCATTTCAGT 58.731 39.130 0.00 0.00 38.90 3.41
2808 4193 4.335315 TGTGTTTGGTCACTCATTTCAGTC 59.665 41.667 0.00 0.00 38.90 3.51
2809 4194 3.882888 TGTTTGGTCACTCATTTCAGTCC 59.117 43.478 0.00 0.00 0.00 3.85
2810 4195 2.455674 TGGTCACTCATTTCAGTCCG 57.544 50.000 0.00 0.00 0.00 4.79
2811 4196 1.079503 GGTCACTCATTTCAGTCCGC 58.920 55.000 0.00 0.00 0.00 5.54
2812 4197 1.608025 GGTCACTCATTTCAGTCCGCA 60.608 52.381 0.00 0.00 0.00 5.69
2813 4198 2.350522 GTCACTCATTTCAGTCCGCAT 58.649 47.619 0.00 0.00 0.00 4.73
2814 4199 2.094894 GTCACTCATTTCAGTCCGCATG 59.905 50.000 0.00 0.00 0.00 4.06
2815 4200 2.079158 CACTCATTTCAGTCCGCATGT 58.921 47.619 0.00 0.00 0.00 3.21
2816 4201 3.056179 TCACTCATTTCAGTCCGCATGTA 60.056 43.478 0.00 0.00 0.00 2.29
2817 4202 3.308053 CACTCATTTCAGTCCGCATGTAG 59.692 47.826 0.00 0.00 0.00 2.74
2818 4203 3.055819 ACTCATTTCAGTCCGCATGTAGT 60.056 43.478 0.00 0.00 0.00 2.73
2819 4204 3.521560 TCATTTCAGTCCGCATGTAGTC 58.478 45.455 0.00 0.00 0.00 2.59
2820 4205 2.380084 TTTCAGTCCGCATGTAGTCC 57.620 50.000 0.00 0.00 0.00 3.85
2821 4206 1.262417 TTCAGTCCGCATGTAGTCCA 58.738 50.000 0.00 0.00 0.00 4.02
2822 4207 1.485124 TCAGTCCGCATGTAGTCCAT 58.515 50.000 0.00 0.00 0.00 3.41
2823 4208 2.661718 TCAGTCCGCATGTAGTCCATA 58.338 47.619 0.00 0.00 30.71 2.74
2824 4209 3.230976 TCAGTCCGCATGTAGTCCATAT 58.769 45.455 0.00 0.00 30.71 1.78
2825 4210 3.641436 TCAGTCCGCATGTAGTCCATATT 59.359 43.478 0.00 0.00 30.71 1.28
2826 4211 3.742882 CAGTCCGCATGTAGTCCATATTG 59.257 47.826 0.00 0.00 30.71 1.90
2827 4212 3.641436 AGTCCGCATGTAGTCCATATTGA 59.359 43.478 0.00 0.00 30.71 2.57
2828 4213 4.100963 AGTCCGCATGTAGTCCATATTGAA 59.899 41.667 0.00 0.00 30.71 2.69
2829 4214 4.814234 GTCCGCATGTAGTCCATATTGAAA 59.186 41.667 0.00 0.00 30.71 2.69
2830 4215 5.470098 GTCCGCATGTAGTCCATATTGAAAT 59.530 40.000 0.00 0.00 30.71 2.17
2831 4216 6.649141 GTCCGCATGTAGTCCATATTGAAATA 59.351 38.462 0.00 0.00 30.71 1.40
2832 4217 7.334421 GTCCGCATGTAGTCCATATTGAAATAT 59.666 37.037 0.00 0.00 30.71 1.28
2833 4218 7.549134 TCCGCATGTAGTCCATATTGAAATATC 59.451 37.037 0.00 0.00 30.71 1.63
2834 4219 7.201644 CCGCATGTAGTCCATATTGAAATATCC 60.202 40.741 0.00 0.00 30.71 2.59
2835 4220 7.334171 CGCATGTAGTCCATATTGAAATATCCA 59.666 37.037 0.00 0.00 30.71 3.41
2836 4221 9.013229 GCATGTAGTCCATATTGAAATATCCAA 57.987 33.333 0.00 0.00 30.71 3.53
2862 4247 9.699410 AAACATCTTATATTTGTGAATGGAGGA 57.301 29.630 0.00 0.00 0.00 3.71
2863 4248 9.699410 AACATCTTATATTTGTGAATGGAGGAA 57.301 29.630 0.00 0.00 0.00 3.36
2864 4249 9.347240 ACATCTTATATTTGTGAATGGAGGAAG 57.653 33.333 0.00 0.00 0.00 3.46
2865 4250 9.347240 CATCTTATATTTGTGAATGGAGGAAGT 57.653 33.333 0.00 0.00 0.00 3.01
2867 4252 9.832445 TCTTATATTTGTGAATGGAGGAAGTAC 57.168 33.333 0.00 0.00 0.00 2.73
2868 4253 9.613428 CTTATATTTGTGAATGGAGGAAGTACA 57.387 33.333 0.00 0.00 0.00 2.90
2870 4255 8.682936 ATATTTGTGAATGGAGGAAGTACATC 57.317 34.615 0.00 0.00 0.00 3.06
2891 4276 6.830838 ACATCCTCAATAAACAATCTCTTCCC 59.169 38.462 0.00 0.00 0.00 3.97
2912 4297 7.938140 TCCCTGAAGAATAATGTTTTGTAGG 57.062 36.000 0.00 0.00 0.00 3.18
2916 4301 8.956426 CCTGAAGAATAATGTTTTGTAGGCTAA 58.044 33.333 0.00 0.00 0.00 3.09
2917 4302 9.994432 CTGAAGAATAATGTTTTGTAGGCTAAG 57.006 33.333 0.00 0.00 0.00 2.18
2919 4304 8.879427 AAGAATAATGTTTTGTAGGCTAAGGT 57.121 30.769 0.00 0.00 0.00 3.50
2920 4305 9.969001 AAGAATAATGTTTTGTAGGCTAAGGTA 57.031 29.630 0.00 0.00 0.00 3.08
2921 4306 9.969001 AGAATAATGTTTTGTAGGCTAAGGTAA 57.031 29.630 0.00 0.00 0.00 2.85
2925 4310 8.644374 AATGTTTTGTAGGCTAAGGTAAATCA 57.356 30.769 0.00 2.65 0.00 2.57
2926 4311 8.823220 ATGTTTTGTAGGCTAAGGTAAATCAT 57.177 30.769 0.00 4.65 0.00 2.45
2928 4313 9.742144 TGTTTTGTAGGCTAAGGTAAATCATTA 57.258 29.630 0.00 0.00 0.00 1.90
2929 4314 9.999009 GTTTTGTAGGCTAAGGTAAATCATTAC 57.001 33.333 0.00 0.00 40.60 1.89
2930 4315 9.969001 TTTTGTAGGCTAAGGTAAATCATTACT 57.031 29.630 0.00 0.00 41.01 2.24
2961 4348 3.508402 TCAGTGTAGGCGACAATTCAGTA 59.492 43.478 0.85 0.00 40.66 2.74
3012 4399 4.400567 GGCAACTGAATCTCCTTATTGCTT 59.599 41.667 6.07 0.00 40.55 3.91
3013 4400 5.449725 GGCAACTGAATCTCCTTATTGCTTC 60.450 44.000 6.07 0.00 40.55 3.86
3014 4401 5.124457 GCAACTGAATCTCCTTATTGCTTCA 59.876 40.000 0.00 0.00 38.30 3.02
3015 4402 6.677431 GCAACTGAATCTCCTTATTGCTTCAG 60.677 42.308 8.19 8.19 43.17 3.02
3056 4674 1.333619 TCAGCTTCAGGCGTTGAAAAC 59.666 47.619 6.09 2.62 44.84 2.43
3081 4699 9.066892 ACATTCTTATAACTTCAGAACAGCAAA 57.933 29.630 0.00 0.00 29.36 3.68
3084 4702 6.655003 TCTTATAACTTCAGAACAGCAAAGGG 59.345 38.462 0.00 0.00 0.00 3.95
3085 4703 3.297134 AACTTCAGAACAGCAAAGGGA 57.703 42.857 0.00 0.00 0.00 4.20
3086 4704 3.297134 ACTTCAGAACAGCAAAGGGAA 57.703 42.857 0.00 0.00 0.00 3.97
3087 4705 3.217626 ACTTCAGAACAGCAAAGGGAAG 58.782 45.455 0.00 0.00 37.04 3.46
3088 4706 1.609208 TCAGAACAGCAAAGGGAAGC 58.391 50.000 0.00 0.00 0.00 3.86
3089 4707 0.239347 CAGAACAGCAAAGGGAAGCG 59.761 55.000 0.00 0.00 35.48 4.68
3090 4708 1.081175 GAACAGCAAAGGGAAGCGC 60.081 57.895 0.00 0.00 35.48 5.92
3091 4709 1.795170 GAACAGCAAAGGGAAGCGCA 61.795 55.000 11.47 0.00 35.48 6.09
3122 4741 2.158871 TCGTTTAACCACTGAACCAGCT 60.159 45.455 0.00 0.00 34.37 4.24
3131 4750 4.020662 ACCACTGAACCAGCTTTTGAAAAA 60.021 37.500 0.00 0.00 34.37 1.94
3132 4751 5.118286 CCACTGAACCAGCTTTTGAAAAAT 58.882 37.500 0.00 0.00 34.37 1.82
3133 4752 5.585844 CCACTGAACCAGCTTTTGAAAAATT 59.414 36.000 0.00 0.00 34.37 1.82
3134 4753 6.457257 CCACTGAACCAGCTTTTGAAAAATTG 60.457 38.462 0.00 0.00 34.37 2.32
3311 4930 6.669125 TCAATGGTTTTCAAATCCAGTGAT 57.331 33.333 21.21 0.00 46.42 3.06
3404 5023 1.747206 GCCAGCGACACCTATCCAAAT 60.747 52.381 0.00 0.00 0.00 2.32
3607 5226 2.324860 GGTTTGCATGAACTAAACCGC 58.675 47.619 14.37 0.00 42.51 5.68
3670 5293 8.750298 TCTCTTTCTTACAAGGATAAGTACCTG 58.250 37.037 0.00 0.00 37.85 4.00
3863 5486 6.811253 AGCGGTATGTTGAAATTTCTGTTA 57.189 33.333 18.64 4.01 0.00 2.41
3915 5546 4.584325 GGATGCTTTATGCTTTATGGGTGA 59.416 41.667 0.00 0.00 43.37 4.02
4003 5641 6.763135 TCATGCATACTTCCATAGTTTCACTC 59.237 38.462 0.00 0.00 38.33 3.51
4017 5655 5.360591 AGTTTCACTCGATCATGGTATTCC 58.639 41.667 0.00 0.00 0.00 3.01
4132 5770 0.587768 TGACATCACAAACAGCTGCG 59.412 50.000 15.27 5.12 0.00 5.18
4150 5788 1.230635 CGGTGGAGTGCAGTGGAAAG 61.231 60.000 0.00 0.00 0.00 2.62
4205 5843 6.856938 CGCTATATCACAGGTGAACTAAGTAC 59.143 42.308 6.17 0.00 43.58 2.73
4219 5857 7.218204 GTGAACTAAGTACAAACTTGCAAACTG 59.782 37.037 0.00 0.39 45.63 3.16
4279 5918 2.254546 AACCATCTTGCTGTTGACGA 57.745 45.000 0.00 0.00 0.00 4.20
4288 5927 4.215185 TCTTGCTGTTGACGATTAATTGCA 59.785 37.500 2.34 0.00 0.00 4.08
4289 5928 4.700268 TGCTGTTGACGATTAATTGCAT 57.300 36.364 2.34 0.00 0.00 3.96
4290 5929 5.809719 TGCTGTTGACGATTAATTGCATA 57.190 34.783 2.34 0.00 0.00 3.14
4294 5933 7.758980 TGCTGTTGACGATTAATTGCATATTTT 59.241 29.630 2.34 0.00 0.00 1.82
4311 5957 6.500910 CATATTTTATCATGATCCATGGGCG 58.499 40.000 12.53 0.00 41.66 6.13
4313 5959 0.391528 TATCATGATCCATGGGCGCG 60.392 55.000 12.53 0.00 41.66 6.86
4322 5968 3.395702 ATGGGCGCGTTAGGGACA 61.396 61.111 8.43 0.00 40.61 4.02
4335 5981 0.759436 AGGGACACCACGTCTGTCTT 60.759 55.000 18.10 8.09 44.70 3.01
4336 5982 0.106149 GGGACACCACGTCTGTCTTT 59.894 55.000 18.10 0.00 44.70 2.52
4337 5983 1.499049 GGACACCACGTCTGTCTTTC 58.501 55.000 18.10 3.46 44.70 2.62
4338 5984 1.202486 GGACACCACGTCTGTCTTTCA 60.202 52.381 18.10 0.00 44.70 2.69
4344 5990 3.997021 ACCACGTCTGTCTTTCATTCATC 59.003 43.478 0.00 0.00 0.00 2.92
4347 5993 5.446875 CCACGTCTGTCTTTCATTCATCATG 60.447 44.000 0.00 0.00 0.00 3.07
4352 5998 7.459486 GTCTGTCTTTCATTCATCATGTGTAC 58.541 38.462 0.00 0.00 34.06 2.90
4379 6029 9.778741 TGAAGGGTGTATGTATCTGATTTATTC 57.221 33.333 0.00 0.00 0.00 1.75
4464 6114 1.002544 GTGGGATATGGGAGCAGCTAC 59.997 57.143 0.00 0.00 0.00 3.58
4713 6363 3.718210 GACCACCTCGTCCATCGCC 62.718 68.421 0.00 0.00 39.67 5.54
4747 6397 2.411904 AGAGCTCTTTCTCAAGCAACG 58.588 47.619 11.45 0.00 41.06 4.10
4821 6472 0.934496 TTTTTGCTCGAGTGACGGTG 59.066 50.000 15.13 0.00 42.82 4.94
4834 6485 4.459331 CGGTGAATGCGCAACCCG 62.459 66.667 21.09 20.81 40.75 5.28
4841 6492 3.958147 ATGCGCAACCCGGTGAGAG 62.958 63.158 17.11 0.00 37.44 3.20
4870 6521 3.689161 CAGATTTGTTCATTGGCCGTCTA 59.311 43.478 0.00 0.00 0.00 2.59
4871 6522 4.155826 CAGATTTGTTCATTGGCCGTCTAA 59.844 41.667 0.00 0.00 0.00 2.10
4879 6531 5.818678 TCATTGGCCGTCTAATATTAGGT 57.181 39.130 19.98 0.00 0.00 3.08
4882 6534 2.635915 TGGCCGTCTAATATTAGGTGGG 59.364 50.000 23.78 20.26 0.00 4.61
4883 6535 2.636403 GGCCGTCTAATATTAGGTGGGT 59.364 50.000 23.78 0.00 0.00 4.51
4884 6536 3.834231 GGCCGTCTAATATTAGGTGGGTA 59.166 47.826 23.78 5.89 0.00 3.69
4930 6582 8.283291 GCCACATTACTCTTGCTTGTATAATAC 58.717 37.037 0.00 0.00 0.00 1.89
4931 6583 9.325198 CCACATTACTCTTGCTTGTATAATACA 57.675 33.333 0.00 0.00 36.79 2.29
4983 6635 1.985159 TCCTATCTGGTTTGCTGGTGT 59.015 47.619 0.00 0.00 37.07 4.16
4984 6636 3.178046 TCCTATCTGGTTTGCTGGTGTA 58.822 45.455 0.00 0.00 37.07 2.90
4985 6637 3.055385 TCCTATCTGGTTTGCTGGTGTAC 60.055 47.826 0.00 0.00 37.07 2.90
4986 6638 2.200373 ATCTGGTTTGCTGGTGTACC 57.800 50.000 0.00 0.00 0.00 3.34
4987 6639 0.250124 TCTGGTTTGCTGGTGTACCG 60.250 55.000 0.00 0.00 39.43 4.02
5093 6752 1.470098 GTCTGTGTAATGGCTTGCCAG 59.530 52.381 19.53 4.64 0.00 4.85
5103 6762 0.895100 GGCTTGCCAGTGGAACATGA 60.895 55.000 15.20 0.00 44.52 3.07
5104 6763 0.961019 GCTTGCCAGTGGAACATGAA 59.039 50.000 15.20 0.00 44.52 2.57
5105 6764 1.336240 GCTTGCCAGTGGAACATGAAC 60.336 52.381 15.20 0.00 44.52 3.18
5106 6765 1.955778 CTTGCCAGTGGAACATGAACA 59.044 47.619 15.20 0.00 44.52 3.18
5107 6766 2.291209 TGCCAGTGGAACATGAACAT 57.709 45.000 15.20 0.00 44.52 2.71
5108 6767 1.887854 TGCCAGTGGAACATGAACATG 59.112 47.619 15.20 12.43 44.52 3.21
5120 6779 6.405065 GGAACATGAACATGCATACATTCACT 60.405 38.462 17.69 9.08 42.39 3.41
5146 7328 6.771076 TGTATGCGCAATTCTTTTACAGTAG 58.229 36.000 17.11 0.00 0.00 2.57
5147 7329 5.880054 ATGCGCAATTCTTTTACAGTAGT 57.120 34.783 17.11 0.00 0.00 2.73
5148 7330 6.978343 ATGCGCAATTCTTTTACAGTAGTA 57.022 33.333 17.11 0.00 0.00 1.82
5149 7331 6.160664 TGCGCAATTCTTTTACAGTAGTAC 57.839 37.500 8.16 0.00 0.00 2.73
5150 7332 5.697178 TGCGCAATTCTTTTACAGTAGTACA 59.303 36.000 8.16 0.00 0.00 2.90
5151 7333 6.203145 TGCGCAATTCTTTTACAGTAGTACAA 59.797 34.615 8.16 0.00 0.00 2.41
5193 7375 2.047844 CCTGTCGAGTGTGCAGGG 60.048 66.667 10.44 0.00 44.36 4.45
5194 7376 2.047844 CTGTCGAGTGTGCAGGGG 60.048 66.667 0.00 0.00 0.00 4.79
5200 7382 0.593128 CGAGTGTGCAGGGGAAAAAG 59.407 55.000 0.00 0.00 0.00 2.27
5211 7393 1.276138 GGGGAAAAAGAAGGCATGGTG 59.724 52.381 0.00 0.00 0.00 4.17
5237 7424 3.487711 GGTCTAGTGTACAGCGTGATGAG 60.488 52.174 0.00 0.00 0.00 2.90
5249 7436 1.003866 CGTGATGAGCAGCATGTGATG 60.004 52.381 0.00 0.00 37.34 3.07
5250 7437 2.014857 GTGATGAGCAGCATGTGATGT 58.985 47.619 0.00 0.00 37.34 3.06
5251 7438 2.014128 TGATGAGCAGCATGTGATGTG 58.986 47.619 0.00 0.00 37.34 3.21
5252 7439 2.285977 GATGAGCAGCATGTGATGTGA 58.714 47.619 0.00 0.00 37.34 3.58
5253 7440 2.413310 TGAGCAGCATGTGATGTGAT 57.587 45.000 0.00 0.00 39.31 3.06
5261 7448 5.620654 GCAGCATGTGATGTGATTAGTGTTT 60.621 40.000 0.00 0.00 39.31 2.83
5393 7580 7.656542 TGCTAATCATCATCTCTCTGCTTTTAG 59.343 37.037 0.00 0.00 0.00 1.85
5445 7644 8.911247 AATTCGTGCTTTATGGAATTAAAGAC 57.089 30.769 7.87 3.62 40.20 3.01
5468 7680 7.013369 AGACTGAATCCCACAAAAGAAAACTAC 59.987 37.037 0.00 0.00 0.00 2.73
5549 7846 2.433662 ACTACTCCCTCCGTTCCTAC 57.566 55.000 0.00 0.00 0.00 3.18
5557 7863 3.516700 TCCCTCCGTTCCTACTTTTTAGG 59.483 47.826 0.00 0.00 36.06 2.69
5559 7865 3.516700 CCTCCGTTCCTACTTTTTAGGGA 59.483 47.826 0.00 0.00 35.45 4.20
5562 7868 5.737860 TCCGTTCCTACTTTTTAGGGATTC 58.262 41.667 0.00 0.00 35.45 2.52
5580 7886 8.792830 AGGGATTCCACTACAAACTACATATA 57.207 34.615 4.80 0.00 34.83 0.86
5620 7932 5.057149 AGTGTAGATTCACTCGTTTTGCTT 58.943 37.500 0.00 0.00 44.07 3.91
5629 7941 2.157668 ACTCGTTTTGCTTCGCATGTAG 59.842 45.455 0.00 0.00 38.76 2.74
5631 7943 2.546368 TCGTTTTGCTTCGCATGTAGTT 59.454 40.909 0.00 0.00 38.76 2.24
5758 8070 5.737353 GCAGTTGCAACTCCATTTAAAAAC 58.263 37.500 28.97 0.00 41.59 2.43
5828 8143 7.033791 TGGCTTAAATAGACTCTTACGAACAG 58.966 38.462 0.00 0.00 30.89 3.16
5866 8182 5.075493 AGAGACTTGGCTTTTGATGTCATT 58.925 37.500 0.00 0.00 0.00 2.57
5867 8183 5.537674 AGAGACTTGGCTTTTGATGTCATTT 59.462 36.000 0.00 0.00 0.00 2.32
5868 8184 6.716628 AGAGACTTGGCTTTTGATGTCATTTA 59.283 34.615 0.00 0.00 0.00 1.40
5869 8185 7.231317 AGAGACTTGGCTTTTGATGTCATTTAA 59.769 33.333 0.00 0.00 0.00 1.52
5870 8186 7.725251 AGACTTGGCTTTTGATGTCATTTAAA 58.275 30.769 0.00 0.00 0.00 1.52
5871 8187 8.203485 AGACTTGGCTTTTGATGTCATTTAAAA 58.797 29.630 0.00 8.01 0.00 1.52
5929 8245 7.497925 AGAGTGGAGAACAAAACAATAACTC 57.502 36.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.888512 GTGGCCACACACTCATCAATT 59.111 47.619 31.23 0.00 46.90 2.32
1 2 1.538047 GTGGCCACACACTCATCAAT 58.462 50.000 31.23 0.00 46.90 2.57
2 3 3.019964 GTGGCCACACACTCATCAA 57.980 52.632 31.23 0.00 46.90 2.57
3 4 4.798433 GTGGCCACACACTCATCA 57.202 55.556 31.23 0.00 46.90 3.07
11 12 1.153429 GGGTATCTCGTGGCCACAC 60.153 63.158 34.16 23.46 44.23 3.82
12 13 2.363975 GGGGTATCTCGTGGCCACA 61.364 63.158 34.16 20.21 0.00 4.17
13 14 1.906105 TTGGGGTATCTCGTGGCCAC 61.906 60.000 26.78 26.78 0.00 5.01
14 15 1.613928 TTGGGGTATCTCGTGGCCA 60.614 57.895 0.00 0.00 0.00 5.36
15 16 1.146263 CTTGGGGTATCTCGTGGCC 59.854 63.158 0.00 0.00 0.00 5.36
16 17 0.462047 CACTTGGGGTATCTCGTGGC 60.462 60.000 0.00 0.00 0.00 5.01
17 18 0.462047 GCACTTGGGGTATCTCGTGG 60.462 60.000 0.00 0.00 0.00 4.94
18 19 0.249120 TGCACTTGGGGTATCTCGTG 59.751 55.000 0.00 0.00 0.00 4.35
19 20 0.537188 CTGCACTTGGGGTATCTCGT 59.463 55.000 0.00 0.00 0.00 4.18
20 21 0.179073 CCTGCACTTGGGGTATCTCG 60.179 60.000 0.00 0.00 0.00 4.04
21 22 0.464554 GCCTGCACTTGGGGTATCTC 60.465 60.000 0.00 0.00 0.00 2.75
28 29 3.297620 GGTGTGCCTGCACTTGGG 61.298 66.667 21.62 0.00 46.30 4.12
36 37 4.394712 GGTCTCCGGGTGTGCCTG 62.395 72.222 0.00 0.00 40.89 4.85
37 38 4.640690 AGGTCTCCGGGTGTGCCT 62.641 66.667 0.00 5.18 34.45 4.75
38 39 4.083862 GAGGTCTCCGGGTGTGCC 62.084 72.222 0.00 2.96 0.00 5.01
58 59 3.642741 ATTCCCTCCCCGGTGAGCT 62.643 63.158 8.66 0.00 0.00 4.09
59 60 3.090532 ATTCCCTCCCCGGTGAGC 61.091 66.667 8.66 0.00 0.00 4.26
61 62 2.762459 CGATTCCCTCCCCGGTGA 60.762 66.667 0.00 0.00 0.00 4.02
62 63 3.081409 ACGATTCCCTCCCCGGTG 61.081 66.667 0.00 0.00 0.00 4.94
63 64 2.762875 GACGATTCCCTCCCCGGT 60.763 66.667 0.00 0.00 0.00 5.28
65 66 1.455959 AGAGACGATTCCCTCCCCG 60.456 63.158 0.00 0.00 0.00 5.73
66 67 1.403687 CCAGAGACGATTCCCTCCCC 61.404 65.000 0.00 0.00 0.00 4.81
67 68 1.403687 CCCAGAGACGATTCCCTCCC 61.404 65.000 0.00 0.00 0.00 4.30
68 69 0.688087 ACCCAGAGACGATTCCCTCC 60.688 60.000 0.00 0.00 0.00 4.30
69 70 0.747852 GACCCAGAGACGATTCCCTC 59.252 60.000 0.00 0.00 0.00 4.30
70 71 0.041238 TGACCCAGAGACGATTCCCT 59.959 55.000 0.00 0.00 0.00 4.20
74 75 1.406069 GCATGTGACCCAGAGACGATT 60.406 52.381 0.00 0.00 0.00 3.34
78 79 0.901124 AGAGCATGTGACCCAGAGAC 59.099 55.000 0.00 0.00 0.00 3.36
108 109 1.842720 TATCCGTGCCGATAACGTTG 58.157 50.000 11.99 0.00 39.38 4.10
145 146 2.732289 GGCTGAGGAGGCACAAAAA 58.268 52.632 0.00 0.00 44.34 1.94
146 147 4.500265 GGCTGAGGAGGCACAAAA 57.500 55.556 0.00 0.00 44.34 2.44
176 177 3.181483 CGATGGAGTGTCATGACTCATGA 60.181 47.826 25.55 16.44 46.84 3.07
177 178 3.121544 CGATGGAGTGTCATGACTCATG 58.878 50.000 25.55 12.25 43.70 3.07
178 179 2.482664 GCGATGGAGTGTCATGACTCAT 60.483 50.000 25.55 20.85 43.70 2.90
179 180 1.134995 GCGATGGAGTGTCATGACTCA 60.135 52.381 25.55 17.65 43.70 3.41
180 181 1.135915 AGCGATGGAGTGTCATGACTC 59.864 52.381 25.55 21.74 41.55 3.36
181 182 1.189752 AGCGATGGAGTGTCATGACT 58.810 50.000 25.55 7.38 0.00 3.41
182 183 2.464865 GTAGCGATGGAGTGTCATGAC 58.535 52.381 19.27 19.27 0.00 3.06
196 197 2.224281 CCAATCCAGCATTAGGTAGCGA 60.224 50.000 0.00 0.00 35.48 4.93
200 201 3.007940 CCGATCCAATCCAGCATTAGGTA 59.992 47.826 0.00 0.00 0.00 3.08
233 234 3.127533 GCTGGGCAGGCTGTTACG 61.128 66.667 17.16 4.13 0.00 3.18
249 250 1.741770 CAGCAGTCTGTTACGGGGC 60.742 63.158 0.93 0.00 35.61 5.80
262 263 0.817654 TCGGACTGATACACCAGCAG 59.182 55.000 0.00 0.00 46.47 4.24
267 268 2.167693 TGGACATTCGGACTGATACACC 59.832 50.000 2.06 0.00 0.00 4.16
268 269 3.187700 GTGGACATTCGGACTGATACAC 58.812 50.000 2.06 4.69 0.00 2.90
269 270 2.159296 CGTGGACATTCGGACTGATACA 60.159 50.000 2.06 0.00 0.00 2.29
271 272 2.863401 CGTGGACATTCGGACTGATA 57.137 50.000 2.06 0.00 0.00 2.15
272 273 3.741029 CGTGGACATTCGGACTGAT 57.259 52.632 2.06 0.00 0.00 2.90
279 280 1.209127 GGTTTGCCGTGGACATTCG 59.791 57.895 0.00 0.00 0.00 3.34
280 281 1.175983 TGGGTTTGCCGTGGACATTC 61.176 55.000 0.00 0.00 34.97 2.67
281 282 0.757188 TTGGGTTTGCCGTGGACATT 60.757 50.000 0.00 0.00 34.97 2.71
283 284 2.122167 GTTGGGTTTGCCGTGGACA 61.122 57.895 0.00 0.00 34.97 4.02
285 286 1.826054 CAGTTGGGTTTGCCGTGGA 60.826 57.895 0.00 0.00 34.97 4.02
287 288 1.178534 ATCCAGTTGGGTTTGCCGTG 61.179 55.000 0.00 0.00 38.11 4.94
288 289 0.469144 AATCCAGTTGGGTTTGCCGT 60.469 50.000 0.00 0.00 34.09 5.68
290 291 2.897326 AGTTAATCCAGTTGGGTTTGCC 59.103 45.455 1.35 0.00 39.66 4.52
292 293 5.528870 GTTCAGTTAATCCAGTTGGGTTTG 58.471 41.667 1.35 0.00 39.66 2.93
293 294 4.277423 CGTTCAGTTAATCCAGTTGGGTTT 59.723 41.667 1.35 0.00 39.66 3.27
295 296 3.408634 CGTTCAGTTAATCCAGTTGGGT 58.591 45.455 0.00 0.00 38.11 4.51
297 298 3.670625 TCCGTTCAGTTAATCCAGTTGG 58.329 45.455 0.00 0.00 0.00 3.77
298 299 3.684788 CCTCCGTTCAGTTAATCCAGTTG 59.315 47.826 0.00 0.00 0.00 3.16
299 300 3.326880 ACCTCCGTTCAGTTAATCCAGTT 59.673 43.478 0.00 0.00 0.00 3.16
300 301 2.904434 ACCTCCGTTCAGTTAATCCAGT 59.096 45.455 0.00 0.00 0.00 4.00
301 302 3.195825 AGACCTCCGTTCAGTTAATCCAG 59.804 47.826 0.00 0.00 0.00 3.86
304 305 4.174762 GACAGACCTCCGTTCAGTTAATC 58.825 47.826 0.00 0.00 0.00 1.75
306 307 2.298163 GGACAGACCTCCGTTCAGTTAA 59.702 50.000 0.00 0.00 35.41 2.01
307 308 1.891150 GGACAGACCTCCGTTCAGTTA 59.109 52.381 0.00 0.00 35.41 2.24
308 309 0.680061 GGACAGACCTCCGTTCAGTT 59.320 55.000 0.00 0.00 35.41 3.16
309 310 1.524863 CGGACAGACCTCCGTTCAGT 61.525 60.000 0.00 0.00 46.93 3.41
310 311 1.213013 CGGACAGACCTCCGTTCAG 59.787 63.158 0.00 0.00 46.93 3.02
328 329 1.303309 CTGGGCTCCACGAATTGATC 58.697 55.000 0.00 0.00 0.00 2.92
330 331 1.271856 TACTGGGCTCCACGAATTGA 58.728 50.000 0.00 0.00 0.00 2.57
331 332 1.737793 GTTACTGGGCTCCACGAATTG 59.262 52.381 0.00 0.00 0.00 2.32
332 333 1.349688 TGTTACTGGGCTCCACGAATT 59.650 47.619 0.00 0.00 0.00 2.17
334 335 0.320374 CTGTTACTGGGCTCCACGAA 59.680 55.000 0.00 0.00 0.00 3.85
335 336 0.830444 ACTGTTACTGGGCTCCACGA 60.830 55.000 0.00 0.00 0.00 4.35
337 338 0.321653 CCACTGTTACTGGGCTCCAC 60.322 60.000 0.00 0.00 0.00 4.02
338 339 1.488705 CCCACTGTTACTGGGCTCCA 61.489 60.000 0.00 0.00 42.22 3.86
339 340 1.299976 CCCACTGTTACTGGGCTCC 59.700 63.158 0.00 0.00 42.22 4.70
344 345 2.166664 GCTCTCTACCCACTGTTACTGG 59.833 54.545 0.00 0.00 0.00 4.00
345 346 2.826128 TGCTCTCTACCCACTGTTACTG 59.174 50.000 0.00 0.00 0.00 2.74
346 347 2.826725 GTGCTCTCTACCCACTGTTACT 59.173 50.000 0.00 0.00 0.00 2.24
347 348 2.094130 GGTGCTCTCTACCCACTGTTAC 60.094 54.545 0.00 0.00 31.89 2.50
348 349 2.176889 GGTGCTCTCTACCCACTGTTA 58.823 52.381 0.00 0.00 31.89 2.41
349 350 0.977395 GGTGCTCTCTACCCACTGTT 59.023 55.000 0.00 0.00 31.89 3.16
350 351 2.672414 GGTGCTCTCTACCCACTGT 58.328 57.895 0.00 0.00 31.89 3.55
357 358 3.851128 GGGCGGGGTGCTCTCTAC 61.851 72.222 0.00 0.00 42.52 2.59
368 1570 4.377708 GCCTTTTGCTTGGGCGGG 62.378 66.667 0.00 0.00 42.25 6.13
375 1577 1.618343 GTGTATGGTGGCCTTTTGCTT 59.382 47.619 3.32 0.00 40.92 3.91
377 1579 0.965439 TGTGTATGGTGGCCTTTTGC 59.035 50.000 3.32 0.00 40.16 3.68
392 1594 9.467258 CAGATTTTAGAACATTGTGAAATGTGT 57.533 29.630 4.94 0.00 42.13 3.72
407 1609 8.681806 TGTGTGTCATGTTTTCAGATTTTAGAA 58.318 29.630 0.00 0.00 0.00 2.10
408 1610 8.219546 TGTGTGTCATGTTTTCAGATTTTAGA 57.780 30.769 0.00 0.00 0.00 2.10
409 1611 8.854979 TTGTGTGTCATGTTTTCAGATTTTAG 57.145 30.769 0.00 0.00 0.00 1.85
413 1622 7.095910 TGTTTTGTGTGTCATGTTTTCAGATT 58.904 30.769 0.00 0.00 0.00 2.40
414 1623 6.629128 TGTTTTGTGTGTCATGTTTTCAGAT 58.371 32.000 0.00 0.00 0.00 2.90
415 1624 6.018589 TGTTTTGTGTGTCATGTTTTCAGA 57.981 33.333 0.00 0.00 0.00 3.27
418 1627 7.008810 ACGTTATGTTTTGTGTGTCATGTTTTC 59.991 33.333 0.00 0.00 0.00 2.29
422 1631 5.493133 ACGTTATGTTTTGTGTGTCATGT 57.507 34.783 0.00 0.00 0.00 3.21
423 1632 6.655062 ACTACGTTATGTTTTGTGTGTCATG 58.345 36.000 0.00 0.00 0.00 3.07
427 1636 9.048446 AGATTAACTACGTTATGTTTTGTGTGT 57.952 29.630 0.00 0.00 0.00 3.72
511 1734 3.813529 AGAAATGGAAAGACGAAAGCG 57.186 42.857 0.00 0.00 44.79 4.68
525 1748 2.995466 ACATGACACGCCAAGAAATG 57.005 45.000 0.00 0.00 0.00 2.32
526 1749 3.436704 CAGTACATGACACGCCAAGAAAT 59.563 43.478 0.00 0.00 0.00 2.17
530 1770 1.795768 ACAGTACATGACACGCCAAG 58.204 50.000 0.00 0.00 0.00 3.61
533 1773 2.527100 GAGTACAGTACATGACACGCC 58.473 52.381 13.37 0.00 0.00 5.68
539 1779 2.022195 GCGAGGGAGTACAGTACATGA 58.978 52.381 13.37 0.00 0.00 3.07
984 2224 0.824759 AGAGCTAGGTTAGGCCGTTG 59.175 55.000 0.00 0.00 43.70 4.10
985 2225 1.112950 GAGAGCTAGGTTAGGCCGTT 58.887 55.000 0.00 0.00 43.70 4.44
986 2226 0.259356 AGAGAGCTAGGTTAGGCCGT 59.741 55.000 0.00 0.00 43.70 5.68
987 2227 0.955905 GAGAGAGCTAGGTTAGGCCG 59.044 60.000 0.00 0.00 43.70 6.13
988 2228 2.158519 AGAGAGAGAGCTAGGTTAGGCC 60.159 54.545 0.00 0.00 37.58 5.19
991 2231 5.305644 AGAGAGAGAGAGAGAGCTAGGTTAG 59.694 48.000 0.00 0.00 0.00 2.34
992 2232 5.216622 AGAGAGAGAGAGAGAGCTAGGTTA 58.783 45.833 0.00 0.00 0.00 2.85
993 2233 4.040755 AGAGAGAGAGAGAGAGCTAGGTT 58.959 47.826 0.00 0.00 0.00 3.50
994 2234 3.643792 GAGAGAGAGAGAGAGAGCTAGGT 59.356 52.174 0.00 0.00 0.00 3.08
995 2235 3.007398 GGAGAGAGAGAGAGAGAGCTAGG 59.993 56.522 0.00 0.00 0.00 3.02
997 2237 2.628178 CGGAGAGAGAGAGAGAGAGCTA 59.372 54.545 0.00 0.00 0.00 3.32
998 2238 1.414181 CGGAGAGAGAGAGAGAGAGCT 59.586 57.143 0.00 0.00 0.00 4.09
999 2239 1.871080 CGGAGAGAGAGAGAGAGAGC 58.129 60.000 0.00 0.00 0.00 4.09
1001 2241 0.104120 CGCGGAGAGAGAGAGAGAGA 59.896 60.000 0.00 0.00 0.00 3.10
1003 2243 1.522806 GCGCGGAGAGAGAGAGAGA 60.523 63.158 8.83 0.00 0.00 3.10
1083 2369 1.673928 CCATCTCTCCCTCCCTCCCT 61.674 65.000 0.00 0.00 0.00 4.20
1084 2370 1.152139 CCATCTCTCCCTCCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
1085 2371 1.152139 CCCATCTCTCCCTCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
1086 2372 1.152139 CCCCATCTCTCCCTCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
1087 2373 1.949449 ACCCCATCTCTCCCTCCCT 60.949 63.158 0.00 0.00 0.00 4.20
1088 2374 1.460497 GACCCCATCTCTCCCTCCC 60.460 68.421 0.00 0.00 0.00 4.30
1089 2375 1.834822 CGACCCCATCTCTCCCTCC 60.835 68.421 0.00 0.00 0.00 4.30
1090 2376 0.825840 CTCGACCCCATCTCTCCCTC 60.826 65.000 0.00 0.00 0.00 4.30
1091 2377 1.231641 CTCGACCCCATCTCTCCCT 59.768 63.158 0.00 0.00 0.00 4.20
1092 2378 1.834822 CCTCGACCCCATCTCTCCC 60.835 68.421 0.00 0.00 0.00 4.30
1334 2620 3.670377 GCCAGCGGCGGAACTTTT 61.670 61.111 9.78 0.00 39.62 2.27
1359 2645 1.078637 GGGACAACTAAGCGGGGAC 60.079 63.158 0.00 0.00 0.00 4.46
1360 2646 1.229400 AGGGACAACTAAGCGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
1361 2647 1.078426 CAGGGACAACTAAGCGGGG 60.078 63.158 0.00 0.00 0.00 5.73
1362 2648 1.745489 GCAGGGACAACTAAGCGGG 60.745 63.158 0.00 0.00 0.00 6.13
1363 2649 0.392998 ATGCAGGGACAACTAAGCGG 60.393 55.000 0.00 0.00 0.00 5.52
1364 2650 1.131126 CAATGCAGGGACAACTAAGCG 59.869 52.381 0.00 0.00 0.00 4.68
1365 2651 1.135286 GCAATGCAGGGACAACTAAGC 60.135 52.381 0.00 0.00 0.00 3.09
1366 2652 1.474077 GGCAATGCAGGGACAACTAAG 59.526 52.381 7.79 0.00 0.00 2.18
1367 2653 1.544724 GGCAATGCAGGGACAACTAA 58.455 50.000 7.79 0.00 0.00 2.24
1368 2654 0.676466 CGGCAATGCAGGGACAACTA 60.676 55.000 7.79 0.00 0.00 2.24
1369 2655 1.973281 CGGCAATGCAGGGACAACT 60.973 57.895 7.79 0.00 0.00 3.16
1370 2656 2.568090 CGGCAATGCAGGGACAAC 59.432 61.111 7.79 0.00 0.00 3.32
1371 2657 3.372730 GCGGCAATGCAGGGACAA 61.373 61.111 7.79 0.00 34.15 3.18
1484 2789 2.735772 CCTCTCCACCCACCATCGG 61.736 68.421 0.00 0.00 0.00 4.18
1492 2797 0.106967 GAGAATTGGCCTCTCCACCC 60.107 60.000 3.32 0.00 46.55 4.61
1513 2818 0.744281 AAAACACACCCGAGGCAAAG 59.256 50.000 0.00 0.00 0.00 2.77
1516 2821 0.106918 AAGAAAACACACCCGAGGCA 60.107 50.000 0.00 0.00 0.00 4.75
1518 2823 3.443976 CAAAAAGAAAACACACCCGAGG 58.556 45.455 0.00 0.00 0.00 4.63
1520 2825 2.494073 AGCAAAAAGAAAACACACCCGA 59.506 40.909 0.00 0.00 0.00 5.14
1522 2827 2.935849 CCAGCAAAAAGAAAACACACCC 59.064 45.455 0.00 0.00 0.00 4.61
1533 2838 1.197721 CCAGCTACGTCCAGCAAAAAG 59.802 52.381 12.62 0.00 44.35 2.27
1534 2839 1.202710 TCCAGCTACGTCCAGCAAAAA 60.203 47.619 12.62 0.00 44.35 1.94
1536 2841 0.320421 GTCCAGCTACGTCCAGCAAA 60.320 55.000 12.62 0.00 44.35 3.68
1537 2842 1.292223 GTCCAGCTACGTCCAGCAA 59.708 57.895 12.62 0.00 44.35 3.91
1538 2843 1.468506 TTGTCCAGCTACGTCCAGCA 61.469 55.000 12.62 0.00 44.35 4.41
1539 2844 0.108138 ATTGTCCAGCTACGTCCAGC 60.108 55.000 1.93 1.93 42.12 4.85
1540 2845 2.386661 AATTGTCCAGCTACGTCCAG 57.613 50.000 0.00 0.00 0.00 3.86
1541 2846 2.695359 GAAATTGTCCAGCTACGTCCA 58.305 47.619 0.00 0.00 0.00 4.02
1542 2847 1.659098 CGAAATTGTCCAGCTACGTCC 59.341 52.381 0.00 0.00 0.00 4.79
1543 2848 2.334838 ACGAAATTGTCCAGCTACGTC 58.665 47.619 0.00 0.00 0.00 4.34
1544 2849 2.450609 ACGAAATTGTCCAGCTACGT 57.549 45.000 0.00 0.00 0.00 3.57
1545 2850 3.303495 CAGTACGAAATTGTCCAGCTACG 59.697 47.826 0.00 0.00 0.00 3.51
1546 2851 3.617263 CCAGTACGAAATTGTCCAGCTAC 59.383 47.826 0.00 0.00 0.00 3.58
1547 2852 3.857052 CCAGTACGAAATTGTCCAGCTA 58.143 45.455 0.00 0.00 0.00 3.32
1554 2859 2.031157 GCAACAGCCAGTACGAAATTGT 60.031 45.455 0.00 0.00 0.00 2.71
1555 2860 2.584791 GCAACAGCCAGTACGAAATTG 58.415 47.619 0.00 0.00 0.00 2.32
1587 2892 2.747446 GCAAGGAAAATCTAGCCGACAA 59.253 45.455 0.00 0.00 0.00 3.18
1590 2895 4.481368 TTAGCAAGGAAAATCTAGCCGA 57.519 40.909 0.00 0.00 0.00 5.54
1604 2910 3.157087 ACTGGACACCCAAATTAGCAAG 58.843 45.455 0.00 0.00 42.98 4.01
1620 2926 3.138283 AGTCAAAACCATGAGGAACTGGA 59.862 43.478 0.00 0.00 41.55 3.86
1624 2930 7.886338 AGAAATAAGTCAAAACCATGAGGAAC 58.114 34.615 0.00 0.00 38.69 3.62
1651 2957 2.659610 GCGGAGAAGCTGTCCACT 59.340 61.111 14.31 0.00 33.14 4.00
1661 2967 2.806244 GCTTTTCACAGTAAGCGGAGAA 59.194 45.455 0.00 0.00 37.60 2.87
1667 2973 4.406943 GCATACAGCTTTTCACAGTAAGC 58.593 43.478 0.00 0.00 45.46 3.09
1698 3004 2.123428 GCCAGCCCACATTGCTAGG 61.123 63.158 0.00 0.00 36.81 3.02
1701 3019 2.362120 GAGCCAGCCCACATTGCT 60.362 61.111 0.00 0.00 40.41 3.91
1715 3033 4.768583 AGATTTGAGTGGAATCTGAGAGC 58.231 43.478 0.00 0.00 41.13 4.09
1719 3037 6.364568 TGAGAAGATTTGAGTGGAATCTGA 57.635 37.500 0.58 0.00 41.66 3.27
1736 3054 3.672808 AGTTTCACAGCCAGATGAGAAG 58.327 45.455 0.00 0.00 32.54 2.85
1765 3083 3.759581 AGGAGCAACACTGACATCAAAT 58.240 40.909 0.00 0.00 0.00 2.32
1812 3132 5.563592 CATGGCATTAGAGTATGGGATTGA 58.436 41.667 0.00 0.00 0.00 2.57
1842 3196 2.775890 GGATGGATCATCGCTGAACAT 58.224 47.619 8.85 8.85 41.35 2.71
1844 3198 1.143305 CGGATGGATCATCGCTGAAC 58.857 55.000 0.00 0.00 41.35 3.18
1851 3205 5.762218 ACAAGATTTTCTCGGATGGATCATC 59.238 40.000 0.00 0.00 39.87 2.92
1852 3206 5.688807 ACAAGATTTTCTCGGATGGATCAT 58.311 37.500 0.00 0.00 0.00 2.45
1911 3265 1.447838 CCACGGGATCTGGTTGTCG 60.448 63.158 0.00 0.00 0.00 4.35
2151 3505 3.572682 AGAACACGTTGTCAGTAGGATGA 59.427 43.478 0.00 0.00 0.00 2.92
2229 3609 8.428063 TCAAATTCCATTAACCAAACAGTCATT 58.572 29.630 0.00 0.00 0.00 2.57
2254 3634 9.082313 AGATCCAATGAAAATATACCCACAATC 57.918 33.333 0.00 0.00 0.00 2.67
2312 3692 4.697802 TTTCCTACCTTCCTACCTACCA 57.302 45.455 0.00 0.00 0.00 3.25
2316 3696 5.160386 TCTTGTTTTCCTACCTTCCTACCT 58.840 41.667 0.00 0.00 0.00 3.08
2317 3697 5.012871 ACTCTTGTTTTCCTACCTTCCTACC 59.987 44.000 0.00 0.00 0.00 3.18
2318 3698 6.111669 ACTCTTGTTTTCCTACCTTCCTAC 57.888 41.667 0.00 0.00 0.00 3.18
2319 3699 5.842328 TGACTCTTGTTTTCCTACCTTCCTA 59.158 40.000 0.00 0.00 0.00 2.94
2320 3700 4.658901 TGACTCTTGTTTTCCTACCTTCCT 59.341 41.667 0.00 0.00 0.00 3.36
2321 3701 4.969484 TGACTCTTGTTTTCCTACCTTCC 58.031 43.478 0.00 0.00 0.00 3.46
2322 3702 5.470437 CCTTGACTCTTGTTTTCCTACCTTC 59.530 44.000 0.00 0.00 0.00 3.46
2323 3703 5.104067 ACCTTGACTCTTGTTTTCCTACCTT 60.104 40.000 0.00 0.00 0.00 3.50
2343 3723 3.584406 TCCTGAACATGACATCTCACCTT 59.416 43.478 0.00 0.00 0.00 3.50
2425 3806 2.352030 CCAACAGTGCCAATGATCACAC 60.352 50.000 0.00 1.29 35.76 3.82
2433 3814 1.331214 CCTTGTCCAACAGTGCCAAT 58.669 50.000 0.00 0.00 0.00 3.16
2440 3821 0.389025 GGTTTGCCCTTGTCCAACAG 59.611 55.000 0.00 0.00 0.00 3.16
2441 3822 2.510664 GGTTTGCCCTTGTCCAACA 58.489 52.632 0.00 0.00 0.00 3.33
2452 3833 2.549992 GGAAAGGAACATTGGGTTTGCC 60.550 50.000 0.00 0.00 40.63 4.52
2453 3834 2.368548 AGGAAAGGAACATTGGGTTTGC 59.631 45.455 0.00 0.00 40.63 3.68
2454 3835 4.503123 GGAAGGAAAGGAACATTGGGTTTG 60.503 45.833 0.00 0.00 40.63 2.93
2455 3836 3.646162 GGAAGGAAAGGAACATTGGGTTT 59.354 43.478 0.00 0.00 40.63 3.27
2460 3841 2.488153 GACGGGAAGGAAAGGAACATTG 59.512 50.000 0.00 0.00 0.00 2.82
2485 3866 9.696917 CAGCTATAAAGACAAAAGGAAAAATGT 57.303 29.630 0.00 0.00 0.00 2.71
2487 3868 8.367156 TGCAGCTATAAAGACAAAAGGAAAAAT 58.633 29.630 0.00 0.00 0.00 1.82
2494 3875 7.093322 AGGAATGCAGCTATAAAGACAAAAG 57.907 36.000 0.00 0.00 0.00 2.27
2554 3935 8.362464 TGTATAAGGTACAACTCAGATTCAGT 57.638 34.615 0.00 0.00 0.00 3.41
2588 3971 8.771521 AGGGTTAACTTTACATGGTTTTAAGT 57.228 30.769 5.42 0.00 0.00 2.24
2600 3983 4.461431 CCCACCATCAAGGGTTAACTTTAC 59.539 45.833 5.42 0.00 43.89 2.01
2611 3994 0.475906 GAGATCCCCCACCATCAAGG 59.524 60.000 0.00 0.00 45.67 3.61
2621 4006 2.040412 ACTGAAACACTTGAGATCCCCC 59.960 50.000 0.00 0.00 0.00 5.40
2647 4032 6.046593 TGCCCAGTATATTTGACTAAACTCG 58.953 40.000 0.00 0.00 0.00 4.18
2659 4044 4.477213 AGTTTACACCCTGCCCAGTATATT 59.523 41.667 0.00 0.00 0.00 1.28
2661 4046 3.199071 CAGTTTACACCCTGCCCAGTATA 59.801 47.826 0.00 0.00 0.00 1.47
2694 4079 9.105844 AGGGAGTACATTGTATTATATGCTTCT 57.894 33.333 0.00 0.00 0.00 2.85
2703 4088 5.657745 TGAACGGAGGGAGTACATTGTATTA 59.342 40.000 0.00 0.00 0.00 0.98
2712 4097 2.825861 TTTGTGAACGGAGGGAGTAC 57.174 50.000 0.00 0.00 0.00 2.73
2714 4099 5.424252 TCTTATATTTGTGAACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
2715 4100 5.914033 TCTTATATTTGTGAACGGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
2716 4101 5.943349 TCTTATATTTGTGAACGGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
2717 4102 6.055588 ACATCTTATATTTGTGAACGGAGGG 58.944 40.000 0.00 0.00 0.00 4.30
2718 4103 7.495934 AGAACATCTTATATTTGTGAACGGAGG 59.504 37.037 0.00 0.00 0.00 4.30
2719 4104 8.331022 CAGAACATCTTATATTTGTGAACGGAG 58.669 37.037 0.00 0.00 0.00 4.63
2720 4105 8.038351 TCAGAACATCTTATATTTGTGAACGGA 58.962 33.333 0.00 0.00 0.00 4.69
2721 4106 8.116753 GTCAGAACATCTTATATTTGTGAACGG 58.883 37.037 0.00 0.00 0.00 4.44
2722 4107 8.873830 AGTCAGAACATCTTATATTTGTGAACG 58.126 33.333 0.00 0.00 0.00 3.95
2777 4162 8.592105 AATGAGTGACCAAACACATTAAAATG 57.408 30.769 1.13 1.13 38.88 2.32
2778 4163 9.260002 GAAATGAGTGACCAAACACATTAAAAT 57.740 29.630 0.00 0.00 39.46 1.82
2779 4164 8.253810 TGAAATGAGTGACCAAACACATTAAAA 58.746 29.630 0.00 0.00 39.46 1.52
2780 4165 7.776107 TGAAATGAGTGACCAAACACATTAAA 58.224 30.769 0.00 0.00 39.46 1.52
2781 4166 7.068103 ACTGAAATGAGTGACCAAACACATTAA 59.932 33.333 0.00 0.00 39.46 1.40
2782 4167 6.545666 ACTGAAATGAGTGACCAAACACATTA 59.454 34.615 0.00 0.00 39.46 1.90
2783 4168 5.360714 ACTGAAATGAGTGACCAAACACATT 59.639 36.000 0.00 0.00 41.29 2.71
2784 4169 4.889409 ACTGAAATGAGTGACCAAACACAT 59.111 37.500 0.00 0.00 42.45 3.21
2785 4170 4.269183 ACTGAAATGAGTGACCAAACACA 58.731 39.130 0.00 0.00 42.45 3.72
2786 4171 4.261197 GGACTGAAATGAGTGACCAAACAC 60.261 45.833 0.00 0.00 40.60 3.32
2787 4172 3.882888 GGACTGAAATGAGTGACCAAACA 59.117 43.478 0.00 0.00 0.00 2.83
2788 4173 3.058914 CGGACTGAAATGAGTGACCAAAC 60.059 47.826 0.00 0.00 0.00 2.93
2789 4174 3.138304 CGGACTGAAATGAGTGACCAAA 58.862 45.455 0.00 0.00 0.00 3.28
2790 4175 2.766313 CGGACTGAAATGAGTGACCAA 58.234 47.619 0.00 0.00 0.00 3.67
2791 4176 1.608025 GCGGACTGAAATGAGTGACCA 60.608 52.381 0.00 0.00 0.00 4.02
2792 4177 1.079503 GCGGACTGAAATGAGTGACC 58.920 55.000 0.00 0.00 0.00 4.02
2793 4178 1.795768 TGCGGACTGAAATGAGTGAC 58.204 50.000 0.00 0.00 0.00 3.67
2794 4179 2.289631 ACATGCGGACTGAAATGAGTGA 60.290 45.455 0.00 0.00 0.00 3.41
2795 4180 2.079158 ACATGCGGACTGAAATGAGTG 58.921 47.619 0.00 0.00 0.00 3.51
2796 4181 2.479566 ACATGCGGACTGAAATGAGT 57.520 45.000 0.00 0.00 0.00 3.41
2797 4182 3.525537 ACTACATGCGGACTGAAATGAG 58.474 45.455 0.00 1.98 0.00 2.90
2798 4183 3.521560 GACTACATGCGGACTGAAATGA 58.478 45.455 0.00 0.00 0.00 2.57
2799 4184 2.609459 GGACTACATGCGGACTGAAATG 59.391 50.000 0.00 0.00 0.00 2.32
2800 4185 2.236146 TGGACTACATGCGGACTGAAAT 59.764 45.455 0.00 0.00 0.00 2.17
2801 4186 1.621317 TGGACTACATGCGGACTGAAA 59.379 47.619 0.00 0.00 0.00 2.69
2802 4187 1.262417 TGGACTACATGCGGACTGAA 58.738 50.000 0.00 0.00 0.00 3.02
2803 4188 1.485124 ATGGACTACATGCGGACTGA 58.515 50.000 0.00 0.00 38.70 3.41
2804 4189 3.667497 ATATGGACTACATGCGGACTG 57.333 47.619 0.00 0.00 40.82 3.51
2805 4190 3.641436 TCAATATGGACTACATGCGGACT 59.359 43.478 0.00 0.00 40.82 3.85
2806 4191 3.990092 TCAATATGGACTACATGCGGAC 58.010 45.455 0.00 0.00 40.82 4.79
2807 4192 4.681074 TTCAATATGGACTACATGCGGA 57.319 40.909 0.00 0.00 40.82 5.54
2808 4193 5.947228 ATTTCAATATGGACTACATGCGG 57.053 39.130 0.00 0.00 40.82 5.69
2809 4194 7.334171 TGGATATTTCAATATGGACTACATGCG 59.666 37.037 0.00 0.00 40.82 4.73
2810 4195 8.565896 TGGATATTTCAATATGGACTACATGC 57.434 34.615 0.00 0.00 40.82 4.06
2836 4221 9.699410 TCCTCCATTCACAAATATAAGATGTTT 57.301 29.630 0.00 0.00 0.00 2.83
2837 4222 9.699410 TTCCTCCATTCACAAATATAAGATGTT 57.301 29.630 0.00 0.00 0.00 2.71
2838 4223 9.347240 CTTCCTCCATTCACAAATATAAGATGT 57.653 33.333 0.00 0.00 0.00 3.06
2839 4224 9.347240 ACTTCCTCCATTCACAAATATAAGATG 57.653 33.333 0.00 0.00 0.00 2.90
2841 4226 9.832445 GTACTTCCTCCATTCACAAATATAAGA 57.168 33.333 0.00 0.00 0.00 2.10
2842 4227 9.613428 TGTACTTCCTCCATTCACAAATATAAG 57.387 33.333 0.00 0.00 0.00 1.73
2844 4229 9.778741 GATGTACTTCCTCCATTCACAAATATA 57.221 33.333 0.00 0.00 0.00 0.86
2845 4230 7.721399 GGATGTACTTCCTCCATTCACAAATAT 59.279 37.037 18.30 0.00 32.27 1.28
2846 4231 7.054124 GGATGTACTTCCTCCATTCACAAATA 58.946 38.462 18.30 0.00 32.27 1.40
2847 4232 5.888161 GGATGTACTTCCTCCATTCACAAAT 59.112 40.000 18.30 0.00 32.27 2.32
2848 4233 5.014123 AGGATGTACTTCCTCCATTCACAAA 59.986 40.000 21.63 0.00 42.71 2.83
2849 4234 4.536090 AGGATGTACTTCCTCCATTCACAA 59.464 41.667 21.63 0.00 42.71 3.33
2850 4235 4.104086 AGGATGTACTTCCTCCATTCACA 58.896 43.478 21.63 0.00 42.71 3.58
2851 4236 4.762289 AGGATGTACTTCCTCCATTCAC 57.238 45.455 21.63 0.00 42.71 3.18
2860 4245 8.738645 AGATTGTTTATTGAGGATGTACTTCC 57.261 34.615 17.98 17.98 35.90 3.46
2861 4246 9.606631 AGAGATTGTTTATTGAGGATGTACTTC 57.393 33.333 0.10 0.10 0.00 3.01
2862 4247 9.965902 AAGAGATTGTTTATTGAGGATGTACTT 57.034 29.630 0.00 0.00 0.00 2.24
2863 4248 9.606631 GAAGAGATTGTTTATTGAGGATGTACT 57.393 33.333 0.00 0.00 0.00 2.73
2864 4249 8.831550 GGAAGAGATTGTTTATTGAGGATGTAC 58.168 37.037 0.00 0.00 0.00 2.90
2865 4250 7.993183 GGGAAGAGATTGTTTATTGAGGATGTA 59.007 37.037 0.00 0.00 0.00 2.29
2866 4251 6.830838 GGGAAGAGATTGTTTATTGAGGATGT 59.169 38.462 0.00 0.00 0.00 3.06
2867 4252 7.013083 CAGGGAAGAGATTGTTTATTGAGGATG 59.987 40.741 0.00 0.00 0.00 3.51
2868 4253 7.059156 CAGGGAAGAGATTGTTTATTGAGGAT 58.941 38.462 0.00 0.00 0.00 3.24
2869 4254 6.215431 TCAGGGAAGAGATTGTTTATTGAGGA 59.785 38.462 0.00 0.00 0.00 3.71
2870 4255 6.418101 TCAGGGAAGAGATTGTTTATTGAGG 58.582 40.000 0.00 0.00 0.00 3.86
2871 4256 7.826252 TCTTCAGGGAAGAGATTGTTTATTGAG 59.174 37.037 4.64 0.00 42.78 3.02
2872 4257 7.689299 TCTTCAGGGAAGAGATTGTTTATTGA 58.311 34.615 4.64 0.00 42.78 2.57
2873 4258 7.928307 TCTTCAGGGAAGAGATTGTTTATTG 57.072 36.000 4.64 0.00 42.78 1.90
2891 4276 9.994432 CTTAGCCTACAAAACATTATTCTTCAG 57.006 33.333 0.00 0.00 0.00 3.02
2930 4315 3.932710 GTCGCCTACACTGAATGATTTCA 59.067 43.478 0.00 0.00 39.54 2.69
2944 4331 6.312918 TCTGATTTTACTGAATTGTCGCCTAC 59.687 38.462 0.00 0.00 0.00 3.18
2947 4334 5.545658 TCTGATTTTACTGAATTGTCGCC 57.454 39.130 0.00 0.00 0.00 5.54
2975 4362 9.971922 AGATTCAGTTGCCTAATTTATTAATGC 57.028 29.630 0.00 0.00 0.00 3.56
3009 4396 2.223665 GCTACCCAAATCATGCTGAAGC 60.224 50.000 0.00 0.00 42.50 3.86
3012 4399 1.284491 TGGCTACCCAAATCATGCTGA 59.716 47.619 0.00 0.00 38.46 4.26
3013 4400 1.766494 TGGCTACCCAAATCATGCTG 58.234 50.000 0.00 0.00 38.46 4.41
3053 4671 9.066892 TGCTGTTCTGAAGTTATAAGAATGTTT 57.933 29.630 0.00 0.00 32.85 2.83
3056 4674 9.552114 CTTTGCTGTTCTGAAGTTATAAGAATG 57.448 33.333 0.00 0.00 32.85 2.67
3063 4681 4.985538 TCCCTTTGCTGTTCTGAAGTTAT 58.014 39.130 0.00 0.00 0.00 1.89
3081 4699 1.620822 AAAGACAATTGCGCTTCCCT 58.379 45.000 9.73 0.00 0.00 4.20
3084 4702 2.650608 ACGAAAAGACAATTGCGCTTC 58.349 42.857 9.73 0.00 0.00 3.86
3085 4703 2.774439 ACGAAAAGACAATTGCGCTT 57.226 40.000 9.73 6.84 0.00 4.68
3086 4704 2.774439 AACGAAAAGACAATTGCGCT 57.226 40.000 9.73 0.00 0.00 5.92
3087 4705 4.374607 GGTTAAACGAAAAGACAATTGCGC 60.375 41.667 5.05 0.00 0.00 6.09
3088 4706 4.735822 TGGTTAAACGAAAAGACAATTGCG 59.264 37.500 5.05 2.23 0.00 4.85
3089 4707 5.746721 AGTGGTTAAACGAAAAGACAATTGC 59.253 36.000 5.05 0.00 0.00 3.56
3090 4708 6.970043 TCAGTGGTTAAACGAAAAGACAATTG 59.030 34.615 3.24 3.24 0.00 2.32
3091 4709 7.090953 TCAGTGGTTAAACGAAAAGACAATT 57.909 32.000 0.00 0.00 0.00 2.32
3437 5056 2.366480 CTGCCCAGAGGAGCTCATCG 62.366 65.000 21.65 16.00 33.47 3.84
3606 5225 4.319766 CCATGCTGAGGTAATAATTCACGC 60.320 45.833 0.00 0.00 0.00 5.34
3607 5226 4.816385 ACCATGCTGAGGTAATAATTCACG 59.184 41.667 0.00 0.00 37.67 4.35
3670 5293 4.092675 GCACAGAATAGACAAGAGCACTTC 59.907 45.833 0.00 0.00 33.70 3.01
3788 5411 2.375174 TGGTAGAAGCCCACAAATGACT 59.625 45.455 0.00 0.00 0.00 3.41
3863 5486 7.233348 ACATGGACTCATAAAACCAAATCAACT 59.767 33.333 0.00 0.00 36.00 3.16
3915 5546 1.270358 GCAGAGAGGGAACGTGAAAGT 60.270 52.381 0.00 0.00 0.00 2.66
3977 5615 7.502120 GTGAAACTATGGAAGTATGCATGAT 57.498 36.000 10.16 0.00 38.19 2.45
4017 5655 0.679002 CACCAGTCCTCCTGCAATGG 60.679 60.000 0.00 0.00 40.06 3.16
4102 5740 3.959535 TGTGATGTCAGCATGTAGTCA 57.040 42.857 0.00 0.00 37.40 3.41
4132 5770 0.179018 ACTTTCCACTGCACTCCACC 60.179 55.000 0.00 0.00 0.00 4.61
4150 5788 6.639686 TGCGAATATCTGTCGGACTAAAATAC 59.360 38.462 9.88 0.00 38.93 1.89
4288 5927 5.068198 GCGCCCATGGATCATGATAAAATAT 59.932 40.000 15.22 0.00 43.81 1.28
4289 5928 4.398988 GCGCCCATGGATCATGATAAAATA 59.601 41.667 15.22 0.00 43.81 1.40
4290 5929 3.194116 GCGCCCATGGATCATGATAAAAT 59.806 43.478 15.22 0.00 43.81 1.82
4294 5933 0.391528 CGCGCCCATGGATCATGATA 60.392 55.000 15.22 0.00 43.81 2.15
4302 5948 4.169696 CCCTAACGCGCCCATGGA 62.170 66.667 15.22 0.00 0.00 3.41
4311 5957 1.735559 GACGTGGTGTCCCTAACGC 60.736 63.158 0.00 0.00 42.04 4.84
4322 5968 3.469008 TGAATGAAAGACAGACGTGGT 57.531 42.857 0.00 0.00 0.00 4.16
4324 5970 5.121298 ACATGATGAATGAAAGACAGACGTG 59.879 40.000 0.00 0.00 38.72 4.49
4335 5981 5.882000 CCCTTCAGTACACATGATGAATGAA 59.118 40.000 0.00 4.14 38.72 2.57
4336 5982 5.045651 ACCCTTCAGTACACATGATGAATGA 60.046 40.000 0.00 0.00 38.72 2.57
4337 5983 5.065602 CACCCTTCAGTACACATGATGAATG 59.934 44.000 0.00 0.00 42.48 2.67
4338 5984 5.188434 CACCCTTCAGTACACATGATGAAT 58.812 41.667 0.00 0.00 31.69 2.57
4344 5990 4.832248 ACATACACCCTTCAGTACACATG 58.168 43.478 0.00 0.00 0.00 3.21
4347 5993 6.096423 TCAGATACATACACCCTTCAGTACAC 59.904 42.308 0.00 0.00 0.00 2.90
4352 5998 9.784531 AATAAATCAGATACATACACCCTTCAG 57.215 33.333 0.00 0.00 0.00 3.02
4695 6345 2.202756 GCGATGGACGAGGTGGTC 60.203 66.667 0.00 0.00 45.77 4.02
4713 6363 4.734398 AGAGCTCTAGGTGAATGTCTTG 57.266 45.455 16.50 0.00 0.00 3.02
4747 6397 3.578688 GTTGATGAAAGCCACCATTGTC 58.421 45.455 0.00 0.00 0.00 3.18
4821 6472 3.039202 CTCACCGGGTTGCGCATTC 62.039 63.158 12.75 7.84 0.00 2.67
4834 6485 1.818642 AATCTGCAACAGCTCTCACC 58.181 50.000 0.00 0.00 0.00 4.02
4841 6492 3.430895 CCAATGAACAAATCTGCAACAGC 59.569 43.478 0.00 0.00 0.00 4.40
4870 6521 9.167387 ACTACTGCTAATTACCCACCTAATATT 57.833 33.333 0.00 0.00 0.00 1.28
4871 6522 8.737601 ACTACTGCTAATTACCCACCTAATAT 57.262 34.615 0.00 0.00 0.00 1.28
4879 6531 7.497595 CACTAATGACTACTGCTAATTACCCA 58.502 38.462 0.00 0.00 0.00 4.51
4882 6534 6.984474 TGGCACTAATGACTACTGCTAATTAC 59.016 38.462 0.00 0.00 33.48 1.89
4883 6535 6.984474 GTGGCACTAATGACTACTGCTAATTA 59.016 38.462 11.13 0.00 33.48 1.40
4884 6536 5.817816 GTGGCACTAATGACTACTGCTAATT 59.182 40.000 11.13 0.00 33.48 1.40
4959 6611 3.074538 ACCAGCAAACCAGATAGGAGTTT 59.925 43.478 0.00 0.00 41.22 2.66
4983 6635 3.633525 CCATAGCTACAACAGGTACGGTA 59.366 47.826 0.00 0.00 39.96 4.02
4984 6636 2.429610 CCATAGCTACAACAGGTACGGT 59.570 50.000 0.00 0.00 39.96 4.83
4985 6637 2.223971 CCCATAGCTACAACAGGTACGG 60.224 54.545 0.00 0.00 39.71 4.02
4986 6638 2.429610 ACCCATAGCTACAACAGGTACG 59.570 50.000 0.00 0.00 39.96 3.67
4987 6639 5.803237 ATACCCATAGCTACAACAGGTAC 57.197 43.478 0.00 0.00 39.96 3.34
5093 6752 4.700268 TGTATGCATGTTCATGTTCCAC 57.300 40.909 10.16 0.00 0.00 4.02
5120 6779 6.442952 ACTGTAAAAGAATTGCGCATACAAA 58.557 32.000 12.75 0.00 32.27 2.83
5193 7375 1.344114 TGCACCATGCCTTCTTTTTCC 59.656 47.619 0.00 0.00 44.23 3.13
5194 7376 2.818130 TGCACCATGCCTTCTTTTTC 57.182 45.000 0.00 0.00 44.23 2.29
5200 7382 0.682209 AGACCATGCACCATGCCTTC 60.682 55.000 0.00 0.00 44.23 3.46
5211 7393 1.135083 ACGCTGTACACTAGACCATGC 60.135 52.381 0.00 0.00 0.00 4.06
5215 7397 2.422479 TCATCACGCTGTACACTAGACC 59.578 50.000 0.00 0.00 0.00 3.85
5218 7400 2.159379 TGCTCATCACGCTGTACACTAG 60.159 50.000 0.00 0.00 0.00 2.57
5237 7424 3.376234 ACACTAATCACATCACATGCTGC 59.624 43.478 0.00 0.00 0.00 5.25
5249 7436 7.329226 CCATGTGGATTTTCAAACACTAATCAC 59.671 37.037 0.00 0.00 37.39 3.06
5250 7437 7.015098 ACCATGTGGATTTTCAAACACTAATCA 59.985 33.333 5.96 0.00 38.94 2.57
5251 7438 7.378181 ACCATGTGGATTTTCAAACACTAATC 58.622 34.615 5.96 0.00 38.94 1.75
5252 7439 7.301868 ACCATGTGGATTTTCAAACACTAAT 57.698 32.000 5.96 0.00 38.94 1.73
5253 7440 6.239176 GGACCATGTGGATTTTCAAACACTAA 60.239 38.462 5.96 0.00 38.94 2.24
5261 7448 3.235750 TGTGGACCATGTGGATTTTCA 57.764 42.857 5.96 0.00 38.94 2.69
5362 7549 4.002316 GAGAGATGATGATTAGCAAGGGC 58.998 47.826 0.00 0.00 41.61 5.19
5445 7644 7.038154 TGTAGTTTTCTTTTGTGGGATTCAG 57.962 36.000 0.00 0.00 0.00 3.02
5549 7846 7.761038 AGTTTGTAGTGGAATCCCTAAAAAG 57.239 36.000 11.14 0.00 0.00 2.27
5620 7932 6.573434 AGATTTCACTATGAACTACATGCGA 58.427 36.000 0.00 0.00 35.89 5.10
5652 7964 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
5665 7977 1.134788 CCACATGTACTCCCTCCGTTC 60.135 57.143 0.00 0.00 0.00 3.95
5710 8022 8.013378 GCAAGTTTTCACGTACTATGTAATGTT 58.987 33.333 0.00 0.00 0.00 2.71
5711 8023 7.171848 TGCAAGTTTTCACGTACTATGTAATGT 59.828 33.333 0.00 0.00 0.00 2.71
5812 8127 6.093404 CAGAAATGCTGTTCGTAAGAGTCTA 58.907 40.000 0.00 0.00 41.45 2.59
5814 8129 4.434857 GCAGAAATGCTGTTCGTAAGAGTC 60.435 45.833 0.00 0.00 46.68 3.36
5822 8137 1.401931 CCTTGGCAGAAATGCTGTTCG 60.402 52.381 0.00 0.00 46.62 3.95
5823 8138 1.888512 TCCTTGGCAGAAATGCTGTTC 59.111 47.619 0.00 0.00 46.62 3.18
5828 8143 1.742268 GTCTCTCCTTGGCAGAAATGC 59.258 52.381 0.00 0.00 0.00 3.56
5871 8187 9.465985 TTCTTACGTTTTCTTGTTTCTGTTTTT 57.534 25.926 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.